Query 045702
Match_columns 728
No_of_seqs 429 out of 2670
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:40:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 9E-102 2E-106 882.3 49.5 649 17-722 2-655 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 1.8E-54 3.9E-59 459.9 26.7 286 238-523 2-289 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 1.9E-46 4.2E-51 381.2 25.3 239 19-265 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 3.8E-31 8.1E-36 280.5 33.3 291 17-317 279-583 (980)
5 smart00302 GED Dynamin GTPase 99.9 3.6E-26 7.8E-31 198.3 12.4 91 630-720 2-92 (92)
6 PF02212 GED: Dynamin GTPase e 99.9 4.4E-23 9.4E-28 179.7 11.8 92 629-720 1-92 (92)
7 PF00350 Dynamin_N: Dynamin fa 99.9 6.5E-22 1.4E-26 192.7 15.9 168 48-228 1-168 (168)
8 PRK09866 hypothetical protein; 99.8 6.5E-15 1.4E-19 164.2 40.9 228 20-263 49-341 (741)
9 COG0218 Predicted GTPase [Gene 99.6 1E-14 2.2E-19 141.6 17.8 129 43-236 22-153 (200)
10 COG1159 Era GTPase [General fu 99.6 8.2E-15 1.8E-19 149.8 17.1 124 47-236 8-132 (298)
11 COG0486 ThdF Predicted GTPase 99.6 1.5E-13 3.2E-18 148.6 24.3 174 19-264 191-365 (454)
12 COG0699 Predicted GTPases (dyn 99.5 5.9E-12 1.3E-16 145.7 31.1 534 101-715 3-542 (546)
13 TIGR00436 era GTP-binding prot 99.5 1.5E-13 3.2E-18 144.6 14.5 149 47-264 2-153 (270)
14 COG1160 Predicted GTPases [Gen 99.5 8E-14 1.7E-18 150.2 11.7 263 20-368 151-420 (444)
15 PF02421 FeoB_N: Ferrous iron 99.5 2.6E-14 5.7E-19 136.0 6.3 143 47-263 2-149 (156)
16 COG1160 Predicted GTPases [Gen 99.5 2.1E-13 4.5E-18 147.0 13.6 124 46-233 4-127 (444)
17 PRK00089 era GTPase Era; Revie 99.5 4.9E-13 1.1E-17 142.3 15.1 121 47-233 7-128 (292)
18 COG1084 Predicted GTPase [Gene 99.4 1.5E-12 3.3E-17 134.3 14.5 143 27-235 152-297 (346)
19 PF01926 MMR_HSR1: 50S ribosom 99.4 2.3E-12 5E-17 117.5 12.4 115 47-227 1-116 (116)
20 TIGR03156 GTP_HflX GTP-binding 99.4 5E-12 1.1E-16 137.3 16.9 126 43-232 187-315 (351)
21 COG3596 Predicted GTPase [Gene 99.4 3.6E-12 7.9E-17 128.7 13.4 206 45-334 38-250 (296)
22 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 6.2E-12 1.3E-16 125.8 14.1 124 47-234 2-132 (196)
23 TIGR03598 GTPase_YsxC ribosome 99.4 7.1E-12 1.5E-16 123.5 13.6 125 43-233 16-144 (179)
24 PRK11058 GTPase HflX; Provisio 99.3 1.9E-11 4.1E-16 135.8 17.3 126 43-232 195-323 (426)
25 PRK00093 GTP-binding protein D 99.3 2E-11 4.3E-16 137.4 17.4 126 44-232 172-298 (435)
26 TIGR00450 mnmE_trmE_thdF tRNA 99.3 3.2E-10 7E-15 126.7 26.1 149 17-233 176-325 (442)
27 PRK05291 trmE tRNA modificatio 99.3 1.5E-10 3.2E-15 130.1 23.5 168 20-264 190-359 (449)
28 TIGR03594 GTPase_EngA ribosome 99.3 2.7E-11 5.9E-16 136.1 17.6 146 22-231 148-296 (429)
29 PRK12299 obgE GTPase CgtA; Rev 99.3 1.7E-11 3.8E-16 132.0 15.3 124 45-233 158-286 (335)
30 PRK00454 engB GTP-binding prot 99.3 1.3E-11 2.8E-16 123.1 13.2 126 43-234 22-151 (196)
31 PRK15494 era GTPase Era; Provi 99.3 1.9E-11 4.2E-16 132.4 15.5 151 46-264 53-205 (339)
32 cd04163 Era Era subfamily. Er 99.3 2.1E-11 4.5E-16 117.0 13.9 74 152-232 52-125 (168)
33 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 1.7E-11 3.6E-16 118.7 13.0 117 46-233 1-117 (168)
34 PRK03003 GTP-binding protein D 99.3 3.1E-11 6.7E-16 136.9 15.8 126 44-233 210-337 (472)
35 PRK12298 obgE GTPase CgtA; Rev 99.3 4.2E-11 9E-16 131.6 15.9 123 45-233 159-290 (390)
36 cd01895 EngA2 EngA2 subfamily. 99.3 4.2E-11 9E-16 116.0 14.1 128 45-234 2-129 (174)
37 cd01878 HflX HflX subfamily. 99.3 7.4E-11 1.6E-15 118.7 16.3 128 43-234 39-169 (204)
38 KOG1423 Ras-like GTPase ERA [C 99.3 4.3E-11 9.3E-16 121.8 14.2 129 46-236 73-203 (379)
39 TIGR03594 GTPase_EngA ribosome 99.3 5.8E-11 1.3E-15 133.5 15.3 123 47-235 1-124 (429)
40 cd01898 Obg Obg subfamily. Th 99.3 5E-11 1.1E-15 115.7 12.8 24 47-70 2-25 (170)
41 PRK09518 bifunctional cytidyla 99.2 7.4E-11 1.6E-15 140.1 16.0 126 44-233 449-576 (712)
42 KOG1191 Mitochondrial GTPase [ 99.2 2.4E-10 5.2E-15 123.5 18.0 128 45-236 268-407 (531)
43 COG2262 HflX GTPases [General 99.2 2.6E-10 5.7E-15 121.5 17.9 169 2-234 142-320 (411)
44 PRK03003 GTP-binding protein D 99.2 1.2E-10 2.7E-15 132.0 16.3 124 43-232 36-160 (472)
45 cd01868 Rab11_like Rab11-like. 99.2 7E-11 1.5E-15 114.3 12.1 92 152-261 53-151 (165)
46 PRK00093 GTP-binding protein D 99.2 1.4E-10 3.1E-15 130.6 16.0 122 45-232 1-123 (435)
47 cd01894 EngA1 EngA1 subfamily. 99.2 6.7E-11 1.5E-15 112.8 11.4 76 152-234 46-121 (157)
48 cd01897 NOG NOG1 is a nucleola 99.2 1.6E-10 3.5E-15 112.0 14.2 25 46-70 1-25 (168)
49 TIGR02729 Obg_CgtA Obg family 99.2 1E-10 2.2E-15 125.9 13.5 125 45-233 157-288 (329)
50 cd01853 Toc34_like Toc34-like 99.2 2.5E-10 5.5E-15 118.0 15.3 129 43-235 29-166 (249)
51 cd04104 p47_IIGP_like p47 (47- 99.2 1.4E-10 2.9E-15 116.3 12.9 72 150-233 51-122 (197)
52 PRK12296 obgE GTPase CgtA; Rev 99.2 1.1E-10 2.5E-15 130.4 13.3 41 44-84 158-198 (500)
53 cd04171 SelB SelB subfamily. 99.2 1.7E-10 3.6E-15 111.1 12.8 66 152-233 52-119 (164)
54 cd04164 trmE TrmE (MnmE, ThdF, 99.2 4.1E-10 8.9E-15 107.3 15.3 74 152-234 50-123 (157)
55 PRK12297 obgE GTPase CgtA; Rev 99.2 2.3E-10 4.9E-15 126.5 15.3 123 45-231 158-287 (424)
56 cd01866 Rab2 Rab2 subfamily. 99.2 1.5E-10 3.3E-15 112.6 12.3 68 152-233 54-124 (168)
57 cd01867 Rab8_Rab10_Rab13_like 99.2 1.9E-10 4.1E-15 111.7 12.7 68 152-233 53-123 (167)
58 PRK09554 feoB ferrous iron tra 99.2 1.5E-10 3.1E-15 137.1 13.9 103 152-264 51-157 (772)
59 cd01861 Rab6 Rab6 subfamily. 99.2 1.6E-10 3.4E-15 111.1 11.7 68 152-233 50-120 (161)
60 cd01865 Rab3 Rab3 subfamily. 99.2 1.7E-10 3.7E-15 111.9 11.7 69 152-233 51-121 (165)
61 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4.4E-10 9.6E-15 117.9 15.3 140 19-233 21-168 (313)
62 cd01876 YihA_EngB The YihA (En 99.2 2.4E-10 5.3E-15 109.9 12.4 80 152-235 46-127 (170)
63 cd00881 GTP_translation_factor 99.2 3.1E-10 6.7E-15 111.9 13.4 68 151-233 62-129 (189)
64 cd00154 Rab Rab family. Rab G 99.2 1.7E-10 3.6E-15 109.7 11.0 66 152-231 50-118 (159)
65 KOG1954 Endocytosis/signaling 99.2 2.6E-10 5.7E-15 118.3 12.6 166 43-236 56-229 (532)
66 cd00880 Era_like Era (E. coli 99.2 5.6E-10 1.2E-14 105.7 14.2 77 151-235 45-121 (163)
67 cd04112 Rab26 Rab26 subfamily. 99.2 3.8E-10 8.3E-15 112.4 13.3 68 152-232 51-120 (191)
68 cd04142 RRP22 RRP22 subfamily. 99.2 3.4E-10 7.3E-15 113.5 12.9 76 152-233 50-131 (198)
69 cd04119 RJL RJL (RabJ-Like) su 99.1 3.3E-10 7.1E-15 109.3 12.4 68 152-232 50-124 (168)
70 cd04122 Rab14 Rab14 subfamily. 99.1 4E-10 8.7E-15 109.3 12.8 70 152-234 52-123 (166)
71 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 3.4E-10 7.3E-15 109.7 12.2 68 152-233 52-122 (166)
72 cd04145 M_R_Ras_like M-Ras/R-R 99.1 3.2E-10 6.9E-15 109.3 11.7 68 152-233 51-122 (164)
73 PRK04213 GTP-binding protein; 99.1 7.3E-10 1.6E-14 111.1 14.6 125 43-233 7-145 (201)
74 cd04136 Rap_like Rap-like subf 99.1 3.1E-10 6.7E-15 109.3 11.3 68 152-233 50-121 (163)
75 PRK09518 bifunctional cytidyla 99.1 5.1E-10 1.1E-14 133.0 15.5 124 44-233 274-398 (712)
76 cd04113 Rab4 Rab4 subfamily. 99.1 3.8E-10 8.3E-15 108.6 11.7 69 152-234 50-121 (161)
77 PF10662 PduV-EutP: Ethanolami 99.1 4.7E-10 1E-14 104.6 11.6 64 154-232 39-103 (143)
78 cd04157 Arl6 Arl6 subfamily. 99.1 9.7E-10 2.1E-14 105.6 14.3 68 152-233 46-119 (162)
79 cd01860 Rab5_related Rab5-rela 99.1 6.1E-10 1.3E-14 107.3 12.7 68 152-232 51-120 (163)
80 cd01850 CDC_Septin CDC/Septin. 99.1 4.7E-10 1E-14 118.0 12.9 81 152-234 64-159 (276)
81 KOG0448 Mitofusin 1 GTPase, in 99.1 1.3E-09 2.9E-14 121.6 16.8 166 45-238 109-281 (749)
82 smart00175 RAB Rab subfamily o 99.1 4.3E-10 9.4E-15 108.3 11.2 67 152-232 50-119 (164)
83 cd04159 Arl10_like Arl10-like 99.1 1.1E-09 2.3E-14 104.3 13.8 69 152-234 45-117 (159)
84 cd04127 Rab27A Rab27a subfamil 99.1 1.5E-09 3.2E-14 106.7 15.0 68 152-233 64-135 (180)
85 PF04548 AIG1: AIG1 family; I 99.1 4.4E-10 9.5E-15 113.9 11.3 148 47-258 2-163 (212)
86 cd01890 LepA LepA subfamily. 99.1 7E-10 1.5E-14 108.8 12.4 66 152-232 68-133 (179)
87 cd04101 RabL4 RabL4 (Rab-like4 99.1 1.1E-09 2.4E-14 105.6 13.5 67 152-233 53-122 (164)
88 smart00173 RAS Ras subfamily o 99.1 5.7E-10 1.2E-14 107.7 11.3 68 152-233 49-120 (164)
89 cd04106 Rab23_lke Rab23-like s 99.1 7.2E-10 1.6E-14 106.7 11.9 69 152-234 52-122 (162)
90 cd01891 TypA_BipA TypA (tyrosi 99.1 1.7E-09 3.7E-14 107.9 14.9 67 152-233 66-132 (194)
91 cd01862 Rab7 Rab7 subfamily. 99.1 7.3E-10 1.6E-14 107.6 11.9 67 152-232 50-123 (172)
92 cd01881 Obg_like The Obg-like 99.1 4.8E-10 1.1E-14 109.2 10.6 21 50-70 1-21 (176)
93 cd04169 RF3 RF3 subfamily. Pe 99.1 1.5E-09 3.2E-14 113.8 14.8 137 46-234 3-139 (267)
94 cd04123 Rab21 Rab21 subfamily. 99.1 8.4E-10 1.8E-14 105.8 12.0 68 152-233 50-120 (162)
95 cd04138 H_N_K_Ras_like H-Ras/N 99.1 7.3E-10 1.6E-14 106.2 11.4 69 152-233 50-121 (162)
96 cd01864 Rab19 Rab19 subfamily. 99.1 1E-09 2.3E-14 106.2 12.0 69 152-233 53-123 (165)
97 cd01879 FeoB Ferrous iron tran 99.1 8.7E-10 1.9E-14 105.4 11.3 71 152-233 44-116 (158)
98 cd04168 TetM_like Tet(M)-like 99.1 1.4E-09 3E-14 112.0 13.5 68 152-234 65-132 (237)
99 cd04139 RalA_RalB RalA/RalB su 99.1 8.9E-10 1.9E-14 105.9 11.3 68 152-232 49-119 (164)
100 cd04175 Rap1 Rap1 subgroup. T 99.1 1.1E-09 2.3E-14 105.9 11.5 68 152-233 50-121 (164)
101 cd04166 CysN_ATPS CysN_ATPS su 99.1 9.8E-10 2.1E-14 111.1 11.6 84 134-233 61-145 (208)
102 cd04140 ARHI_like ARHI subfami 99.1 1E-09 2.2E-14 106.4 11.1 68 152-232 50-122 (165)
103 cd04114 Rab30 Rab30 subfamily. 99.0 1.4E-09 3E-14 105.5 11.9 69 152-233 57-127 (169)
104 cd04120 Rab12 Rab12 subfamily. 99.0 8.5E-10 1.8E-14 110.8 10.5 68 152-232 50-119 (202)
105 PF05049 IIGP: Interferon-indu 99.0 3.3E-10 7.2E-15 121.9 7.9 133 21-230 16-153 (376)
106 cd04151 Arl1 Arl1 subfamily. 99.0 2.5E-09 5.5E-14 102.7 13.2 69 152-233 44-115 (158)
107 TIGR02528 EutP ethanolamine ut 99.0 1.2E-09 2.7E-14 102.8 10.8 24 47-70 2-25 (142)
108 cd04160 Arfrp1 Arfrp1 subfamil 99.0 3.4E-09 7.4E-14 102.6 13.8 68 152-233 51-122 (167)
109 cd00876 Ras Ras family. The R 99.0 1.7E-09 3.7E-14 103.5 11.5 67 152-232 48-118 (160)
110 cd04154 Arl2 Arl2 subfamily. 99.0 3.1E-09 6.7E-14 103.9 13.4 68 152-233 59-130 (173)
111 cd01886 EF-G Elongation factor 99.0 1.5E-09 3.3E-14 113.8 11.8 83 135-233 49-131 (270)
112 PTZ00369 Ras-like protein; Pro 99.0 1.8E-09 4E-14 107.2 11.6 68 152-232 54-124 (189)
113 cd04176 Rap2 Rap2 subgroup. T 99.0 1.2E-09 2.6E-14 105.3 10.0 68 152-232 50-120 (163)
114 cd04109 Rab28 Rab28 subfamily. 99.0 2.6E-09 5.6E-14 108.5 12.8 68 152-232 51-123 (215)
115 cd04156 ARLTS1 ARLTS1 subfamil 99.0 4.2E-09 9.1E-14 101.1 13.7 67 152-232 45-115 (160)
116 smart00178 SAR Sar1p-like memb 99.0 2.8E-09 6E-14 105.6 12.6 112 45-232 17-132 (184)
117 cd00878 Arf_Arl Arf (ADP-ribos 99.0 4.4E-09 9.6E-14 100.8 13.6 69 152-234 44-116 (158)
118 cd04125 RabA_like RabA-like su 99.0 2.5E-09 5.4E-14 106.1 12.0 67 152-232 50-119 (188)
119 cd01863 Rab18 Rab18 subfamily. 99.0 3.5E-09 7.6E-14 101.8 12.7 68 152-233 50-121 (161)
120 COG0370 FeoB Fe2+ transport sy 99.0 3E-09 6.5E-14 120.2 13.7 99 152-263 51-152 (653)
121 cd04144 Ras2 Ras2 subfamily. 99.0 2.9E-09 6.2E-14 105.9 12.2 68 152-232 48-120 (190)
122 PRK15467 ethanolamine utilizat 99.0 5.4E-09 1.2E-13 100.9 13.6 23 47-69 3-25 (158)
123 cd01893 Miro1 Miro1 subfamily. 99.0 2.6E-09 5.6E-14 103.7 11.3 68 152-234 48-119 (166)
124 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 3.1E-09 6.7E-14 104.0 11.9 68 152-232 51-121 (172)
125 PLN03108 Rab family protein; P 99.0 3.1E-09 6.8E-14 107.5 12.2 69 152-233 56-126 (210)
126 cd04170 EF-G_bact Elongation f 99.0 4.1E-09 8.9E-14 110.8 13.5 69 151-234 64-132 (268)
127 cd01884 EF_Tu EF-Tu subfamily. 99.0 2.8E-09 6.1E-14 106.4 11.6 82 135-232 50-132 (195)
128 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 3.5E-09 7.5E-14 103.4 12.0 69 152-233 50-121 (170)
129 PLN03118 Rab family protein; P 99.0 2.8E-09 6E-14 107.9 11.5 69 152-233 63-135 (211)
130 cd04118 Rab24 Rab24 subfamily. 99.0 2.9E-09 6.2E-14 106.0 11.4 67 152-233 51-120 (193)
131 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 3.8E-09 8.3E-14 104.4 12.0 67 152-232 53-123 (183)
132 cd04111 Rab39 Rab39 subfamily. 99.0 4.5E-09 9.7E-14 106.5 12.7 68 152-233 53-124 (211)
133 cd04161 Arl2l1_Arl13_like Arl2 99.0 1E-08 2.2E-13 99.8 14.8 69 152-234 44-116 (167)
134 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 3.5E-09 7.6E-14 106.3 11.4 67 152-232 51-124 (201)
135 cd04124 RabL2 RabL2 subfamily. 99.0 3E-09 6.5E-14 102.7 10.5 65 152-231 50-117 (161)
136 cd00879 Sar1 Sar1 subfamily. 99.0 8.5E-09 1.8E-13 102.3 14.0 115 43-232 17-134 (190)
137 cd04137 RheB Rheb (Ras Homolog 99.0 4E-09 8.7E-14 103.6 11.4 68 152-233 50-121 (180)
138 PF00009 GTP_EFTU: Elongation 99.0 1.7E-09 3.6E-14 107.5 8.6 81 136-231 54-135 (188)
139 cd04115 Rab33B_Rab33A Rab33B/R 99.0 4.6E-09 9.9E-14 102.4 11.5 70 152-234 52-125 (170)
140 cd04162 Arl9_Arfrp2_like Arl9/ 99.0 1.1E-08 2.3E-13 99.4 13.9 69 152-234 45-115 (164)
141 cd04165 GTPBP1_like GTPBP1-lik 99.0 5.4E-09 1.2E-13 106.7 12.3 71 150-234 83-154 (224)
142 cd04110 Rab35 Rab35 subfamily. 98.9 5.7E-09 1.2E-13 104.7 12.1 68 152-233 56-125 (199)
143 cd04177 RSR1 RSR1 subgroup. R 98.9 4.3E-09 9.3E-14 102.3 10.8 69 152-233 50-121 (168)
144 PLN03110 Rab GTPase; Provision 98.9 6E-09 1.3E-13 105.9 12.3 68 152-232 62-131 (216)
145 cd04149 Arf6 Arf6 subfamily. 98.9 1.3E-08 2.8E-13 99.2 14.1 68 152-233 54-125 (168)
146 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.9 1.3E-08 2.8E-13 99.7 14.1 68 152-233 60-131 (174)
147 cd04116 Rab9 Rab9 subfamily. 98.9 9.6E-09 2.1E-13 99.8 13.0 68 152-232 55-128 (170)
148 TIGR00491 aIF-2 translation in 98.9 6.3E-09 1.4E-13 119.8 13.2 134 43-232 2-135 (590)
149 cd00157 Rho Rho (Ras homology) 98.9 2.2E-09 4.7E-14 104.2 8.0 24 47-70 2-25 (171)
150 cd04150 Arf1_5_like Arf1-Arf5- 98.9 2E-08 4.2E-13 96.9 14.2 68 152-233 45-116 (159)
151 CHL00189 infB translation init 98.9 9.5E-09 2.1E-13 120.2 13.9 67 152-233 296-362 (742)
152 cd04117 Rab15 Rab15 subfamily. 98.9 1.2E-08 2.6E-13 98.5 12.3 68 152-233 50-120 (161)
153 cd04147 Ras_dva Ras-dva subfam 98.9 8.4E-09 1.8E-13 103.3 11.6 67 152-232 48-118 (198)
154 cd04146 RERG_RasL11_like RERG/ 98.9 3.7E-09 8.1E-14 102.3 8.6 68 152-232 48-120 (165)
155 TIGR00487 IF-2 translation ini 98.9 1.2E-08 2.6E-13 117.7 14.2 117 43-232 85-201 (587)
156 TIGR00993 3a0901s04IAP86 chlor 98.9 2.1E-08 4.5E-13 113.3 15.1 125 46-233 119-251 (763)
157 cd01889 SelB_euk SelB subfamil 98.9 1.7E-08 3.7E-13 100.6 12.8 67 152-233 69-135 (192)
158 PRK05306 infB translation init 98.9 1.2E-08 2.6E-13 120.4 13.6 116 43-232 288-403 (787)
159 smart00174 RHO Rho (Ras homolo 98.9 3E-09 6.5E-14 103.8 7.2 68 152-233 47-117 (174)
160 cd04132 Rho4_like Rho4-like su 98.9 1E-08 2.3E-13 101.4 11.1 67 152-233 50-120 (187)
161 cd00882 Ras_like_GTPase Ras-li 98.9 1.2E-08 2.7E-13 95.1 10.7 70 152-235 46-119 (157)
162 cd04158 ARD1 ARD1 subfamily. 98.9 2.6E-08 5.7E-13 97.0 13.3 68 152-233 44-115 (169)
163 cd01896 DRG The developmentall 98.9 2.3E-08 5.1E-13 102.8 13.1 23 47-69 2-24 (233)
164 cd04143 Rhes_like Rhes_like su 98.9 1.5E-08 3.3E-13 105.0 11.7 24 47-70 2-25 (247)
165 KOG1489 Predicted GTP-binding 98.9 7.6E-09 1.7E-13 106.3 9.2 149 45-263 196-355 (366)
166 cd04102 RabL3 RabL3 (Rab-like3 98.9 5.4E-08 1.2E-12 97.7 15.2 105 152-269 55-184 (202)
167 smart00177 ARF ARF-like small 98.9 3E-08 6.6E-13 97.2 13.1 68 152-233 58-129 (175)
168 cd01885 EF2 EF2 (for archaea a 98.8 2.3E-08 5E-13 101.7 12.4 66 151-231 73-138 (222)
169 cd04105 SR_beta Signal recogni 98.8 3.4E-08 7.4E-13 99.4 13.3 70 152-234 49-125 (203)
170 TIGR00475 selB selenocysteine- 98.8 1.5E-08 3.3E-13 117.3 12.1 69 151-234 50-119 (581)
171 cd04121 Rab40 Rab40 subfamily. 98.8 1.2E-08 2.6E-13 101.4 9.7 66 152-232 56-124 (189)
172 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.8 2.5E-08 5.4E-13 95.7 11.3 71 152-235 72-145 (221)
173 cd01892 Miro2 Miro2 subfamily. 98.8 1.7E-08 3.8E-13 98.4 10.7 68 152-233 55-123 (169)
174 TIGR00231 small_GTP small GTP- 98.8 2.1E-08 4.7E-13 94.7 10.9 29 46-75 2-30 (161)
175 PTZ00133 ADP-ribosylation fact 98.8 5.1E-08 1.1E-12 96.3 14.0 67 152-232 62-132 (182)
176 TIGR00484 EF-G translation elo 98.8 2.2E-08 4.7E-13 118.8 13.2 135 44-234 9-143 (689)
177 cd04148 RGK RGK subfamily. Th 98.8 1.5E-08 3.2E-13 103.4 10.1 24 47-70 2-25 (221)
178 PF00735 Septin: Septin; Inte 98.8 1.2E-08 2.6E-13 107.4 9.3 83 152-236 64-160 (281)
179 cd04155 Arl3 Arl3 subfamily. 98.8 5.3E-08 1.2E-12 94.8 12.9 68 152-233 59-130 (173)
180 cd01870 RhoA_like RhoA-like su 98.8 7E-08 1.5E-12 94.2 13.4 25 46-70 2-26 (175)
181 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 2.4E-08 5.1E-13 102.3 10.4 67 152-232 62-131 (232)
182 PRK00007 elongation factor G; 98.8 3.8E-08 8.3E-13 116.6 13.5 135 44-234 9-143 (693)
183 cd04167 Snu114p Snu114p subfam 98.8 3.9E-08 8.5E-13 99.7 11.7 67 151-232 71-137 (213)
184 PRK04004 translation initiatio 98.8 3.1E-08 6.7E-13 114.5 12.3 66 152-232 72-137 (586)
185 TIGR01393 lepA GTP-binding pro 98.8 4E-08 8.7E-13 113.9 13.2 132 45-232 3-136 (595)
186 cd01874 Cdc42 Cdc42 subfamily. 98.8 2.3E-08 5E-13 98.1 9.5 68 152-233 50-120 (175)
187 PRK12739 elongation factor G; 98.8 3.7E-08 8E-13 116.8 12.8 135 44-234 7-141 (691)
188 PLN03071 GTP-binding nuclear p 98.8 4.1E-08 8.9E-13 100.0 11.4 66 152-232 63-131 (219)
189 cd01888 eIF2_gamma eIF2-gamma 98.8 5.9E-08 1.3E-12 97.7 12.1 67 152-233 84-152 (203)
190 cd04128 Spg1 Spg1p. Spg1p (se 98.8 3.2E-08 6.8E-13 97.9 9.8 67 152-232 50-118 (182)
191 cd04131 Rnd Rnd subfamily. Th 98.8 2.7E-08 5.7E-13 98.0 9.1 67 152-232 50-119 (178)
192 PRK10512 selenocysteinyl-tRNA- 98.8 3.8E-08 8.2E-13 114.4 11.7 97 152-264 52-155 (614)
193 PRK00741 prfC peptide chain re 98.8 8.2E-08 1.8E-12 109.6 14.2 139 44-234 9-147 (526)
194 TIGR00437 feoB ferrous iron tr 98.8 3.8E-08 8.2E-13 114.1 11.6 100 152-265 42-145 (591)
195 cd00877 Ran Ran (Ras-related n 98.7 4.9E-08 1.1E-12 94.9 10.6 66 152-232 50-118 (166)
196 cd04135 Tc10 TC10 subfamily. 98.7 3.3E-08 7.1E-13 96.4 9.4 69 152-234 49-120 (174)
197 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 3.5E-08 7.6E-13 100.5 9.6 68 152-233 50-120 (222)
198 PLN00223 ADP-ribosylation fact 98.7 9.6E-08 2.1E-12 94.3 12.4 68 152-233 62-133 (181)
199 cd01899 Ygr210 Ygr210 subfamil 98.7 5.9E-07 1.3E-11 96.2 19.1 39 48-86 1-39 (318)
200 CHL00071 tufA elongation facto 98.7 4.4E-08 9.6E-13 109.1 11.0 68 151-233 75-143 (409)
201 cd04130 Wrch_1 Wrch-1 subfamil 98.7 5.1E-08 1.1E-12 95.3 10.1 68 152-233 49-119 (173)
202 cd01875 RhoG RhoG subfamily. 98.7 7.8E-08 1.7E-12 95.8 11.6 68 152-233 52-122 (191)
203 cd01883 EF1_alpha Eukaryotic e 98.7 3.1E-08 6.6E-13 101.0 8.8 84 134-232 61-151 (219)
204 PF00071 Ras: Ras family; Int 98.7 4.6E-08 1E-12 94.1 9.5 98 152-262 49-148 (162)
205 PLN03127 Elongation factor Tu; 98.7 5.3E-08 1.2E-12 109.2 11.3 83 134-232 108-191 (447)
206 TIGR02034 CysN sulfate adenyly 98.7 3.7E-08 8.1E-13 109.6 9.9 113 134-264 64-186 (406)
207 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 4.7E-08 1E-12 96.6 9.5 67 152-232 54-123 (182)
208 TIGR00503 prfC peptide chain r 98.7 1.4E-07 2.9E-12 107.9 14.4 138 44-233 10-147 (527)
209 cd04126 Rab20 Rab20 subfamily. 98.7 9.4E-08 2E-12 97.3 11.5 68 152-232 45-114 (220)
210 TIGR01394 TypA_BipA GTP-bindin 98.7 9.3E-08 2E-12 110.6 12.8 68 151-233 64-131 (594)
211 cd04133 Rop_like Rop subfamily 98.7 3.9E-08 8.4E-13 96.7 8.1 68 152-233 50-120 (176)
212 KOG2486 Predicted GTPase [Gene 98.7 5.9E-08 1.3E-12 98.2 9.4 79 152-234 184-264 (320)
213 KOG0078 GTP-binding protein SE 98.7 9.4E-08 2E-12 93.5 10.4 124 42-235 9-134 (207)
214 PRK05433 GTP-binding protein L 98.7 1.5E-07 3.3E-12 109.2 14.1 133 44-232 6-140 (600)
215 cd01871 Rac1_like Rac1-like su 98.7 6.9E-08 1.5E-12 94.7 9.5 67 152-232 50-119 (174)
216 cd04134 Rho3 Rho3 subfamily. 98.7 3.4E-08 7.3E-13 98.2 7.4 69 152-234 49-120 (189)
217 KOG1490 GTP-binding protein CR 98.7 5.1E-08 1.1E-12 105.5 9.0 79 152-235 216-298 (620)
218 PRK05124 cysN sulfate adenylyl 98.7 1.4E-07 3E-12 106.8 13.1 114 134-264 91-214 (474)
219 PRK12317 elongation factor 1-a 98.7 6.3E-08 1.4E-12 108.7 10.2 82 135-232 69-153 (425)
220 PRK10218 GTP-binding protein; 98.7 1E-07 2.2E-12 110.2 11.5 68 151-233 68-135 (607)
221 COG0536 Obg Predicted GTPase [ 98.7 3.4E-07 7.4E-12 95.6 14.1 123 47-235 161-292 (369)
222 KOG0093 GTPase Rab3, small G p 98.7 3.4E-07 7.3E-12 83.7 12.3 70 152-234 71-142 (193)
223 PLN03126 Elongation factor Tu; 98.6 1.6E-07 3.4E-12 106.0 12.1 131 45-233 81-212 (478)
224 COG1100 GTPase SAR1 and relate 98.6 2.2E-07 4.7E-12 94.3 11.8 73 152-237 55-130 (219)
225 KOG0084 GTPase Rab1/YPT1, smal 98.6 1.3E-07 2.9E-12 91.1 9.3 122 44-235 8-131 (205)
226 PRK12736 elongation factor Tu; 98.6 1.9E-07 4.2E-12 103.5 11.9 82 135-232 60-142 (394)
227 PRK05506 bifunctional sulfate 98.6 1.1E-07 2.4E-12 111.8 10.3 66 151-232 104-171 (632)
228 TIGR02836 spore_IV_A stage IV 98.6 4.9E-07 1.1E-11 97.2 13.2 165 28-233 6-195 (492)
229 PRK12735 elongation factor Tu; 98.6 2.1E-07 4.6E-12 103.3 11.0 67 151-232 75-142 (396)
230 PRK00049 elongation factor Tu; 98.6 2.6E-07 5.6E-12 102.5 11.4 82 135-232 60-142 (396)
231 PTZ00258 GTP-binding protein; 98.6 3.2E-07 7E-12 100.2 11.7 44 43-86 19-62 (390)
232 smart00176 RAN Ran (Ras-relate 98.6 2.3E-07 5E-12 93.1 9.9 66 152-232 45-113 (200)
233 cd01873 RhoBTB RhoBTB subfamil 98.6 2.2E-07 4.7E-12 92.9 9.1 65 152-232 67-134 (195)
234 cd01900 YchF YchF subfamily. 98.6 2.6E-07 5.6E-12 96.6 10.0 39 48-86 1-39 (274)
235 PRK13351 elongation factor G; 98.6 4.5E-07 9.8E-12 107.8 13.2 134 44-233 7-140 (687)
236 PF08477 Miro: Miro-like prote 98.6 5.4E-08 1.2E-12 88.7 4.1 24 47-70 1-24 (119)
237 COG5019 CDC3 Septin family pro 98.5 4E-07 8.8E-12 96.1 11.1 83 152-236 83-180 (373)
238 TIGR00485 EF-Tu translation el 98.5 4.6E-07 1E-11 100.6 11.8 83 135-233 60-143 (394)
239 KOG1547 Septin CDC10 and relat 98.5 7.7E-07 1.7E-11 88.0 11.5 83 152-236 105-202 (336)
240 PTZ00416 elongation factor 2; 98.5 3.7E-07 8E-12 110.1 11.4 65 152-231 93-157 (836)
241 cd01882 BMS1 Bms1. Bms1 is an 98.5 6.4E-07 1.4E-11 91.7 11.4 66 151-234 83-149 (225)
242 PRK09601 GTP-binding protein Y 98.5 6.3E-07 1.4E-11 96.8 11.7 40 46-86 3-43 (364)
243 KOG2655 Septin family protein 98.5 5.7E-07 1.2E-11 95.8 10.6 83 152-236 80-176 (366)
244 COG2229 Predicted GTPase [Gene 98.5 2.9E-06 6.3E-11 81.3 14.0 151 43-258 8-161 (187)
245 PLN00116 translation elongatio 98.5 6.8E-07 1.5E-11 108.0 12.3 65 152-231 99-163 (843)
246 KOG0095 GTPase Rab30, small G 98.5 1.8E-06 3.8E-11 79.1 11.5 122 44-235 6-129 (213)
247 TIGR00490 aEF-2 translation el 98.5 8.1E-07 1.8E-11 105.8 12.2 67 151-232 86-152 (720)
248 PLN00023 GTP-binding protein; 98.5 8.6E-07 1.9E-11 93.9 10.6 68 152-232 84-165 (334)
249 PRK07560 elongation factor EF- 98.4 1E-06 2.2E-11 105.2 12.4 134 44-232 19-153 (731)
250 cd04129 Rho2 Rho2 subfamily. 98.4 8.5E-07 1.8E-11 87.9 9.6 24 47-70 3-26 (187)
251 TIGR03680 eif2g_arch translati 98.4 8.6E-07 1.9E-11 98.8 10.5 67 152-233 81-149 (406)
252 COG1163 DRG Predicted GTPase [ 98.4 4.6E-07 9.9E-12 93.9 6.6 25 46-70 64-88 (365)
253 PRK09602 translation-associate 98.4 1.6E-06 3.5E-11 95.6 11.2 40 46-85 2-41 (396)
254 PF00025 Arf: ADP-ribosylation 98.4 1.5E-06 3.3E-11 85.2 9.5 70 152-235 59-132 (175)
255 TIGR00483 EF-1_alpha translati 98.4 1.2E-06 2.6E-11 98.4 9.8 82 135-232 70-155 (426)
256 KOG0092 GTPase Rab5/YPT51 and 98.4 5.8E-07 1.2E-11 86.5 6.0 88 152-261 55-153 (200)
257 cd04178 Nucleostemin_like Nucl 98.4 1.4E-06 3E-11 85.2 8.6 31 45-75 117-147 (172)
258 cd01858 NGP_1 NGP-1. Autoanti 98.3 6.3E-07 1.4E-11 86.3 5.9 30 46-75 103-132 (157)
259 PRK12740 elongation factor G; 98.3 2.8E-06 6E-11 100.9 12.0 69 151-234 60-128 (668)
260 PF09439 SRPRB: Signal recogni 98.3 1.3E-06 2.9E-11 85.3 7.6 117 45-233 3-127 (181)
261 cd04103 Centaurin_gamma Centau 98.3 3.5E-06 7.5E-11 81.3 10.3 24 47-70 2-25 (158)
262 PRK04000 translation initiatio 98.3 4.7E-06 1E-10 92.9 12.3 23 46-68 10-32 (411)
263 COG4917 EutP Ethanolamine util 98.3 2.1E-06 4.6E-11 76.8 7.5 28 46-73 2-29 (148)
264 KOG0080 GTPase Rab18, small G 98.3 1.8E-06 3.8E-11 80.3 7.2 116 44-231 10-130 (209)
265 cd01849 YlqF_related_GTPase Yl 98.3 1.4E-06 3.1E-11 83.7 6.8 42 43-84 98-140 (155)
266 KOG0091 GTPase Rab39, small G 98.3 5.6E-06 1.2E-10 77.2 10.1 146 46-261 9-159 (213)
267 KOG0098 GTPase Rab2, small G p 98.3 3.8E-06 8.3E-11 80.2 8.9 121 44-235 5-128 (216)
268 PTZ00132 GTP-binding nuclear p 98.3 9.1E-06 2E-10 82.4 12.4 66 152-232 59-127 (215)
269 KOG0075 GTP-binding ADP-ribosy 98.2 4.9E-06 1.1E-10 76.3 8.9 70 152-234 66-138 (186)
270 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.4E-06 5.2E-11 80.7 6.6 24 47-70 85-108 (141)
271 KOG0410 Predicted GTP binding 98.2 1E-05 2.2E-10 83.7 11.4 128 42-233 175-309 (410)
272 PTZ00141 elongation factor 1- 98.2 4.3E-06 9.3E-11 94.0 9.5 81 135-231 70-158 (446)
273 KOG0087 GTPase Rab11/YPT3, sma 98.2 4.5E-06 9.7E-11 81.6 7.5 119 44-232 13-133 (222)
274 TIGR00750 lao LAO/AO transport 98.1 0.00013 2.8E-09 78.0 19.1 25 44-68 33-57 (300)
275 PTZ00327 eukaryotic translatio 98.1 1.1E-05 2.4E-10 90.6 10.9 66 152-233 118-186 (460)
276 cd01851 GBP Guanylate-binding 98.1 1.9E-05 4.2E-10 80.6 11.8 37 45-82 7-47 (224)
277 PLN00043 elongation factor 1-a 98.1 7.8E-06 1.7E-10 91.9 9.5 68 151-232 85-159 (447)
278 cd01855 YqeH YqeH. YqeH is an 98.1 3.7E-06 8E-11 83.6 6.1 25 46-70 128-152 (190)
279 COG0480 FusA Translation elong 98.1 1.2E-05 2.6E-10 93.9 11.1 137 44-235 9-145 (697)
280 PRK09435 membrane ATPase/prote 98.1 7.1E-05 1.5E-09 80.5 15.1 24 45-68 56-79 (332)
281 TIGR03596 GTPase_YlqF ribosome 98.1 1.4E-05 3.1E-10 84.4 9.5 31 45-75 118-148 (276)
282 KOG0086 GTPase Rab4, small G p 98.1 2.6E-05 5.6E-10 71.9 9.5 70 152-234 59-130 (214)
283 KOG0079 GTP-binding protein H- 98.0 2.4E-05 5.2E-10 71.8 8.8 69 152-234 58-128 (198)
284 KOG0073 GTP-binding ADP-ribosy 98.0 3.4E-05 7.3E-10 72.4 9.8 66 152-231 61-130 (185)
285 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.2E-05 2.5E-10 85.5 6.5 30 45-74 121-150 (287)
286 PRK12288 GTPase RsgA; Reviewed 97.9 2.4E-05 5.2E-10 85.0 8.6 25 47-71 207-231 (347)
287 cd01856 YlqF YlqF. Proteins o 97.9 3.3E-05 7.2E-10 75.5 8.9 28 45-72 115-142 (171)
288 TIGR00157 ribosome small subun 97.9 2.5E-05 5.5E-10 80.9 8.4 26 46-71 121-146 (245)
289 COG0532 InfB Translation initi 97.9 5.8E-05 1.3E-09 83.7 11.4 117 43-234 3-123 (509)
290 PRK12289 GTPase RsgA; Reviewed 97.9 1.9E-05 4E-10 85.8 7.4 27 47-73 174-200 (352)
291 KOG1145 Mitochondrial translat 97.9 8.1E-05 1.8E-09 82.0 12.0 118 43-233 151-268 (683)
292 COG5256 TEF1 Translation elong 97.9 5.8E-05 1.3E-09 81.2 10.3 113 135-263 70-199 (428)
293 PF03193 DUF258: Protein of un 97.9 1.4E-05 3E-10 76.7 4.4 26 46-71 36-61 (161)
294 KOG0394 Ras-related GTPase [Ge 97.8 5.3E-05 1.1E-09 72.5 7.6 69 152-233 59-133 (210)
295 COG1161 Predicted GTPases [Gen 97.8 2.5E-05 5.5E-10 84.1 6.2 25 46-70 133-157 (322)
296 KOG0395 Ras-related GTPase [Ge 97.8 5.4E-05 1.2E-09 75.6 7.8 94 152-259 52-149 (196)
297 COG0012 Predicted GTPase, prob 97.8 5.7E-05 1.2E-09 80.7 8.2 104 46-196 3-106 (372)
298 KOG0090 Signal recognition par 97.8 0.0001 2.2E-09 72.4 9.1 71 153-236 84-163 (238)
299 TIGR00092 GTP-binding protein 97.8 9.3E-05 2E-09 80.2 9.8 40 46-85 3-43 (368)
300 TIGR03597 GTPase_YqeH ribosome 97.8 3.4E-05 7.3E-10 84.6 6.1 24 46-69 155-178 (360)
301 KOG4252 GTP-binding protein [S 97.7 4.2E-05 9.1E-10 72.5 5.5 67 153-234 71-140 (246)
302 TIGR01425 SRP54_euk signal rec 97.7 0.00041 8.8E-09 76.9 13.9 76 152-238 184-259 (429)
303 KOG1486 GTP-binding protein DR 97.7 2.8E-05 6E-10 77.7 4.0 24 46-69 63-86 (364)
304 PRK14723 flhF flagellar biosyn 97.7 0.00027 5.8E-09 83.1 12.7 176 47-264 187-367 (767)
305 PRK13796 GTPase YqeH; Provisio 97.7 5.2E-05 1.1E-09 83.2 6.2 23 47-69 162-184 (365)
306 KOG1707 Predicted Ras related/ 97.7 0.00022 4.8E-09 79.5 10.7 119 46-236 10-133 (625)
307 PRK11889 flhF flagellar biosyn 97.7 0.00029 6.2E-09 76.6 11.2 98 152-264 322-421 (436)
308 PRK13768 GTPase; Provisional 97.7 0.0002 4.3E-09 74.7 9.7 75 152-235 98-179 (253)
309 KOG1144 Translation initiation 97.6 0.00073 1.6E-08 76.8 13.8 135 41-231 471-605 (1064)
310 KOG3883 Ras family small GTPas 97.6 0.0008 1.7E-08 62.5 11.7 71 152-236 61-136 (198)
311 COG1162 Predicted GTPases [Gen 97.6 0.00017 3.6E-09 75.5 8.2 23 46-68 165-187 (301)
312 PRK12727 flagellar biosynthesi 97.6 0.0015 3.2E-08 73.8 16.1 98 152-263 430-527 (559)
313 KOG1532 GTPase XAB1, interacts 97.6 0.00043 9.3E-09 70.4 10.2 153 44-234 18-197 (366)
314 cd01859 MJ1464 MJ1464. This f 97.6 0.00032 6.9E-09 67.2 9.2 26 45-70 101-126 (156)
315 PRK00098 GTPase RsgA; Reviewed 97.6 0.0003 6.4E-09 75.2 9.5 25 46-70 165-189 (298)
316 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.0002 4.3E-09 76.1 8.0 25 46-70 162-186 (287)
317 PRK14721 flhF flagellar biosyn 97.5 0.0006 1.3E-08 75.6 11.8 100 152-264 271-370 (420)
318 KOG1491 Predicted GTP-binding 97.5 0.00017 3.6E-09 75.5 6.9 102 43-195 18-122 (391)
319 KOG0097 GTPase Rab14, small G 97.5 0.00058 1.3E-08 62.1 8.8 120 45-234 11-132 (215)
320 PRK12726 flagellar biosynthesi 97.5 0.00074 1.6E-08 73.2 11.0 173 46-262 207-384 (407)
321 cd03112 CobW_like The function 97.4 0.00088 1.9E-08 64.6 10.1 23 46-68 1-23 (158)
322 COG1217 TypA Predicted membran 97.4 0.0006 1.3E-08 74.1 9.6 134 43-236 3-138 (603)
323 PRK10416 signal recognition pa 97.4 0.0009 1.9E-08 71.9 10.9 93 152-255 198-294 (318)
324 KOG0070 GTP-binding ADP-ribosy 97.4 0.0004 8.7E-09 66.9 7.3 70 152-235 62-135 (181)
325 KOG2203 GTP-binding protein [G 97.4 0.056 1.2E-06 60.1 24.4 30 41-70 33-62 (772)
326 PRK14722 flhF flagellar biosyn 97.4 0.00061 1.3E-08 74.4 9.6 22 47-68 139-160 (374)
327 COG4108 PrfC Peptide chain rel 97.4 0.0011 2.5E-08 71.6 11.3 138 46-235 13-150 (528)
328 PRK12723 flagellar biosynthesi 97.4 0.0016 3.4E-08 71.7 12.7 99 152-264 256-356 (388)
329 PF04670 Gtr1_RagA: Gtr1/RagA 97.4 0.00071 1.5E-08 69.2 8.8 75 151-234 48-127 (232)
330 KOG3859 Septins (P-loop GTPase 97.4 0.00077 1.7E-08 68.5 8.7 82 152-235 96-193 (406)
331 PRK06731 flhF flagellar biosyn 97.3 0.0014 3E-08 68.7 11.0 99 152-263 156-254 (270)
332 PRK14845 translation initiatio 97.3 0.00089 1.9E-08 81.6 10.7 68 150-232 525-592 (1049)
333 PRK05703 flhF flagellar biosyn 97.3 0.002 4.2E-08 72.1 12.6 100 152-263 301-400 (424)
334 KOG0081 GTPase Rab27, small G 97.3 0.00027 6E-09 65.7 4.6 93 152-257 68-163 (219)
335 PRK14974 cell division protein 97.3 0.00084 1.8E-08 72.5 8.9 79 152-241 224-302 (336)
336 cd03114 ArgK-like The function 97.3 0.0015 3.3E-08 62.2 9.7 21 48-68 2-22 (148)
337 KOG0462 Elongation factor-type 97.3 0.00065 1.4E-08 75.2 7.6 134 45-234 60-193 (650)
338 PRK00771 signal recognition pa 97.2 0.0011 2.4E-08 74.0 9.6 78 152-240 177-254 (437)
339 KOG0088 GTPase Rab21, small G 97.2 0.0013 2.9E-08 61.3 8.1 69 152-233 63-133 (218)
340 PTZ00099 rab6; Provisional 97.2 0.00083 1.8E-08 66.0 7.3 69 151-232 29-99 (176)
341 COG3276 SelB Selenocysteine-sp 97.2 0.0034 7.4E-08 68.3 12.4 68 152-234 51-119 (447)
342 PF03029 ATP_bind_1: Conserved 97.2 0.00085 1.8E-08 69.2 7.5 36 50-91 1-36 (238)
343 COG0050 TufB GTPases - transla 97.2 0.0024 5.3E-08 65.7 10.4 130 47-234 14-144 (394)
344 PRK12724 flagellar biosynthesi 97.2 0.0044 9.6E-08 68.3 12.8 101 152-263 301-402 (432)
345 PF00448 SRP54: SRP54-type pro 97.2 0.00025 5.4E-09 70.9 2.9 94 152-258 85-178 (196)
346 KOG1143 Predicted translation 97.2 0.00055 1.2E-08 72.1 5.4 144 47-236 169-321 (591)
347 KOG0393 Ras-related small GTPa 97.1 0.00017 3.7E-09 71.1 1.5 114 47-232 6-123 (198)
348 KOG1424 Predicted GTP-binding 97.1 0.00034 7.3E-09 77.0 3.2 26 45-70 314-339 (562)
349 TIGR00064 ftsY signal recognit 97.0 0.0096 2.1E-07 62.7 13.6 81 152-241 156-240 (272)
350 KOG0468 U5 snRNP-specific prot 97.0 0.0025 5.5E-08 71.8 9.0 135 43-231 126-262 (971)
351 PRK06995 flhF flagellar biosyn 97.0 0.014 3E-07 65.9 15.0 100 152-264 336-435 (484)
352 COG5192 BMS1 GTP-binding prote 97.0 0.0031 6.7E-08 69.7 9.4 48 186-235 132-180 (1077)
353 PRK10867 signal recognition pa 97.0 0.0048 1E-07 68.9 11.2 77 152-239 185-261 (433)
354 PF03308 ArgK: ArgK protein; 96.9 0.01 2.3E-07 60.8 11.9 23 45-67 29-51 (266)
355 KOG1487 GTP-binding protein DR 96.9 0.00074 1.6E-08 68.1 3.6 39 46-85 60-101 (358)
356 KOG0074 GTP-binding ADP-ribosy 96.8 0.0042 9.1E-08 57.1 7.6 70 152-234 63-135 (185)
357 KOG0458 Elongation factor 1 al 96.8 0.00081 1.8E-08 75.1 3.4 113 134-262 239-369 (603)
358 cd03115 SRP The signal recogni 96.8 0.0065 1.4E-07 59.2 9.3 76 152-238 84-159 (173)
359 PF05879 RHD3: Root hair defec 96.8 0.42 9.2E-06 57.4 25.9 24 51-75 1-24 (742)
360 KOG0464 Elongation factor G [T 96.7 0.00056 1.2E-08 72.7 1.5 133 45-235 37-171 (753)
361 KOG2484 GTPase [General functi 96.7 0.0013 2.9E-08 70.4 4.2 30 46-75 253-282 (435)
362 COG1703 ArgK Putative periplas 96.7 0.086 1.9E-06 55.1 17.1 24 44-67 50-73 (323)
363 KOG0461 Selenocysteine-specifi 96.7 0.011 2.3E-07 62.2 10.0 67 152-237 71-141 (522)
364 COG1419 FlhF Flagellar GTP-bin 96.6 0.011 2.4E-07 64.4 10.2 175 46-264 204-382 (407)
365 KOG0076 GTP-binding ADP-ribosy 96.6 0.0045 9.8E-08 59.0 6.1 71 152-235 70-143 (197)
366 KOG2485 Conserved ATP/GTP bind 96.5 0.0057 1.2E-07 63.8 7.0 26 44-69 142-167 (335)
367 KOG4181 Uncharacterized conser 96.5 0.028 6.1E-07 59.2 11.9 27 43-69 186-212 (491)
368 KOG0467 Translation elongation 96.5 0.0044 9.4E-08 71.2 6.5 130 44-231 8-137 (887)
369 TIGR00959 ffh signal recogniti 96.5 0.012 2.6E-07 65.7 9.8 91 152-255 184-274 (428)
370 TIGR03348 VI_IcmF type VI secr 96.5 0.089 1.9E-06 66.5 18.5 31 42-74 108-138 (1169)
371 KOG0071 GTP-binding ADP-ribosy 96.4 0.055 1.2E-06 49.9 11.5 70 153-235 63-135 (180)
372 KOG0077 Vesicle coat complex C 96.4 0.018 3.9E-07 54.6 8.5 72 152-237 65-140 (193)
373 COG3640 CooC CO dehydrogenase 96.3 0.0094 2E-07 60.0 7.0 85 152-260 135-221 (255)
374 COG0481 LepA Membrane GTPase L 96.3 0.0087 1.9E-07 65.5 7.0 87 135-236 58-146 (603)
375 COG0541 Ffh Signal recognition 96.2 0.23 4.9E-06 54.6 17.0 75 152-238 184-259 (451)
376 COG1136 SalX ABC-type antimicr 96.1 0.011 2.3E-07 60.0 6.2 53 175-228 148-202 (226)
377 PRK01889 GTPase RsgA; Reviewed 96.0 0.011 2.4E-07 64.7 6.3 24 47-70 197-220 (356)
378 KOG0083 GTPase Rab26/Rab37, sm 95.9 0.0033 7.2E-08 56.9 1.2 69 152-233 48-118 (192)
379 KOG2423 Nucleolar GTPase [Gene 95.8 0.019 4E-07 61.5 6.7 24 47-70 309-332 (572)
380 COG5257 GCD11 Translation init 95.7 0.077 1.7E-06 55.7 10.5 41 47-89 12-52 (415)
381 COG2895 CysN GTPases - Sulfate 95.7 0.083 1.8E-06 56.2 10.6 146 43-236 4-157 (431)
382 KOG0072 GTP-binding ADP-ribosy 95.6 0.066 1.4E-06 49.6 8.2 71 152-235 63-136 (182)
383 KOG0780 Signal recognition par 95.0 0.03 6.5E-07 60.0 5.0 76 152-238 185-260 (483)
384 COG5258 GTPBP1 GTPase [General 95.0 0.027 5.8E-07 60.2 4.6 68 153-234 203-271 (527)
385 PF13555 AAA_29: P-loop contai 94.9 0.028 6.1E-07 44.9 3.3 20 47-66 25-44 (62)
386 TIGR02868 CydC thiol reductant 94.8 0.21 4.6E-06 57.8 12.0 52 174-227 475-527 (529)
387 COG3840 ThiQ ABC-type thiamine 94.8 0.025 5.3E-07 54.9 3.4 28 47-75 27-54 (231)
388 cd01859 MJ1464 MJ1464. This f 94.7 0.043 9.3E-07 52.4 5.0 54 177-232 2-55 (156)
389 COG1101 PhnK ABC-type uncharac 94.7 0.027 5.9E-07 56.0 3.4 27 47-74 34-60 (263)
390 cd00071 GMPK Guanosine monopho 94.4 0.039 8.4E-07 51.8 3.6 21 48-68 2-22 (137)
391 COG0552 FtsY Signal recognitio 94.4 0.1 2.2E-06 55.5 7.0 78 152-237 223-303 (340)
392 TIGR02203 MsbA_lipidA lipid A 94.4 0.25 5.4E-06 57.8 11.2 23 47-69 360-382 (571)
393 PF00005 ABC_tran: ABC transpo 94.3 0.032 7E-07 51.8 3.0 23 47-69 13-35 (137)
394 COG3523 IcmF Type VI protein s 94.3 0.95 2.1E-05 56.3 16.0 29 41-70 121-149 (1188)
395 KOG0463 GTP-binding protein GP 94.3 0.053 1.1E-06 57.6 4.6 24 46-69 134-157 (641)
396 KOG0460 Mitochondrial translat 94.3 0.11 2.5E-06 54.8 6.9 131 47-235 56-187 (449)
397 cd01857 HSR1_MMR1 HSR1/MMR1. 94.1 0.062 1.3E-06 50.5 4.5 52 180-233 4-57 (141)
398 TIGR03499 FlhF flagellar biosy 94.0 0.079 1.7E-06 56.1 5.5 22 47-68 196-217 (282)
399 PF13521 AAA_28: AAA domain; P 94.0 0.032 6.8E-07 53.8 2.2 22 47-68 1-22 (163)
400 cd03280 ABC_MutS2 MutS2 homolo 93.9 0.8 1.7E-05 45.8 12.3 20 47-66 30-49 (200)
401 COG1341 Predicted GTPase or GT 93.9 0.4 8.7E-06 52.3 10.5 25 44-68 72-96 (398)
402 PF03205 MobB: Molybdopterin g 93.8 0.047 1E-06 51.5 3.0 23 46-68 1-23 (140)
403 TIGR03263 guanyl_kin guanylate 93.8 0.063 1.4E-06 52.5 3.9 22 47-68 3-24 (180)
404 KOG0057 Mitochondrial Fe/S clu 93.8 0.29 6.2E-06 55.2 9.3 58 175-234 493-552 (591)
405 COG1116 TauB ABC-type nitrate/ 93.7 0.061 1.3E-06 54.9 3.7 27 47-74 31-57 (248)
406 PRK11174 cysteine/glutathione 93.7 0.6 1.3E-05 54.9 12.6 25 47-73 378-402 (588)
407 COG4107 PhnK ABC-type phosphon 93.7 0.06 1.3E-06 51.7 3.3 30 47-78 34-63 (258)
408 COG0194 Gmk Guanylate kinase [ 93.6 0.049 1.1E-06 53.2 2.7 36 47-82 6-41 (191)
409 cd01130 VirB11-like_ATPase Typ 93.6 0.061 1.3E-06 53.2 3.4 22 47-68 27-48 (186)
410 PRK11537 putative GTP-binding 93.4 0.44 9.5E-06 51.4 9.8 25 44-68 3-27 (318)
411 PRK00300 gmk guanylate kinase; 93.3 0.072 1.6E-06 53.4 3.5 36 47-82 7-43 (205)
412 cd03225 ABC_cobalt_CbiO_domain 93.3 0.076 1.6E-06 53.5 3.7 23 47-69 29-51 (211)
413 COG3910 Predicted ATPase [Gene 93.2 0.1 2.2E-06 51.0 4.1 34 42-75 34-68 (233)
414 cd03261 ABC_Org_Solvent_Resist 93.2 0.078 1.7E-06 54.4 3.6 23 47-69 28-50 (235)
415 PRK14737 gmk guanylate kinase; 93.1 0.098 2.1E-06 51.8 4.1 22 47-68 6-27 (186)
416 PRK01889 GTPase RsgA; Reviewed 93.1 0.047 1E-06 59.8 2.0 48 185-233 110-157 (356)
417 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.1 0.08 1.7E-06 53.6 3.6 23 47-69 32-54 (218)
418 COG0410 LivF ABC-type branched 93.1 0.086 1.9E-06 53.1 3.6 23 47-69 31-53 (237)
419 cd03264 ABC_drug_resistance_li 93.0 0.088 1.9E-06 53.1 3.6 23 47-69 27-49 (211)
420 TIGR00958 3a01208 Conjugate Tr 92.9 0.94 2E-05 54.6 12.8 23 47-69 509-531 (711)
421 COG4559 ABC-type hemin transpo 92.9 0.1 2.2E-06 52.0 3.6 26 47-73 29-54 (259)
422 TIGR02673 FtsE cell division A 92.9 0.095 2.1E-06 52.9 3.7 23 47-69 30-52 (214)
423 TIGR01360 aden_kin_iso1 adenyl 92.8 0.085 1.8E-06 51.8 3.2 26 44-69 2-30 (188)
424 cd03224 ABC_TM1139_LivF_branch 92.8 0.095 2.1E-06 53.2 3.7 23 47-69 28-50 (222)
425 PF02263 GBP: Guanylate-bindin 92.8 0.2 4.3E-06 52.5 6.0 24 45-68 21-44 (260)
426 PRK13541 cytochrome c biogenes 92.8 0.1 2.3E-06 51.9 3.8 23 47-69 28-50 (195)
427 cd03243 ABC_MutS_homologs The 92.8 2.1 4.5E-05 42.8 13.3 23 47-69 31-53 (202)
428 cd01858 NGP_1 NGP-1. Autoanti 92.8 0.12 2.5E-06 49.6 3.9 50 182-233 3-54 (157)
429 cd03215 ABC_Carb_Monos_II This 92.7 0.11 2.4E-06 51.1 3.9 23 47-69 28-50 (182)
430 cd03226 ABC_cobalt_CbiO_domain 92.7 0.1 2.2E-06 52.4 3.6 23 47-69 28-50 (205)
431 cd03218 ABC_YhbG The ABC trans 92.7 0.11 2.3E-06 53.2 3.9 23 47-69 28-50 (232)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.7 0.09 2E-06 49.7 3.1 23 47-69 28-50 (144)
433 TIGR00157 ribosome small subun 92.7 0.072 1.6E-06 55.2 2.5 89 174-263 23-111 (245)
434 cd03259 ABC_Carb_Solutes_like 92.6 0.1 2.2E-06 52.6 3.6 23 47-69 28-50 (213)
435 cd03258 ABC_MetN_methionine_tr 92.6 0.11 2.3E-06 53.3 3.7 23 47-69 33-55 (233)
436 PRK13851 type IV secretion sys 92.6 0.099 2.1E-06 56.8 3.5 31 47-79 164-194 (344)
437 cd03229 ABC_Class3 This class 92.6 0.12 2.6E-06 50.7 3.8 23 47-69 28-50 (178)
438 PRK11629 lolD lipoprotein tran 92.6 0.1 2.2E-06 53.5 3.5 23 47-69 37-59 (233)
439 TIGR01166 cbiO cobalt transpor 92.5 0.1 2.2E-06 51.7 3.3 23 47-69 20-42 (190)
440 cd03222 ABC_RNaseL_inhibitor T 92.5 0.091 2E-06 51.6 2.9 23 47-69 27-49 (177)
441 cd03262 ABC_HisP_GlnQ_permease 92.5 0.11 2.5E-06 52.2 3.7 23 47-69 28-50 (213)
442 TIGR01193 bacteriocin_ABC ABC- 92.5 1.7 3.6E-05 52.4 14.2 23 47-69 502-524 (708)
443 cd03266 ABC_NatA_sodium_export 92.5 0.11 2.5E-06 52.5 3.6 23 47-69 33-55 (218)
444 KOG3886 GTP-binding protein [S 92.4 0.21 4.6E-06 50.1 5.2 76 153-237 55-135 (295)
445 COG1120 FepC ABC-type cobalami 92.4 0.12 2.6E-06 53.5 3.7 22 47-68 30-51 (258)
446 cd03231 ABC_CcmA_heme_exporter 92.4 0.13 2.9E-06 51.4 3.9 23 47-69 28-50 (201)
447 PRK15177 Vi polysaccharide exp 92.3 0.13 2.7E-06 52.1 3.8 30 47-78 15-44 (213)
448 cd03254 ABCC_Glucan_exporter_l 92.3 0.12 2.7E-06 52.7 3.7 23 47-69 31-53 (229)
449 cd03256 ABC_PhnC_transporter A 92.3 0.12 2.6E-06 53.2 3.7 23 47-69 29-51 (241)
450 PF05621 TniB: Bacterial TniB 92.3 0.66 1.4E-05 49.1 9.1 59 23-86 43-101 (302)
451 cd03369 ABCC_NFT1 Domain 2 of 92.3 0.12 2.7E-06 51.8 3.6 23 47-69 36-58 (207)
452 TIGR00960 3a0501s02 Type II (G 92.3 0.11 2.3E-06 52.6 3.1 23 47-69 31-53 (216)
453 cd00267 ABC_ATPase ABC (ATP-bi 92.2 0.14 3.1E-06 48.9 3.8 24 46-69 26-49 (157)
454 TIGR03796 NHPM_micro_ABC1 NHPM 92.2 0.92 2E-05 54.6 11.6 51 174-227 620-670 (710)
455 cd03232 ABC_PDR_domain2 The pl 92.2 0.14 2.9E-06 51.0 3.8 23 47-69 35-57 (192)
456 PRK13543 cytochrome c biogenes 92.2 0.13 2.9E-06 52.0 3.8 23 47-69 39-61 (214)
457 cd02019 NK Nucleoside/nucleoti 92.2 0.13 2.8E-06 42.0 3.0 21 48-68 2-22 (69)
458 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.2 0.12 2.7E-06 53.0 3.6 23 47-69 31-53 (238)
459 cd03219 ABC_Mj1267_LivG_branch 92.2 0.13 2.8E-06 52.7 3.7 23 47-69 28-50 (236)
460 PRK13540 cytochrome c biogenes 92.2 0.14 3E-06 51.2 3.9 24 46-69 28-51 (200)
461 cd03268 ABC_BcrA_bacitracin_re 92.2 0.13 2.8E-06 51.7 3.6 23 47-69 28-50 (208)
462 PF13207 AAA_17: AAA domain; P 92.2 0.12 2.6E-06 46.8 3.0 22 47-68 1-22 (121)
463 TIGR01978 sufC FeS assembly AT 92.1 0.14 3E-06 52.8 3.8 22 47-68 28-49 (243)
464 cd03263 ABC_subfamily_A The AB 92.1 0.11 2.4E-06 52.6 3.1 23 47-69 30-52 (220)
465 cd03269 ABC_putative_ATPase Th 92.1 0.11 2.5E-06 52.2 3.2 23 47-69 28-50 (210)
466 cd03265 ABC_DrrA DrrA is the A 92.1 0.12 2.6E-06 52.5 3.3 23 47-69 28-50 (220)
467 cd03257 ABC_NikE_OppD_transpor 92.1 0.13 2.9E-06 52.3 3.7 23 47-69 33-55 (228)
468 cd01856 YlqF YlqF. Proteins o 92.1 0.23 5E-06 48.3 5.2 54 176-233 8-61 (171)
469 cd03217 ABC_FeS_Assembly ABC-t 92.1 0.15 3.3E-06 50.9 4.0 23 47-69 28-50 (200)
470 cd03238 ABC_UvrA The excision 92.1 0.12 2.6E-06 50.7 3.1 21 47-67 23-43 (176)
471 cd03301 ABC_MalK_N The N-termi 92.1 0.13 2.9E-06 51.7 3.6 23 47-69 28-50 (213)
472 cd03235 ABC_Metallic_Cations A 92.1 0.13 2.9E-06 51.8 3.6 23 47-69 27-49 (213)
473 PRK12289 GTPase RsgA; Reviewed 92.1 0.13 2.8E-06 56.1 3.7 56 178-233 80-135 (352)
474 PRK14250 phosphate ABC transpo 92.1 0.14 3E-06 52.9 3.7 23 47-69 31-53 (241)
475 PLN03232 ABC transporter C fam 92.0 2 4.2E-05 56.2 14.8 23 47-69 645-667 (1495)
476 PRK13695 putative NTPase; Prov 92.0 0.49 1.1E-05 46.1 7.4 55 172-228 81-136 (174)
477 cd03216 ABC_Carb_Monos_I This 92.0 0.13 2.8E-06 49.7 3.3 23 47-69 28-50 (163)
478 PRK13651 cobalt transporter AT 92.0 0.13 2.9E-06 55.1 3.6 23 47-69 35-57 (305)
479 PRK10895 lipopolysaccharide AB 92.0 0.14 3E-06 52.7 3.7 23 47-69 31-53 (241)
480 PRK11248 tauB taurine transpor 92.0 0.14 3E-06 53.4 3.7 23 47-69 29-51 (255)
481 PRK13539 cytochrome c biogenes 92.0 0.15 3.3E-06 51.2 3.9 23 47-69 30-52 (207)
482 PRK10908 cell division protein 92.0 0.14 3E-06 52.1 3.6 23 47-69 30-52 (222)
483 TIGR03608 L_ocin_972_ABC putat 92.0 0.14 2.9E-06 51.4 3.4 23 47-69 26-48 (206)
484 TIGR02315 ABC_phnC phosphonate 92.0 0.12 2.6E-06 53.3 3.1 23 47-69 30-52 (243)
485 cd03253 ABCC_ATM1_transporter 92.0 0.14 3E-06 52.5 3.6 23 47-69 29-51 (236)
486 cd03293 ABC_NrtD_SsuB_transpor 91.9 0.13 2.8E-06 52.2 3.3 23 47-69 32-54 (220)
487 cd03245 ABCC_bacteriocin_expor 91.9 0.15 3.2E-06 51.7 3.7 23 47-69 32-54 (220)
488 COG1121 ZnuC ABC-type Mn/Zn tr 91.9 0.13 2.8E-06 53.1 3.1 22 47-68 32-53 (254)
489 CHL00131 ycf16 sulfate ABC tra 91.8 0.15 3.3E-06 52.8 3.8 22 47-68 35-56 (252)
490 PRK15112 antimicrobial peptide 91.8 0.16 3.4E-06 53.4 3.9 23 47-69 41-63 (267)
491 TIGR03410 urea_trans_UrtE urea 91.8 0.16 3.5E-06 51.9 3.9 23 47-69 28-50 (230)
492 cd03251 ABCC_MsbA MsbA is an e 91.8 0.15 3.2E-06 52.3 3.6 23 47-69 30-52 (234)
493 PRK13641 cbiO cobalt transport 91.8 0.15 3.2E-06 54.2 3.7 23 47-69 35-57 (287)
494 cd03292 ABC_FtsE_transporter F 91.8 0.14 2.9E-06 51.7 3.3 23 47-69 29-51 (214)
495 PF13671 AAA_33: AAA domain; P 91.8 0.13 2.7E-06 48.1 2.8 21 48-68 2-22 (143)
496 cd03260 ABC_PstB_phosphate_tra 91.8 0.13 2.7E-06 52.6 3.0 23 47-69 28-50 (227)
497 cd03298 ABC_ThiQ_thiamine_tran 91.8 0.17 3.6E-06 51.0 3.9 23 47-69 26-48 (211)
498 PRK10751 molybdopterin-guanine 91.8 0.13 2.7E-06 50.3 2.8 25 44-68 5-29 (173)
499 PRK10078 ribose 1,5-bisphospho 91.8 0.14 2.9E-06 50.7 3.1 23 47-69 4-26 (186)
500 TIGR02324 CP_lyasePhnL phospho 91.7 0.16 3.5E-06 51.7 3.7 23 47-69 36-58 (224)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=8.9e-102 Score=882.31 Aligned_cols=649 Identities=40% Similarity=0.572 Sum_probs=577.9
Q ss_pred hhhhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCC
Q 045702 17 TIGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGD 96 (728)
Q Consensus 17 ~~~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~ 96 (728)
..|+.+++.+|+++|.+..+ |.+..+.+|+|+|||+||+||||++|+|+|++|||||.|+|||+|.+++|.+.....
T Consensus 2 ~~~~~li~~vn~lqd~~~~l-~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~-- 78 (657)
T KOG0446|consen 2 GLMRLLIPLSNPLQDKLEIL-GSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGD-- 78 (657)
T ss_pred chhhhccccchHHHHHHHHh-cCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCc--
Confidence 56899999999999999999 877789999999999999999999999999999999999999999999999876532
Q ss_pred Cccchhhhc-cCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHH
Q 045702 97 DGREWAEFR-HLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEA 175 (728)
Q Consensus 97 ~~~~~~~~~-~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~ 175 (728)
.+|++|. |.++..+.||++++++|+.++++.+|.++++|+.+|.+.+++|++++||+||+||++++++++||.+++.
T Consensus 79 --~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~ 156 (657)
T KOG0446|consen 79 --EEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEE 156 (657)
T ss_pred --ccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHH
Confidence 5899998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEe
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGV 255 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 255 (728)
.++.|+..|+..+++|||+|.+||.|+++++++++++++||.|.|||+|+||+|+++.|+++...+.|..+++++||++|
T Consensus 157 qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~v 236 (657)
T KOG0446|consen 157 EIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGV 236 (657)
T ss_pred HHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 045702 256 VNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKY 335 (728)
Q Consensus 256 ~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~l 335 (728)
+||+|++++..+++.+++..|..||.+||.|+.+..++|+++|.+.|+..|..||++++|.|...|+.++.+++.+|..|
T Consensus 237 vnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~ 316 (657)
T KOG0446|consen 237 VNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRI 316 (657)
T ss_pred eccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHh
Q 045702 336 GDVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNA 415 (728)
Q Consensus 336 g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~G~~~~~~~~~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~ 415 (728)
|. ..........++.++..|+..+...+.|..+..++.++.||+||+++|+.+|...+.+++|++.+...+|++++.++
T Consensus 317 g~-~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~ 395 (657)
T KOG0446|consen 317 GA-VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEA 395 (657)
T ss_pred cc-cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhc
Confidence 97 33333556778999999999999999999887667789999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHhHHHHHH
Q 045702 416 TGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVT-ELQRFPVLRRHLDDVMGKFIRDSVRPAER 494 (728)
Q Consensus 416 ~G~~~~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~~~~~~-~~~rfp~L~~~i~~~v~~~l~~~~~~a~~ 494 (728)
+|.++++|+|+.+|+.+|++||+++++||++|++.|++++.+++++|... ++.|||.|++.+..++.+.+++++.++++
T Consensus 396 ~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~ 475 (657)
T KOG0446|consen 396 SGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKK 475 (657)
T ss_pred cCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999776 89999999999999999999999999999
Q ss_pred HHHHHHHHHhCcccCCCccccchhH-HHHHHHHHhhhccCCCCCCCCCcccccccccCCCCCCCCcccccccccCCCCCC
Q 045702 495 MIDSLIEIEMDYINSSNPNFVGGKK-AVEVAMQQLKSSQDGTDGEKGTLSEIGQRFGLTSQGRHSQSNNQRAASVGGNSS 573 (728)
Q Consensus 495 ~i~~li~~E~~~inT~hpdF~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (728)
++.++++||.+||||+||||.+..+ ++....+..... . ...+ +.. . ...+ .
T Consensus 476 ~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~--------~--------~~~~-~~~-------~--~~~~--~ 527 (657)
T KOG0446|consen 476 AVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAA--------M--------KLIS-AQL-------L--KEEL--G 527 (657)
T ss_pred HHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccc--------c--------cccc-ccc-------c--cccc--c
Confidence 9999999999999999999998765 443222110000 0 0000 000 0 0000 0
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045702 574 SRTWGFPIIFGGKVQAGESPASRSPHETLHNVEQLPSTIQLTEPPSILGPLEM-TEQEAVEILVTKLLLQSYYDVVRKNV 652 (728)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-s~~e~~e~~~I~~li~sYf~Ivrk~i 652 (728)
.....+..+++. ...+.+..++..+..... +.++..+++.|+.++.+||+||+|+|
T Consensus 528 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i 584 (657)
T KOG0446|consen 528 ECNSALKAIKNA-----------------------VGSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKL 584 (657)
T ss_pred cccchhhhhcch-----------------------hhhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011110 000112222222222222 67888899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045702 653 QDLVPKSIMHFLVNHAKRNLHNTFIQKLYR-ENHVEELLQEHDEVAANRRQVKEVSLVLQQAVQTLDEVES 722 (728)
Q Consensus 653 ~D~VPKaIm~fLVn~~~~~Lq~~Lv~~Ly~-~~~~~~LL~E~~~i~~kR~~l~~~l~~L~~A~~~L~~v~~ 722 (728)
+|+|||+|||+|||.+++.||++|++.||+ .+.+++||+|+|.++++|+.|++|+++|++|+.+|..+..
T Consensus 585 ~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~i~~~R~~~~~~l~~L~~a~~ii~~~~~ 655 (657)
T KOG0446|consen 585 VDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPRIKRRRELQQKRLLALQKALSILATVAQ 655 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 9999999999999999999999999999999999998764
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.8e-54 Score=459.92 Aligned_cols=286 Identities=44% Similarity=0.794 Sum_probs=252.7
Q ss_pred HHhHcCCCcccCCceeEeecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhH
Q 045702 238 CNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGL 317 (728)
Q Consensus 238 ~~~l~~~~~~l~~g~~~v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l 317 (728)
.++|.|+.+||++||++|+||||+|++.+.++.++++.|..||++||+|+..+.++|+++|+.+|+++|.+||+++||.|
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 47899999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccccccchhHHHHHHHHHHHhhh
Q 045702 318 KSELHSRLNAVAKELQKYGDVME-SKAEKETMLLNILTKYCEAFSAMVDGRSQ-EISTKELSGGARIRYIFQSIFVKTLE 395 (728)
Q Consensus 318 ~~~i~~~l~~~~~eL~~lg~~~~-~~~~~~~~l~~~~~~f~~~~~~~l~G~~~-~~~~~~~~g~~ri~~~f~~~f~~~~~ 395 (728)
+.+|+++|.+++.+|+.||++++ +..+++.+|++++++|++.++++++|.|. .....++.||+||+++|+++|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999 77799999999999999999999999998 46667899999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcccccccchhHHH
Q 045702 396 EVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRR 475 (728)
Q Consensus 396 ~~~~~~~~~~~~i~~~i~~~~G~~~~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~~~~~~~~~rfp~L~~ 475 (728)
.+++++.+++++|+++|++++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++..|...+|.+||.|++
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~ 241 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKE 241 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccCCCccccchhHHHHH
Q 045702 476 HLDDVMGKFIRDSVRPAERMIDSLIEIEMDYINSSNPNFVGGKKAVEV 523 (728)
Q Consensus 476 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~inT~hpdF~~~~~~~~~ 523 (728)
++.+++.++++++.++|+++|+++|+||++||||+||+|.++..++..
T Consensus 242 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~ 289 (295)
T PF01031_consen 242 AIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQ 289 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766533
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.9e-46 Score=381.17 Aligned_cols=239 Identities=61% Similarity=0.985 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCc
Q 045702 19 GSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDG 98 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~ 98 (728)
|++|++++|+|++++..+ |++..+++|+|+|||++|+||||+||+|+|..|+|++.|.|||||+++++++..
T Consensus 1 ~~~~~~l~~~i~~l~~~~-G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~------- 72 (240)
T smart00053 1 MEKLIPLVNKLQDAFSAL-GQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSS------- 72 (240)
T ss_pred CccHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCC-------
Confidence 689999999999998889 999899999999999999999999999999998999999999999999998754
Q ss_pred cchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHH
Q 045702 99 REWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIR 178 (728)
Q Consensus 99 ~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~ 178 (728)
.+|.++++.+++.+.+++++++.|+++++++.+.+.+||.++|+|+|++|++++++||||||+...+.++++.++...++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~ 152 (240)
T smart00053 73 TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIK 152 (240)
T ss_pred CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHH
Confidence 36888888888888999999999999999999999999999999999999999999999999987776777788888999
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecC
Q 045702 179 KMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 179 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
+++..|++++++|||+|++|+.|+.+++++++++.+++.+.|||+|+||+|..++++++.++++|+.++|++|||+|+||
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr 232 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNR 232 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECC
Confidence 99999999998899999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred Chhhhhc
Q 045702 259 SQEDINK 265 (728)
Q Consensus 259 s~~~~~~ 265 (728)
+++|++.
T Consensus 233 ~~~d~~~ 239 (240)
T smart00053 233 SQKDIEG 239 (240)
T ss_pred ChHHhhc
Confidence 9999864
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=3.8e-31 Score=280.52 Aligned_cols=291 Identities=28% Similarity=0.465 Sum_probs=231.9
Q ss_pred hhhhhHHHHHHHHHHhhcccC-CCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCC
Q 045702 17 TIGSSVIPIINRLQDIFSPVD-GELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNP 94 (728)
Q Consensus 17 ~~~~~l~~~~~~l~d~~~~~~-g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~ 94 (728)
-+-..||+.+...-|+++..+ |.+..-.||+|||||+|||||+|+||.+....++|||+| ..||.|..+.|..++..
T Consensus 279 klKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH- 357 (980)
T KOG0447|consen 279 KLKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH- 357 (980)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch-
Confidence 445678888888888887663 334456799999999999999999999999999999999 78999999988766532
Q ss_pred CCCccchhhhccC----CCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCc
Q 045702 95 GDDGREWAEFRHL----PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQP 170 (728)
Q Consensus 95 ~~~~~~~~~~~~~----~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~ 170 (728)
.+.|-.. +-.+..|+.+++.+++-.+......+..+|+.+|.+.+.||+++.+.|||+||+++.-..+-.
T Consensus 358 ------VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA 431 (980)
T KOG0447|consen 358 ------VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMA 431 (980)
T ss_pred ------hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhccccc
Confidence 1111110 112346788899988887777667788999999999999999999999999999877555555
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCc----cHHHhHcCCCc
Q 045702 171 TDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGT----NACNFLLGKVV 246 (728)
Q Consensus 171 ~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~ 246 (728)
.+..+.+..|...|++++++||||+.+.+.|...+..-.+...+||.|.|||+|+||.|+....- ...+++.|+..
T Consensus 432 ~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 432 PDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred ccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCcc
Confidence 66677888999999999999999999999999988888999999999999999999999987531 23489999999
Q ss_pred ccC-CceeEeecCChhhhhccccHHHHHHHHHHhhccCCCCCc--c-ccccChHHHHHHHHHHHHHHHHhhhhhH
Q 045702 247 PLR-LGYVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNG--L-SDRCGIPQLAKKLNQILEQHIRMVLPGL 317 (728)
Q Consensus 247 ~l~-~g~~~v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~--~-~~~~G~~~L~~~L~~~L~~~i~~~lP~l 317 (728)
|.+ +|||+|+.-... ...|+.+.++.|++||.+...++. + +..+.+.+|.=..+.-++..++.++..-
T Consensus 512 PMKALGYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQ 583 (980)
T KOG0447|consen 512 PMKALGYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQ 583 (980)
T ss_pred chhhcceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 986 999998863221 234678888899999998654432 2 3456777777778888887777665433
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.94 E-value=3.6e-26 Score=198.34 Aligned_cols=91 Identities=38% Similarity=0.615 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhhhcCCHHHHHHHHHHHHHHHH
Q 045702 630 EAVEILVTKLLLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKEVSLV 709 (728)
Q Consensus 630 e~~e~~~I~~li~sYf~Ivrk~i~D~VPKaIm~fLVn~~~~~Lq~~Lv~~Ly~~~~~~~LL~E~~~i~~kR~~l~~~l~~ 709 (728)
|..++++|+.++.|||+||+|+++|+|||+|||||||++++.||++|++.||+++.+++||+|||+|++||+.|++++++
T Consensus 2 e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 2 EDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 045702 710 LQQAVQTLDEV 720 (728)
Q Consensus 710 L~~A~~~L~~v 720 (728)
|++|.++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 6
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.89 E-value=4.4e-23 Score=179.69 Aligned_cols=92 Identities=43% Similarity=0.676 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhhhcCCHHHHHHHHHHHHHHH
Q 045702 629 QEAVEILVTKLLLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKEVSL 708 (728)
Q Consensus 629 ~e~~e~~~I~~li~sYf~Ivrk~i~D~VPKaIm~fLVn~~~~~Lq~~Lv~~Ly~~~~~~~LL~E~~~i~~kR~~l~~~l~ 708 (728)
+|..+++.|++++.|||+||+|||+|+|||+|+||||+++.+.|+.+|++.||..+.+++||+|||+|+++|++|+++++
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAEKREELKKKLE 80 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 045702 709 VLQQAVQTLDEV 720 (728)
Q Consensus 709 ~L~~A~~~L~~v 720 (728)
+|++|+++|++|
T Consensus 81 ~L~~A~~~L~~~ 92 (92)
T PF02212_consen 81 RLKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 999999999875
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=6.5e-22 Score=192.66 Aligned_cols=168 Identities=34% Similarity=0.464 Sum_probs=133.6
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHHhh
Q 045702 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETN 127 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~ 127 (728)
|+|+|.+|||||||||||+|.+++|++.++||++|+.+++........ ..+............++.++...+.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEH---EEAIIEFKDGSEEFEELNELREQIDEEFD 77 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCT---SEEEECEEEETEEBCCHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCcccc---ccccccccccccchhhHHHHHHhhhcccc
Confidence 799999999999999999999999999999999999999987665321 01111111113445788899988888777
Q ss_pred hhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH
Q 045702 128 KEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA 207 (728)
Q Consensus 128 ~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~ 207 (728)
...+....++...+.+....+...+++||||||+..... ...+++.+|+..+| ++++|.+++.++...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~---------~~~~~~~~~~~~~d-~vi~V~~~~~~~~~~~~ 147 (168)
T PF00350_consen 78 SIEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS---------EHTEITEEYLPKAD-VVIFVVDANQDLTESDM 147 (168)
T ss_dssp HHHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT---------TTSHHHHHHHSTTE-EEEEEEETTSTGGGHHH
T ss_pred cccccccccccceeEEeeccccccceEEEeCCccccchh---------hhHHHHHHhhccCC-EEEEEeccCcccchHHH
Confidence 777667788888999999999999999999999975422 22278999997777 88888899999999998
Q ss_pred HHHHHHhCCCCCceEEeeccC
Q 045702 208 LQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 208 l~l~~~~d~~~~rti~VltK~ 228 (728)
..+.+..++...++|+|+||+
T Consensus 148 ~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 148 EFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHTTTCSSEEEEEE-G
T ss_pred HHHHHHhcCCCCeEEEEEcCC
Confidence 899999999999999999995
No 8
>PRK09866 hypothetical protein; Provisional
Probab=99.77 E-value=6.5e-15 Score=164.24 Aligned_cols=228 Identities=18% Similarity=0.156 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCc-
Q 045702 20 SSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDG- 98 (728)
Q Consensus 20 ~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~- 98 (728)
..+.+-+..|+..+..+ -. .-|.++|+|..|+|||||+|+|+|..++|++...+|.+|+.+++........-..
T Consensus 49 R~i~~ri~~L~~~L~Kv-~~----~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~d 123 (741)
T PRK09866 49 PNIAERHAMLNNELRKI-SR----LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFS 123 (741)
T ss_pred HHHHHHHHHHHHHHHHH-hc----cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecC
Confidence 34555555565555544 21 1299999999999999999999999999999999999999877654332210000
Q ss_pred -cchhh-hc-cCC-------CC-------cccChHHHHHHHHHHh----------------------hhhc---CCCCCc
Q 045702 99 -REWAE-FR-HLP-------GK-------RFFDFTKVRQEIMAET----------------------NKEA---GSNRGV 136 (728)
Q Consensus 99 -~~~~~-~~-~~~-------g~-------~~~d~~~i~~~i~~~~----------------------~~~~---g~~~~~ 136 (728)
..+-. .+ ..| .. ...|...+...|++.. .+++ +....|
T Consensus 124 tvgfI~~ll~~Lp~~Lv~~f~atl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~ 203 (741)
T PRK09866 124 HVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPF 203 (741)
T ss_pred CccchHHHHHHhhHHHHHhhhhHHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcH
Confidence 00000 00 000 00 0011222222211110 0000 111111
Q ss_pred c-------cceEEEEEecCCC-----cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 137 S-------EKQIGLKISSPNV-----LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 137 s-------~~~i~l~i~~p~~-----~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
. -.+|.++.....+ .+++||||||+.+... ..+.++..+.+..+| +||+|++++.....
T Consensus 204 d~ya~~~~~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~ 274 (741)
T PRK09866 204 SAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSI 274 (741)
T ss_pred HHHhhhhcCceeeeeeeeccccccccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCCh
Confidence 0 1234455544443 4899999999985421 123344445799999 77777777765555
Q ss_pred HHHHHHHHHhCCCCC--ceEEeeccCCCCCCCccHH----HhHc----CCCcccCCceeEeecCChhhh
Q 045702 205 SDALQMAREADPTGS--RTIGVITKLDIMDRGTNAC----NFLL----GKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 205 ~~~l~l~~~~d~~~~--rti~VltK~D~~~~~~~~~----~~l~----~~~~~l~~g~~~v~~rs~~~~ 263 (728)
.+ ..+++.+...++ |+|+|+||+|+.+...+.. .++. ....+ .-..|+|+.+....+
T Consensus 275 ~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~-f~eIfPVSAlkG~ni 341 (741)
T PRK09866 275 SD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCIT-PQQIFPVSSMWGYLA 341 (741)
T ss_pred hH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCC-CceEEEEeCCCCCCH
Confidence 55 566666665553 9999999999986443222 3322 11111 234678887766443
No 9
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1e-14 Score=141.63 Aligned_cols=129 Identities=28% Similarity=0.447 Sum_probs=94.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcc-cChHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRF-FDFTKVRQE 121 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~-~d~~~i~~~ 121 (728)
-++|.||++|+.|+|||||||+|+|..-|.|-+. . ||++. .+|.++.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk----t--------------------------PGrTq~iNff~~~-- 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSK----T--------------------------PGRTQLINFFEVD-- 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCC----C--------------------------CCccceeEEEEec--
Confidence 3789999999999999999999999774444221 1 23221 1111111
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeE--EEEEecCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCI--ILAVSPAN 199 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~i--IL~V~~a~ 199 (728)
..+.|||+||+.-... +....+.+..++..|++....+ ++.++++.
T Consensus 70 -----------------------------~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r 117 (200)
T COG0218 70 -----------------------------DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDAR 117 (200)
T ss_pred -----------------------------CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECC
Confidence 0278999999865432 3466789999999999986534 44556888
Q ss_pred CCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 200 SDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 200 ~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
..+...| .++...+...+.++++|+||+|.+..+..
T Consensus 118 ~~~~~~D-~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 118 HPPKDLD-REMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred CCCcHHH-HHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 8777777 78888888889999999999999987644
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.63 E-value=8.2e-15 Score=149.85 Aligned_cols=124 Identities=25% Similarity=0.332 Sum_probs=92.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
-|++||.+|+|||||+|+|+|.++..++.-+ +||..+...+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t------------------------------------- 50 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT------------------------------------- 50 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-------------------------------------
Confidence 5899999999999999999999984443332 33333222111
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
-+..++.||||||+.... +.+.+.+.+.+.+.+...| +||+|++++..+...
T Consensus 51 ----------------------~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~ 102 (298)
T COG1159 51 ----------------------TDNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVD-LILFVVDADEGWGPG 102 (298)
T ss_pred ----------------------cCCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCc-EEEEEEeccccCCcc
Confidence 111268999999998652 4577888889999999999 888888888877776
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
| ..++..+.....|.|+++||+|...+...
T Consensus 103 d-~~il~~lk~~~~pvil~iNKID~~~~~~~ 132 (298)
T COG1159 103 D-EFILEQLKKTKTPVILVVNKIDKVKPKTV 132 (298)
T ss_pred H-HHHHHHHhhcCCCeEEEEEccccCCcHHH
Confidence 6 55666665556899999999999987763
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=148.60 Aligned_cols=174 Identities=21% Similarity=0.274 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCC-CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCC
Q 045702 19 GSSVIPIINRLQDIFSPVDGELSKI-SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDD 97 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~~~~-~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~ 97 (728)
..++-.+.+.|.+++... ..+..+ +--.||++|.||+|||||||||+|.+. .++|..|...
T Consensus 191 ~~~l~~~~~~l~~ll~~~-~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~GTT------------ 252 (454)
T COG0486 191 REKLEELIAELDELLATA-KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAGTT------------ 252 (454)
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCCCc------------
Confidence 344445555555544443 222222 345799999999999999999999986 6777777322
Q ss_pred ccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHH
Q 045702 98 GREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARI 177 (728)
Q Consensus 98 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~ 177 (728)
.|+|+..+.-.+. .+.|+||.|+.... ..++..-
T Consensus 253 ----------------------------------------RDviee~i~i~G~-pv~l~DTAGiRet~-----d~VE~iG 286 (454)
T COG0486 253 ----------------------------------------RDVIEEDINLNGI-PVRLVDTAGIRETD-----DVVERIG 286 (454)
T ss_pred ----------------------------------------cceEEEEEEECCE-EEEEEecCCcccCc-----cHHHHHH
Confidence 1222222222222 48999999998542 2233333
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeec
Q 045702 178 RKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVN 257 (728)
Q Consensus 178 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 257 (728)
-+..+..++++| +||+|.+++..+...+ ..+.. .-+.++++++|+||.|+..+...... ....+..++.++.
T Consensus 287 IeRs~~~i~~AD-lvL~v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa 358 (454)
T COG0486 287 IERAKKAIEEAD-LVLFVLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISA 358 (454)
T ss_pred HHHHHHHHHhCC-EEEEEEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEe
Confidence 466788899999 8888888888766666 45554 55668999999999999976542111 1222334667777
Q ss_pred CChhhhh
Q 045702 258 RSQEDIN 264 (728)
Q Consensus 258 rs~~~~~ 264 (728)
+...+++
T Consensus 359 ~t~~Gl~ 365 (454)
T COG0486 359 KTGEGLD 365 (454)
T ss_pred cCccCHH
Confidence 6665443
No 12
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.53 E-value=5.9e-12 Score=145.66 Aligned_cols=534 Identities=27% Similarity=0.341 Sum_probs=370.7
Q ss_pred hhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHH
Q 045702 101 WAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKM 180 (728)
Q Consensus 101 ~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~ 180 (728)
|..+.+.+.....++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...++.++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (546)
T COG0699 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELL 82 (546)
T ss_pred cchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHH
Confidence 44555555666778888998888888888888899999999999999999999999999999999888888887666688
Q ss_pred HHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCCh
Q 045702 181 IMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260 (728)
Q Consensus 181 ~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~ 260 (728)
-..++...+++|.....++.+..+.+....++..++ +.++.+.++.+...... ++.|+..+.+..+
T Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 148 (546)
T COG0699 83 DLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALE 148 (546)
T ss_pred HhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchh
Confidence 888999999999999999888888887788877775 77888777766543211 6778888888888
Q ss_pred hhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCC
Q 045702 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKYGDVME 340 (728)
Q Consensus 261 ~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~lg~~~~ 340 (728)
.++....+.......+..+|..++.|.+....++..++...++..+..|+....+............ .++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 220 (546)
T COG0699 149 TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN-- 220 (546)
T ss_pred HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch--
Confidence 8888888887788899999999999999888999999999999999999988887665554444332 22221
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHhcCCCC
Q 045702 341 SKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRN 420 (728)
Q Consensus 341 ~~~~~~~~l~~~~~~f~~~~~~~l~G~~~~~~~~~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i~~~~G~~~ 420 (728)
.+......|...+... .+|.|++.. ...+.++..+....+....-++.|.++
T Consensus 221 -------~~~~~~~~~~~~~~~~-------------~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 272 (546)
T COG0699 221 -------EVLAVIQTLLKRLSEL-------------VRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGERP 272 (546)
T ss_pred -------HHHHHHHHHHHHHHHH-------------hccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCCc
Confidence 2334444444444422 233443333 122333344455566666777778777
Q ss_pred CCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh-hhcccccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045702 421 ALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSH-ACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSL 499 (728)
Q Consensus 421 ~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~-~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~l 499 (728)
..|.....+..++..++..+..++.+|+..+.+++.++.. .........|+.+...+...+..............+...
T Consensus 273 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (546)
T COG0699 273 SLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAI 352 (546)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7888999999999999999999998888888888888743 333455688999999999999998899999999999999
Q ss_pred HHHHhCcccCCCccccchhHHHHHHHHHhhhcc--CCCCCCCCCcccccccccCCCCCCCC--cccccccccCCCCCCCC
Q 045702 500 IEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQ--DGTDGEKGTLSEIGQRFGLTSQGRHS--QSNNQRAASVGGNSSSR 575 (728)
Q Consensus 500 i~~E~~~inT~hpdF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 575 (728)
++.+..|++|.||+|.....+............ ....+..... + ....+... ...... +. ..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~----~~---~~ 418 (546)
T COG0699 353 IDIEERYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLR-E------LSDMGLNSLLSNNLEE----HL---LG 418 (546)
T ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccc-c------hhhcccchhHHHHHHH----Hh---hc
Confidence 999999999999999976655544333211000 0000000000 0 00000000 000000 00 00
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045702 576 TWGFPIIFGGKVQAGESPASRSPHETLHNVEQLPSTIQLTEPPSILGPLEM-TEQEAVEILVTKLLLQSYYDVVRKNVQD 654 (728)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-s~~e~~e~~~I~~li~sYf~Ivrk~i~D 654 (728)
.++....|++.... . ........ ............ ..+...+.+.|..++.+| .++...+.|
T Consensus 419 ~~~~~~~~~~~~~~-----~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~ 481 (546)
T COG0699 419 SDFSLYKFLNEFLE-----L----KKLDALLA-------TLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRD 481 (546)
T ss_pred chhhHHHHHHHHhh-----h----ccchhhhc-------cchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHH
Confidence 00000001000000 0 00000000 000000000000 223444455679999999 999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 045702 655 LVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKEVSLVLQQAVQ 715 (728)
Q Consensus 655 ~VPKaIm~fLVn~~~~~Lq~~Lv~~Ly~~~~~~~LL~E~~~i~~kR~~l~~~l~~L~~A~~ 715 (728)
.|+++++.++.+..+...+......+|.....+.+..+.+.+.+.|..+.+.+..+.++..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 482 SVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888888888888888999999999999999999999999988875
No 13
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=1.5e-13 Score=144.61 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=88.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.|+|+|.+|||||||+|+|+|..+..++.- .+||.+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i--------------------------------------- 42 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGI--------------------------------------- 42 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEE---------------------------------------
Confidence 589999999999999999999886333221 2344332110
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
... +...+.||||||+.... ..+...+.+.+..++..+|. +++|++++.....
T Consensus 43 ------------------~~~--~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDv-vl~VvD~~~~~~~- 95 (270)
T TIGR00436 43 ------------------HTT--GASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDL-ILFVVDSDQWNGD- 95 (270)
T ss_pred ------------------EEc--CCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCE-EEEEEECCCCCch-
Confidence 000 01147999999997541 23344555667889999995 5555555543322
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCccHH--HhHcCCCcccCCceeEeecCChhhhh
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGTNAC--NFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~--~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
+ ..++..+...+.|+++|+||+|+..+..... ..+... ... ..++.+++....+++
T Consensus 96 ~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~-~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 96 G-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAIL-EDF-KDIVPISALTGDNTS 153 (270)
T ss_pred H-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhh-cCC-CceEEEecCCCCCHH
Confidence 2 3344445455789999999999975332111 111111 111 156778877665543
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.50 E-value=8e-14 Score=150.24 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHhhcccCCCC---CC-CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCC
Q 045702 20 SSVIPIINRLQDIFSPVDGEL---SK-ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNP 94 (728)
Q Consensus 20 ~~l~~~~~~l~d~~~~~~g~~---~~-~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~ 94 (728)
..+-++++.+...+. . ... .. .+.-+|++||.+|+|||||+|+|+|.+..-++.- .+||-++..
T Consensus 151 ~Gi~dLld~v~~~l~-~-~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~--------- 219 (444)
T COG1160 151 RGIGDLLDAVLELLP-P-DEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDI--------- 219 (444)
T ss_pred cCHHHHHHHHHhhcC-C-cccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceee---------
Confidence 356667777666653 2 211 11 2467999999999999999999999886444332 233433332
Q ss_pred CCCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHH
Q 045702 95 GDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIE 174 (728)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~ 174 (728)
++...+ ..++||||.|+.+..+-.. .++
T Consensus 220 -------------------------------------------------~~e~~~-~~~~liDTAGiRrk~ki~e--~~E 247 (444)
T COG1160 220 -------------------------------------------------EFERDG-RKYVLIDTAGIRRKGKITE--SVE 247 (444)
T ss_pred -------------------------------------------------eEEECC-eEEEEEECCCCCccccccc--ceE
Confidence 222111 1479999999986543222 122
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCC--cccCCce
Q 045702 175 ARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKV--VPLRLGY 252 (728)
Q Consensus 175 ~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~--~~l~~g~ 252 (728)
..--.-+...|..++ ++++|.+|..++..+| .+++..+...|...++|+||||+++..+...+..+.+. .--.++|
T Consensus 248 ~~Sv~rt~~aI~~a~-vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 248 KYSVARTLKAIERAD-VVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred EEeehhhHhHHhhcC-EEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 222233566788899 8888889999999999 89999999999999999999999987433332222111 1123566
Q ss_pred eEeecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 045702 253 VGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKEL 332 (728)
Q Consensus 253 ~~v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL 332 (728)
..+.+-|.........+.++... .|.....++.+..|.+.| ...+..+.|.+....+-++
T Consensus 326 a~i~~iSA~~~~~i~~l~~~i~~---------~~~~~~~ri~Ts~LN~~l----~~a~~~~pP~~~~G~r~ki------- 385 (444)
T COG1160 326 APIVFISALTGQGLDKLFEAIKE---------IYECATRRISTSLLNRVL----EDAVAKHPPPVRYGRRLKI------- 385 (444)
T ss_pred CeEEEEEecCCCChHHHHHHHHH---------HHHHhccccCHHHHHHHH----HHHHHhCCCCccCCceEEE-------
Confidence 66665554322211122222221 122234467777655554 4555555555442322222
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045702 333 QKYGDVMESKAEKETMLLNILTKYCEAFSAMVDGRS 368 (728)
Q Consensus 333 ~~lg~~~~~~~~~~~~l~~~~~~f~~~~~~~l~G~~ 368 (728)
.|+.+..+.+.....+.+....+..+|..++..++
T Consensus 386 -~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~ 420 (444)
T COG1160 386 -KYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRL 420 (444)
T ss_pred -EEEecCCCCCCEEEEEecchhhCchHHHHHHHHHH
Confidence 34443333332222334444455555555555443
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.49 E-value=2.6e-14 Score=136.02 Aligned_cols=143 Identities=25% Similarity=0.348 Sum_probs=85.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
+|+++|.+|+|||||+|+|+|... .+++-+ +|.-+....+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~-------------------------------------- 42 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIF-------------------------------------- 42 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEE--------------------------------------
Confidence 699999999999999999999984 333321 2222221111
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh--hcCCeEEEEEecCCCCcc
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI--RQENCIILAVSPANSDLA 203 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi--~~~~~iIL~V~~a~~d~~ 203 (728)
++.+ ..+.||||||+.+.... . .-+.++.+|+ .++| +|++|++|+. +
T Consensus 43 ------------------~~~~---~~~~lvDlPG~ysl~~~----s---~ee~v~~~~l~~~~~D-~ii~VvDa~~-l- 91 (156)
T PF02421_consen 43 ------------------KLGD---QQVELVDLPGIYSLSSK----S---EEERVARDYLLSEKPD-LIIVVVDATN-L- 91 (156)
T ss_dssp ------------------EETT---EEEEEEE----SSSSSS----S---HHHHHHHHHHHHTSSS-EEEEEEEGGG-H-
T ss_pred ------------------EecC---ceEEEEECCCcccCCCC----C---cHHHHHHHHHhhcCCC-EEEEECCCCC-H-
Confidence 1100 25799999999765322 1 1235667777 4677 6666666654 2
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCCccH--HHhHcCCCcccCCceeEeecCChhhh
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRGTNA--CNFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
...+.++.++...|.|+++|+||+|...+.... .+.+.. .++.+.++++.+..+++
T Consensus 92 -~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~---~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 92 -ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE---RLGVPVIPVSARTGEGI 149 (156)
T ss_dssp -HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH---HHTS-EEEEBTTTTBTH
T ss_pred -HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH---HhCCCEEEEEeCCCcCH
Confidence 233778888888899999999999998644321 111211 24456677777665544
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.49 E-value=2.1e-13 Score=147.03 Aligned_cols=124 Identities=23% Similarity=0.354 Sum_probs=93.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
|.|++||.+|+|||||+|+|+|.+. .++...|.+.+-+ -|+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTRDr-----------~y~----------------------- 44 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTRDR-----------IYG----------------------- 44 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCccCC-----------ccc-----------------------
Confidence 8999999999999999999999886 3333333322100 010
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
..++.+. .+++|||+|+.... +..+...++..+...+.++| +||+|+++..+++..
T Consensus 45 ----------------~~~~~~~---~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git~~ 100 (444)
T COG1160 45 ----------------DAEWLGR---EFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGITPA 100 (444)
T ss_pred ----------------eeEEcCc---eEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHH
Confidence 0111111 37999999998542 24688899999999999999 777777888888888
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
| ..+++.+.+.++|+|+|+||+|....
T Consensus 101 D-~~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 101 D-EEIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred H-HHHHHHHHhcCCCEEEEEEcccCchh
Confidence 8 88898888878999999999999843
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=99.47 E-value=4.9e-13 Score=142.34 Aligned_cols=121 Identities=24% Similarity=0.345 Sum_probs=79.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcc-cccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDIC-TRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~-Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.|+|+|.+|||||||+|+|+|.++..++..+. ||.....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~---------------------------------------- 46 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRG---------------------------------------- 46 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEE----------------------------------------
Confidence 59999999999999999999988633332221 2211110
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
+......+++||||||+.... ..+.+.+...+..++..+|+++ +|++++..+...
T Consensus 47 -------------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il-~vvd~~~~~~~~ 101 (292)
T PRK00089 47 -------------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVL-FVVDADEKIGPG 101 (292)
T ss_pred -------------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEE-EEEeCCCCCChh
Confidence 000011258999999997542 2344455667788899999555 455555544443
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
+ ..+++.+...+.|+++|+||+|+...
T Consensus 102 ~-~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 102 D-EFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred H-HHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 3 55566665557899999999999843
No 18
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=134.35 Aligned_cols=143 Identities=20% Similarity=0.288 Sum_probs=90.0
Q ss_pred HHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhcc
Q 045702 27 NRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRH 106 (728)
Q Consensus 27 ~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~ 106 (728)
++.++.++.|+. -+.++|+|+|+|.+|+|||||+++|++.+.--...
T Consensus 152 ~~~r~~l~~LP~--Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y------------------------------- 198 (346)
T COG1084 152 RKARDHLKKLPA--IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY------------------------------- 198 (346)
T ss_pred HHHHHHHhcCCC--CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC-------------------------------
Confidence 333444444433 35789999999999999999999999987300011
Q ss_pred CCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh
Q 045702 107 LPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR 186 (728)
Q Consensus 107 ~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~ 186 (728)
.|+.+-|.|-...-+...+.+|||||+-+-+ .+-...++..+--.|+
T Consensus 199 ----------------------------PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP-----l~ErN~IE~qAi~AL~ 245 (346)
T COG1084 199 ----------------------------PFTTKGIHVGHFERGYLRIQVIDTPGLLDRP-----LEERNEIERQAILALR 245 (346)
T ss_pred ----------------------------CccccceeEeeeecCCceEEEecCCcccCCC-----hHHhcHHHHHHHHHHH
Confidence 1122222222222223358999999998543 3333355555555666
Q ss_pred cCCeEEEEEecCCC--CcccHHHHHHHHHhCCC-CCceEEeeccCCCCCCCc
Q 045702 187 QENCIILAVSPANS--DLATSDALQMAREADPT-GSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 187 ~~~~iIL~V~~a~~--d~~~~~~l~l~~~~d~~-~~rti~VltK~D~~~~~~ 235 (728)
.-+.+||++++.+. ++.-.+-..|..++.+. ..+++.|+||+|..+.+.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEK 297 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhH
Confidence 66667887777653 33333445677777653 368999999999986543
No 19
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.41 E-value=2.3e-12 Score=117.46 Aligned_cols=115 Identities=28% Similarity=0.364 Sum_probs=73.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
+|+|+|.+|+|||||+|+|+|......+.. .+|+.+..-...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~------------------------------------- 43 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE------------------------------------- 43 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-------------------------------------
Confidence 699999999999999999999765444443 566665321100
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
+ ....+.|+||||+..... .+........+.+.+...|.+|+++ +++.. .+.
T Consensus 44 -------------------~---~~~~~~~vDtpG~~~~~~----~~~~~~~~~~~~~~~~~~d~ii~vv-~~~~~-~~~ 95 (116)
T PF01926_consen 44 -------------------Y---NNKKFILVDTPGINDGES----QDNDGKEIRKFLEQISKSDLIIYVV-DASNP-ITE 95 (116)
T ss_dssp -------------------E---TTEEEEEEESSSCSSSSH----HHHHHHHHHHHHHHHCTESEEEEEE-ETTSH-SHH
T ss_pred -------------------e---ceeeEEEEeCCCCcccch----hhHHHHHHHHHHHHHHHCCEEEEEE-ECCCC-CCH
Confidence 0 011468999999985421 1111112334555568888555544 46553 333
Q ss_pred HHHHHHHHhCCCCCceEEeecc
Q 045702 206 DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK 227 (728)
....+++++. .+.++++|+||
T Consensus 96 ~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 96 DDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHh-cCCCEEEEEcC
Confidence 4467777776 78999999998
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.40 E-value=5e-12 Score=137.25 Aligned_cols=126 Identities=24% Similarity=0.363 Sum_probs=82.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-..|+|++||.+|+|||||+|+|+|..+...+...+|+-|+.-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 46799999999999999999999998754333334555443321
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+..|+...+.|+||||+.+. -|.++.+.++. +..++.++| +|++|++++...
T Consensus 231 ----------------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~AD-lil~VvD~s~~~ 282 (351)
T TIGR03156 231 ----------------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREAD-LLLHVVDASDPD 282 (351)
T ss_pred ----------------------EEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCC-EEEEEEECCCCc
Confidence 11111225899999999532 13344445554 446788999 555555554433
Q ss_pred ccHH---HHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSD---ALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~---~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
...+ +..+++.+...+.|+|+|+||+|+.+
T Consensus 283 ~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 283 REEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 2222 23566666655789999999999975
No 21
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=128.66 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=122.1
Q ss_pred CCe-EEEECCCCCCHHHHHHHHhCCCCCccc-CCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 45 LPQ-VAVVGSQSSGKSSVLEALVGRDFLPRG-CDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 45 lP~-IvVvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-|- |.++|..++||||++|||.+...-|+. .+.||+-++... ...
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~---------------~~~------------------ 84 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR---------------LSY------------------ 84 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH---------------hhc------------------
Confidence 344 459999999999999999976655665 456666654321 100
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+..+|+|+||||+.+.... ...++..+..|+.+.| ++|++.++....
T Consensus 85 --------------------------~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~dra 131 (296)
T COG3596 85 --------------------------DGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRA 131 (296)
T ss_pred --------------------------cccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCcc
Confidence 0025899999999865332 3468889999999999 888888876433
Q ss_pred ccHHHHHHHHHhCC--CCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChhhhhccccHHHHHHHHHHhh
Q 045702 203 ATSDALQMAREADP--TGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEKNFF 280 (728)
Q Consensus 203 ~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~~~~~~~~~~~~E~~fF 280 (728)
-.-| ..+++.+-- .++|+|+|+|.+|...++.++. .. .+.....+... +++....=.+||
T Consensus 132 L~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~-~~--------------~~~p~~a~~qf--i~~k~~~~~~~~ 193 (296)
T COG3596 132 LGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWD-SA--------------GHQPSPAIKQF--IEEKAEALGRLF 193 (296)
T ss_pred ccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccc-cc--------------cCCCCHHHHHH--HHHHHHHHHHHH
Confidence 2223 455555432 2389999999999998874432 11 11111111111 122222223444
Q ss_pred cc-CCCCCcccc-ccChHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 045702 281 HD-HPVYNGLSD-RCGIPQLAKKLNQILEQHIRMV-LPGLKSELHSRLNAVAKELQK 334 (728)
Q Consensus 281 ~~-~~~~~~~~~-~~G~~~L~~~L~~~L~~~i~~~-lP~l~~~i~~~l~~~~~eL~~ 334 (728)
.. ||.|..-.. -+|++.|...|-+.+-.+-+.- .+.+....+......+.....
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d~~~~~~~~~q~~~~~ 250 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQDELRTQSARTQARTQF 250 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 44 666655423 3999998888877766444332 223333444444444444333
No 22
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=6.2e-12 Score=125.83 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=76.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC--CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC--DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~--~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+|++||.+|+|||||+|+|+|...+.++. ..+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 69999999999999999999987654442 12343321110
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
.++ ....++||||||+..... ...++...+...+.......+ +||+|+++.. +..
T Consensus 44 ------------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~ 98 (196)
T cd01852 44 ------------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTE 98 (196)
T ss_pred ------------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCH
Confidence 001 011489999999986532 223333334344444445667 6666667765 554
Q ss_pred HHHHHHHHHhCC-----CCCceEEeeccCCCCCCC
Q 045702 205 SDALQMAREADP-----TGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 205 ~~~l~l~~~~d~-----~~~rti~VltK~D~~~~~ 234 (728)
.+ ...++.+.. ...++++|+|++|.+..+
T Consensus 99 ~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 99 EE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HH-HHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 44 444443322 126899999999998765
No 23
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.36 E-value=7.1e-12 Score=123.46 Aligned_cols=125 Identities=26% Similarity=0.317 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC--cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD--ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
-..|.|+|+|..|+|||||+|+|+|..+.+.-.. .+|+-+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 58 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN------------------------------------- 58 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE-------------------------------------
Confidence 5678999999999999999999999764322110 0111110
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCC--eEEEEEecC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQEN--CIILAVSPA 198 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~--~iIL~V~~a 198 (728)
...+ + .++.||||||+..... +......+..+...|++..+ ..+++|+++
T Consensus 59 ---------------------~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~ 110 (179)
T TIGR03598 59 ---------------------FFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDI 110 (179)
T ss_pred ---------------------EEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecC
Confidence 0011 0 1589999999864321 22333566677778887542 245666667
Q ss_pred CCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 199 NSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 199 ~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
+..+...+ ..+++.+...+.++++|+||+|++..
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 111 RHPLKELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred CCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 66666655 56667777678999999999999864
No 24
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=1.9e-11 Score=135.80 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------ 238 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------ 238 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE------------------------------------
Confidence 46799999999999999999999998763222223444443211
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+.+ ++...+.|+||||+.+. .|.++.+.+.. +..++..+|. +++|++++...
T Consensus 239 --------------------i~l--~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADl-IL~VvDaS~~~ 290 (426)
T PRK11058 239 --------------------IDV--ADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATL-LLHVVDAADVR 290 (426)
T ss_pred --------------------EEe--CCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCE-EEEEEeCCCcc
Confidence 111 11113689999998632 23444444544 4567889994 55555554432
Q ss_pred ccHH---HHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSD---ALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~---~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
.... +..++..+...+.|+|+|+||+|+.+
T Consensus 291 ~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 291 VQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 2222 23556666656789999999999974
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=2e-11 Score=137.43 Aligned_cols=126 Identities=24% Similarity=0.311 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
+.++|+|+|.+|+|||||+|+|+|.+..+++.. .+|+-....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~------------------------------------- 214 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDT------------------------------------- 214 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEE-------------------------------------
Confidence 467999999999999999999999764333322 122222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.. +...++||||||+.+..... ..++......+.+++..+| ++++|+++..+.
T Consensus 215 ---------------------~~~~-~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad-~~ilViD~~~~~ 269 (435)
T PRK00093 215 ---------------------PFER-DGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERAD-VVLLVIDATEGI 269 (435)
T ss_pred ---------------------EEEE-CCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCC-EEEEEEeCCCCC
Confidence 1110 11247999999986543211 1223223334557889999 556666677777
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..++ ..+++.+...+.+.++|+||+|+.+
T Consensus 270 ~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 270 TEQD-LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 7666 6777777777899999999999984
No 26
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.33 E-value=3.2e-10 Score=126.72 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=87.0
Q ss_pred hhhhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCC
Q 045702 17 TIGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPG 95 (728)
Q Consensus 17 ~~~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~ 95 (728)
.+...|-.+.+.|.+++... .....-+..+|+++|.+|+|||||+|+|+|.++..++.- .+||-+.+.
T Consensus 176 ~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~---------- 244 (442)
T TIGR00450 176 SLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEG---------- 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEE----------
Confidence 44445555566665555544 212223456899999999999999999999764212111 112211110
Q ss_pred CCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHH
Q 045702 96 DDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEA 175 (728)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~ 175 (728)
.+.+.+ ..+.+|||||+.... ..++.
T Consensus 245 ----------------------------------------------~i~~~g---~~v~l~DTaG~~~~~-----~~ie~ 270 (442)
T TIGR00450 245 ----------------------------------------------DFELNG---ILIKLLDTAGIREHA-----DFVER 270 (442)
T ss_pred ----------------------------------------------EEEECC---EEEEEeeCCCcccch-----hHHHH
Confidence 111111 147899999986431 11222
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.--.....|++.+|. +++|++++......+ . ++..+...+.|+|+|+||+|+...
T Consensus 271 ~gi~~~~~~~~~aD~-il~V~D~s~~~s~~~-~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 271 LGIEKSFKAIKQADL-VIYVLDASQPLTKDD-F-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHHHHHhhCCE-EEEEEECCCCCChhH-H-HHHHHhhCCCCEEEEEECccCCCc
Confidence 222456789999995 555555554443333 2 455555457899999999999754
No 27
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.33 E-value=1.5e-10 Score=130.12 Aligned_cols=168 Identities=19% Similarity=0.220 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHhhcccCCCCC-CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCC
Q 045702 20 SSVIPIINRLQDIFSPVDGELS-KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDD 97 (728)
Q Consensus 20 ~~l~~~~~~l~d~~~~~~g~~~-~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~ 97 (728)
..+-.+.++|.++...- .... .-+-++|+++|.+|+|||||+|+|+|.++..++.. .+|+-+.+.
T Consensus 190 ~~i~~l~~~l~~l~~~~-~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~------------ 256 (449)
T PRK05291 190 EKLEELIAELEALLASA-RQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEE------------ 256 (449)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEE------------
Confidence 34444555555443322 1111 12347899999999999999999999775222211 122211111
Q ss_pred ccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHH
Q 045702 98 GREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARI 177 (728)
Q Consensus 98 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~ 177 (728)
.+.+.+ ..++|+||||+.... ..++..-
T Consensus 257 --------------------------------------------~i~~~g---~~i~l~DT~G~~~~~-----~~ie~~g 284 (449)
T PRK05291 257 --------------------------------------------HINLDG---IPLRLIDTAGIRETD-----DEVEKIG 284 (449)
T ss_pred --------------------------------------------EEEECC---eEEEEEeCCCCCCCc-----cHHHHHH
Confidence 111111 247999999986321 1122222
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeec
Q 045702 178 RKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVN 257 (728)
Q Consensus 178 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 257 (728)
-..+..++..+| ++++|++++......+ ..++.. ..+.++++|+||+|+.+..... ......++.+++
T Consensus 285 i~~~~~~~~~aD-~il~VvD~s~~~s~~~-~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSA 352 (449)
T PRK05291 285 IERSREAIEEAD-LVLLVLDASEPLTEED-DEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISA 352 (449)
T ss_pred HHHHHHHHHhCC-EEEEEecCCCCCChhH-HHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEe
Confidence 234567899999 5555555554443333 444544 3468999999999997543211 112234667777
Q ss_pred CChhhhh
Q 045702 258 RSQEDIN 264 (728)
Q Consensus 258 rs~~~~~ 264 (728)
....+++
T Consensus 353 ktg~GI~ 359 (449)
T PRK05291 353 KTGEGID 359 (449)
T ss_pred eCCCCHH
Confidence 6655443
No 28
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=2.7e-11 Score=136.13 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhcccCCC--CCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCc
Q 045702 22 VIPIINRLQDIFSPVDGE--LSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDG 98 (728)
Q Consensus 22 l~~~~~~l~d~~~~~~g~--~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~ 98 (728)
+-++++.+...+..- +. .......+|+|+|.+++|||||+|+|+|.+....+.. .+|+-+....
T Consensus 148 v~~ll~~i~~~l~~~-~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~------------ 214 (429)
T TIGR03594 148 IGDLLDAILELLPEE-EEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP------------ 214 (429)
T ss_pred hHHHHHHHHHhcCcc-cccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE------------
Confidence 444555555544332 21 1122356899999999999999999999764332221 2222221111
Q ss_pred cchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHH
Q 045702 99 REWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIR 178 (728)
Q Consensus 99 ~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~ 178 (728)
+...+ ..++||||||+.+..... ..++....
T Consensus 215 --------------------------------------------~~~~~---~~~~liDT~G~~~~~~~~--~~~e~~~~ 245 (429)
T TIGR03594 215 --------------------------------------------FERNG---KKYLLIDTAGIRRKGKVT--EGVEKYSV 245 (429)
T ss_pred --------------------------------------------EEECC---cEEEEEECCCccccccch--hhHHHHHH
Confidence 11111 147999999997543211 12232333
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 179 KMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 179 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
..+..+++.+| ++++|+++......++ ..+++.+...+.+.|+|+||+|+.
T Consensus 246 ~~~~~~~~~ad-~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 246 LRTLKAIERAD-VVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHHhCC-EEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 44567899999 5555556666666666 677777777789999999999998
No 29
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.33 E-value=1.7e-11 Score=131.98 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
++.|++||.+|||||||||+|++...-......+|+.|+.-.+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~----------------------------------- 202 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRV----------------------------------- 202 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEe-----------------------------------
Confidence 578999999999999999999987521112224566665432211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
++...++|+||||++..+..+ ..+.....++++.++++|+++..++.+ .-
T Consensus 203 -----------------------~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~-s~ 252 (335)
T PRK12299 203 -----------------------DDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVD-PV 252 (335)
T ss_pred -----------------------CCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCC-CH
Confidence 011247999999998654322 123344566788899555554433322 22
Q ss_pred HH---HHHHHHHhCC--CCCceEEeeccCCCCCC
Q 045702 205 SD---ALQMAREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 205 ~~---~l~l~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
.+ +...++.+++ ...+.++|+||+|+.+.
T Consensus 253 e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 253 EDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred HHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 22 2223333433 36899999999999754
No 30
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.33 E-value=1.3e-11 Score=123.06 Aligned_cols=126 Identities=27% Similarity=0.343 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC--cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD--ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
-.+|.|+|||.+|+|||||+|+|+|..+.+..+. .||+.+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~------------------------------------ 65 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF------------------------------------ 65 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE------------------------------------
Confidence 4689999999999999999999999764332111 12211100
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCe--EEEEEecC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENC--IILAVSPA 198 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--iIL~V~~a 198 (728)
..+ ..++.||||||+.... .+....+.+..++..|+...+. ++++|+++
T Consensus 66 ----------------------~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 116 (196)
T PRK00454 66 ----------------------FEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDS 116 (196)
T ss_pred ----------------------Eec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEEec
Confidence 000 0258999999976431 2233345667788888887653 34445555
Q ss_pred CCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 199 NSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 199 ~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+......+ ..+.+.+...+.++++|+||+|+...+
T Consensus 117 ~~~~~~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 117 RHPLKELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred CCCCCHHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 54444333 344455555678899999999998654
No 31
>PRK15494 era GTPase Era; Provisional
Probab=99.33 E-value=1.9e-11 Score=132.42 Aligned_cols=151 Identities=18% Similarity=0.233 Sum_probs=87.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
..|++||.+|+|||||+|+|+|..+..++..+ +||.....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~--------------------------------------- 93 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITG--------------------------------------- 93 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEE---------------------------------------
Confidence 38999999999999999999998763221111 22211100
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
.+..++ .++.||||||+.... ..+...+...+..++..+|++|++ +++...+..
T Consensus 94 -------------------~~~~~~-~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aDvil~V-vD~~~s~~~ 147 (339)
T PRK15494 94 -------------------IITLKD-TQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSADLVLLI-IDSLKSFDD 147 (339)
T ss_pred -------------------EEEeCC-eEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCCEEEEE-EECCCCCCH
Confidence 011111 257999999986321 123344455566678899965555 455544544
Q ss_pred HHHHHHHHHhCCCCCceEEeeccCCCCCCCcc-HHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 205 SDALQMAREADPTGSRTIGVITKLDIMDRGTN-ACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 205 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
.+ ..++..+...+.+.|+|+||+|+.+.... ..+.+... .....++.++.....+++
T Consensus 148 ~~-~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~--~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 148 IT-HNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTEN--HPDSLLFPISALSGKNID 205 (339)
T ss_pred HH-HHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhc--CCCcEEEEEeccCccCHH
Confidence 43 34555554456788999999999754211 11232211 011346777776655443
No 32
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.32 E-value=2.1e-11 Score=116.98 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=48.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.+|||||+..... .....+......++...+.++++ +++.......+ ..+.+.+...+.+.++|+||+|+.
T Consensus 52 ~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~i~~v-~d~~~~~~~~~-~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 52 QIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVDLVLFV-VDASEPIGEGD-EFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCCEEEEE-EECCCccCchH-HHHHHHHHHhCCCEEEEEEchhcc
Confidence 589999999874421 11233555677888999955554 44444333333 455555655578999999999998
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
.
T Consensus 125 ~ 125 (168)
T cd04163 125 K 125 (168)
T ss_pred c
Confidence 4
No 33
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.32 E-value=1.7e-11 Score=118.74 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=71.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
|.|+|+|..++|||||+|+|++..+.......+|+-....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998776332111122111000
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
.+....+....+++|||||.. ....+...++..+|++++++ +++.... .
T Consensus 41 ----------------~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~il~v~-d~~~~~~-~ 89 (168)
T cd01887 41 ----------------EVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTDIAILVV-AADDGVM-P 89 (168)
T ss_pred ----------------EEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcCEEEEEE-ECCCCcc-H
Confidence 000000112368999999953 23445667788899555554 4443322 2
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
+....++.+...+.|.++|+||+|+...
T Consensus 90 ~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 90 QTIEAIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHHHHHcCCCEEEEEEceecccc
Confidence 2233444444457899999999999743
No 34
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=3.1e-11 Score=136.86 Aligned_cols=126 Identities=19% Similarity=0.223 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..++|+|||.+|+|||||+|+|+|..+...+. ..+|+-+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~------------------------------------- 252 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS------------------------------------- 252 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE-------------------------------------
Confidence 56899999999999999999999987532221 1222222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHH-HHHHhhcCCeEEEEEecCCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKM-IMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~-~~~yi~~~~~iIL~V~~a~~d 201 (728)
.+++.+ ..+.||||||+.+..... ...+.+..+ ...+++.+|++| +|.+++..
T Consensus 253 -------------------~~~~~~---~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vi-lV~Da~~~ 306 (472)
T PRK03003 253 -------------------LIELGG---KTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAV-VLIDASEP 306 (472)
T ss_pred -------------------EEEECC---EEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEE-EEEeCCCC
Confidence 111111 136899999986432211 111233333 356789999554 55556656
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
...++ +.++..+...+.++|+|+||+|+.+.
T Consensus 307 ~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 307 ISEQD-QRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred CCHHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 65555 56777776678999999999999853
No 35
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=4.2e-11 Score=131.59 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+..|++||.+|||||||||+|++........-.+||.|+...+...
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~---------------------------------- 204 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD---------------------------------- 204 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC----------------------------------
Confidence 4589999999999999999999976311122346777765432211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC----C
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN----S 200 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~----~ 200 (728)
+...++|+||||+...+..+. .......+++..++.+++++ ++. .
T Consensus 205 ------------------------~~~~i~~vDtPGi~~~a~~~~------~Lg~~~l~~i~radvlL~VV-D~s~~~~~ 253 (390)
T PRK12298 205 ------------------------DERSFVVADIPGLIEGASEGA------GLGIRFLKHLERCRVLLHLI-DIAPIDGS 253 (390)
T ss_pred ------------------------CCcEEEEEeCCCccccccchh------hHHHHHHHHHHhCCEEEEEe-ccCccccc
Confidence 011379999999986543211 11222335789999555555 443 1
Q ss_pred CcccHHHHHHHHHhCC-----CCCceEEeeccCCCCCC
Q 045702 201 DLATSDALQMAREADP-----TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~-----~~~rti~VltK~D~~~~ 233 (728)
+.. .+...+.+++.. ...|.|+|+||+|+...
T Consensus 254 d~~-e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 254 DPV-ENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred ChH-HHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 221 121233333332 35899999999999754
No 36
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.29 E-value=4.2e-11 Score=116.00 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
.++|+++|..++|||||+|+|+|..+.+.+....|.....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 41 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSI---------------------------------------- 41 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCce----------------------------------------
Confidence 4689999999999999999999986533322111111100
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
...+... ..++++|||||+....... ..++.........++..+| ++++|++++.....
T Consensus 42 ---------------~~~~~~~---~~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~ 100 (174)
T cd01895 42 ---------------DVPFEYD---GKKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERAD-VVLLVIDATEGITE 100 (174)
T ss_pred ---------------eeEEEEC---CeeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcch
Confidence 0001111 1247899999987542211 1122222223345677888 45555556555544
Q ss_pred HHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 205 SDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 205 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.. ..+.+.+...+.+.++|+||+|+.+..
T Consensus 101 ~~-~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 101 QD-LRIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred hH-HHHHHHHHhcCCCEEEEEeccccCCcc
Confidence 43 566666655678999999999998753
No 37
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.29 E-value=7.4e-11 Score=118.65 Aligned_cols=128 Identities=22% Similarity=0.334 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-..|.|+|+|.+|||||||+|+|++..+.+.+....|.-|...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 4578999999999999999999999875333222222222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
. +..++...++||||||+.... +......+...+ .++..+|.+++++ +++...
T Consensus 82 -------------------~--~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~-D~~~~~ 134 (204)
T cd01878 82 -------------------R--LRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVV-DASDPD 134 (204)
T ss_pred -------------------E--EEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEE-ECCCCC
Confidence 0 111111148999999986421 122223333333 4567788555544 454332
Q ss_pred ccH---HHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 203 ATS---DALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 203 ~~~---~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
... .+..+++.+...+.++++|+||+|+....
T Consensus 135 ~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 135 YEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred hhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 222 23456666665678999999999997643
No 38
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=4.3e-11 Score=121.77 Aligned_cols=129 Identities=17% Similarity=0.280 Sum_probs=87.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
-+|+|||.+|+|||||.|.++|.++.|++... +||+-+--.
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-------------------------------------- 114 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-------------------------------------- 114 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE--------------------------------------
Confidence 37999999999999999999999997776653 334332211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC-CCcc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN-SDLA 203 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~-~d~~ 203 (728)
...+..++.|+||||+.......+.... ..+..-.+..+..+|+++++++.++ ....
T Consensus 115 ---------------------~ts~eTQlvf~DTPGlvs~~~~r~~~l~-~s~lq~~~~a~q~AD~vvVv~Das~tr~~l 172 (379)
T KOG1423|consen 115 ---------------------ITSGETQLVFYDTPGLVSKKMHRRHHLM-MSVLQNPRDAAQNADCVVVVVDASATRTPL 172 (379)
T ss_pred ---------------------EecCceEEEEecCCcccccchhhhHHHH-HHhhhCHHHHHhhCCEEEEEEeccCCcCcc
Confidence 1111126899999999876544333322 2344456778899996655555442 2223
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
....+..++++. ..+.|+|+||+|.......
T Consensus 173 ~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 173 HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred ChHHHHHHHHHh--cCCceeeccchhcchhhhH
Confidence 334577888887 5899999999999876544
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.26 E-value=5.8e-11 Score=133.45 Aligned_cols=123 Identities=24% Similarity=0.259 Sum_probs=84.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.|++||.+|+|||||+|+|+|.....++. ..+||-.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~--------------------------------------- 41 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGD--------------------------------------- 41 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEE---------------------------------------
Confidence 48999999999999999999976422222 12333222111
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
+.+.+ ..++||||||+... ...+...+...+..+++.+| ++++|+++...+...
T Consensus 42 -----------------~~~~~---~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~ 95 (429)
T TIGR03594 42 -----------------AEWGG---REFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPE 95 (429)
T ss_pred -----------------EEECC---eEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHH
Confidence 11111 13799999998532 23456778888999999999 566666676666555
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
+ ..+++.+...+.++++|+||+|+.....
T Consensus 96 d-~~i~~~l~~~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 96 D-EEIAKWLRKSGKPVILVANKIDGKKEDA 124 (429)
T ss_pred H-HHHHHHHHHhCCCEEEEEECccCCcccc
Confidence 5 5666666666899999999999986543
No 40
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.26 E-value=5e-11 Score=115.73 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.|++||.+|||||||+|+|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998764
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.25 E-value=7.4e-11 Score=140.06 Aligned_cols=126 Identities=25% Similarity=0.270 Sum_probs=81.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcc-cCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPR-GCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~-~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..++|+++|.+|+|||||+|+|+|.++..+ ....+|+-+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~------------------------------------- 491 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE------------------------------------- 491 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee-------------------------------------
Confidence 568999999999999999999999875222 112223222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHH-HHHHHhhcCCeEEEEEecCCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRK-MIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~-~~~~yi~~~~~iIL~V~~a~~d 201 (728)
.+.+.+ ..++||||||+.+..... ...+.+.. ....+++.+| ++++|++++..
T Consensus 492 -------------------~~~~~~---~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~ad-vvilViDat~~ 545 (712)
T PRK09518 492 -------------------IVEIDG---EDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSE-LALFLFDASQP 545 (712)
T ss_pred -------------------EEEECC---CEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCC-EEEEEEECCCC
Confidence 111111 247899999986432211 11122222 2456788999 55556667666
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
...++ ..++..+...+.++|+|+||+|+.+.
T Consensus 546 ~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 546 ISEQD-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred CCHHH-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 66666 66777776678999999999999864
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.4e-10 Score=123.46 Aligned_cols=128 Identities=30% Similarity=0.337 Sum_probs=86.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
-++||++|.+|+|||||||+|+..+. .+++..|.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~G----------------------------------------- 301 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVPG----------------------------------------- 301 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCCC-----------------------------------------
Confidence 47999999999999999999998886 34443331
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
.+.|.|...+. ++...+.|+||.|+.+.. . ..++..--+..++-+..+| +|++|++|......
T Consensus 302 -----------TTRDaiea~v~-~~G~~v~L~DTAGiRe~~-~---~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~t~ 364 (531)
T KOG1191|consen 302 -----------TTRDAIEAQVT-VNGVPVRLSDTAGIREES-N---DGIEALGIERARKRIERAD-VILLVVDAEESDTE 364 (531)
T ss_pred -----------cchhhheeEee-cCCeEEEEEecccccccc-C---ChhHHHhHHHHHHHHhhcC-EEEEEecccccccc
Confidence 11222333333 333458999999998721 1 1233344466788899999 77888888655555
Q ss_pred HHHHHHHHHhCC------------CCCceEEeeccCCCCCCCcc
Q 045702 205 SDALQMAREADP------------TGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 205 ~~~l~l~~~~d~------------~~~rti~VltK~D~~~~~~~ 236 (728)
++ +.+++.+.. ...|.|+|.||.|+..+...
T Consensus 365 sd-~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 365 SD-LKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred cc-hHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 55 555554432 23688899999999877443
No 43
>COG2262 HflX GTPases [General function prediction only]
Probab=99.24 E-value=2.6e-10 Score=121.47 Aligned_cols=169 Identities=20% Similarity=0.310 Sum_probs=112.0
Q ss_pred CCCCCCCCCCccchhhhhhhHHHHHHHHHHhhcccC-------CCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCccc
Q 045702 2 GEEASFSNKNVAASTTIGSSVIPIINRLQDIFSPVD-------GELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRG 74 (728)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~d~~~~~~-------g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~ 74 (728)
|...-|-+|+...-...-..+...|.+|+.-+..+. ........|+|++||..|||||||+|+|+|...+-.+
T Consensus 142 GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d 221 (411)
T COG2262 142 GGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVAD 221 (411)
T ss_pred cCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccc
Confidence 444566677777777766677777777776665551 0113568999999999999999999999998763333
Q ss_pred CCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeE
Q 045702 75 CDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMT 154 (728)
Q Consensus 75 ~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~Lt 154 (728)
.-..|=-||.= ++.+ ++...+.
T Consensus 222 ~LFATLdpttR--------------------------------------------------------~~~l--~~g~~vl 243 (411)
T COG2262 222 QLFATLDPTTR--------------------------------------------------------RIEL--GDGRKVL 243 (411)
T ss_pred cccccccCcee--------------------------------------------------------EEEe--CCCceEE
Confidence 32333333221 1111 1122579
Q ss_pred EEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 155 LVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 155 lVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
|.||-||++ +-|+.+.+.++... .-...+| ++|.|++++.+ +.. .....++.++.-...|+|.|+||+|++
T Consensus 244 LtDTVGFI~----~LP~~LV~AFksTL-EE~~~aD-lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 244 LTDTVGFIR----DLPHPLVEAFKSTL-EEVKEAD-LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred EecCccCcc----cCChHHHHHHHHHH-HHhhcCC-EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 999999984 34667776766544 4467888 55556555544 221 124567888877789999999999998
Q ss_pred CCC
Q 045702 232 DRG 234 (728)
Q Consensus 232 ~~~ 234 (728)
...
T Consensus 318 ~~~ 320 (411)
T COG2262 318 EDE 320 (411)
T ss_pred Cch
Confidence 654
No 44
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=1.2e-10 Score=131.98 Aligned_cols=124 Identities=24% Similarity=0.253 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
-..|.|+|||.+|+|||||+|+|+|..+...+.. .+|+-.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~--------------------------------------- 76 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDR--------------------------------------- 76 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEee---------------------------------------
Confidence 4579999999999999999999999764211111 111111
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
+...+...+ ..+.||||||+... ...+...+...+..|+..+| +||+|+++...
T Consensus 77 -------------------~~~~~~~~~-~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD-~il~VvD~~~~ 130 (472)
T PRK03003 77 -------------------VSYDAEWNG-RRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTAD-AVLFVVDATVG 130 (472)
T ss_pred -------------------EEEEEEECC-cEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCC-EEEEEEECCCC
Confidence 111111111 14789999998632 12355677788889999999 45555555544
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
....+ ..++..+...+.|+|+|+||+|+..
T Consensus 131 ~s~~~-~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 131 ATATD-EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred CCHHH-HHHHHHHHHcCCCEEEEEECccCCc
Confidence 44333 4566666667899999999999964
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.23 E-value=7e-11 Score=114.27 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=55.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.|+||||.. ....+...|+..++++|+++...+.. .-.+ ++..++...+.+.++++|.||+
T Consensus 53 ~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~pi~vv~nK~ 118 (165)
T cd01868 53 KAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKKQ-TFENVERWLKELRDHADSNIVIMLVGNKS 118 (165)
T ss_pred EEEEEeCCChH-------------HHHHHHHHHHCCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 57899999943 45567778899999777666544311 1112 2334445555568999999999
Q ss_pred CCCCCCccHH----HhHcCCCcccCCceeEeecCChh
Q 045702 229 DIMDRGTNAC----NFLLGKVVPLRLGYVGVVNRSQE 261 (728)
Q Consensus 229 D~~~~~~~~~----~~l~~~~~~l~~g~~~v~~rs~~ 261 (728)
|+........ .+.. ..+.+|+.++++...
T Consensus 119 Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 151 (165)
T cd01868 119 DLRHLRAVPTEEAKAFAE----KNGLSFIETSALDGT 151 (165)
T ss_pred cccccccCCHHHHHHHHH----HcCCEEEEEECCCCC
Confidence 9975432111 2221 123556766666543
No 46
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.22 E-value=1.4e-10 Score=130.56 Aligned_cols=122 Identities=25% Similarity=0.280 Sum_probs=79.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.|.|++||.+|+|||||+|+|+|.....++.. .+|+-....
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~-------------------------------------- 42 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYG-------------------------------------- 42 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEE--------------------------------------
Confidence 37899999999999999999999764222111 122211110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+.+.+ ..+.||||||+.... .+....+...+..++..+|. +++|+++.....
T Consensus 43 ------------------~~~~~~---~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~-il~vvd~~~~~~ 95 (435)
T PRK00093 43 ------------------EAEWLG---REFILIDTGGIEPDD-----DGFEKQIREQAELAIEEADV-ILFVVDGRAGLT 95 (435)
T ss_pred ------------------EEEECC---cEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCE-EEEEEECCCCCC
Confidence 111111 258999999997521 23555677888899999995 555555655544
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+ ..+++.+...+.++|+|+||+|+.+
T Consensus 96 ~~~-~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 96 PAD-EEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred HHH-HHHHHHHHHcCCcEEEEEECccCcc
Confidence 444 4455555455799999999999754
No 47
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.22 E-value=6.7e-11 Score=112.84 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=50.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.+|||||+..... .....+...+..++...|.++ +|+++.......+ ..+.+.+...+.++++|+||+|+.
T Consensus 46 ~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 46 EFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVIL-FVVDGREGLTPAD-EEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEE-EEEeccccCCccH-HHHHHHHHhcCCCEEEEEECcccC
Confidence 589999999975321 234455566677888999544 4455544443333 345555555579999999999997
Q ss_pred CCC
Q 045702 232 DRG 234 (728)
Q Consensus 232 ~~~ 234 (728)
...
T Consensus 119 ~~~ 121 (157)
T cd01894 119 KEE 121 (157)
T ss_pred ChH
Confidence 643
No 48
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.22 E-value=1.6e-10 Score=111.98 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 49
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.21 E-value=1e-10 Score=125.95 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
++.|++||.+|||||||||+|++..........+|+.|+.-.+.-
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~----------------------------------- 201 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV----------------------------------- 201 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe-----------------------------------
Confidence 578999999999999999999987532112224566665432210
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-- 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-- 202 (728)
.+...++|+||||+...+..+ ..+.....+++.+++.+++++..++.+.
T Consensus 202 -----------------------~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~ 252 (329)
T TIGR02729 202 -----------------------DDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRD 252 (329)
T ss_pred -----------------------CCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccC
Confidence 011247999999998553321 1233445667788995555544332211
Q ss_pred ccHHHHHH---HHHhCC--CCCceEEeeccCCCCCC
Q 045702 203 ATSDALQM---AREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~~l~l---~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
.-.+...+ +..+.+ ...+.++|+||+|+.+.
T Consensus 253 ~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 253 PIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 11121222 233332 36899999999999754
No 50
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=2.5e-10 Score=118.01 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
..-.+|+|+|..|+|||||+|+|+|....+++.. .+|+.+.....
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~---------------------------------- 74 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG---------------------------------- 74 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE----------------------------------
Confidence 4456899999999999999999999876555332 33433322210
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc--CCeEEEEEecCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ--ENCIILAVSPAN 199 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~--~~~iIL~V~~a~ 199 (728)
.. +...++||||||+.....++ .....+.+.+.+|+.. .+ +||+|...+
T Consensus 75 ----------------------~~---~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~id-vIL~V~rlD 125 (249)
T cd01853 75 ----------------------TV---DGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPD-VVLYVDRLD 125 (249)
T ss_pred ----------------------EE---CCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCC-EEEEEEcCC
Confidence 00 01247999999998553211 1234455667788873 45 566665443
Q ss_pred C-CcccHHHHHHHHHhCC---C--CCceEEeeccCCCCCCCc
Q 045702 200 S-DLATSDALQMAREADP---T--GSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 200 ~-d~~~~~~l~l~~~~d~---~--~~rti~VltK~D~~~~~~ 235 (728)
. .....+ ..+++.+.. . -.++++|+||+|...+..
T Consensus 126 ~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 126 MYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred CCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 2 333333 344443322 1 258999999999987654
No 51
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.20 E-value=1.4e-10 Score=116.28 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=44.2
Q ss_pred CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 150 VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 150 ~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+++++|||||+..... ...+.++.+ -+...| +++++.+ .++...+ ..+++.+...+.++++|+||+|
T Consensus 51 ~~~l~l~DtpG~~~~~~-----~~~~~l~~~---~~~~~d-~~l~v~~--~~~~~~d-~~~~~~l~~~~~~~ilV~nK~D 118 (197)
T cd04104 51 FPNVTLWDLPGIGSTAF-----PPDDYLEEM---KFSEYD-FFIIISS--TRFSSND-VKLAKAIQCMGKKFYFVRTKVD 118 (197)
T ss_pred CCCceEEeCCCCCcccC-----CHHHHHHHh---CccCcC-EEEEEeC--CCCCHHH-HHHHHHHHHhCCCEEEEEeccc
Confidence 34789999999874321 111222211 145567 4444543 3455555 5666666666889999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+..+
T Consensus 119 ~~~~ 122 (197)
T cd04104 119 RDLS 122 (197)
T ss_pred chhh
Confidence 9653
No 52
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=1.1e-10 Score=130.44 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=29.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceE
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLA 84 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~ 84 (728)
.+..|++||.+|||||||||+|++...-..+.-.+|+.|..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~l 198 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNL 198 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceE
Confidence 35789999999999999999999875311122235666544
No 53
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.20 E-value=1.7e-10 Score=111.06 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=40.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH--HHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD--ALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+++|||||.. .+...+..++..+|++++ |++++.++..+. .+.+++... ..+.++|+||+|
T Consensus 52 ~~~~~DtpG~~-------------~~~~~~~~~~~~ad~ii~-V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~D 115 (164)
T cd04171 52 RLGFIDVPGHE-------------KFIKNMLAGAGGIDLVLL-VVAADEGIMPQTREHLEILELLG--IKRGLVVLTKAD 115 (164)
T ss_pred EEEEEECCChH-------------HHHHHHHhhhhcCCEEEE-EEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECcc
Confidence 58999999953 233445677889995555 445544332222 223333332 248999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+...
T Consensus 116 l~~~ 119 (164)
T cd04171 116 LVDE 119 (164)
T ss_pred ccCH
Confidence 9754
No 54
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.19 E-value=4.1e-10 Score=107.26 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=46.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+++|||||+..... ......-..+..++..++ ++++|.++.......+ ..+.+. ..+.++++|+||+|+.
T Consensus 50 ~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~-~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 50 PVRLIDTAGIRETED-----EIEKIGIERAREAIEEAD-LVLFVIDASRGLDEED-LEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEEEECCCcCCCcc-----hHHHHHHHHHHHHHhhCC-EEEEEEECCCCCCHHH-HHHHHh--hcCCCEEEEEEchhcC
Confidence 579999999864421 122222234556778889 5555556654444444 444444 3478999999999998
Q ss_pred CCC
Q 045702 232 DRG 234 (728)
Q Consensus 232 ~~~ 234 (728)
+..
T Consensus 121 ~~~ 123 (157)
T cd04164 121 PDS 123 (157)
T ss_pred Ccc
Confidence 644
No 55
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=2.3e-10 Score=126.49 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=72.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
++.|++||.+|||||||||+|++...--.....+|+.|....+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~------------------------------------ 201 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVE------------------------------------ 201 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEE------------------------------------
Confidence 45899999999999999999998762111122345555432111
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC--c
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD--L 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d--~ 202 (728)
+ ++...++|+||||++..+..+ ..+.....+++.+++.+|+++..++.+ -
T Consensus 202 --------------------~--~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~llI~VID~s~~~~~d 253 (424)
T PRK12297 202 --------------------T--DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTRVIVHVIDMSGSEGRD 253 (424)
T ss_pred --------------------E--eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCCEEEEEEeCCccccCC
Confidence 1 001247999999998643321 122333456677889555555543321 1
Q ss_pred ccHH---HHHHHHHhCC--CCCceEEeeccCCCC
Q 045702 203 ATSD---ALQMAREADP--TGSRTIGVITKLDIM 231 (728)
Q Consensus 203 ~~~~---~l~l~~~~d~--~~~rti~VltK~D~~ 231 (728)
...+ +...++.+.+ ...+.|+|+||+|+.
T Consensus 254 p~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 254 PIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred hHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 1112 2223334443 368999999999984
No 56
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.19 E-value=1.5e-10 Score=112.56 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh---CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA---DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~---d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++... ..-.-.+...++..+ ...+.+.++|.||+
T Consensus 54 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~il~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~ 119 (168)
T cd01866 54 KLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDIT-RRETFNHLTSWLEDARQHSNSNMTIMLIGNKC 119 (168)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhccCCEEEEEEECC-CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 47899999932 45667788999999766666543 222222223333322 23468999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 120 Dl~~~ 124 (168)
T cd01866 120 DLESR 124 (168)
T ss_pred ccccc
Confidence 99753
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.19 E-value=1.9e-10 Score=111.71 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc---HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT---SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.|+||||.. ....+...+++.+|++|+++...+ .-.- ..++..++...+.+.++++|.||+
T Consensus 53 ~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 118 (167)
T cd01867 53 KLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVYDITD-EKSFENIRNWMRNIEEHASEDVERMLVGNKC 118 (167)
T ss_pred EEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEEECcC-HHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 58999999943 344566788999997776665432 1111 122333334445578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 119 Dl~~~ 123 (167)
T cd01867 119 DMEEK 123 (167)
T ss_pred ccccc
Confidence 99853
No 58
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.18 E-value=1.5e-10 Score=137.14 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=61.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||+.+......+...++ .+...|+. .+| ++++|++++....+ +.+..++...+.|+++|+||+|
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E---~i~~~~l~~~~aD-~vI~VvDat~ler~---l~l~~ql~e~giPvIvVlNK~D 123 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDAD-LLINVVDASNLERN---LYLTLQLLELGIPCIVALNMLD 123 (772)
T ss_pred EEEEEECCCccccccccccccHHH---HHHHHHHhccCCC-EEEEEecCCcchhh---HHHHHHHHHcCCCEEEEEEchh
Confidence 479999999976432211122222 24455654 678 44556666542222 4455666667899999999999
Q ss_pred CCCCCccHH--HhHcCCCcccCCceeEeecCChhhhh
Q 045702 230 IMDRGTNAC--NFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 230 ~~~~~~~~~--~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
+.++..... +.+. ..++.+++.++.+..++++
T Consensus 124 l~~~~~i~id~~~L~---~~LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 124 IAEKQNIRIDIDALS---ARLGCPVIPLVSTRGRGIE 157 (772)
T ss_pred hhhccCcHHHHHHHH---HHhCCCEEEEEeecCCCHH
Confidence 975432211 2222 2355677888887766544
No 59
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.18 E-value=1.6e-10 Score=111.12 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHH---hCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMARE---ADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~---~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....++..+++.++++|+++. .+..-.-.+...++.. ..+.+.++++|+||+
T Consensus 50 ~l~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 115 (161)
T cd01861 50 RLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVVVYD-ITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115 (161)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECh
Confidence 47899999932 445678889999996555554 4322111222222222 222358999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 116 D~~~~ 120 (161)
T cd01861 116 DLSDK 120 (161)
T ss_pred hcccc
Confidence 99643
No 60
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.17 E-value=1.7e-10 Score=111.86 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=45.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||.. ....+...|++..+++++++...+..- .-.+++..++...+...++++|.||+|
T Consensus 51 ~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 51 KLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 47899999943 345567889999997776665443211 111233334444445688999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 118 l~~~ 121 (165)
T cd01865 118 MEDE 121 (165)
T ss_pred cCcc
Confidence 9754
No 61
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.17 E-value=4.4e-10 Score=117.88 Aligned_cols=140 Identities=15% Similarity=0.298 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEEeeeCCCCCCCC
Q 045702 19 GSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALMLVNRPRNPGDD 97 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~ 97 (728)
..+|++++.+|.+. +.+..+|+|+|..|+||||++|+|+|.....++. ..+|..++...
T Consensus 21 q~~l~~~l~~l~~~---------~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------- 80 (313)
T TIGR00991 21 QTKLLELLGKLKEE---------DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------- 80 (313)
T ss_pred HHHHHHHHHhcccc---------cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-----------
Confidence 46778888777632 4677899999999999999999999987532221 11222222110
Q ss_pred ccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHH
Q 045702 98 GREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARI 177 (728)
Q Consensus 98 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~ 177 (728)
..+ +...+++|||||+.+. ....+..
T Consensus 81 ---------------------------------------------~~~---~G~~l~VIDTPGL~d~------~~~~e~~ 106 (313)
T TIGR00991 81 ---------------------------------------------RTR---AGFTLNIIDTPGLIEG------GYINDQA 106 (313)
T ss_pred ---------------------------------------------EEE---CCeEEEEEECCCCCch------HHHHHHH
Confidence 000 1125899999999854 1233445
Q ss_pred HHHHHHHhh--cCCeEEEEEecCCC-Cccc--HHHHHHHHHhCC--CCCceEEeeccCCCCCC
Q 045702 178 RKMIMAYIR--QENCIILAVSPANS-DLAT--SDALQMAREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 178 ~~~~~~yi~--~~~~iIL~V~~a~~-d~~~--~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
.+.+..|+. ..| +||+|...+. .+.. ...++.++.+-. --.++|+|+|++|..++
T Consensus 107 ~~~ik~~l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 107 VNIIKRFLLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHHhhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 566666665 356 5666643321 2322 223444444321 23689999999998864
No 62
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.17 E-value=2.4e-10 Score=109.90 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=53.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCe--EEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENC--IILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+++|||||+..... +.+..+.+..++..|+...+. .++++++........+ ..+.+.+...+.++++|+||+|
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~~~~~vi~v~nK~D 121 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID-LEMLDWLEELGIPFLVVLTKAD 121 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHHcCCCEEEEEEchh
Confidence 589999999865422 334455677788888876542 3455655554433333 4556666666789999999999
Q ss_pred CCCCCc
Q 045702 230 IMDRGT 235 (728)
Q Consensus 230 ~~~~~~ 235 (728)
++..+.
T Consensus 122 ~~~~~~ 127 (170)
T cd01876 122 KLKKSE 127 (170)
T ss_pred cCChHH
Confidence 986543
No 63
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.17 E-value=3.1e-10 Score=111.88 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=46.3
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||.. ........++..+|++++++ ++........ ..++..+...+.++++|+||+|+
T Consensus 62 ~~~~liDtpG~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~-~~~~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 62 RRVNFIDTPGHE-------------DFSSEVIRGLSVSDGAILVV-DANEGVQPQT-REHLRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHHhcCEEEEEE-ECCCCCcHHH-HHHHHHHHHCCCCeEEEEECCCC
Confidence 368999999965 23455777888999666555 4544333222 34444444467999999999999
Q ss_pred CCC
Q 045702 231 MDR 233 (728)
Q Consensus 231 ~~~ 233 (728)
...
T Consensus 127 ~~~ 129 (189)
T cd00881 127 VGE 129 (189)
T ss_pred cch
Confidence 973
No 64
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.16 E-value=1.7e-10 Score=109.72 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH---HHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ---MAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~---l~~~~d~~~~rti~VltK~ 228 (728)
.+.++|+||.. ....+...++++.+++|+++.... .-.-..+.. .+......+.++++|+||+
T Consensus 50 ~~~l~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 115 (159)
T cd00154 50 KLQIWDTAGQE-------------RFRSITPSYYRGAHGAILVYDITN-RESFENLDKWLKELKEYAPENIPIILVGNKI 115 (159)
T ss_pred EEEEEecCChH-------------HHHHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 57899999953 345578889999996666665433 211222222 3333333468999999999
Q ss_pred CCC
Q 045702 229 DIM 231 (728)
Q Consensus 229 D~~ 231 (728)
|+.
T Consensus 116 D~~ 118 (159)
T cd00154 116 DLE 118 (159)
T ss_pred ccc
Confidence 997
No 65
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.6e-10 Score=118.28 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=110.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCc---ccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcc-----cC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLP---RGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRF-----FD 114 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP---~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~-----~d 114 (728)
..-|.|.++|..|.||||+|+.|++.++ | .|..++|..-+.+-..++... .||... ..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~-------------ipGnal~vd~~~p 121 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGS-------------IPGNALVVDAKKP 121 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccc-------------cCCceeeecCCCc
Confidence 4579999999999999999999999885 6 245566666555443332211 123221 12
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEE
Q 045702 115 FTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILA 194 (728)
Q Consensus 115 ~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~ 194 (728)
|..+... +.+|-..-.+....++-+..+++|||||+-+..+. ..+-.--+...+..|+.++|-|||+
T Consensus 122 F~gL~~F-----------G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLl 188 (532)
T KOG1954|consen 122 FRGLNKF-----------GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILL 188 (532)
T ss_pred hhhhhhh-----------HHHHHHHHHHhcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEE
Confidence 3322221 11222222334455555568999999999876432 1111223567889999999988888
Q ss_pred EecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 195 VSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 195 V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
..+..-|++..- .+.+..+......+-+|+||+|.++..+-
T Consensus 189 fD~hKLDIsdEf-~~vi~aLkG~EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 189 FDAHKLDISDEF-KRVIDALKGHEDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred echhhccccHHH-HHHHHHhhCCcceeEEEeccccccCHHHH
Confidence 888888876654 66777887777899999999999987653
No 66
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.16 E-value=5.6e-10 Score=105.69 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=49.6
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
.++++|||||+....... ......+..++..++.+++ |+++........ ..+.......+.++++|+||+|+
T Consensus 45 ~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~-v~~~~~~~~~~~-~~~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLG------REREELARRVLERADLILF-VVDADLRADEEE-EKLLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEE-EEeCCCCCCHHH-HHHHHHHHhcCCeEEEEEEcccc
Confidence 368999999987543211 1223566778899995554 555544443333 22444554557899999999999
Q ss_pred CCCCc
Q 045702 231 MDRGT 235 (728)
Q Consensus 231 ~~~~~ 235 (728)
.....
T Consensus 117 ~~~~~ 121 (163)
T cd00880 117 LPEEE 121 (163)
T ss_pred CChhh
Confidence 87543
No 67
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=3.8e-10 Score=112.36 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=45.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||-. ....+...|+..++++|+++...+.+- . -..++..+....+.+.|+++|+||+|
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQE-------------RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEeCCCcH-------------HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 47899999932 445566788999996666664433210 0 11234455555666789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 118 l~~ 120 (191)
T cd04112 118 MSG 120 (191)
T ss_pred chh
Confidence 974
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.15 E-value=3.4e-10 Score=113.50 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHH---Hh---CCCCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAR---EA---DPTGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~---~~---d~~~~rti~Vl 225 (728)
.+.||||||....+.. ....+......+++.+|++|+++...+.+ +-..+..+.+ .. ...+.|+++|.
T Consensus 50 ~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 50 DLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred EEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 4789999997543211 11122334566789999766666544321 1111122222 22 24578999999
Q ss_pred ccCCCCCC
Q 045702 226 TKLDIMDR 233 (728)
Q Consensus 226 tK~D~~~~ 233 (728)
||+|+...
T Consensus 124 NK~Dl~~~ 131 (198)
T cd04142 124 NKRDQQRH 131 (198)
T ss_pred ECcccccc
Confidence 99999653
No 69
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.15 E-value=3.3e-10 Score=109.34 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHh-CC----CCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREA-DP----TGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~-d~----~~~rti~V 224 (728)
.+.|+||||.. ....+...|++.++++|+++...+... .-..++..+... .+ .+.|+++|
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 50 RVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred EEEEEECCccH-------------HHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence 58999999953 334567778999997777765443211 111222233332 22 46899999
Q ss_pred eccCCCCC
Q 045702 225 ITKLDIMD 232 (728)
Q Consensus 225 ltK~D~~~ 232 (728)
.||+|+..
T Consensus 117 ~nK~Dl~~ 124 (168)
T cd04119 117 ANKIDLTK 124 (168)
T ss_pred EEchhccc
Confidence 99999974
No 70
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.14 E-value=4e-10 Score=109.25 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=46.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.. ....+...|++.++++|+++...+..- .-..++..++.......+.++|.||+|
T Consensus 52 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 52 KLQIWDTAGQE-------------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 57899999932 455677889999998777776543211 011222333334444678999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+....
T Consensus 119 l~~~~ 123 (166)
T cd04122 119 LEAQR 123 (166)
T ss_pred ccccc
Confidence 97543
No 71
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.14 E-value=3.4e-10 Score=109.66 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=44.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...|++.++++|+++...+.+ .-. .++..++.....+.+.++|.||+
T Consensus 52 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEEECcCHH-HHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 47899999943 34567788999999777777554321 111 12333334443468999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 118 Dl~~~ 122 (166)
T cd01869 118 DLTDK 122 (166)
T ss_pred hcccc
Confidence 98654
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.14 E-value=3.2e-10 Score=109.29 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=44.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|++.++++|+++...+.. +-.... .+.+.....+.|+++|+||
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 51 ILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFSVTDRG-SFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 47899999954 33456778999999777777544321 111111 2223334457899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 117 ~Dl~~~ 122 (164)
T cd04145 117 ADLEHQ 122 (164)
T ss_pred cccccc
Confidence 999754
No 73
>PRK04213 GTP-binding protein; Provisional
Probab=99.13 E-value=7.3e-10 Score=111.10 Aligned_cols=125 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
-..+.|+++|..|+|||||+|+|+|..+ +.+.. .+|+.+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~-------------------------------------- 47 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPN-------------------------------------- 47 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCce--------------------------------------
Confidence 3467999999999999999999999874 33221 1121111
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh-cCC--eEEEEEecC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR-QEN--CIILAVSPA 198 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~-~~~--~iIL~V~~a 198 (728)
.+.+. ++++|||||+..... -+....+.++.++..|+. ..+ .+++.|+++
T Consensus 48 --------------------~~~~~-----~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~ 100 (201)
T PRK04213 48 --------------------HYDWG-----DFILTDLPGFGFMSG--VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDG 100 (201)
T ss_pred --------------------EEeec-----ceEEEeCCccccccc--cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeC
Confidence 11111 479999999743211 112234566777777775 322 144455555
Q ss_pred CCCcc----------cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 199 NSDLA----------TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 199 ~~d~~----------~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..... ......+.+.+...+.|.++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 101 KSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred ccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 32111 011133444444457899999999999754
No 74
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.13 E-value=3.1e-10 Score=109.26 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH---HHHHh-CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ---MAREA-DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~---l~~~~-d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|++.+++++|++...+.. +-.+... .+... ...+.|.++|.||
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 50 MLEILDTAGTE-------------QFTAMRDLYIKNGQGFVLVYSITSQS-SFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred EEEEEECCCcc-------------ccchHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 47899999954 33456678899999777776544321 1112222 22222 2346899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 116 ~Dl~~~ 121 (163)
T cd04136 116 CDLEDE 121 (163)
T ss_pred cccccc
Confidence 999753
No 75
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.13 E-value=5.1e-10 Score=132.99 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=83.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
.+|.|+++|.+|+|||||+|+|+|..+..++.. .+||-...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~-------------------------------------- 315 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVS-------------------------------------- 315 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEE--------------------------------------
Confidence 358899999999999999999999764222111 12221111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
......+ ..+.||||||+.... ..+...+...+..|+..+| ++|+|+++...+
T Consensus 316 --------------------~~~~~~~-~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~aD-~iL~VvDa~~~~ 368 (712)
T PRK09518 316 --------------------YDAEWAG-TDFKLVDTGGWEADV-----EGIDSAIASQAQIAVSLAD-AVVFVVDGQVGL 368 (712)
T ss_pred --------------------EEEEECC-EEEEEEeCCCcCCCC-----ccHHHHHHHHHHHHHHhCC-EEEEEEECCCCC
Confidence 1111111 147899999986321 2355667788889999999 555566666655
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
...+ ..+++.+...+.++|+|+||+|+...
T Consensus 369 ~~~d-~~i~~~Lr~~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 369 TSTD-ERIVRMLRRAGKPVVLAVNKIDDQAS 398 (712)
T ss_pred CHHH-HHHHHHHHhcCCCEEEEEECcccccc
Confidence 5555 45666666778999999999998653
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.13 E-value=3.8e-10 Score=108.61 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=45.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. .+..+...+++.++++|+++...+ ...-.. ++..++.+...+.+.++|+||+
T Consensus 50 ~l~l~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 115 (161)
T cd04113 50 KLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITN-RTSFEALPTWLSDARALASPNIVVILVGNKS 115 (161)
T ss_pred EEEEEECcchH-------------HHHHhHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 57899999943 345577888999997776665443 222222 2233334444578999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+....
T Consensus 116 D~~~~~ 121 (161)
T cd04113 116 DLADQR 121 (161)
T ss_pred hcchhc
Confidence 997643
No 77
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.13 E-value=4.7e-10 Score=104.65 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=40.0
Q ss_pred EEEeCCCC-cccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 154 TLVDLPGI-TKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 154 tlVDtPGi-~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
.+|||||= ...+ .... -......+++ +|+++.+|+.....-. -.+++.+ ..|+|||+||+|+..
T Consensus 39 ~~IDTPGEyiE~~---------~~y~-aLi~ta~dad-~V~ll~dat~~~~~~p-P~fa~~f---~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 39 NTIDTPGEYIENP---------RFYH-ALIVTAQDAD-VVLLLQDATEPRSVFP-PGFASMF---NKPVIGVITKIDLPS 103 (143)
T ss_pred cEEECChhheeCH---------HHHH-HHHHHHhhCC-EEEEEecCCCCCccCC-chhhccc---CCCEEEEEECccCcc
Confidence 46999994 3331 2333 3344556788 6777777765432211 3455554 479999999999984
No 78
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.12 E-value=9.7e-10 Score=105.65 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHH---hCCCCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMARE---ADPTGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~---~d~~~~rti~Vl 225 (728)
.+.++||||.. ....+...|+..++++|+++...+ ...-. ..+..+.. +...+.|+++|+
T Consensus 46 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 111 (162)
T cd04157 46 SFTAFDMSGQG-------------KYRGLWEHYYKNIQGIIFVIDSSD-RLRLVVVKDELELLLNHPDIKHRRVPILFFA 111 (162)
T ss_pred EEEEEECCCCH-------------hhHHHHHHHHccCCEEEEEEeCCc-HHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence 47999999954 345677789999997666665432 21111 11222211 123478999999
Q ss_pred ccCCCCCC
Q 045702 226 TKLDIMDR 233 (728)
Q Consensus 226 tK~D~~~~ 233 (728)
||+|+.+.
T Consensus 112 NK~Dl~~~ 119 (162)
T cd04157 112 NKMDLPDA 119 (162)
T ss_pred eCccccCC
Confidence 99999754
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.12 E-value=6.1e-10 Score=107.29 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+||+||.. ....+...|++.++++|+++...+.+. . ...++..++.......+.++|+||+|
T Consensus 51 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D 117 (163)
T cd01860 51 KFEIWDTAGQE-------------RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKAD 117 (163)
T ss_pred EEEEEeCCchH-------------HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 47899999932 344566778999997777765443221 1 11122223333334678999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 118 ~~~ 120 (163)
T cd01860 118 LES 120 (163)
T ss_pred ccc
Confidence 874
No 80
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.12 E-value=4.7e-10 Score=118.05 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=50.9
Q ss_pred CeEEEeCCCCcccCC-CCCchhHHHHHHHHHHHHhh--------------cCCeEEEEEecCCCCcccHHHHHHHHHhCC
Q 045702 152 NMTLVDLPGITKVPV-GDQPTDIEARIRKMIMAYIR--------------QENCIILAVSPANSDLATSDALQMAREADP 216 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~-~~~~~~~~~~~~~~~~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 216 (728)
.|+||||||+..... ...-..+...+.+....|+. +.+++++++.+....+...| +.+++.+..
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l~~ 142 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRLSK 142 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHHhc
Confidence 699999999975421 11122333333333334332 23445555555555666666 788888875
Q ss_pred CCCceEEeeccCCCCCCC
Q 045702 217 TGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 217 ~~~rti~VltK~D~~~~~ 234 (728)
+.++|+|+||+|++...
T Consensus 143 -~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 143 -RVNIIPVIAKADTLTPE 159 (276)
T ss_pred -cCCEEEEEECCCcCCHH
Confidence 78999999999998644
No 81
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-09 Score=121.57 Aligned_cols=166 Identities=19% Similarity=0.236 Sum_probs=109.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCC-cccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGK-RFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~ 123 (728)
--.|++.|+.|+||||++||++-.++||.|.|+||.|-.++.=.. .-.++...+|. ...|...+...+.
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vegad----------G~e~vl~~~~s~ek~d~~ti~~~~h 178 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGAD----------GAEAVLATEGSEEKIDMKTINQLAH 178 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccC----------CcceeeccCCCcccccHHHHhHHHH
Confidence 346999999999999999999999999999999999998873111 11112222331 1123332322221
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCC------cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEec
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNV------LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSP 197 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~------~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~ 197 (728)
..... +. -....-+.|+.|+. -++.+||.||+.-.+ ....-+.++..+.| ++++|+.
T Consensus 179 aL~~~-----~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----------e~tswid~~cldaD-VfVlV~N 241 (749)
T KOG0448|consen 179 ALKPD-----KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----------ELTSWIDSFCLDAD-VFVLVVN 241 (749)
T ss_pred hcCcc-----cc-cCcceEEEEEecCccchhhhccceeccCCCCCCch----------hhhHHHHHHhhcCC-eEEEEec
Confidence 11000 00 11223455666554 189999999997432 34456778889999 6666666
Q ss_pred CCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHH
Q 045702 198 ANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNAC 238 (728)
Q Consensus 198 a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~ 238 (728)
|...++.++ .+++..+......++++.||+|......+..
T Consensus 242 aEntlt~se-k~Ff~~vs~~KpniFIlnnkwDasase~ec~ 281 (749)
T KOG0448|consen 242 AENTLTLSE-KQFFHKVSEEKPNIFILNNKWDASASEPECK 281 (749)
T ss_pred CccHhHHHH-HHHHHHhhccCCcEEEEechhhhhcccHHHH
Confidence 666666666 8888888887677778888999998777665
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.11 E-value=4.3e-10 Score=108.26 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=44.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHH---hCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMARE---ADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~---~d~~~~rti~VltK~ 228 (728)
.+.+||+||.. ....+...++..+|++|+++...+ ..+-.....+... ....+.|+++|+||+
T Consensus 50 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQE-------------RFRSITSSYYRGAVGALLVYDITN-RESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCChH-------------HHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 47899999933 344677888999997777765443 2222222223232 232478999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 116 D~~~ 119 (164)
T smart00175 116 DLED 119 (164)
T ss_pred hccc
Confidence 9875
No 83
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.11 E-value=1.1e-09 Score=104.32 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||.. ..+.+...|+..++++++++. ++....-......+..+ ...+.|.++|+||
T Consensus 45 ~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 110 (159)
T cd04159 45 TLKVWDLGGQP-------------RFRSMWERYCRGVNAIVYVVD-AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNK 110 (159)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 48999999954 345677889999996665554 43221111111222222 2246799999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 111 ~D~~~~~ 117 (159)
T cd04159 111 NDLPGAL 117 (159)
T ss_pred ccccCCc
Confidence 9987653
No 84
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.11 E-value=1.5e-09 Score=106.67 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh---C-CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA---D-PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~---d-~~~~rti~VltK 227 (728)
.+.||||||- +....+...|++.++++|+++...+ .-+-.+...++..+ . ..+.++++|.||
T Consensus 64 ~~~i~Dt~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 64 HLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLIFDLTN-EQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEeCCCh-------------HHHHHHHHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 4789999992 2566778889999997666665432 11111112222222 1 235789999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 130 ~Dl~~~ 135 (180)
T cd04127 130 ADLEDQ 135 (180)
T ss_pred ccchhc
Confidence 999753
No 85
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.10 E-value=4.4e-10 Score=113.89 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=81.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC--CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC--DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~--~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+|+|+|..+|||||++|+|+|.+.++.+. ..||+......-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 69999999999999999999998777653 245544432210
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
.+.+ ..+++|||||+.+... .+..+...+.+.+......+++ +|+|++.. .++.
T Consensus 45 -------------------~~~g---~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~~~~~g~ha-~llVi~~~-r~t~ 98 (212)
T PF04548_consen 45 -------------------EVDG---RQVTVIDTPGLFDSDG--SDEEIIREIKRCLSLCSPGPHA-FLLVIPLG-RFTE 98 (212)
T ss_dssp -------------------EETT---EEEEEEE--SSEETTE--EHHHHHHHHHHHHHHTTT-ESE-EEEEEETT-B-SH
T ss_pred -------------------eecc---eEEEEEeCCCCCCCcc--cHHHHHHHHHHHHHhccCCCeE-EEEEEecC-cchH
Confidence 0111 1489999999976532 1222333333333333445774 55556665 6655
Q ss_pred HH--HHHHHHHh-CC-CCCceEEeeccCCCCCCCccHHHhHc--------CCCcccCCceeEeecC
Q 045702 205 SD--ALQMAREA-DP-TGSRTIGVITKLDIMDRGTNACNFLL--------GKVVPLRLGYVGVVNR 258 (728)
Q Consensus 205 ~~--~l~l~~~~-d~-~~~rti~VltK~D~~~~~~~~~~~l~--------~~~~~l~~g~~~v~~r 258 (728)
.+ +++.+..+ .+ .-..+|+|+|..|...... ..++++ .-....+-.|+.+.|+
T Consensus 99 ~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 99 EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred HHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 44 33344433 22 2368999999999987765 223333 2222345556666666
No 86
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.10 E-value=7e-10 Score=108.76 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.||||||.. ....++..|+..+|++|+++. ++.....++ +..+..+...+.++++|+||+|+.
T Consensus 68 ~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~D-~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 68 LLNLIDTPGHV-------------DFSYEVSRSLAACEGALLLVD-ATQGVEAQT-LANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEEECCCCh-------------hhHHHHHHHHHhcCeEEEEEE-CCCCccHhh-HHHHHHHHHcCCCEEEEEECCCCC
Confidence 58899999975 234567788999996666554 443333222 333333334578999999999986
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
+
T Consensus 133 ~ 133 (179)
T cd01890 133 S 133 (179)
T ss_pred c
Confidence 4
No 87
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.10 E-value=1.1e-09 Score=105.60 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||. +....+...++..+|++|+++...+ ...-. .++..+.... .+.+.++|+||+
T Consensus 53 ~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 117 (164)
T cd04101 53 ELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILVYDVSN-KASFENCSRWVNKVRTAS-KHMPGVLVGNKM 117 (164)
T ss_pred EEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 5899999993 2455778889999996666664332 21111 1222233333 358999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 118 Dl~~~ 122 (164)
T cd04101 118 DLADK 122 (164)
T ss_pred ccccc
Confidence 99654
No 88
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.10 E-value=5.7e-10 Score=107.66 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HH-HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---AL-QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l-~l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||.. .+..+...|+...+++|+++...+.. +-.. +. .+.+.......|+++|.||
T Consensus 49 ~l~i~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pii~v~nK 114 (164)
T smart00173 49 LLDILDTAGQE-------------EFSAMRDQYMRTGEGFLLVYSITDRQ-SFEEIKKFREQILRVKDRDDVPIVLVGNK 114 (164)
T ss_pred EEEEEECCCcc-------------cchHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 47899999954 23356677889999666666543211 1111 11 1222233346799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (164)
T smart00173 115 CDLESE 120 (164)
T ss_pred cccccc
Confidence 999753
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.09 E-value=7.2e-10 Score=106.66 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC--CCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD--PTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~D 229 (728)
.+.|+||||.. ....+...|++.++++++++...+.+ .-.....+...+. ..+.|+++|+||+|
T Consensus 52 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~l~~~~~~~~~~~~~~p~iiv~nK~D 117 (162)
T cd04106 52 RLMLWDTAGQE-------------EFDAITKAYYRGAQACILVFSTTDRE-SFEAIESWKEKVEAECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEeeCCchH-------------HHHHhHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChh
Confidence 58999999932 45567788999999766666543322 1111122222221 13689999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+....
T Consensus 118 l~~~~ 122 (162)
T cd04106 118 LLDQA 122 (162)
T ss_pred ccccc
Confidence 97643
No 90
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.09 E-value=1.7e-09 Score=107.95 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=46.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.||||||.. .+..++..|++.+|++|+++. +..+...+. ..+++.+...+.|.++|+||+|+.
T Consensus 66 ~~~l~DtpG~~-------------~~~~~~~~~~~~~d~~ilV~d-~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 66 KINIVDTPGHA-------------DFGGEVERVLSMVDGVLLLVD-ASEGPMPQT-RFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHHHhcCEEEEEEE-CCCCccHHH-HHHHHHHHHcCCCEEEEEECCCCC
Confidence 68999999964 345577889999996666555 443332222 334454444578999999999997
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
..
T Consensus 131 ~~ 132 (194)
T cd01891 131 DA 132 (194)
T ss_pred CC
Confidence 54
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.09 E-value=7.3e-10 Score=107.64 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhC---CCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREAD---PTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d---~~~~rti~V 224 (728)
.+.+||+||.. ....+...|++.++++|+++...+. -.-.... .+.+... +.+.|+++|
T Consensus 50 ~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 115 (172)
T cd01862 50 TLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTNP-KSFESLDSWRDEFLIQASPSDPENFPFVVL 115 (172)
T ss_pred EEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCccCCCCceEEEE
Confidence 47899999943 3345677899999977777654322 1111111 1233333 347899999
Q ss_pred eccCCCCC
Q 045702 225 ITKLDIMD 232 (728)
Q Consensus 225 ltK~D~~~ 232 (728)
+||+|+..
T Consensus 116 ~nK~Dl~~ 123 (172)
T cd01862 116 GNKIDLEE 123 (172)
T ss_pred EECccccc
Confidence 99999985
No 92
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.09 E-value=4.8e-10 Score=109.24 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.4
Q ss_pred EECCCCCCHHHHHHHHhCCCC
Q 045702 50 VVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 50 VvG~~ssGKSSllnaL~g~~~ 70 (728)
++|.+|||||||+|+|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999874
No 93
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.09 E-value=1.5e-09 Score=113.79 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=78.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
..|+++|..++|||||+|+|+... |...+... +.-.. ..|.+..|+......
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g~-v~~~~-----------------~~~~t~~D~~~~e~~---- 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAGA-VKARK-----------------SRKHATSDWMEIEKQ---- 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCce-ecccc-----------------cCCCccCCCcHHHHh----
Confidence 469999999999999999998543 11111111 10000 012223343322211
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
.++|-..-.+.+...+ ..+.||||||.. .+...+..+++.+|++|+++ ++..++..+
T Consensus 55 --------rg~si~~~~~~~~~~~-~~i~liDTPG~~-------------df~~~~~~~l~~aD~~IlVv-da~~g~~~~ 111 (267)
T cd04169 55 --------RGISVTSSVMQFEYRD-CVINLLDTPGHE-------------DFSEDTYRTLTAVDSAVMVI-DAAKGVEPQ 111 (267)
T ss_pred --------CCCCeEEEEEEEeeCC-EEEEEEECCCch-------------HHHHHHHHHHHHCCEEEEEE-ECCCCccHH
Confidence 2333222223333332 368999999965 12234667888999666655 555554433
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
. ..+++.....+.|+++|+||+|+....
T Consensus 112 ~-~~i~~~~~~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 112 T-RKLFEVCRLRGIPIITFINKLDREGRD 139 (267)
T ss_pred H-HHHHHHHHhcCCCEEEEEECCccCCCC
Confidence 3 455555555678999999999987654
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.09 E-value=8.4e-10 Score=105.81 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=43.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++|+||.. ....+...|+..++++++++...+.+ .-+. ++..++...+...++++|+||+
T Consensus 50 ~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 115 (162)
T cd04123 50 DLAIWDTAGQE-------------RYHALGPIYYRDADGAILVYDITDAD-SFQKVKKWIKELKQMRGNNISLVIVGNKI 115 (162)
T ss_pred EEEEEECCchH-------------HHHHhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 47899999932 34456677888999666666543322 1112 2223344444468999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 116 D~~~~ 120 (162)
T cd04123 116 DLERQ 120 (162)
T ss_pred ccccc
Confidence 99753
No 95
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.08 E-value=7.3e-10 Score=106.22 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=44.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH-HHH-HHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS-DAL-QMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l-~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. .+..+...|+..++++++++...+.. +... .+. .+.+.....+.|+++|+||+
T Consensus 50 ~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 116 (162)
T cd04138 50 LLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKC 116 (162)
T ss_pred EEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 36889999943 34567778999999777776543321 1111 111 22333334578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04138 117 DLAAR 121 (162)
T ss_pred ccccc
Confidence 99753
No 96
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.07 E-value=1e-09 Score=106.18 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=46.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.|+||||.. ....+...++..+|++++++...+.. +. -..++..+....+.+.+.++|+||+|
T Consensus 53 ~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 53 KLQIWDTAGQE-------------RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEECCChH-------------HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 57999999932 45567788999999777666544321 11 11234444444455788999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+...
T Consensus 120 l~~~ 123 (165)
T cd01864 120 LEEQ 123 (165)
T ss_pred cccc
Confidence 9754
No 97
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.07 E-value=8.7e-10 Score=105.43 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
++.||||||+....... .-..+...|+. ..+++|+++ ++... . +. ..+..++...+.+.++|+||+|
T Consensus 44 ~~~liDtpG~~~~~~~~-------~~~~~~~~~~~~~~~d~vi~v~-d~~~~-~-~~-~~~~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS-------EDEKVARDFLLGEKPDLIVNVV-DATNL-E-RN-LYLTLQLLELGLPVVVALNMID 112 (158)
T ss_pred EEEEEECCCccccCCCC-------hhHHHHHHHhcCCCCcEEEEEe-eCCcc-h-hH-HHHHHHHHHcCCCEEEEEehhh
Confidence 58999999986432110 11234555665 788555555 44432 1 11 3344444445789999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 113 l~~~ 116 (158)
T cd01879 113 EAEK 116 (158)
T ss_pred hccc
Confidence 9764
No 98
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.07 E-value=1.4e-09 Score=112.00 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=47.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||... +...+..+++..|++|+++. +..+...+. ..+++.+...+.|.++|+||+|+.
T Consensus 65 ~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVvd-~~~g~~~~~-~~~~~~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 65 KVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVIS-AVEGVQAQT-RILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred EEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEEe-CCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccc
Confidence 689999999762 22346778899996666554 444544332 455555555688999999999998
Q ss_pred CCC
Q 045702 232 DRG 234 (728)
Q Consensus 232 ~~~ 234 (728)
...
T Consensus 130 ~a~ 132 (237)
T cd04168 130 GAD 132 (237)
T ss_pred CCC
Confidence 543
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.07 E-value=8.9e-10 Score=105.94 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHH-HHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDAL-QMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l-~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. .+..+...+++..+++++++...+.. +. ...+. .+.+.......|.++|+||+
T Consensus 49 ~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 49 QLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 47899999954 33456677899999777777543221 00 11222 23333234579999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 116 D~~~ 119 (164)
T cd04139 116 DLED 119 (164)
T ss_pred cccc
Confidence 9976
No 100
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.06 E-value=1.1e-09 Score=105.93 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=43.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHH-HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQ-MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~-l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||.. ....+...|++..+++|+++...+.. .-.+ +.. +.+.....+.|+++|.||
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (164)
T cd04175 50 MLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNK 115 (164)
T ss_pred EEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 47899999954 34456677999999877777543211 1111 122 222223457899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 116 ~Dl~~~ 121 (164)
T cd04175 116 CDLEDE 121 (164)
T ss_pred Ccchhc
Confidence 999753
No 101
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.06 E-value=9.8e-10 Score=111.05 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=47.8
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMARE 213 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~ 213 (728)
.+++.+.....+... ...+.||||||.. .... .+..++..+|.+| +|+++..++..++ ...+..
T Consensus 61 rg~T~~~~~~~~~~~-~~~~~liDTpG~~------------~~~~-~~~~~~~~ad~~l-lVvD~~~~~~~~~-~~~~~~ 124 (208)
T cd04166 61 QGITIDVAYRYFSTP-KRKFIIADTPGHE------------QYTR-NMVTGASTADLAI-LLVDARKGVLEQT-RRHSYI 124 (208)
T ss_pred CCcCeecceeEEecC-CceEEEEECCcHH------------HHHH-HHHHhhhhCCEEE-EEEECCCCccHhH-HHHHHH
Confidence 345555544444443 3368999999953 1222 2445788999555 4455555543333 222222
Q ss_pred hCCCC-CceEEeeccCCCCCC
Q 045702 214 ADPTG-SRTIGVITKLDIMDR 233 (728)
Q Consensus 214 ~d~~~-~rti~VltK~D~~~~ 233 (728)
+...+ .++|+|+||+|+...
T Consensus 125 ~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 125 LSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HHHcCCCcEEEEEEchhcccC
Confidence 22223 457889999999754
No 102
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.05 E-value=1e-09 Score=106.37 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc--cHHHHHHHHHhC---CCCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA--TSDALQMAREAD---PTGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d---~~~~rti~Vlt 226 (728)
.+.++||||... ...+...|+..++++|+++...+...- -..+...++.+. ....|+++|.|
T Consensus 50 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 50 TLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 578999999652 234556788889977766654332211 112223344432 24689999999
Q ss_pred cCCCCC
Q 045702 227 KLDIMD 232 (728)
Q Consensus 227 K~D~~~ 232 (728)
|+|+..
T Consensus 117 K~Dl~~ 122 (165)
T cd04140 117 KCDESH 122 (165)
T ss_pred Cccccc
Confidence 999965
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.05 E-value=1.4e-09 Score=105.54 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.++|+||.. ....+...|+..++++++++...+.+- .-..++..++.+...+.+.++|.||+|
T Consensus 57 ~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 57 KLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 47899999943 344556778999997666665432211 011233334555556788999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 124 ~~~~ 127 (169)
T cd04114 124 LAER 127 (169)
T ss_pred cccc
Confidence 8653
No 104
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.05 E-value=8.5e-10 Score=110.84 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=47.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||-. ..+.+...|++.++++||++...+.+- . -..++..++.....+.++|+|.||+|
T Consensus 50 ~l~iwDtaGqe-------------~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 50 RLQIWDTAGQE-------------RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEeCCCch-------------hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 58999999943 566788899999998777775443221 1 11234455555556789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 117 L~~ 119 (202)
T cd04120 117 CET 119 (202)
T ss_pred ccc
Confidence 964
No 105
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.04 E-value=3.3e-10 Score=121.91 Aligned_cols=133 Identities=27% Similarity=0.412 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCC-----CCcccCCcccccceEEEeeeCCCCCC
Q 045702 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRD-----FLPRGCDICTRRPLALMLVNRPRNPG 95 (728)
Q Consensus 21 ~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~-----~lP~~~~~~Tr~p~~i~l~~~~~~~~ 95 (728)
.+-....++++.+..+ . -..-.|+|+|+.|+|||||||||-|.. ..|+|.--+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~-~----~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~------------- 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDI-D----NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP------------- 77 (376)
T ss_dssp -HHHHHHHHHHHHHHH-H----H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS--------------
T ss_pred CHHHHHHHHHHHHHHh-h----cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC-------------
Confidence 3455666677766655 1 112279999999999999999998853 1222221222222
Q ss_pred CCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHH
Q 045702 96 DDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEA 175 (728)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~ 175 (728)
-.+..|..|+++|||+||+.... .+ ...
T Consensus 78 -----------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~---f~--~~~ 105 (376)
T PF05049_consen 78 -----------------------------------------------TPYPHPKFPNVTLWDLPGIGTPN---FP--PEE 105 (376)
T ss_dssp -----------------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------HHH
T ss_pred -----------------------------------------------eeCCCCCCCCCeEEeCCCCCCCC---CC--HHH
Confidence 23456778899999999986431 11 111
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
...++ -+..-|. ++++.+ .-+...+ ..+++.+...|++..+|-||+|.
T Consensus 106 Yl~~~---~~~~yD~-fiii~s--~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 106 YLKEV---KFYRYDF-FIIISS--ERFTEND-VQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHT---TGGG-SE-EEEEES--SS--HHH-HHHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHc---cccccCE-EEEEeC--CCCchhh-HHHHHHHHHcCCcEEEEEecccc
Confidence 12111 1334464 334433 3455555 78999999999999999999996
No 106
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.04 E-value=2.5e-09 Score=102.73 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc--cHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA--TSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~--~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...|+..++++|+++...+.. +. ......+++.....+.|+++|+||+
T Consensus 44 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 44 KFQVWDLGGQT-------------SIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCC
Confidence 47899999964 34567788999999666666433211 11 1111222232222468999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 111 Dl~~~ 115 (158)
T cd04151 111 DMPGA 115 (158)
T ss_pred CCCCC
Confidence 99754
No 107
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.04 E-value=1.2e-09 Score=102.85 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|++||++++|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998764
No 108
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.03 E-value=3.4e-09 Score=102.55 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||.. .+..+...++..++++|+++...+.+ .-......+..+ ...+.|+++|+||
T Consensus 51 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 51 RLKFWDLGGQE-------------SLRSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred EEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEEEc
Confidence 68999999964 34456778899999666666543321 111222222222 2347899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 117 ~D~~~~ 122 (167)
T cd04160 117 QDLPDA 122 (167)
T ss_pred cccccC
Confidence 998664
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.03 E-value=1.7e-09 Score=103.46 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH---HHHHHhCC-CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL---QMAREADP-TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l---~l~~~~d~-~~~rti~VltK 227 (728)
.+.++|+||.. ....+...+++..+.+|+++...+.+ .-.+.. ..+..... .+.++++|+||
T Consensus 48 ~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 113 (160)
T cd00876 48 TLDILDTAGQE-------------EFSAMRDLYIRQGDGFILVYSITDRE-SFEEIKGYREQILRVKDDEDIPIVLVGNK 113 (160)
T ss_pred EEEEEECCChH-------------HHHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 47899999954 24456677888999777766544322 111112 22222222 57999999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 114 ~D~~~ 118 (160)
T cd00876 114 CDLEN 118 (160)
T ss_pred Ccccc
Confidence 99986
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.03 E-value=3.1e-09 Score=103.90 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH----HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ----MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||.. ..+.+...|+..++++|+++...+.. .-.+... +.+.....+.++++|+||
T Consensus 59 ~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (173)
T cd04154 59 KLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVVDSSDRL-RLDDCKRELKELLQEERLAGATLLILANK 124 (173)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 57999999943 34556788999999776666544321 1111112 222222246899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 125 ~Dl~~~ 130 (173)
T cd04154 125 QDLPGA 130 (173)
T ss_pred cccccC
Confidence 999754
No 111
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.02 E-value=1.5e-09 Score=113.81 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=55.4
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
++|.+.....+...+ ..++||||||..+ +...+.+++...|++|+ |+++..++..++ ..+++.+
T Consensus 49 giti~~~~~~~~~~~-~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ail-VVDa~~g~~~~t-~~~~~~~ 112 (270)
T cd01886 49 GITIQSAATTCFWKD-HRINIIDTPGHVD-------------FTIEVERSLRVLDGAVA-VFDAVAGVEPQT-ETVWRQA 112 (270)
T ss_pred CcCeeccEEEEEECC-EEEEEEECCCcHH-------------HHHHHHHHHHHcCEEEE-EEECCCCCCHHH-HHHHHHH
Confidence 444444334443333 3689999999652 22346788999995555 556666665544 5666766
Q ss_pred CCCCCceEEeeccCCCCCC
Q 045702 215 DPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 215 d~~~~rti~VltK~D~~~~ 233 (728)
...+.|.++|+||+|+...
T Consensus 113 ~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 113 DRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHcCCCEEEEEECCCCCCC
Confidence 6678899999999999753
No 112
>PTZ00369 Ras-like protein; Provisional
Probab=99.02 E-value=1.8e-09 Score=107.23 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...|++.++++|+++...+.+. . -..+...+... ...+.|+++|.||+
T Consensus 54 ~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 54 LLDILDTAGQE-------------EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEeCCCCc-------------cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47899999954 234566779999997777765543321 0 11112222222 23467999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 121 Dl~~ 124 (189)
T PTZ00369 121 DLDS 124 (189)
T ss_pred cccc
Confidence 9854
No 113
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.02 E-value=1.2e-09 Score=105.34 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=42.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.+.|+||||.. .+..+...|+..++++|+++...+.. +. -..+...+... ...+.|+++|.||+
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTE-------------QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcc-------------cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 47899999953 23346677899999777776544321 11 11112222222 33578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 117 Dl~~ 120 (163)
T cd04176 117 DLES 120 (163)
T ss_pred cchh
Confidence 9864
No 114
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.02 E-value=2.6e-09 Score=108.52 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCC---CCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADP---TGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~---~~~rti~Vlt 226 (728)
.+.|+||||.. ....+...|+..+|++|+++...+... . -..+...++.... ...++++|.|
T Consensus 51 ~~~i~Dt~G~~-------------~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 51 TLQVWDIGGQS-------------IGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEE
Confidence 57899999932 445677889999997777765443211 1 0112333433322 2457899999
Q ss_pred cCCCCC
Q 045702 227 KLDIMD 232 (728)
Q Consensus 227 K~D~~~ 232 (728)
|+|+..
T Consensus 118 K~DL~~ 123 (215)
T cd04109 118 KTDLEH 123 (215)
T ss_pred Cccccc
Confidence 999974
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.02 E-value=4.2e-09 Score=101.14 Aligned_cols=67 Identities=13% Similarity=0.308 Sum_probs=42.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|+..++++|+++...+ ...-..+...+.++ ...+.|+++|+||
T Consensus 45 ~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv~v~D~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (160)
T cd04156 45 SLTVWDVGGQE-------------KMRTVWKCYLENTDGLVYVVDSSD-EARLDESQKELKHILKNEHIKGVPVVLLANK 110 (160)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEEECCc-HHHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 58999999954 344566778999996666654433 22112222222221 1247899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 111 ~Dl~~ 115 (160)
T cd04156 111 QDLPG 115 (160)
T ss_pred ccccc
Confidence 99964
No 116
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.01 E-value=2.8e-09 Score=105.56 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
-++|+++|.++||||||+++|+|..+.. ..+|..|+...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---~~~t~~~~~~~-------------------------------------- 55 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---HQPTQHPTSEE-------------------------------------- 55 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccccceEE--------------------------------------
Confidence 3789999999999999999999876521 01222222110
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
+.+. ...+.++||||.. ..+.+...|+..++++|+++..++.+ .-
T Consensus 56 ------------------~~~~---~~~~~~~D~~G~~-------------~~~~~~~~~~~~ad~ii~vvD~~~~~-~~ 100 (184)
T smart00178 56 ------------------LAIG---NIKFTTFDLGGHQ-------------QARRLWKDYFPEVNGIVYLVDAYDKE-RF 100 (184)
T ss_pred ------------------EEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCcHH-HH
Confidence 0110 1247899999964 33456778999999777776554322 11
Q ss_pred HHHHHHHHHh----CCCCCceEEeeccCCCCC
Q 045702 205 SDALQMAREA----DPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 205 ~~~l~l~~~~----d~~~~rti~VltK~D~~~ 232 (728)
..+...+.++ ...+.|+++|+||+|+..
T Consensus 101 ~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 101 AESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 1112222222 224789999999999864
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.01 E-value=4.4e-09 Score=100.84 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=44.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||.. ....+...++...+++++++...+.+ .-..+. .+.+.....+.++++|+||
T Consensus 44 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 44 SFTVWDVGGQD-------------KIRPLWKHYYENTNGIIFVVDSSDRE-RIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred EEEEEECCCCh-------------hhHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 58999999954 23456677889999666665544321 111112 2223333457899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+....
T Consensus 110 ~D~~~~~ 116 (158)
T cd00878 110 QDLPGAL 116 (158)
T ss_pred cCCcccc
Confidence 9997644
No 118
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=2.5e-09 Score=106.07 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||.. ....+...+++.++++|+++...+.+ +-.. ++..++...+...+.++|.||+
T Consensus 50 ~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d~~~~~-s~~~i~~~~~~i~~~~~~~~~~ivv~nK~ 115 (188)
T cd04125 50 KLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYDVTDQE-SFENLKFWINEINRYARENVIKVIVANKS 115 (188)
T ss_pred EEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 47899999943 34457788999999777777544322 1111 2233334444567899999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 116 Dl~~ 119 (188)
T cd04125 116 DLVN 119 (188)
T ss_pred CCcc
Confidence 9974
No 119
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.01 E-value=3.5e-09 Score=101.81 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH---HHHHHH-hCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA---LQMARE-ADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~-~d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...+++.+|++|+++...+ .-+-... +..++. ....+.+.++|+||
T Consensus 50 ~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK 115 (161)
T cd01863 50 KLAIWDTAGQE-------------RFRTLTSSYYRGAQGVILVYDVTR-RDTFTNLETWLNELETYSTNNDIVKMLVGNK 115 (161)
T ss_pred EEEEEECCCch-------------hhhhhhHHHhCCCCEEEEEEECCC-HHHHHhHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 58999999943 334556778889996666665332 2121222 222222 24457889999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 116 ~D~~~~ 121 (161)
T cd01863 116 IDKENR 121 (161)
T ss_pred Cccccc
Confidence 999843
No 120
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.00 E-value=3e-09 Score=120.19 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=63.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCC-eEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQEN-CIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~-~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
.+++|||||+.+..... .-+.++++|+.+.+ .+|+.|+||.+--.| +.+.-++-..|.|+|+++|++|.
T Consensus 51 ~i~ivDLPG~YSL~~~S-------~DE~Var~~ll~~~~D~ivnVvDAtnLeRn---LyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 51 EIEIVDLPGTYSLTAYS-------EDEKVARDFLLEGKPDLIVNVVDATNLERN---LYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred eEEEEeCCCcCCCCCCC-------chHHHHHHHHhcCCCCEEEEEcccchHHHH---HHHHHHHHHcCCCeEEEeccHhh
Confidence 37999999998764321 12356788887432 377778777544333 66667777789999999999999
Q ss_pred CCCCccHH--HhHcCCCcccCCceeEeecCChhhh
Q 045702 231 MDRGTNAC--NFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 231 ~~~~~~~~--~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
..+..... +.++ ..|+.+.+.++....+++
T Consensus 121 A~~~Gi~ID~~~L~---~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 121 AKKRGIRIDIEKLS---KLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred HHhcCCcccHHHHH---HHhCCCEEEEEeecCCCH
Confidence 86532211 2221 235566666666555543
No 121
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.00 E-value=2.9e-09 Score=105.94 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhC---CCCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREAD---PTGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d---~~~~rti~Vlt 226 (728)
.+.||||||.. ....+...|++.++++|+++...+... . -..++..+..+. +...|+|+|.|
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgN 114 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGN 114 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEE
Confidence 47999999943 344567789999997776665433211 0 112223333332 24679999999
Q ss_pred cCCCCC
Q 045702 227 KLDIMD 232 (728)
Q Consensus 227 K~D~~~ 232 (728)
|+|+.+
T Consensus 115 K~Dl~~ 120 (190)
T cd04144 115 KCDKVY 120 (190)
T ss_pred Chhccc
Confidence 999964
No 122
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.00 E-value=5.4e-09 Score=100.88 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
+|+++|.+++|||||+|+|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
No 123
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.99 E-value=2.6e-09 Score=103.72 Aligned_cols=68 Identities=26% Similarity=0.212 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||... .......++..++.++|++. .+..-.-. .+...++...+ +.++++|+||
T Consensus 48 ~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv~d-~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK 112 (166)
T cd01893 48 PTTIVDTSSRPQ-------------DRANLAAEIRKANVICLVYS-VDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNK 112 (166)
T ss_pred EEEEEeCCCchh-------------hhHHHhhhcccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 478999999642 22345667889996666654 43222221 13344555444 7899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 113 ~Dl~~~~ 119 (166)
T cd01893 113 SDLRDGS 119 (166)
T ss_pred hhccccc
Confidence 9997643
No 124
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.99 E-value=3.1e-09 Score=104.01 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=45.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-cc-HHHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-AT-SDALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~-~~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.+.|+||||.. ....+...|+..++++|+++...+..- .+ .++...+... ...+.|+++|.||+
T Consensus 51 ~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 51 LLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 58999999954 455678889999998877776543221 11 1122334443 23468999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 118 Dl~~ 121 (172)
T cd04141 118 DLES 121 (172)
T ss_pred hhhh
Confidence 9864
No 125
>PLN03108 Rab family protein; Provisional
Probab=98.99 E-value=3.1e-09 Score=107.53 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH--HHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS--DALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||.. ....+...|+..++++|+++...+...-.. .++..+........++++|.||+|
T Consensus 56 ~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~D 122 (210)
T PLN03108 56 KLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122 (210)
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 47899999943 345567788999997777775543221111 122223333344689999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+...
T Consensus 123 l~~~ 126 (210)
T PLN03108 123 LAHR 126 (210)
T ss_pred Cccc
Confidence 9753
No 126
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.99 E-value=4.1e-09 Score=110.81 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||.. .+...+..++..+|.+|+ |+++..+...+. ..+++.+...+.|.++|+||+|+
T Consensus 64 ~~i~liDtPG~~-------------~f~~~~~~~l~~aD~~i~-Vvd~~~g~~~~~-~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 64 HKINLIDTPGYA-------------DFVGETRAALRAADAALV-VVSAQSGVEVGT-EKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred EEEEEEECcCHH-------------HHHHHHHHHHHHCCEEEE-EEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECCcc
Confidence 368999999965 223456778889995555 445554443332 45556666668899999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 129 ~~~~ 132 (268)
T cd04170 129 ERAD 132 (268)
T ss_pred CCCC
Confidence 8653
No 127
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.99 E-value=2.8e-09 Score=106.43 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=51.1
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
+++.+...+.+.. ....++||||||+. .++. .+...+..+|++++ |+++..++..++ ..+++.+
T Consensus 50 g~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~~~~-~~~~~~~~~D~~il-Vvda~~g~~~~~-~~~~~~~ 113 (195)
T cd01884 50 GITINTAHVEYET-ANRHYAHVDCPGHA------------DYIK-NMITGAAQMDGAIL-VVSATDGPMPQT-REHLLLA 113 (195)
T ss_pred CccEEeeeeEecC-CCeEEEEEECcCHH------------HHHH-HHHHHhhhCCEEEE-EEECCCCCcHHH-HHHHHHH
Confidence 3343333333332 23468999999964 1333 33556778995554 555666665554 5566666
Q ss_pred CCCCCc-eEEeeccCCCCC
Q 045702 215 DPTGSR-TIGVITKLDIMD 232 (728)
Q Consensus 215 d~~~~r-ti~VltK~D~~~ 232 (728)
...+.+ .|+|+||+|++.
T Consensus 114 ~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 114 RQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHcCCCcEEEEEeCCCCCC
Confidence 666665 789999999974
No 128
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.99 E-value=3.5e-09 Score=103.44 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc-HHHHHH-HHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT-SDALQM-AREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l-~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++||++...+.+ +.. ..++.. .+...+...++|+|.||+
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~ 116 (170)
T cd04108 50 SLQLWDTAGQE-------------RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKK 116 (170)
T ss_pred EEEEEeCCChH-------------HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEECh
Confidence 58999999943 44567788999999666666443311 111 112222 223344446689999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 117 Dl~~~ 121 (170)
T cd04108 117 DLSSP 121 (170)
T ss_pred hcCcc
Confidence 98643
No 129
>PLN03118 Rab family protein; Provisional
Probab=98.98 E-value=2.8e-09 Score=107.95 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-ccH-H-HHHHHHHhC-CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-ATS-D-ALQMAREAD-PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~~-~-~l~l~~~~d-~~~~rti~VltK 227 (728)
.+.|+||||.. ....+...|++..+++||++...+.+- .+- + +...+.... ..+.+.++|.||
T Consensus 63 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK 129 (211)
T PLN03118 63 KLTIWDTAGQE-------------RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129 (211)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 47899999954 344567789999997777775443211 110 0 112223232 235689999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 130 ~Dl~~~ 135 (211)
T PLN03118 130 VDRESE 135 (211)
T ss_pred cccccc
Confidence 999753
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.98 E-value=2.9e-09 Score=106.01 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=41.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...|+..++++||++...+ .-.-. .++..++...+ +.++++|+||+
T Consensus 51 ~l~i~D~~G~~-------------~~~~~~~~~~~~~d~iilv~d~~~-~~s~~~~~~~~~~i~~~~~-~~piilv~nK~ 115 (193)
T cd04118 51 TLGIWDTAGSE-------------RYEAMSRIYYRGAKAAIVCYDLTD-SSSFERAKFWVKELQNLEE-HCKIYLCGTKS 115 (193)
T ss_pred EEEEEECCCch-------------hhhhhhHhhcCCCCEEEEEEECCC-HHHHHHHHHHHHHHHhcCC-CCCEEEEEEcc
Confidence 47899999953 234556778889996666664332 21111 12233333332 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 116 Dl~~~ 120 (193)
T cd04118 116 DLIEQ 120 (193)
T ss_pred ccccc
Confidence 98653
No 131
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.98 E-value=3.8e-09 Score=104.43 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH----HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ----MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~VltK 227 (728)
.+.+|||||.. ....+...|++.++++|+++...+.+ .-.++.. +.+.....+.|+++|+||
T Consensus 53 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~-~~~~~~~~~~~i~~~~~~~~~p~iiv~NK 118 (183)
T cd04152 53 TFHFWDVGGQE-------------KLRPLWKSYTRCTDGIVFVVDSVDVE-RMEEAKTELHKITRFSENQGVPVLVLANK 118 (183)
T ss_pred EEEEEECCCcH-------------hHHHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhhhhcCCCcEEEEEEC
Confidence 58999999943 34567788999999666666533321 1111111 223333357899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 119 ~D~~~ 123 (183)
T cd04152 119 QDLPN 123 (183)
T ss_pred cCccc
Confidence 99864
No 132
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.98 E-value=4.5e-09 Score=106.48 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHH----HhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAR----EADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~----~~d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|++.++++|+++...+.. +-.++..+.. ...+...+.++|.||
T Consensus 53 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~-Sf~~l~~~~~~i~~~~~~~~~~iilvgNK 118 (211)
T cd04111 53 KLQLWDTAGQE-------------RFRSITRSYYRNSVGVLLVFDITNRE-SFEHVHDWLEEARSHIQPHRPVFILVGHK 118 (211)
T ss_pred EEEEEeCCcch-------------hHHHHHHHHhcCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Confidence 58899999943 45567788999999776666544321 1111122222 233445677899999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 119 ~Dl~~~ 124 (211)
T cd04111 119 CDLESQ 124 (211)
T ss_pred cccccc
Confidence 999763
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=1e-08 Score=99.77 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=46.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||-. ..+.+...|+..++++|+++...+.+ .-.++...+..+ ...+.|+++|+||
T Consensus 44 ~~~i~D~~G~~-------------~~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~NK 109 (167)
T cd04161 44 EVCIFDLGGGA-------------NFRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLANK 109 (167)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEEeC
Confidence 58999999943 45567889999999777776554432 222223333333 2247899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
.|+.+..
T Consensus 110 ~Dl~~~~ 116 (167)
T cd04161 110 QDKKNAL 116 (167)
T ss_pred CCCcCCC
Confidence 9997644
No 134
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.97 E-value=3.5e-09 Score=106.31 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=42.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-------CCCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-------DPTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-------d~~~~rti~V 224 (728)
.+.||||||.. .+..+...|++.++++|+++...+.+ .-..+..+...+ .....|+++|
T Consensus 51 ~l~l~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~D~t~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 51 RLQLWDIAGQE-------------RFGGMTRVYYRGAVGAIIVFDVTRPS-TFEAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred EEEEEECCCch-------------hhhhhHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 57899999952 45567788999999777777543211 111111111111 1246799999
Q ss_pred eccCCCCC
Q 045702 225 ITKLDIMD 232 (728)
Q Consensus 225 ltK~D~~~ 232 (728)
.||+|+.+
T Consensus 117 ~NK~Dl~~ 124 (201)
T cd04107 117 ANKCDLKK 124 (201)
T ss_pred EECCCccc
Confidence 99999974
No 135
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.97 E-value=3e-09 Score=102.72 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||.. ....+...|++.++++|+++...+ ...-.+ ++..++...+ ..|.++|+||+
T Consensus 50 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~ 114 (161)
T cd04124 50 LVDFWDTAGQE-------------RFQTMHASYYHKAHACILVFDVTR-KITYKNLSKWYEELREYRP-EIPCIVVANKI 114 (161)
T ss_pred EEEEEeCCCch-------------hhhhhhHHHhCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCC-CCcEEEEEECc
Confidence 47899999943 455678889999997666665432 222122 2333333332 58999999999
Q ss_pred CCC
Q 045702 229 DIM 231 (728)
Q Consensus 229 D~~ 231 (728)
|+.
T Consensus 115 Dl~ 117 (161)
T cd04124 115 DLD 117 (161)
T ss_pred cCc
Confidence 984
No 136
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.96 E-value=8.5e-09 Score=102.27 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..-++|+++|..+||||||+++|++..+.+ ..+|..|...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~------------------------------------- 56 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSE------------------------------------- 56 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceE-------------------------------------
Confidence 456789999999999999999999876411 1122222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.+.+ ..+.++||||.. ..+.+...|+..++.+|+++...+..-
T Consensus 57 -------------------~i~~~~---~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~~~~s 101 (190)
T cd00879 57 -------------------ELTIGN---IKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAADPER 101 (190)
T ss_pred -------------------EEEECC---EEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 111111 247899999943 334567789999997766665443211
Q ss_pred ccHH---HHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSD---ALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~---~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
-... ...+.+.....+.|+++|+||+|+..
T Consensus 102 ~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 102 FQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 1111 11222222234689999999999975
No 137
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.96 E-value=4e-09 Score=103.61 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH----HHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA----LQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~----l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.. .+..+...+....+++|++++..+.. .-+.+ ..+++.....+.+.|+|+||
T Consensus 50 ~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 115 (180)
T cd04137 50 HLEIVDTAGQD-------------EYSILPQKYSIGIHGYILVYSVTSRK-SFEVVKVIYDKILDMLGKESVPIVLVGNK 115 (180)
T ss_pred EEEEEECCChH-------------hhHHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 47899999954 23345567888899777776544321 11122 23333334456799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 116 ~Dl~~~ 121 (180)
T cd04137 116 SDLHTQ 121 (180)
T ss_pred hhhhhc
Confidence 999653
No 138
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.96 E-value=1.7e-09 Score=107.53 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=52.5
Q ss_pred cccceEEEEEe-cCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 136 VSEKQIGLKIS-SPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 136 ~s~~~i~l~i~-~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
++.+.-...+. ......++|+||||.. ..+ ..+...+..+|+ +++|+++..++..+. ...++.+
T Consensus 54 ~ti~~~~~~~~~~~~~~~i~~iDtPG~~------------~f~-~~~~~~~~~~D~-ailvVda~~g~~~~~-~~~l~~~ 118 (188)
T PF00009_consen 54 ITIDLSFISFEKNENNRKITLIDTPGHE------------DFI-KEMIRGLRQADI-AILVVDANDGIQPQT-EEHLKIL 118 (188)
T ss_dssp SSSSSEEEEEEBTESSEEEEEEEESSSH------------HHH-HHHHHHHTTSSE-EEEEEETTTBSTHHH-HHHHHHH
T ss_pred cccccccccccccccccceeeccccccc------------cee-ecccceeccccc-ceeeeeccccccccc-ccccccc
Confidence 33333333333 3344479999999954 233 344455889995 555556666665554 6666666
Q ss_pred CCCCCceEEeeccCCCC
Q 045702 215 DPTGSRTIGVITKLDIM 231 (728)
Q Consensus 215 d~~~~rti~VltK~D~~ 231 (728)
...+.|.|+|+||+|+.
T Consensus 119 ~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 119 RELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHTT-SEEEEEETCTSS
T ss_pred cccccceEEeeeeccch
Confidence 66678899999999998
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.96 E-value=4.6e-09 Score=102.37 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=44.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHh-CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREA-DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~-d~~~~rti~VltK 227 (728)
.+.+|||||.. .....+...|++.+|++|+++...+. -.-+. ++..++.. .....|+++|.||
T Consensus 52 ~~~i~Dt~G~~------------~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 52 KVQLWDTAGQE------------RFRKSMVQHYYRNVHAVVFVYDVTNM-ASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEeCCChH------------HHHHhhHHHhhcCCCEEEEEEECCCH-HHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 58999999943 12224677889999977777655432 12222 22222322 2346899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+....
T Consensus 119 ~Dl~~~~ 125 (170)
T cd04115 119 CDLREQI 125 (170)
T ss_pred ccchhhc
Confidence 9997543
No 140
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.96 E-value=1.1e-08 Score=99.39 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=44.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC--CCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD--PTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~D 229 (728)
.+.+|||||-. ..+.+...|++.++++|+++...+.. .-..+...+..+. ..+.|+++|.||.|
T Consensus 45 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~l~~~~~~~~~~piilv~NK~D 110 (164)
T cd04162 45 IMELLEIGGSQ-------------NLRKYWKRYLSGSQGLIFVVDSADSE-RLPLARQELHQLLQHPPDLPLVVLANKQD 110 (164)
T ss_pred EEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence 58999999954 23456778999999777666544321 1122222233331 24789999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+....
T Consensus 111 l~~~~ 115 (164)
T cd04162 111 LPAAR 115 (164)
T ss_pred CcCCC
Confidence 86543
No 141
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.95 E-value=5.4e-09 Score=106.67 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=49.4
Q ss_pred CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh-hcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 150 VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI-RQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 150 ~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi-~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
...++||||||.. ...+.+..... ..+| ++++|+++..+...++ ..++..+...+.|.++|+||+
T Consensus 83 ~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvNK~ 148 (224)
T cd04165 83 SKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVTKI 148 (224)
T ss_pred CcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEECc
Confidence 3468999999954 23344443332 2577 5556667777776655 677777777789999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 149 D~~~~~ 154 (224)
T cd04165 149 DLAPAN 154 (224)
T ss_pred cccCHH
Confidence 997643
No 142
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.95 E-value=5.7e-09 Score=104.68 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC--CCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD--PTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d--~~~~rti~VltK~D 229 (728)
.+.||||||-. ....+...|+..++++|+++..++.. .-.+...+...+. ....+.++|.||+|
T Consensus 56 ~l~l~D~~G~~-------------~~~~~~~~~~~~a~~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~piivVgNK~D 121 (199)
T cd04110 56 KLQIWDTAGQE-------------RFRTITSTYYRGTHGVIVVYDVTNGE-SFVNVKRWLQEIEQNCDDVCKVLVGNKND 121 (199)
T ss_pred EEEEEeCCCch-------------hHHHHHHHHhCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 47899999942 34567788999999777766544321 1122222222221 23578999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+...
T Consensus 122 l~~~ 125 (199)
T cd04110 122 DPER 125 (199)
T ss_pred cccc
Confidence 8753
No 143
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.95 E-value=4.3e-09 Score=102.28 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHH-hCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMARE-ADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~-~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...|+...+.+||++...+... . ...+...+.. ....+.|+++|.||+
T Consensus 50 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 116 (168)
T cd04177 50 DLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKA 116 (168)
T ss_pred EEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence 57899999954 334577778889997777665443211 1 1112222222 334578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 117 D~~~~ 121 (168)
T cd04177 117 DLEDD 121 (168)
T ss_pred hcccc
Confidence 99653
No 144
>PLN03110 Rab GTPase; Provisional
Probab=98.95 E-value=6e-09 Score=105.94 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.. .+..+...|++.++++|+++...+... . -..++..++...+.+.++++|.||+|
T Consensus 62 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 62 KAQIWDTAGQE-------------RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEECCCcH-------------HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChh
Confidence 57899999932 456678889999996666665433211 1 12334455555556789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 129 l~~ 131 (216)
T PLN03110 129 LNH 131 (216)
T ss_pred ccc
Confidence 854
No 145
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.94 E-value=1.3e-08 Score=99.21 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.|+||||.. ..+.+...|++.++++|+++...+. ..-.++...+.++- ..+.++++|.||
T Consensus 54 ~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~D~t~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK 119 (168)
T cd04149 54 KFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVVDSADR-DRIDEARQELHRIINDREMRDALLLVFANK 119 (168)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEeCCch-hhHHHHHHHHHHHhcCHhhcCCcEEEEEEC
Confidence 48999999954 3455677899999977766664432 12222233333331 235799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 120 ~Dl~~~ 125 (168)
T cd04149 120 QDLPDA 125 (168)
T ss_pred cCCccC
Confidence 999753
No 146
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.94 E-value=1.3e-08 Score=99.69 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.|+||||.. .+..+...|++.++.+|+++...+.+ .-..+...+..+ .....|+++|+||
T Consensus 60 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~V~D~s~~~-~~~~~~~~l~~~~~~~~~~~~p~viv~NK 125 (174)
T cd04153 60 RFLMWDIGGQE-------------SLRSSWNTYYTNTDAVILVIDSTDRE-RLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 48999999954 34456678899999776666543321 111112222222 2235899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 126 ~Dl~~~ 131 (174)
T cd04153 126 QDLKGA 131 (174)
T ss_pred CCCCCC
Confidence 999753
No 147
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.94 E-value=9.6e-09 Score=99.85 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=42.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH-HHHH-HHHHhC---CCCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS-DALQ-MAREAD---PTGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l~-l~~~~d---~~~~rti~Vl 225 (728)
.+.||||||- +....+...|++.++++|+++...+.+ +..- .+.. +.+... +.+.|+++|.
T Consensus 55 ~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 55 TLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred EEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 5789999993 245667888999999776666433322 1111 1111 222221 3467999999
Q ss_pred ccCCCCC
Q 045702 226 TKLDIMD 232 (728)
Q Consensus 226 tK~D~~~ 232 (728)
||+|+..
T Consensus 122 nK~Dl~~ 128 (170)
T cd04116 122 NKNDIPE 128 (170)
T ss_pred ECccccc
Confidence 9999963
No 148
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.93 E-value=6.3e-09 Score=119.76 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=79.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
+..|.|+|+|+.++|||||||+|+|..+.....+..|+-.......... . .+ ..
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~-~--------------~~-~~---------- 55 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDV-I--------------EG-IC---------- 55 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeecc-c--------------cc-cc----------
Confidence 4679999999999999999999999877544444445422111000000 0 00 00
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+ ...-..++..+ .+.++||||||.. .+..+...++..+|++|| |++++.+.
T Consensus 56 --------~------~~~~~~~v~~~-~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~~Il-VvD~~~g~ 106 (590)
T TIGR00491 56 --------G------DLLKKFKIRLK-IPGLLFIDTPGHE-------------AFTNLRKRGGALADLAIL-IVDINEGF 106 (590)
T ss_pred --------c------ccccccccccc-cCcEEEEECCCcH-------------hHHHHHHHHHhhCCEEEE-EEECCcCC
Confidence 0 00000011111 1358999999943 344566778899995555 54555444
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..++ ...++.+...+.|.|+|+||+|+.+
T Consensus 107 ~~qt-~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 107 KPQT-QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CHhH-HHHHHHHHHcCCCEEEEEECCCccc
Confidence 4433 4444444445789999999999975
No 149
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.93 E-value=2.2e-09 Score=104.22 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|+|.+++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999999886
No 150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.92 E-value=2e-08 Score=96.93 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=44.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.|+||||.. ....+...|++.++++|+++...+.+ .-.++...+..+. ....|.++|+||
T Consensus 45 ~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK 110 (159)
T cd04150 45 SFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEEEC
Confidence 48999999954 34567788999999777666554322 1122233333331 135799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 111 ~Dl~~~ 116 (159)
T cd04150 111 QDLPNA 116 (159)
T ss_pred CCCCCC
Confidence 999654
No 151
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.91 E-value=9.5e-09 Score=120.23 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=48.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||.. .+..+...++..+|.+||+| ++..+...+. ...++.+...+.|+|+|+||+|+.
T Consensus 296 kItfiDTPGhe-------------~F~~mr~rg~~~aDiaILVV-DA~dGv~~QT-~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 296 KIVFLDTPGHE-------------AFSSMRSRGANVTDIAILII-AADDGVKPQT-IEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred EEEEEECCcHH-------------HHHHHHHHHHHHCCEEEEEE-ECcCCCChhh-HHHHHHHHhcCceEEEEEECCCcc
Confidence 58999999943 45567778999999666655 5554443333 445555556678999999999997
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
..
T Consensus 361 ~~ 362 (742)
T CHL00189 361 NA 362 (742)
T ss_pred cc
Confidence 53
No 152
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.91 E-value=1.2e-08 Score=98.53 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||-. ....+...|+..++++++++...+.. +-.. ++..++...+...+.++|.||.
T Consensus 50 ~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-sf~~~~~~~~~~~~~~~~~~~iilvgnK~ 115 (161)
T cd04117 50 RIQIWDTAGQE-------------RYQTITKQYYRRAQGIFLVYDISSER-SYQHIMKWVSDVDEYAPEGVQKILIGNKA 115 (161)
T ss_pred EEEEEeCCCcH-------------hHHhhHHHHhcCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 47899999943 34456778899999777666543321 1111 2222334444568999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 116 Dl~~~ 120 (161)
T cd04117 116 DEEQK 120 (161)
T ss_pred ccccc
Confidence 99654
No 153
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.91 E-value=8.4e-09 Score=103.32 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH---H-HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL---Q-MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l---~-l~~~~d~~~~rti~VltK 227 (728)
.+.|+||||.. ....+...|+..++++|+++. +.....-.+.. . +.+.....+.++|+|+||
T Consensus 48 ~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 48 TLDILDTSGSY-------------SFPAMRKLSIQNSDAFALVYA-VDDPESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred EEEEEECCCch-------------hhhHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 57899999954 223455678999996666664 33222212211 1 222223357899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 114 ~Dl~~ 118 (198)
T cd04147 114 ADSLE 118 (198)
T ss_pred ccccc
Confidence 99975
No 154
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.91 E-value=3.7e-09 Score=102.28 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=41.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhC--CCCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREAD--PTGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d--~~~~rti~Vlt 226 (728)
.+.||||||.... .......++..+|++|+++...+ .-+-.. +...+.... ....|+|+|.|
T Consensus 48 ~~~i~D~~g~~~~------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 48 SLEILDTAGQQQA------------DTEQLERSIRWADGFVLVYSITD-RSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEECCCCccc------------ccchHHHHHHhCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4789999997631 11234567888997666664433 211111 233334433 34689999999
Q ss_pred cCCCCC
Q 045702 227 KLDIMD 232 (728)
Q Consensus 227 K~D~~~ 232 (728)
|+|+..
T Consensus 115 K~Dl~~ 120 (165)
T cd04146 115 KADLLH 120 (165)
T ss_pred CCchHH
Confidence 999854
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.90 E-value=1.2e-08 Score=117.66 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
...|.|+++|..++|||||+++|.+..+.....+..|.-...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~-------------------------------------- 126 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGA-------------------------------------- 126 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceE--------------------------------------
Confidence 356899999999999999999999877532211111111000
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
..+.+ ++...++||||||.. .+..+..++....|.+||+| +++.+.
T Consensus 127 ------------------~~v~~--~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaILVV-da~dgv 172 (587)
T TIGR00487 127 ------------------YHVEN--EDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVLVV-AADDGV 172 (587)
T ss_pred ------------------EEEEE--CCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEEEE-ECCCCC
Confidence 01111 111158999999954 23345567888899666655 555444
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+. ...++.....+.|+|+|+||+|+.+
T Consensus 173 ~~qT-~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 173 MPQT-IEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred CHhH-HHHHHHHHHcCCCEEEEEECccccc
Confidence 3333 4555555556789999999999964
No 156
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.90 E-value=2.1e-08 Score=113.27 Aligned_cols=125 Identities=15% Similarity=0.224 Sum_probs=77.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
.+|+|||.+|+||||++|+|+|...+.++. ..+|.....+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~------------------------------------- 161 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG------------------------------------- 161 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-------------------------------------
Confidence 379999999999999999999987655433 133333222110
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc--CCeEEEEEecCCC--
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ--ENCIILAVSPANS-- 200 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~--~~~iIL~V~~a~~-- 200 (728)
.+ +...+.||||||+...... ......+...+..++.. +| +||+|...+.
T Consensus 162 -------------------~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~ 215 (763)
T TIGR00993 162 -------------------LV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQT 215 (763)
T ss_pred -------------------EE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCcc
Confidence 00 0124899999999865321 12334555666777774 66 6666665432
Q ss_pred -CcccHHHHHHHHHhCC--CCCceEEeeccCCCCCC
Q 045702 201 -DLATSDALQMAREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 201 -d~~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
+.....+++.+.++-. --..+|+|+|..|...+
T Consensus 216 ~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 216 RDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred ccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2222234444444432 23789999999999964
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.89 E-value=1.7e-08 Score=100.57 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=39.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||.. ..++. ....+...|++++ |+++......++ ...+......+.+.++|+||+|+.
T Consensus 69 ~~~i~DtpG~~------------~~~~~-~~~~~~~~d~vi~-VvD~~~~~~~~~-~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 69 QITLVDCPGHA------------SLIRT-IIGGAQIIDLMLL-VVDATKGIQTQT-AECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred eEEEEECCCcH------------HHHHH-HHHHHhhCCEEEE-EEECCCCccHHH-HHHHHHHHHcCCCEEEEEECcccC
Confidence 68999999963 12222 2344566785555 445554443333 122222222367999999999997
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
..
T Consensus 134 ~~ 135 (192)
T cd01889 134 PE 135 (192)
T ss_pred CH
Confidence 53
No 158
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.89 E-value=1.2e-08 Score=120.39 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=73.8
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
...|.|+|+|..++|||||+++|.+..+.....+..|.-..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~ig--------------------------------------- 328 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIG--------------------------------------- 328 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeecc---------------------------------------
Confidence 45699999999999999999999876652111110110000
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
...+.+.+ ..++||||||.. .+..+..+++...|.+||+| +++.+.
T Consensus 329 -----------------a~~v~~~~---~~ItfiDTPGhe-------------~F~~m~~rga~~aDiaILVV-dAddGv 374 (787)
T PRK05306 329 -----------------AYQVETNG---GKITFLDTPGHE-------------AFTAMRARGAQVTDIVVLVV-AADDGV 374 (787)
T ss_pred -----------------EEEEEECC---EEEEEEECCCCc-------------cchhHHHhhhhhCCEEEEEE-ECCCCC
Confidence 00111111 258999999954 23356667888899555555 565444
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+. ...++.+...+.|+|+|+||+|+..
T Consensus 375 ~~qT-~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 375 MPQT-IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred CHhH-HHHHHHHHhcCCcEEEEEECccccc
Confidence 3333 4455555566789999999999964
No 159
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.88 E-value=3e-09 Score=103.78 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||.. ....+...+++.++++||++...+.. +... .++..++...+ +.++|+|.||+
T Consensus 47 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~ 112 (174)
T smart00174 47 ELGLWDTAGQE-------------DYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTKL 112 (174)
T ss_pred EEEEEECCCCc-------------ccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCh
Confidence 48999999954 22335556788999777666543321 1111 12222333333 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 113 Dl~~~ 117 (174)
T smart00174 113 DLRED 117 (174)
T ss_pred hhhhC
Confidence 99763
No 160
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.88 E-value=1e-08 Score=101.37 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=41.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH----HHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD----ALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~----~l~l~~~~d~~~~rti~VltK 227 (728)
.+.|+||||.. ....+...|++.+|++|+++...+. -+-.+ ++...+... ...|.|+|.||
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~piilv~nK 114 (187)
T cd04132 50 ELALWDTAGQE-------------EYDRLRPLSYPDVDVLLICYAVDNP-TSLDNVEDKWFPEVNHFC-PGTPIMLVGLK 114 (187)
T ss_pred EEEEEECCCch-------------hHHHHHHHhCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhC-CCCCEEEEEeC
Confidence 57899999943 3345666789999966666654331 11111 122223333 36899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 115 ~Dl~~~ 120 (187)
T cd04132 115 TDLRKD 120 (187)
T ss_pred hhhhhC
Confidence 999753
No 161
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.87 E-value=1.2e-08 Score=95.11 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=44.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH----HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ----MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~VltK 227 (728)
.++++|+||.... ......++...+.+|+++ +++.+....+... ........+.++++|+||
T Consensus 46 ~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk 111 (157)
T cd00882 46 KLQIWDTAGQERF-------------RSLRRLYYRGADGIILVY-DVTDRESFENVKEWLLLILINKEGENIPIILVGNK 111 (157)
T ss_pred EEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEec
Confidence 5899999997632 223366788889555555 4544433333221 233444568999999999
Q ss_pred CCCCCCCc
Q 045702 228 LDIMDRGT 235 (728)
Q Consensus 228 ~D~~~~~~ 235 (728)
+|+.....
T Consensus 112 ~D~~~~~~ 119 (157)
T cd00882 112 IDLPEERV 119 (157)
T ss_pred cccccccc
Confidence 99986543
No 162
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.87 E-value=2.6e-08 Score=96.99 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|+..++++|+++...+.. .-.++......+ ...+.++++|.||
T Consensus 44 ~i~l~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 44 KFTIWDVGGKH-------------KLRPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred EEEEEECCCCh-------------hcchHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 57999999964 23456777899999777777644321 111222222222 1234789999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 110 ~Dl~~~ 115 (169)
T cd04158 110 QDVAGA 115 (169)
T ss_pred cCcccC
Confidence 999653
No 163
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.86 E-value=2.3e-08 Score=102.75 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999976
No 164
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.86 E-value=1.5e-08 Score=105.03 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|+|+.++|||||++++++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 699999999999999999998776
No 165
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.86 E-value=7.6e-09 Score=106.30 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=85.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcc--cCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPR--GCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~--~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
.+.|.+||-+|||||||||||+..+ |. ....+|-.|..-.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~------------------------------------ 237 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGT------------------------------------ 237 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--Ccccccceeeeccccce------------------------------------
Confidence 4568899999999999999999875 32 2223444443210
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD- 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d- 201 (728)
+...+..++++-|+||++..++.+. -..--..+.|++++ ++++|++.+..
T Consensus 238 ----------------------v~yddf~q~tVADiPGiI~GAh~nk------GlG~~FLrHiER~~-~l~fVvD~s~~~ 288 (366)
T KOG1489|consen 238 ----------------------VNYDDFSQITVADIPGIIEGAHMNK------GLGYKFLRHIERCK-GLLFVVDLSGKQ 288 (366)
T ss_pred ----------------------eeccccceeEeccCccccccccccC------cccHHHHHHHHhhc-eEEEEEECCCcc
Confidence 0001111479999999998765332 12223456788888 66666666544
Q ss_pred --cccHHHHHHHHHhCC-----CCCceEEeeccCCCCCCCccHHHhHcCCCcccCCc-eeEeecCChhhh
Q 045702 202 --LATSDALQMAREADP-----TGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLG-YVGVVNRSQEDI 263 (728)
Q Consensus 202 --~~~~~~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~rs~~~~ 263 (728)
-.-+....|..++.. ...+.++|+||+|+.+.... .+..-...|+-+ .++|+.++++.+
T Consensus 289 ~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~---~l~~L~~~lq~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 289 LRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN---LLSSLAKRLQNPHVVPVSAKSGEGL 355 (366)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH---HHHHHHHHcCCCcEEEeeeccccch
Confidence 222232334444431 34679999999999733222 222222233333 566666666443
No 166
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.85 E-value=5.4e-08 Score=97.68 Aligned_cols=105 Identities=15% Similarity=0.026 Sum_probs=60.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc--cHHHHHHHHHh---------------
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA--TSDALQMAREA--------------- 214 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~--------------- 214 (728)
.|.||||+|-. .+..+...|++.++++||++.-.+.+-- -..|+..+...
T Consensus 55 ~l~IwDtaG~e-------------~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 55 FVELWDVGGSE-------------SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred EEEEEecCCch-------------hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 47899999943 4566778899999988777765443211 11223223222
Q ss_pred ----CCCCCceEEeeccCCCCCCCccHH-HhHc---CCCcccCCceeEeecCChhhhhccccH
Q 045702 215 ----DPTGSRTIGVITKLDIMDRGTNAC-NFLL---GKVVPLRLGYVGVVNRSQEDINKNRSM 269 (728)
Q Consensus 215 ----d~~~~rti~VltK~D~~~~~~~~~-~~l~---~~~~~l~~g~~~v~~rs~~~~~~~~~~ 269 (728)
.....|+|+|.||+|+.+...... ..+. .-...++...+.+.|+....+..+.+-
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~ 184 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSD 184 (202)
T ss_pred ccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCcc
Confidence 123579999999999976432111 1111 112335566677777666555554443
No 167
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.85 E-value=3e-08 Score=97.23 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.|+||||.. ....+...|++.++++|+++..++.+ .-.++...+..+. ..+.++++|+||
T Consensus 58 ~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 58 SFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred EEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 57899999954 34567888999999777776654322 1122233333321 135789999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 124 ~Dl~~~ 129 (175)
T smart00177 124 QDLPDA 129 (175)
T ss_pred cCcccC
Confidence 999653
No 168
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.85 E-value=2.3e-08 Score=101.72 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=48.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..+.||||||... +...+..++..+|++||+| ++..+...+. ..+++.+...+.+.|+|+||+|+
T Consensus 73 ~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~ilVv-D~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~ 137 (222)
T cd01885 73 YLINLIDSPGHVD-------------FSSEVTAALRLCDGALVVV-DAVEGVCVQT-ETVLRQALKERVKPVLVINKIDR 137 (222)
T ss_pred eEEEEECCCCccc-------------cHHHHHHHHHhcCeeEEEE-ECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 3689999999762 3346778899999666555 5555554443 56666666667899999999998
Q ss_pred C
Q 045702 231 M 231 (728)
Q Consensus 231 ~ 231 (728)
.
T Consensus 138 ~ 138 (222)
T cd01885 138 L 138 (222)
T ss_pred c
Confidence 6
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.84 E-value=3.4e-08 Score=99.38 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcC-CeEEEEEecCCCCcccHHHHHHH----HH--hCCCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQE-NCIILAVSPANSDLATSDALQMA----RE--ADPTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~-~~iIL~V~~a~~d~~~~~~l~l~----~~--~d~~~~rti~V 224 (728)
.+.||||||.. .++.+...|++.. +++|+++..+...-.-.++..++ .. ....+.|+++|
T Consensus 49 ~~~l~D~pG~~-------------~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 49 KFRLVDVPGHP-------------KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred eEEEEECCCCH-------------HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 47999999954 3456677889988 87777776654311111111111 11 12347999999
Q ss_pred eccCCCCCCC
Q 045702 225 ITKLDIMDRG 234 (728)
Q Consensus 225 ltK~D~~~~~ 234 (728)
+||+|+....
T Consensus 116 ~NK~Dl~~a~ 125 (203)
T cd04105 116 CNKQDLFTAK 125 (203)
T ss_pred ecchhhcccC
Confidence 9999997643
No 170
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.84 E-value=1.5e-08 Score=117.27 Aligned_cols=69 Identities=25% Similarity=0.251 Sum_probs=44.1
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLD 229 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 229 (728)
..++||||||.. .+......++...|.+|| |++++.+...+. .+.+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGhe-------------~f~~~~~~g~~~aD~aIL-VVDa~~G~~~qT-~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHE-------------KFISNAIAGGGGIDAALL-VVDADEGVMTQT-GEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHH-------------HHHHHHHhhhccCCEEEE-EEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCC
Confidence 358999999942 233445667788995555 555655543333 3333333334666 999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+.+..
T Consensus 115 lv~~~ 119 (581)
T TIGR00475 115 RVNEE 119 (581)
T ss_pred CCCHH
Confidence 98643
No 171
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.84 E-value=1.2e-08 Score=101.41 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.|+||||-. ....+...|++.++++||++...+. .+-. .++..++...+ +.+.|+|.||.
T Consensus 56 ~l~iwDt~G~~-------------~~~~l~~~~~~~ad~illVfD~t~~-~Sf~~~~~w~~~i~~~~~-~~piilVGNK~ 120 (189)
T cd04121 56 KLQLWDTSGQG-------------RFCTIFRSYSRGAQGIILVYDITNR-WSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120 (189)
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence 58999999943 4556788899999977777654432 1111 23333444333 68999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 121 DL~~ 124 (189)
T cd04121 121 HLAF 124 (189)
T ss_pred cchh
Confidence 9964
No 172
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.5e-08 Score=95.69 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=48.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.|.||||.| +++++.++-.|++++..+|++..-++..- .+..|+.=++.- +..+..+++|.||.
T Consensus 72 rLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 72 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKT 138 (221)
T ss_pred EEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccc
Confidence 589999999 56899999999999997666665443221 222233322222 23346678999999
Q ss_pred CCCCCCc
Q 045702 229 DIMDRGT 235 (728)
Q Consensus 229 D~~~~~~ 235 (728)
||.++..
T Consensus 139 DL~dkrq 145 (221)
T KOG0094|consen 139 DLSDKRQ 145 (221)
T ss_pred cccchhh
Confidence 9998743
No 173
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.84 E-value=1.7e-08 Score=98.35 Aligned_cols=68 Identities=10% Similarity=-0.031 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC-CCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD-PTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d-~~~~rti~VltK~D~ 230 (728)
.+.++|++|-.. ...+...|+..+|.+|+++. ++..-.-.....+.+.+. ..+.|+++|+||+|+
T Consensus 55 ~l~~~d~~g~~~-------------~~~~~~~~~~~~d~~llv~d-~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 120 (169)
T cd01892 55 YLILREVGEDEV-------------AILLNDAELAACDVACLVYD-SSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADL 120 (169)
T ss_pred EEEEEecCCccc-------------ccccchhhhhcCCEEEEEEe-CCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccc
Confidence 478999998542 22355667899996666654 432211112224444442 236899999999999
Q ss_pred CCC
Q 045702 231 MDR 233 (728)
Q Consensus 231 ~~~ 233 (728)
.+.
T Consensus 121 ~~~ 123 (169)
T cd01892 121 DEQ 123 (169)
T ss_pred ccc
Confidence 643
No 174
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.83 E-value=2.1e-08 Score=94.68 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=24.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
.+|+++|..+||||||+|+|++.. .|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45433
No 175
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.83 E-value=5.1e-08 Score=96.32 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-CC---CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-DP---TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d~---~~~rti~VltK 227 (728)
.+.|+||||.. ..+.+...|+..++++|+++..++.+ .-.++...+..+ .. ...++++|+||
T Consensus 62 ~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK 127 (182)
T PTZ00133 62 KFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFVVDSNDRE-RIGDAREELERMLSEDELRDAVLLVFANK 127 (182)
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhCHhhcCCCEEEEEeC
Confidence 58999999953 45567888999999777776544322 111222222222 11 35789999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
.|+.+
T Consensus 128 ~Dl~~ 132 (182)
T PTZ00133 128 QDLPN 132 (182)
T ss_pred CCCCC
Confidence 99864
No 176
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.83 E-value=2.2e-08 Score=118.81 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=82.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.+..|+|+|..++|||||+|+|++..- ...+ .... . +|....|+.....
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~~~~-----~----------------~g~~~~D~~~~e~--- 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-IGEV-----H----------------DGAATMDWMEQEK--- 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-cccc-----c----------------CCccccCCCHHHH---
Confidence 466899999999999999999985321 1001 0000 0 1222223222211
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
..+++-+.....+...+ ..++||||||..+. ...+..+++..|++||+| ++..+..
T Consensus 58 ---------~rgiti~~~~~~~~~~~-~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVv-da~~g~~ 113 (689)
T TIGR00484 58 ---------ERGITITSAATTVFWKG-HRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVL-DAVGGVQ 113 (689)
T ss_pred ---------hcCCCEecceEEEEECC-eEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEE-eCCCCCC
Confidence 12344333333333333 36999999998631 124678889999555544 5655555
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.++ ..+++.+...+.+.++|+||+|+....
T Consensus 114 ~~~-~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 114 PQS-ETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhH-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 544 566666666789999999999998644
No 177
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.82 E-value=1.5e-08 Score=103.42 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|||++|+|||||++++++..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999986655
No 178
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.81 E-value=1.2e-08 Score=107.42 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=54.5
Q ss_pred CeEEEeCCCCcccCC-CCCchhHHHHHHHHHHHHhhcC-------------CeEEEEEecCCCCcccHHHHHHHHHhCCC
Q 045702 152 NMTLVDLPGITKVPV-GDQPTDIEARIRKMIMAYIRQE-------------NCIILAVSPANSDLATSDALQMAREADPT 217 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~-~~~~~~~~~~~~~~~~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~~ 217 (728)
+|+||||||+...-. ......+...+.+....|+.+. |++++++.|....+...| ++.++++..
T Consensus 64 ~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls~- 141 (281)
T PF00735_consen 64 NLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRLSK- 141 (281)
T ss_dssp EEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHHTT-
T ss_pred EEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHhcc-
Confidence 799999999975421 1112344555666666666533 455566666667777777 789999986
Q ss_pred CCceEEeeccCCCCCCCcc
Q 045702 218 GSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 218 ~~rti~VltK~D~~~~~~~ 236 (728)
..++|-||.|+|.+...+-
T Consensus 142 ~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 142 RVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp TSEEEEEESTGGGS-HHHH
T ss_pred cccEEeEEecccccCHHHH
Confidence 4889999999999986543
No 179
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.80 E-value=5.3e-08 Score=94.80 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~VltK 227 (728)
.+.++|+||.. .+..++..|++.++++++++...+.. .-.... .+.+.....+.|+++|+||
T Consensus 59 ~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 124 (173)
T cd04155 59 KLNVWDIGGQR-------------AIRPYWRNYFENTDCLIYVIDSADKK-RLEEAGAELVELLEEEKLAGVPVLVFANK 124 (173)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 57899999954 34456778889999666666443311 111111 2222223346899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 125 ~D~~~~ 130 (173)
T cd04155 125 QDLATA 130 (173)
T ss_pred CCCccC
Confidence 999754
No 180
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.79 E-value=7e-08 Score=94.17 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..|+|+|+.+||||||++++++..|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998775
No 181
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.79 E-value=2.4e-08 Score=102.33 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=45.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-cc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-AT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.||||||-. .+..+...|++.++++||++...+.+- .+ ..|...++...+ ..++|+|.||+
T Consensus 62 ~l~iwDTaG~e-------------~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~ 127 (232)
T cd04174 62 ELSLWDTSGSP-------------YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKT 127 (232)
T ss_pred EEEEEeCCCch-------------hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECc
Confidence 58999999932 455677789999997777765543221 11 223444555554 57999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 128 DL~~ 131 (232)
T cd04174 128 DLRT 131 (232)
T ss_pred cccc
Confidence 9854
No 182
>PRK00007 elongation factor G; Reviewed
Probab=98.79 E-value=3.8e-08 Score=116.63 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.+..|+|+|..++|||||+|+|+...- .. +..... . .+....|+.....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g------~~-~~~g~v-----~----------------~~~~~~D~~~~E~--- 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTG------VN-HKIGEV-----H----------------DGAATMDWMEQEQ--- 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcC------Cc-cccccc-----c----------------CCcccCCCCHHHH---
Confidence 466899999999999999999974210 00 000000 0 1122333332221
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
..+++.+...+.+...+ ..++||||||..+ ... -+.+.+...|++|| |+++..++.
T Consensus 58 ---------~rg~ti~~~~~~~~~~~-~~~~liDTPG~~~------------f~~-ev~~al~~~D~~vl-Vvda~~g~~ 113 (693)
T PRK00007 58 ---------ERGITITSAATTCFWKD-HRINIIDTPGHVD------------FTI-EVERSLRVLDGAVA-VFDAVGGVE 113 (693)
T ss_pred ---------hCCCCEeccEEEEEECC-eEEEEEeCCCcHH------------HHH-HHHHHHHHcCEEEE-EEECCCCcc
Confidence 13444444333443332 3799999999651 222 26677888895554 556777777
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.++ ..+++.+...+.+.|+++||+|+....
T Consensus 114 ~qt-~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 114 PQS-ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred hhh-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 666 778888877889999999999998644
No 183
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.79 E-value=3.9e-08 Score=99.73 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=45.5
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+ +...+..++..+|++|+++. +........ ..+++.+...+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVvD-~~~~~~~~~-~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVVD-VVEGVTSNT-ERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEEE-CCCCCCHHH-HHHHHHHHHcCCCEEEEEECccc
Confidence 3689999999652 23456788899996666664 444433322 44445554456899999999998
Q ss_pred CC
Q 045702 231 MD 232 (728)
Q Consensus 231 ~~ 232 (728)
..
T Consensus 136 ~~ 137 (213)
T cd04167 136 LI 137 (213)
T ss_pred Cc
Confidence 73
No 184
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.79 E-value=3.1e-08 Score=114.49 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=44.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||.. .+..+..+++..+|.+|| |++++.++..+. ...++.+...+.++++|+||+|+.
T Consensus 72 ~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~Il-VvDa~~g~~~qt-~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHE-------------AFTNLRKRGGALADIAIL-VVDINEGFQPQT-IEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CEEEEECCChH-------------HHHHHHHHhHhhCCEEEE-EEECCCCCCHhH-HHHHHHHHHcCCCEEEEEECcCCc
Confidence 48999999954 334556677888995555 445555444433 444444444678999999999986
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
.
T Consensus 137 ~ 137 (586)
T PRK04004 137 P 137 (586)
T ss_pred h
Confidence 3
No 185
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.78 E-value=4e-08 Score=113.90 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=76.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+..|++||+.++|||||+++|+... +..++.. .+....|..+...
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~-------------------------~~~~~~D~~~~Er---- 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISERE-------------------------MREQVLDSMDLER---- 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccc-------------------------ccccccCCChHHH----
Confidence 3469999999999999999998643 1112110 0011111111111
Q ss_pred HhhhhcCCCCCcccceEEEEEec--CCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISS--PNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~--p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
..+-.+....+.+.+.. .....+.||||||.. .+...+..|+..+|++||++ +++.+.
T Consensus 48 ------erGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD~aILVv-Dat~g~ 107 (595)
T TIGR01393 48 ------ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACEGALLLV-DAAQGI 107 (595)
T ss_pred ------hcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEEEe-cCCCCC
Confidence 01122333344454431 222468999999975 23456678999999655554 565555
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+. ...+......+.++|+|+||+|+.+
T Consensus 108 ~~qt-~~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 108 EAQT-LANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred CHhH-HHHHHHHHHcCCCEEEEEECcCCCc
Confidence 4444 2222222234679999999999864
No 186
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.78 E-value=2.3e-08 Score=98.14 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=44.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||-. ....+...|++.++++||++...+.+ +.+- .+...++...+ ..|+|+|.||+
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~ 115 (175)
T cd01874 50 TLGLFDTAGQE-------------DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQI 115 (175)
T ss_pred EEEEEECCCcc-------------chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECH
Confidence 58899999954 23345566899999777777654322 1111 13333443333 58999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 116 Dl~~~ 120 (175)
T cd01874 116 DLRDD 120 (175)
T ss_pred hhhhC
Confidence 98653
No 187
>PRK12739 elongation factor G; Reviewed
Probab=98.78 E-value=3.7e-08 Score=116.81 Aligned_cols=135 Identities=17% Similarity=0.203 Sum_probs=83.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.+..|+|||..++|||||+|+|+...- ...+ .... . .+....|+.....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g------~~~~-~~~v-----~----------------~~~~~~D~~~~E~--- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTG------KSHK-IGEV-----H----------------DGAATMDWMEQEQ--- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCC------Cccc-cccc-----c----------------CCccccCCChhHh---
Confidence 456799999999999999999985321 0000 0000 0 1122223322211
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
..+++-+...+.+... ...++||||||..+ +...+..++...|+ +++|+++..+..
T Consensus 56 ---------~rgiti~~~~~~~~~~-~~~i~liDTPG~~~-------------f~~e~~~al~~~D~-~ilVvDa~~g~~ 111 (691)
T PRK12739 56 ---------ERGITITSAATTCFWK-GHRINIIDTPGHVD-------------FTIEVERSLRVLDG-AVAVFDAVSGVE 111 (691)
T ss_pred ---------hcCCCccceeEEEEEC-CEEEEEEcCCCHHH-------------HHHHHHHHHHHhCe-EEEEEeCCCCCC
Confidence 1234444333333332 23689999999651 22347888999994 555556766766
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.++ ..+++.+...+.+.|+++||+|+....
T Consensus 112 ~qt-~~i~~~~~~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 112 PQS-ETVWRQADKYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 665 677777777789999999999998643
No 188
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.77 E-value=4.1e-08 Score=100.04 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+.. .-. .++..++... .+.++++|.||+
T Consensus 63 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilvfD~~~~~-s~~~i~~w~~~i~~~~-~~~piilvgNK~ 127 (219)
T PLN03071 63 RFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127 (219)
T ss_pred EEEEEECCCch-------------hhhhhhHHHcccccEEEEEEeCCCHH-HHHHHHHHHHHHHHhC-CCCcEEEEEEch
Confidence 58999999954 33466677999999777776544322 111 2233333343 368999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 128 Dl~~ 131 (219)
T PLN03071 128 DVKN 131 (219)
T ss_pred hhhh
Confidence 9964
No 189
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.76 E-value=5.9e-08 Score=97.69 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccHHHHHHHHHhCCC-CCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATSDALQMAREADPT-GSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~~l~l~~~~d~~-~~rti~VltK~D 229 (728)
.++||||||.. .+...+...+...|.+++++. +... ...+. ...+..+... ..++|+|+||+|
T Consensus 84 ~i~~iDtPG~~-------------~~~~~~~~~~~~~D~~llVvd-~~~~~~~~~t-~~~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 84 HVSFVDCPGHE-------------ILMATMLSGAAVMDGALLLIA-ANEPCPQPQT-SEHLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred EEEEEECCChH-------------HHHHHHHHhhhcCCEEEEEEE-CCCCCCCcch-HHHHHHHHHcCCCcEEEEEEchh
Confidence 58999999932 233455666778895555554 4432 22221 2233322222 346899999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 149 l~~~ 152 (203)
T cd01888 149 LVKE 152 (203)
T ss_pred ccCH
Confidence 9753
No 190
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.76 E-value=3.2e-08 Score=97.86 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc--HHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT--SDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.+|||+|-. ....+...|++.++++++++...+..--. ..++..++...+...+ |+|.||+|
T Consensus 50 ~l~iwDt~G~~-------------~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~D 115 (182)
T cd04128 50 TFSIWDLGGQR-------------EFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYD 115 (182)
T ss_pred EEEEEeCCCch-------------hHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchh
Confidence 58999999943 34457778999999766666544322111 1234444454454455 78999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 116 l~~ 118 (182)
T cd04128 116 LFA 118 (182)
T ss_pred ccc
Confidence 964
No 191
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.76 E-value=2.7e-08 Score=98.04 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=44.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.||||||-. ....+...|++.++++||++...+.+ +.+ ..+...+++..+ ..++|+|.||+
T Consensus 50 ~l~iwDt~G~~-------------~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~ 115 (178)
T cd04131 50 ELSLWDTSGSP-------------YYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKT 115 (178)
T ss_pred EEEEEECCCch-------------hhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEECh
Confidence 58999999942 33455667899999777777544322 111 233444555554 57999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 116 DL~~ 119 (178)
T cd04131 116 DLRT 119 (178)
T ss_pred hhhc
Confidence 9964
No 192
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.75 E-value=3.8e-08 Score=114.40 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=55.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D~ 230 (728)
.++||||||.- ..+..+ ...+...|.++ +|++++.++..++ .+.+..+...+.+ .|+|+||+|+
T Consensus 52 ~i~~IDtPGhe------------~fi~~m-~~g~~~~D~~l-LVVda~eg~~~qT-~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 52 VLGFIDVPGHE------------KFLSNM-LAGVGGIDHAL-LVVACDDGVMAQT-REHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred EEEEEECCCHH------------HHHHHH-HHHhhcCCEEE-EEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCcc
Confidence 47999999942 234444 45678899555 5556766665554 4444444434455 5799999999
Q ss_pred CCCCccH--H----HhHcCCCcccCCceeEeecCChhhhh
Q 045702 231 MDRGTNA--C----NFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 231 ~~~~~~~--~----~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
.+..... . +.+.+... -...++.++..+...++
T Consensus 117 v~~~~~~~v~~ei~~~l~~~~~-~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 117 VDEARIAEVRRQVKAVLREYGF-AEAKLFVTAATEGRGID 155 (614)
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEeCCCCCCCH
Confidence 8643211 1 22221110 02456777777665443
No 193
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.75 E-value=8.2e-08 Score=109.63 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
....|++||..++|||||+|+|+... |..++... +.-... ......|+.++...
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~-v~~~~~-----------------~~~~~~D~~~~E~~-- 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGT-VKGRKS-----------------GRHATSDWMEMEKQ-- 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccce-eecccc-----------------CccccCCCcHHHHh--
Confidence 35579999999999999999997321 11111111 000000 00111233332211
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+-.++...+.++. .+ ..++||||||.. .+...+..++..+|++|+++ ++..++.
T Consensus 63 --------rgiSi~~~~~~~~~--~~-~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVv-Da~~gv~ 117 (526)
T PRK00741 63 --------RGISVTSSVMQFPY--RD-CLINLLDTPGHE-------------DFSEDTYRTLTAVDSALMVI-DAAKGVE 117 (526)
T ss_pred --------hCCceeeeeEEEEE--CC-EEEEEEECCCch-------------hhHHHHHHHHHHCCEEEEEE-ecCCCCC
Confidence 11223333333433 22 358999999964 12344677889999666555 5555554
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.+. ..+++.....+.|+++++||+|+....
T Consensus 118 ~~t-~~l~~~~~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 118 PQT-RKLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred HHH-HHHHHHHHhcCCCEEEEEECCcccccC
Confidence 443 566666666789999999999987644
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.75 E-value=3.8e-08 Score=114.11 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=58.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||..+..... .+ +.+.+.|+. .+| ++++|++++. . +..+.+..++...+.|+++|+||+|
T Consensus 42 ~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aD-vvI~VvDat~-l--er~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPD-LVVNVVDASN-L--ERNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred EEEEEECCCccccCccc----hH---HHHHHHHHhhcCCC-EEEEEecCCc-c--hhhHHHHHHHHhcCCCEEEEEehhH
Confidence 47899999987542211 11 234455654 567 5555666643 2 2235555666666899999999999
Q ss_pred CCCCCccHH--HhHcCCCcccCCceeEeecCChhhhhc
Q 045702 230 IMDRGTNAC--NFLLGKVVPLRLGYVGVVNRSQEDINK 265 (728)
Q Consensus 230 ~~~~~~~~~--~~l~~~~~~l~~g~~~v~~rs~~~~~~ 265 (728)
+.+...... +.+.. .++..++.++.+...+++.
T Consensus 111 l~~~~~i~~d~~~L~~---~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 111 EAEKKGIRIDEEKLEE---RLGVPVVPTSATEGRGIER 145 (591)
T ss_pred HHHhCCChhhHHHHHH---HcCCCEEEEECCCCCCHHH
Confidence 975332111 12211 2446678888877665543
No 195
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.75 E-value=4.9e-08 Score=94.88 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=41.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||... ...+...|+..+|++|+++...+ ...-+. ++..++...+ ..|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 50 RFNVWDTAGQEK-------------FGGLRDGYYIGGQCAIIMFDVTS-RVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEECCCChh-------------hccccHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 578999999542 22344557888997766665432 211111 2233333333 68999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 115 Dl~~ 118 (166)
T cd00877 115 DIKD 118 (166)
T ss_pred hccc
Confidence 9973
No 196
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.75 E-value=3.3e-08 Score=96.39 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=41.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-cc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-AT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||||-... ..+...++...+++|+++...+..- .. ..+...++.. ..+.+.++|.||+
T Consensus 49 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~ 114 (174)
T cd04135 49 LLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQI 114 (174)
T ss_pred EEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEch
Confidence 4789999995421 2233456788887666664433211 11 1123344444 3478999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 115 Dl~~~~ 120 (174)
T cd04135 115 DLRDDP 120 (174)
T ss_pred hhhcCh
Confidence 997543
No 197
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.74 E-value=3.5e-08 Score=100.49 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-cc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-AT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.||||+|-. .+..+...|+...|++||++...+.+- .+ ..+...++...+ +.|+|+|.||+
T Consensus 50 ~L~iwDt~G~e-------------~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~ 115 (222)
T cd04173 50 ELNMWDTSGSS-------------YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKL 115 (222)
T ss_pred EEEEEeCCCcH-------------HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECc
Confidence 58999999943 344556678999997777775443211 11 011222333333 58999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 116 DL~~~ 120 (222)
T cd04173 116 DMRTD 120 (222)
T ss_pred ccccc
Confidence 99653
No 198
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.74 E-value=9.6e-08 Score=94.30 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=45.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-C---CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-D---PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~VltK 227 (728)
.+.|+||||-. ..+.+...|++.++++|+++...+.+ .-.++...+..+ . ....+.++|.||
T Consensus 62 ~~~i~D~~Gq~-------------~~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 62 SFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 48999999932 45678889999999777776544322 112223333332 1 136799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
.|+.+.
T Consensus 128 ~Dl~~~ 133 (181)
T PLN00223 128 QDLPNA 133 (181)
T ss_pred CCCCCC
Confidence 998654
No 199
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.73 E-value=5.9e-07 Score=96.23 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEE
Q 045702 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALM 86 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~ 86 (728)
|++||.+|+|||||+|+|++..+.......||+-|+.-.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~ 39 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGV 39 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEE
Confidence 689999999999999999998753333345888887643
No 200
>CHL00071 tufA elongation factor Tu
Probab=98.73 E-value=4.4e-08 Score=109.14 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=47.0
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLD 229 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 229 (728)
..++||||||.. .++..+ ..-+..+| ++++|+++..++..++ ..++..+...+.+ .|+|+||+|
T Consensus 75 ~~~~~iDtPGh~------------~~~~~~-~~~~~~~D-~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 75 RHYAHVDCPGHA------------DYVKNM-ITGAAQMD-GAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred eEEEEEECCChH------------HHHHHH-HHHHHhCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccC
Confidence 368999999943 244444 44567889 4555666766666655 5566666666777 678999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 140 ~~~~ 143 (409)
T CHL00071 140 QVDD 143 (409)
T ss_pred CCCH
Confidence 9864
No 201
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.73 E-value=5.1e-08 Score=95.27 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=41.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+.. +... .++..++... .+.++++|.||+
T Consensus 49 ~~~i~Dt~G~~-------------~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~ 114 (173)
T cd04130 49 RLQLCDTAGQD-------------EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQA 114 (173)
T ss_pred EEEEEECCCCh-------------hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeCh
Confidence 57899999964 22334455889999777776544322 1111 1233333322 358999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 115 Dl~~~ 119 (173)
T cd04130 115 DLRTD 119 (173)
T ss_pred hhccC
Confidence 99653
No 202
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.73 E-value=7.8e-08 Score=95.77 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=44.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||-- ..+.+...|++.++++|+++...+.+ +.+- .+...++...+ +.|+++|.||.
T Consensus 52 ~l~i~Dt~G~e-------------~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~ 117 (191)
T cd01875 52 SLNLWDTAGQE-------------EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKK 117 (191)
T ss_pred EEEEEECCCch-------------hhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeCh
Confidence 58999999943 45567788999999777777544322 1111 12222233333 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 118 DL~~~ 122 (191)
T cd01875 118 DLRND 122 (191)
T ss_pred hhhcC
Confidence 99653
No 203
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.73 E-value=3.1e-08 Score=100.99 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC------CcccHHH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS------DLATSDA 207 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~------d~~~~~~ 207 (728)
.+++.+.....+...+ ..++||||||... .. ..+..++..+|++|++|..... +...+.
T Consensus 61 rg~T~d~~~~~~~~~~-~~i~liDtpG~~~------------~~-~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~- 125 (219)
T cd01883 61 RGVTIDVGLAKFETEK-YRFTILDAPGHRD------------FV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQT- 125 (219)
T ss_pred CccCeecceEEEeeCC-eEEEEEECCChHH------------HH-HHHHHHhhhCCEEEEEEECCCCccccccccccch-
Confidence 3455555544444433 4799999999641 22 2344567889966655543332 222222
Q ss_pred HHHHHHhCCCC-CceEEeeccCCCCC
Q 045702 208 LQMAREADPTG-SRTIGVITKLDIMD 232 (728)
Q Consensus 208 l~l~~~~d~~~-~rti~VltK~D~~~ 232 (728)
...+......+ .++|+|+||+|+..
T Consensus 126 ~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 126 REHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHHcCCCeEEEEEEcccccc
Confidence 22222222223 68899999999984
No 204
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.72 E-value=4.6e-08 Score=94.10 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=57.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.|+|+||-. .+..+...+++..+++|+++...+..- .-..++..+....+...+.++|.||.|
T Consensus 49 ~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 49 NLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT
T ss_pred ccccccccccc-------------cccccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence 58999999943 223455678899997777765432110 111344455556665689999999999
Q ss_pred CCCCCccHHHhHcCCCcccCCceeEeecCChhh
Q 045702 230 IMDRGTNACNFLLGKVVPLRLGYVGVVNRSQED 262 (728)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~ 262 (728)
+.+......+..+.....++.+|+-++......
T Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 116 LSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp GGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred ccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 986332211111111122346777777665443
No 205
>PLN03127 Elongation factor Tu; Provisional
Probab=98.72 E-value=5.3e-08 Score=109.16 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMARE 213 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~ 213 (728)
.+++.+...+.+...+ ..++||||||+. ..+..++.. +..+| ++++|++++.++..++ .+++..
T Consensus 108 rGiTi~~~~~~~~~~~-~~i~~iDtPGh~------------~f~~~~~~g-~~~aD-~allVVda~~g~~~qt-~e~l~~ 171 (447)
T PLN03127 108 RGITIATAHVEYETAK-RHYAHVDCPGHA------------DYVKNMITG-AAQMD-GGILVVSAPDGPMPQT-KEHILL 171 (447)
T ss_pred cCceeeeeEEEEcCCC-eEEEEEECCCcc------------chHHHHHHH-HhhCC-EEEEEEECCCCCchhH-HHHHHH
Confidence 3455555555555433 368999999974 245555543 34688 5555666776665555 666666
Q ss_pred hCCCCCc-eEEeeccCCCCC
Q 045702 214 ADPTGSR-TIGVITKLDIMD 232 (728)
Q Consensus 214 ~d~~~~r-ti~VltK~D~~~ 232 (728)
+...+.+ .|+|+||+|+++
T Consensus 172 ~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 172 ARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHcCCCeEEEEEEeeccCC
Confidence 6666778 478999999985
No 206
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.72 E-value=3.7e-08 Score=109.56 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH--HHHHH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD--ALQMA 211 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~ 211 (728)
.+++-+.....+...+ ..++||||||.. ..+..+. .-+..+|.+ ++|+++..++..++ .+.++
T Consensus 64 rgiTid~~~~~~~~~~-~~~~liDtPGh~------------~f~~~~~-~~~~~aD~a-llVVda~~G~~~qt~~~~~~~ 128 (406)
T TIGR02034 64 QGITIDVAYRYFSTDK-RKFIVADTPGHE------------QYTRNMA-TGASTADLA-VLLVDARKGVLEQTRRHSYIA 128 (406)
T ss_pred CCcCeEeeeEEEccCC-eEEEEEeCCCHH------------HHHHHHH-HHHhhCCEE-EEEEECCCCCccccHHHHHHH
Confidence 3555555555554443 379999999943 2444444 357788955 45556666665443 23445
Q ss_pred HHhCCCCCceEEeeccCCCCCCCccHH--------HhHcCCCcccCCceeEeecCChhhhh
Q 045702 212 READPTGSRTIGVITKLDIMDRGTNAC--------NFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 212 ~~~d~~~~rti~VltK~D~~~~~~~~~--------~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
+.+. ..+.|+|+||+|+.+...+.. .++.... .....++.++......+.
T Consensus 129 ~~~~--~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~iipiSA~~g~ni~ 186 (406)
T TIGR02034 129 SLLG--IRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLG-FRDVTFIPLSALKGDNVV 186 (406)
T ss_pred HHcC--CCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcC-CCCccEEEeecccCCCCc
Confidence 5443 346888999999986433211 1111111 113457788877665443
No 207
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.72 E-value=4.7e-08 Score=96.60 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=45.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.||||+|-. ....+...|++.++++||++...+.+ +.+ ..+...++...+ ..+.|+|.||+
T Consensus 54 ~l~iwDtaG~e-------------~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~ 119 (182)
T cd04172 54 ELSLWDTSGSP-------------YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKS 119 (182)
T ss_pred EEEEEECCCch-------------hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeECh
Confidence 58999999932 44566778999999777777644321 111 223344555554 58999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 120 DL~~ 123 (182)
T cd04172 120 DLRT 123 (182)
T ss_pred hhhc
Confidence 9854
No 208
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.71 E-value=1.4e-07 Score=107.89 Aligned_cols=138 Identities=13% Similarity=0.179 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
....|+|||..++|||||+|+|+-.. |...+.+. +. .... .+.+..|+.....
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~g~--------------~~~t~~D~~~~E~--- 62 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GRGS--------------QRHAKSDWMEMEK--- 62 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---cccc--------------cccccCCCCHHHH---
Confidence 45689999999999999999997321 11111111 00 0000 0012233332221
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
..++|-..-.+.+...+ ..+.||||||.. .+...+.+++..+|++|++|. +...+.
T Consensus 63 ---------~rgisi~~~~~~~~~~~-~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVvD-a~~gv~ 118 (527)
T TIGR00503 63 ---------QRGISITTSVMQFPYRD-CLVNLLDTPGHE-------------DFSEDTYRTLTAVDNCLMVID-AAKGVE 118 (527)
T ss_pred ---------hcCCcEEEEEEEEeeCC-eEEEEEECCChh-------------hHHHHHHHHHHhCCEEEEEEE-CCCCCC
Confidence 12344333333333322 368999999964 223445678899996666554 544444
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+. ..+++.....+.|+|+|+||+|+...
T Consensus 119 ~~t-~~l~~~~~~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 119 TRT-RKLMEVTRLRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred HHH-HHHHHHHHhcCCCEEEEEECccccCC
Confidence 433 44555555567899999999998643
No 209
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.71 E-value=9.4e-08 Score=97.27 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH-HHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS-DALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l~l~~~~d~~~~rti~VltK~D 229 (728)
++.||||||.. ....+...|++.++++|+++...+.. +.+. .++..+.+......++|+|.||+|
T Consensus 45 ~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~D 111 (220)
T cd04126 45 NISIWDTAGRE-------------QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLD 111 (220)
T ss_pred EEEEEeCCCcc-------------cchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 58999999953 23456677899999766666543321 1111 112222233334678999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 112 L~~ 114 (220)
T cd04126 112 LTE 114 (220)
T ss_pred ccc
Confidence 975
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.70 E-value=9.3e-08 Score=110.62 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=47.9
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||.. .+...+..+++.+|+++|+| ++..+...+. ..+++.+...+.|.|+|+||+|+
T Consensus 64 ~kinlIDTPGh~-------------DF~~ev~~~l~~aD~alLVV-Da~~G~~~qT-~~~l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 64 TKINIVDTPGHA-------------DFGGEVERVLGMVDGVLLLV-DASEGPMPQT-RFVLKKALELGLKPIVVINKIDR 128 (594)
T ss_pred EEEEEEECCCHH-------------HHHHHHHHHHHhCCEEEEEE-eCCCCCcHHH-HHHHHHHHHCCCCEEEEEECCCC
Confidence 368999999954 23345678899999666655 4555554443 44555555567899999999999
Q ss_pred CCC
Q 045702 231 MDR 233 (728)
Q Consensus 231 ~~~ 233 (728)
.+.
T Consensus 129 ~~a 131 (594)
T TIGR01394 129 PSA 131 (594)
T ss_pred CCc
Confidence 653
No 211
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.70 E-value=3.9e-08 Score=96.65 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||+|-. ....+...|++.++++||++.-.+.. +.+ ..++..++...+ ..++|+|.||+
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~ 115 (176)
T cd04133 50 NLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKL 115 (176)
T ss_pred EEEEEECCCCc-------------cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCh
Confidence 68999999954 34455667999999877777544322 222 123444444444 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 116 Dl~~~ 120 (176)
T cd04133 116 DLRDD 120 (176)
T ss_pred hhccC
Confidence 99653
No 212
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.70 E-value=5.9e-08 Score=98.20 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=58.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeE--EEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCI--ILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~i--IL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+++||+||+....-+. ...+.+.+++..|+.+.+.+ +++.+++...+.+-| ...+..+...+.|..+|+||||
T Consensus 184 ~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred eEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehhh
Confidence 48999999975443322 23345668899999877644 445567777777777 7778888888999999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
.....
T Consensus 260 K~k~~ 264 (320)
T KOG2486|consen 260 KQKKV 264 (320)
T ss_pred hhhhc
Confidence 98643
No 213
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=9.4e-08 Score=93.45 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=84.1
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
...+..|++||+.++|||+++-.+....|-+. ....+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------~~sTi------------------------------------ 45 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------FISTI------------------------------------ 45 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC-------ccceE------------------------------------
Confidence 34577899999999999999999987776211 11110
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC-
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS- 200 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~- 200 (728)
++....-.+++.+ ....|.+|||.| ++..+.++.+|++.+..++|++.-.+.
T Consensus 46 -------------GIDFk~kti~l~g-~~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyDitne~ 98 (207)
T KOG0078|consen 46 -------------GIDFKIKTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYDITNEK 98 (207)
T ss_pred -------------EEEEEEEEEEeCC-eEEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEEccchH
Confidence 1111111222222 112589999999 358899999999999988888865542
Q ss_pred Cccc-HHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 201 DLAT-SDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 201 d~~~-~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
.+.+ ..|++.+++..+.+.+.++|-||+|+.++..
T Consensus 99 Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~ 134 (207)
T KOG0078|consen 99 SFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQ 134 (207)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEeecccccccccc
Confidence 1111 2356667777778899999999999987443
No 214
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.69 E-value=1.5e-07 Score=109.20 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
....|++||+.++|||||+++|+... |..++.- .+..+.|..+...+
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~-------------------------~~~~~lD~~~~Ere-- 52 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSERE-------------------------MKAQVLDSMDLERE-- 52 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc-------------------------cccccccCchHHhh--
Confidence 34579999999999999999998542 1111110 01111222211110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCC--CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPN--VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~--~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
.+-.+....+.+.+..++ ...++||||||.. .+...+.++++.+|++||+| +++.+
T Consensus 53 --------rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~-------------dF~~~v~~sl~~aD~aILVV-Das~g 110 (600)
T PRK05433 53 --------RGITIKAQAVRLNYKAKDGETYILNLIDTPGHV-------------DFSYEVSRSLAACEGALLVV-DASQG 110 (600)
T ss_pred --------cCCcccccEEEEEEEccCCCcEEEEEEECCCcH-------------HHHHHHHHHHHHCCEEEEEE-ECCCC
Confidence 112333344555554211 2368999999976 23345678899999655555 55555
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
...++ ...+..+...+.++|+|+||+|+..
T Consensus 111 v~~qt-~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 111 VEAQT-LANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred CCHHH-HHHHHHHHHCCCCEEEEEECCCCCc
Confidence 54444 3333333335789999999999864
No 215
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.68 E-value=6.9e-08 Score=94.68 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=43.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.|+||||-. ....+...|++.++++||++...+.+ +..- .++..++...+ ..|+++|.||+
T Consensus 50 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~ 115 (174)
T cd01871 50 NLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKL 115 (174)
T ss_pred EEEEEECCCch-------------hhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeCh
Confidence 57899999943 33456667899999877777655422 1111 12333344333 68999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 116 Dl~~ 119 (174)
T cd01871 116 DLRD 119 (174)
T ss_pred hhcc
Confidence 9964
No 216
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.68 E-value=3.4e-08 Score=98.19 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=44.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.|+||||-. ....+...|+..++++||++.-.+.+ +.+. .++..++...+ +.++++|.||+
T Consensus 49 ~l~i~Dt~G~~-------------~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~ 114 (189)
T cd04134 49 ELSLWDTAGQE-------------EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKC 114 (189)
T ss_pred EEEEEECCCCh-------------hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECh
Confidence 58999999953 22344556888999777777544322 2221 13334444333 68999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+....
T Consensus 115 Dl~~~~ 120 (189)
T cd04134 115 DLREAR 120 (189)
T ss_pred hhccCh
Confidence 997643
No 217
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=5.1e-08 Score=105.47 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=53.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCC--CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADP--TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~--~~~rti~VltK 227 (728)
.+.++|||||-+.+- +....++..+-..|.+-.+.||++.+-+... +-.+-.+|...+.| ..+++|+|+||
T Consensus 216 rwQViDTPGILD~pl-----EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPE-----EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred eeeecCCccccCcch-----hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 479999999985543 2233444445556666667888887655333 33333566676666 46899999999
Q ss_pred CCCCCCCc
Q 045702 228 LDIMDRGT 235 (728)
Q Consensus 228 ~D~~~~~~ 235 (728)
+|.+.+..
T Consensus 291 ~D~m~~ed 298 (620)
T KOG1490|consen 291 IDAMRPED 298 (620)
T ss_pred ccccCccc
Confidence 99998654
No 218
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.68 E-value=1.4e-07 Score=106.80 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH--HHHHHH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS--DALQMA 211 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~ 211 (728)
.+++-+.....+... ...++||||||.. .....++.. +..+| ++++|+++..++..+ +.+.++
T Consensus 91 rgiTid~~~~~~~~~-~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G~~~qt~~~~~l~ 155 (474)
T PRK05124 91 QGITIDVAYRYFSTE-KRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKGVLDQTRRHSFIA 155 (474)
T ss_pred cCCCeEeeEEEeccC-CcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCCccccchHHHHHH
Confidence 345544433333333 3479999999932 244455554 58889 455555666655443 224455
Q ss_pred HHhCCCCCceEEeeccCCCCCCCccHH----HhH----cCCCcccCCceeEeecCChhhhh
Q 045702 212 READPTGSRTIGVITKLDIMDRGTNAC----NFL----LGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 212 ~~~d~~~~rti~VltK~D~~~~~~~~~----~~l----~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
..+. -.+.|+|+||+|+.+...+.. +.+ ..........++.++......+.
T Consensus 156 ~~lg--~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~ 214 (474)
T PRK05124 156 TLLG--IKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (474)
T ss_pred HHhC--CCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcc
Confidence 5554 247889999999985333211 111 11110113557777777665543
No 219
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.68 E-value=6.3e-08 Score=108.70 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=46.9
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC--CcccHHHHHHHH
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS--DLATSDALQMAR 212 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~--d~~~~~~l~l~~ 212 (728)
+++.+.....+...+ ..++||||||..+ .+..+ ...+..+|.+||+ ++++. ++..+. ...+.
T Consensus 69 G~T~d~~~~~~~~~~-~~i~liDtpG~~~------------~~~~~-~~~~~~aD~~ilV-vDa~~~~~~~~~~-~~~~~ 132 (425)
T PRK12317 69 GVTIDLAHKKFETDK-YYFTIVDCPGHRD------------FVKNM-ITGASQADAAVLV-VAADDAGGVMPQT-REHVF 132 (425)
T ss_pred CccceeeeEEEecCC-eEEEEEECCCccc------------chhhH-hhchhcCCEEEEE-EEcccCCCCCcch-HHHHH
Confidence 455555555554433 3699999999531 22222 3346788955554 45554 443333 22222
Q ss_pred HhCCCC-CceEEeeccCCCCC
Q 045702 213 EADPTG-SRTIGVITKLDIMD 232 (728)
Q Consensus 213 ~~d~~~-~rti~VltK~D~~~ 232 (728)
.+...+ .+.++|+||+|+.+
T Consensus 133 ~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 133 LARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHcCCCeEEEEEEcccccc
Confidence 222234 46899999999986
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=98.66 E-value=1e-07 Score=110.21 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.4
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..+.||||||..+ +...+..+++.+|++||+| ++..+...+. ...++.+...+.+.|+|+||+|+
T Consensus 68 ~~inliDTPG~~d-------------f~~~v~~~l~~aDg~ILVV-Da~~G~~~qt-~~~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 68 YRINIVDTPGHAD-------------FGGEVERVMSMVDSVLLVV-DAFDGPMPQT-RFVTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred EEEEEEECCCcch-------------hHHHHHHHHHhCCEEEEEE-ecccCccHHH-HHHHHHHHHcCCCEEEEEECcCC
Confidence 3689999999652 2345678999999666655 4544544443 44455555567899999999998
Q ss_pred CCC
Q 045702 231 MDR 233 (728)
Q Consensus 231 ~~~ 233 (728)
...
T Consensus 133 ~~a 135 (607)
T PRK10218 133 PGA 135 (607)
T ss_pred CCC
Confidence 754
No 221
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.66 E-value=3.4e-07 Score=95.56 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=75.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcc--cCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPR--GCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~--~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
-|.+||-+||||||||++++..+ |. +.-.+|-.|.--..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~------------------------------------ 202 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVR------------------------------------ 202 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEE------------------------------------
Confidence 47899999999999999999876 43 222455555332211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-- 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-- 202 (728)
+ .....+++-|.||++..++.+-- +..-..+.|+++..++.++.-+..+-
T Consensus 203 --------------------~--~~~~sfv~ADIPGLIEGAs~G~G------LG~~FLrHIERt~vL~hviD~s~~~~~d 254 (369)
T COG0536 203 --------------------V--DGGESFVVADIPGLIEGASEGVG------LGLRFLRHIERTRVLLHVIDLSPIDGRD 254 (369)
T ss_pred --------------------e--cCCCcEEEecCcccccccccCCC------ccHHHHHHHHhhheeEEEEecCcccCCC
Confidence 1 11114799999999988765432 22234567888884444444333332
Q ss_pred ccHHHHHHHHHh---CC--CCCceEEeeccCCCCCCCc
Q 045702 203 ATSDALQMAREA---DP--TGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 ~~~~~l~l~~~~---d~--~~~rti~VltK~D~~~~~~ 235 (728)
.-++...+..++ .+ ..++.++|+||+|+....+
T Consensus 255 p~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 255 PIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred HHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 122333333333 22 4689999999999765443
No 222
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.4e-07 Score=83.70 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=54.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.++||.|. +..+.++.-|++.+.++||+....|..- +-+++...++.+.-...++|+|.||||
T Consensus 71 klQiwDTagq-------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccc-------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence 5899999993 3678899999999999999997766433 233455556666667899999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+-+..
T Consensus 138 md~eR 142 (193)
T KOG0093|consen 138 MDSER 142 (193)
T ss_pred Cccce
Confidence 97654
No 223
>PLN03126 Elongation factor Tu; Provisional
Probab=98.65 E-value=1.6e-07 Score=106.03 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=76.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
.-.|+++|..++|||||+++|++... .+..+.+- .+ ...|...-.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~----------------~~---------~~~D~~~~E----- 125 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPK----------------KY---------DEIDAAPEE----- 125 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhh-----hhcccccc----------------cc---------ccccCChhH-----
Confidence 34589999999999999999996531 11111110 00 011111100
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
...+++-+.....+... ...++||||||.. +.+.++ ..-+..+|.++| |+++..+...
T Consensus 126 -------r~rGiTi~~~~~~~~~~-~~~i~liDtPGh~------------~f~~~~-~~g~~~aD~ail-VVda~~G~~~ 183 (478)
T PLN03126 126 -------RARGITINTATVEYETE-NRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAIL-VVSGADGPMP 183 (478)
T ss_pred -------HhCCeeEEEEEEEEecC-CcEEEEEECCCHH------------HHHHHH-HHHHhhCCEEEE-EEECCCCCcH
Confidence 01234444444444333 2378999999954 244444 445568885555 5566666655
Q ss_pred HHHHHHHHHhCCCCCc-eEEeeccCCCCCC
Q 045702 205 SDALQMAREADPTGSR-TIGVITKLDIMDR 233 (728)
Q Consensus 205 ~~~l~l~~~~d~~~~r-ti~VltK~D~~~~ 233 (728)
+. .+.+..+...+.+ .|+|+||+|+.+.
T Consensus 184 qt-~e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 184 QT-KEHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HH-HHHHHHHHHcCCCeEEEEEecccccCH
Confidence 54 5555555555777 7789999999863
No 224
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.63 E-value=2.2e-07 Score=94.30 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=52.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---ccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---ATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.+|||+|.. .++.+...|...++++++++......- ....+...++...+...+++.|.||+
T Consensus 55 ~~~~~Dt~gq~-------------~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (219)
T COG1100 55 KLQLWDTAGQE-------------EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKI 121 (219)
T ss_pred EEEeecCCCHH-------------HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 47999999944 667888999999998888887654121 22233444555555578999999999
Q ss_pred CCCCCCccH
Q 045702 229 DIMDRGTNA 237 (728)
Q Consensus 229 D~~~~~~~~ 237 (728)
|+.......
T Consensus 122 Dl~~~~~~~ 130 (219)
T COG1100 122 DLFDEQSSS 130 (219)
T ss_pred ccccchhHH
Confidence 999875443
No 225
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.3e-07 Score=91.10 Aligned_cols=122 Identities=18% Similarity=0.303 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-+..|+|+|+.++|||=|+-.+.+..| +- .|.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f-~e--------------------------~~~--------------------- 39 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTF-TE--------------------------SYI--------------------- 39 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCc-ch--------------------------hhc---------------------
Confidence 367899999999999999999998876 21 010
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-c
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-L 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~ 202 (728)
..-++......+++.|... .|.+|||.| +++++.++.+|.+.+|.||++..-.... +
T Consensus 40 --------sTIGVDf~~rt~e~~gk~i-KlQIWDTAG-------------QERFrtit~syYR~ahGii~vyDiT~~~SF 97 (205)
T KOG0084|consen 40 --------STIGVDFKIRTVELDGKTI-KLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVYDITKQESF 97 (205)
T ss_pred --------ceeeeEEEEEEeeecceEE-EEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEEEcccHHHh
Confidence 0112233334555555554 699999999 3688999999999999888887433211 1
Q ss_pred cc-HHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 203 AT-SDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 ~~-~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
.+ ..|+.-.++......+.++|.||+|+.+...
T Consensus 98 ~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 98 NNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRV 131 (205)
T ss_pred hhHHHHHHHhhhhccCCCCeEEEeeccccHhhee
Confidence 11 1233334444456679999999999987543
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=98.62 E-value=1.9e-07 Score=103.53 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=50.4
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
+++.+...+.+.. ....++||||||.. +.+..+.. -+..+|++ ++|+++..++..++ ...+..+
T Consensus 60 g~T~~~~~~~~~~-~~~~i~~iDtPGh~------------~f~~~~~~-~~~~~d~~-llVvd~~~g~~~~t-~~~~~~~ 123 (394)
T PRK12736 60 GITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMIT-GAAQMDGA-ILVVAATDGPMPQT-REHILLA 123 (394)
T ss_pred CccEEEEeeEecC-CCcEEEEEECCCHH------------HHHHHHHH-HHhhCCEE-EEEEECCCCCchhH-HHHHHHH
Confidence 4444444444433 23468999999943 34444433 35678854 55556666655554 5555555
Q ss_pred CCCCCc-eEEeeccCCCCC
Q 045702 215 DPTGSR-TIGVITKLDIMD 232 (728)
Q Consensus 215 d~~~~r-ti~VltK~D~~~ 232 (728)
...+.+ .|+|+||+|+.+
T Consensus 124 ~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 124 RQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHcCCCEEEEEEEecCCcc
Confidence 555777 578899999975
No 227
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.62 E-value=1.1e-07 Score=111.78 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=42.0
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
..++||||||.. .....++. -+..+|. +++|+++..++..+ +.+.+++.+. -.+.|+|+||+
T Consensus 104 ~~~~liDtPG~~------------~f~~~~~~-~~~~aD~-~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~ 167 (632)
T PRK05506 104 RKFIVADTPGHE------------QYTRNMVT-GASTADL-AIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKM 167 (632)
T ss_pred ceEEEEECCChH------------HHHHHHHH-HHHhCCE-EEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEec
Confidence 368999999943 23334443 5788894 45556666555433 3344454443 25688899999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9985
No 228
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.59 E-value=4.9e-07 Score=97.22 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred HHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhh-cc
Q 045702 28 RLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEF-RH 106 (728)
Q Consensus 28 ~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~-~~ 106 (728)
-.+|+..+. |-.- .|.|||+-++|||||||++++.-++|--.+.--|-- .-.+. ..
T Consensus 6 iykDIa~RT-~G~I-----yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R-----------------a~DELpqs 62 (492)
T TIGR02836 6 IYKDIAERT-QGDI-----YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER-----------------AQDELPQS 62 (492)
T ss_pred HHHHHHHHh-CCcE-----EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH-----------------HHhccCcC
Confidence 345555555 3221 499999999999999999999977764221100000 00000 01
Q ss_pred CCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCC-chhH------------
Q 045702 107 LPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQ-PTDI------------ 173 (728)
Q Consensus 107 ~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~-~~~~------------ 173 (728)
.+|++.+.- ..+-+..+.+.|......-.++.||||+|+.....-+. ..+-
T Consensus 63 ~~GktItTT----------------ePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~ 126 (492)
T TIGR02836 63 AAGKTIMTT----------------EPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYE 126 (492)
T ss_pred CCCCCcccC----------------CCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCccccc
Confidence 122221100 00111223334444322223689999999964432222 1110
Q ss_pred ---HHHHHHHHHHHhh-cCCeEEEEEe-cCC------CCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 174 ---EARIRKMIMAYIR-QENCIILAVS-PAN------SDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 174 ---~~~~~~~~~~yi~-~~~~iIL~V~-~a~------~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+..+--+++-|. +++ |-|+|+ +++ .++...+ .+++.++...++|.|+|+||.|-..+
T Consensus 127 IPF~~AAeiGT~kVI~dhst-IgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 127 IPFEEAAEIGTRKVIQEHST-IGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred CchhhhhhhhHHHHHHhcCc-EEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 1112222677788 666 555554 664 3444444 67888888889999999999995433
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=98.59 E-value=2.1e-07 Score=103.29 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=44.0
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceE-EeeccCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTI-GVITKLD 229 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~D 229 (728)
..++||||||.. +.+..+. .-+..+|. +++|+++..+...+. .+.+..+...+.+.| +|+||+|
T Consensus 75 ~~i~~iDtPGh~------------~f~~~~~-~~~~~aD~-~llVvda~~g~~~qt-~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 75 RHYAHVDCPGHA------------DYVKNMI-TGAAQMDG-AILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred cEEEEEECCCHH------------HHHHHHH-hhhccCCE-EEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEecC
Confidence 368999999953 2444443 45678884 455555665555554 455555555677866 5799999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 140 l~~ 142 (396)
T PRK12735 140 MVD 142 (396)
T ss_pred Ccc
Confidence 985
No 230
>PRK00049 elongation factor Tu; Reviewed
Probab=98.58 E-value=2.6e-07 Score=102.54 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=50.3
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
+++.+...+.+.. ....++||||||.. +++..+. ..+..+|.++ +|+++..++..++ ..++..+
T Consensus 60 g~Ti~~~~~~~~~-~~~~i~~iDtPG~~------------~f~~~~~-~~~~~aD~~l-lVVDa~~g~~~qt-~~~~~~~ 123 (396)
T PRK00049 60 GITINTAHVEYET-EKRHYAHVDCPGHA------------DYVKNMI-TGAAQMDGAI-LVVSAADGPMPQT-REHILLA 123 (396)
T ss_pred CeEEeeeEEEEcC-CCeEEEEEECCCHH------------HHHHHHH-hhhccCCEEE-EEEECCCCCchHH-HHHHHHH
Confidence 3343433344332 23368999999963 2444444 4467889544 5556666655544 5555555
Q ss_pred CCCCCceE-EeeccCCCCC
Q 045702 215 DPTGSRTI-GVITKLDIMD 232 (728)
Q Consensus 215 d~~~~rti-~VltK~D~~~ 232 (728)
...+.+.+ +|+||+|+++
T Consensus 124 ~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 124 RQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHcCCCEEEEEEeecCCcc
Confidence 55677876 6899999985
No 231
>PTZ00258 GTP-binding protein; Provisional
Probab=98.58 E-value=3.2e-07 Score=100.16 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEE
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALM 86 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~ 86 (728)
..-.+|++||.+|+|||||+|+|+|..........||+-|....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 45568999999999999999999998753334456888887654
No 232
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.58 E-value=2.3e-07 Score=93.05 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||-. .+..+...|++.++++|+|+...+ ..+-. .++..+++.. .+.++|+|.||+
T Consensus 45 ~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~ilV~D~t~-~~S~~~i~~w~~~i~~~~-~~~piilvgNK~ 109 (200)
T smart00176 45 RFNVWDTAGQE-------------KFGGLRDGYYIQGQCAIIMFDVTA-RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 109 (200)
T ss_pred EEEEEECCCch-------------hhhhhhHHHhcCCCEEEEEEECCC-hHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 58999999943 456777889999997766664433 22111 2333344443 368999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 110 Dl~~ 113 (200)
T smart00176 110 DVKD 113 (200)
T ss_pred cccc
Confidence 9854
No 233
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.56 E-value=2.2e-07 Score=92.92 Aligned_cols=65 Identities=23% Similarity=0.121 Sum_probs=41.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.||||+|... .+...|++.++++||++...+.. +.+. .+...++...+ ..++|+|.||+
T Consensus 67 ~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~ 130 (195)
T cd01873 67 SLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKL 130 (195)
T ss_pred EEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEch
Confidence 589999999531 12234889999777776544322 1211 13334444433 57999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 131 DL~~ 134 (195)
T cd01873 131 DLRY 134 (195)
T ss_pred hccc
Confidence 9965
No 234
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.56 E-value=2.6e-07 Score=96.60 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEE
Q 045702 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALM 86 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~ 86 (728)
|++||.+|||||||+|+|+|..........||+-|....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~ 39 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGI 39 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeee
Confidence 579999999999999999999863333456887776543
No 235
>PRK13351 elongation factor G; Reviewed
Probab=98.55 E-value=4.5e-07 Score=107.83 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
....|+|+|..++|||||+++|+...- ...+ ...+ . .|....|+......
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g------~~~~-~~~v-----~----------------~~~~~~d~~~~e~~-- 56 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTG------KIHK-MGEV-----E----------------DGTTVTDWMPQEQE-- 56 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcC------Cccc-cccc-----c----------------CCcccCCCCHHHHh--
Confidence 356899999999999999999985321 0000 0000 0 01122222221110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+..+......+++. ...+.||||||.. .+...+..+++..|++||++ ++..+..
T Consensus 57 --------r~~ti~~~~~~~~~~---~~~i~liDtPG~~-------------df~~~~~~~l~~aD~~ilVv-d~~~~~~ 111 (687)
T PRK13351 57 --------RGITIESAATSCDWD---NHRINLIDTPGHI-------------DFTGEVERSLRVLDGAVVVF-DAVTGVQ 111 (687)
T ss_pred --------cCCCcccceEEEEEC---CEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEEEE-eCCCCCC
Confidence 111222333344432 2368999999965 23356788999999666555 5554444
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+. ..+++.+...+.|.++|+||+|+...
T Consensus 112 ~~~-~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 112 PQT-ETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHH-HHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 333 55666666678999999999999864
No 236
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.55 E-value=5.4e-08 Score=88.67 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|+|+.+|||||||++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 599999999999999999999875
No 237
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.55 E-value=4e-07 Score=96.14 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=61.4
Q ss_pred CeEEEeCCCCcccCCCCC-chhHHHHHHHHHHHHhhcC--------------CeEEEEEecCCCCcccHHHHHHHHHhCC
Q 045702 152 NMTLVDLPGITKVPVGDQ-PTDIEARIRKMIMAYIRQE--------------NCIILAVSPANSDLATSDALQMAREADP 216 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~-~~~~~~~~~~~~~~yi~~~--------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 216 (728)
+|++|||||+.+.-.... -.-+...+.+....|+.+. |++++++-|....+...| +.+++++..
T Consensus 83 ~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D-Ie~Mk~ls~ 161 (373)
T COG5019 83 NLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD-IEAMKRLSK 161 (373)
T ss_pred EEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH-HHHHHHHhc
Confidence 699999999975422211 1345566777777777643 466667777788888888 888888886
Q ss_pred CCCceEEeeccCCCCCCCcc
Q 045702 217 TGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 217 ~~~rti~VltK~D~~~~~~~ 236 (728)
....|-||.|+|.+...+.
T Consensus 162 -~vNlIPVI~KaD~lT~~El 180 (373)
T COG5019 162 -RVNLIPVIAKADTLTDDEL 180 (373)
T ss_pred -ccCeeeeeeccccCCHHHH
Confidence 5899999999999986654
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.54 E-value=4.6e-07 Score=100.58 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=50.9
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA 214 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~ 214 (728)
+++.+...+.+... ...++||||||.. +.+..+ ...+..+|.++| |+++..+...++ .+.+..+
T Consensus 60 G~Ti~~~~~~~~~~-~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~~il-Vvda~~g~~~qt-~e~l~~~ 123 (394)
T TIGR00485 60 GITINTAHVEYETE-NRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAIL-VVSATDGPMPQT-REHILLA 123 (394)
T ss_pred CcceeeEEEEEcCC-CEEEEEEECCchH------------HHHHHH-HHHHhhCCEEEE-EEECCCCCcHHH-HHHHHHH
Confidence 44555555555443 2368999999953 233344 334567885555 555665554444 4555555
Q ss_pred CCCCCceE-EeeccCCCCCC
Q 045702 215 DPTGSRTI-GVITKLDIMDR 233 (728)
Q Consensus 215 d~~~~rti-~VltK~D~~~~ 233 (728)
...+.+.+ +|+||+|+.+.
T Consensus 124 ~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 124 RQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHcCCCEEEEEEEecccCCH
Confidence 55567765 68999999863
No 239
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=7.7e-07 Score=88.03 Aligned_cols=83 Identities=23% Similarity=0.406 Sum_probs=57.7
Q ss_pred CeEEEeCCCCcccCCCCCc-hhHHHHHHHHHHHHhhcC--------------CeEEEEEecCCCCcccHHHHHHHHHhCC
Q 045702 152 NMTLVDLPGITKVPVGDQP-TDIEARIRKMIMAYIRQE--------------NCIILAVSPANSDLATSDALQMAREADP 216 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~-~~~~~~~~~~~~~yi~~~--------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 216 (728)
+|++|||||+.+--..+.. +-+...+.+.-.+|+++. +|+++++-+....+..-| ..+++.+..
T Consensus 105 kltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt~ 183 (336)
T KOG1547|consen 105 KLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLTE 183 (336)
T ss_pred EEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHhh
Confidence 6899999999644222211 345666777777777643 566777777777777777 677777764
Q ss_pred CCCceEEeeccCCCCCCCcc
Q 045702 217 TGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 217 ~~~rti~VltK~D~~~~~~~ 236 (728)
-..++-||-|.|.+.-.+.
T Consensus 184 -vvNvvPVIakaDtlTleEr 202 (336)
T KOG1547|consen 184 -VVNVVPVIAKADTLTLEER 202 (336)
T ss_pred -hheeeeeEeecccccHHHH
Confidence 4789999999999865443
No 240
>PTZ00416 elongation factor 2; Provisional
Probab=98.52 E-value=3.7e-07 Score=110.13 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=49.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++|+||||..+ +..+ +...+...|++|+ |+++..++..++ ..+++.+...+.+.|+|+||+|+.
T Consensus 93 ~i~liDtPG~~~------------f~~~-~~~al~~~D~ail-Vvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVD------------FSSE-VTAALRVTDGALV-VVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHh------------HHHH-HHHHHhcCCeEEE-EEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhhh
Confidence 489999999762 2222 4667888995555 556767777666 677888877789999999999997
No 241
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.52 E-value=6.4e-07 Score=91.66 Aligned_cols=66 Identities=15% Similarity=0.341 Sum_probs=43.8
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLD 229 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 229 (728)
..++++||||.. .. +...++.+| ++++|+++..++..++ ..++..+...+.+ +|+|+||+|
T Consensus 83 ~~i~~vDtPg~~---------------~~-~l~~ak~aD-vVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~D 144 (225)
T cd01882 83 RRLTFIECPNDI---------------NA-MIDIAKVAD-LVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHLD 144 (225)
T ss_pred ceEEEEeCCchH---------------HH-HHHHHHhcC-EEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEeccc
Confidence 358999999832 11 123357788 6666677776666655 5566666555666 456999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
++...
T Consensus 145 ~~~~~ 149 (225)
T cd01882 145 LFKKN 149 (225)
T ss_pred cCCcH
Confidence 98543
No 242
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.51 E-value=6.3e-07 Score=96.76 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=32.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEE
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALM 86 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~ 86 (728)
.+|++||.+|+|||||+|+|+|... .+++ ..||+-|....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~ 43 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGV 43 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEE
Confidence 5799999999999999999999884 4433 46888886543
No 243
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.7e-07 Score=95.79 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=60.3
Q ss_pred CeEEEeCCCCcccCCCCC-chhHHHHHHHHHHHHhhcC-------------CeEEEEEecCCCCcccHHHHHHHHHhCCC
Q 045702 152 NMTLVDLPGITKVPVGDQ-PTDIEARIRKMIMAYIRQE-------------NCIILAVSPANSDLATSDALQMAREADPT 217 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~-~~~~~~~~~~~~~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~l~~~~d~~ 217 (728)
+||+|||||+.+.-.... -.-+...+......|+..+ ||.++++.|....+..-| ..+++.+..
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~- 157 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK- 157 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc-
Confidence 699999999975522111 1234455666667776543 566777778888888888 778888875
Q ss_pred CCceEEeeccCCCCCCCcc
Q 045702 218 GSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 218 ~~rti~VltK~D~~~~~~~ 236 (728)
..++|-||.|.|.+.+.+.
T Consensus 158 ~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 158 KVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred cccccceeeccccCCHHHH
Confidence 6899999999999987654
No 244
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.48 E-value=2.9e-06 Score=81.31 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=90.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..-..|+|+|.+++||+|++.+++-.. +++-....+..-.. ++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k------------------------~k------------ 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGK------------------------GK------------ 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeeccccccccc------------------------cc------------
Confidence 445689999999999999999999775 23221111111000 00
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
....++-+.-.+++.+- ..+.|+||||- .+++-|+.-+.+.+..+|++|.++. +.
T Consensus 51 ---------r~tTva~D~g~~~~~~~--~~v~LfgtPGq-------------~RF~fm~~~l~~ga~gaivlVDss~-~~ 105 (187)
T COG2229 51 ---------RPTTVAMDFGSIELDED--TGVHLFGTPGQ-------------ERFKFMWEILSRGAVGAIVLVDSSR-PI 105 (187)
T ss_pred ---------cceeEeecccceEEcCc--ceEEEecCCCc-------------HHHHHHHHHHhCCcceEEEEEecCC-Cc
Confidence 00111111122222221 24899999993 3677888889999988887776553 22
Q ss_pred ccHHHHHHHHHhCCCC-CceEEeeccCCCCCCCcc--HHHhHcCCCcccCCceeEeecC
Q 045702 203 ATSDALQMAREADPTG-SRTIGVITKLDIMDRGTN--ACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~r 258 (728)
.- .+..++..+.... .|.++.+||.|+.+.... ..+++.-.. +.++.++...+
T Consensus 106 ~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~ 161 (187)
T COG2229 106 TF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDAT 161 (187)
T ss_pred ch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecc
Confidence 22 4466666666544 899999999999986443 224544432 34455555444
No 245
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.48 E-value=6.8e-07 Score=108.05 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=49.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||.. +++.+ +...++.+|+.||+| +|..++..+. ..+++.+...+.++|+++||+|+.
T Consensus 99 ~inliDtPGh~------------dF~~e-~~~al~~~D~ailVv-da~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHV------------DFSSE-VTAALRITDGALVVV-DCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHH------------HHHHH-HHHHHhhcCEEEEEE-ECCCCCcccH-HHHHHHHHHCCCCEEEEEECCccc
Confidence 57999999965 23434 356678899665555 4666776665 677888888889999999999998
No 246
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.8e-06 Score=79.09 Aligned_cols=122 Identities=18% Similarity=0.306 Sum_probs=86.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-|..||+||..++||+-|+..++.-- +|-|.|.+--+--.|.
T Consensus 6 flfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmik------------------------------------- 47 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIK------------------------------------- 47 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEE-------------------------------------
Confidence 46789999999999999999998664 4766654332221111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-c
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-L 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~ 202 (728)
.+++.+.. ..|.+|||.| ++.++.++.+|.+.++++||+..-.-+. +
T Consensus 48 ------------------tvev~gek-iklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsf 95 (213)
T KOG0095|consen 48 ------------------TVEVNGEK-IKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSF 95 (213)
T ss_pred ------------------EEEECCeE-EEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcch
Confidence 12222211 1589999999 4589999999999999999887533222 1
Q ss_pred -ccHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 203 -ATSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 -~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
.-.+|+.-+.++.....-.|+|-||+|+.++.+
T Consensus 96 dclpewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 96 DCLPEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred hhhHHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 234667777777766677899999999987643
No 247
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.47 E-value=8.1e-07 Score=105.81 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=47.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..+.||||||..+- ...+..++..+|++|+++ ++..++..+. ..+++.+...+.+.++|+||+|.
T Consensus 86 ~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVv-da~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 86 YLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVV-CAVEGVMPQT-ETVLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred eEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEE-ecCCCCCccH-HHHHHHHHHcCCCEEEEEEChhc
Confidence 36899999998631 234677889999666555 5555554443 55666655556788999999999
Q ss_pred CC
Q 045702 231 MD 232 (728)
Q Consensus 231 ~~ 232 (728)
..
T Consensus 151 ~~ 152 (720)
T TIGR00490 151 LI 152 (720)
T ss_pred cc
Confidence 74
No 248
>PLN00023 GTP-binding protein; Provisional
Probab=98.45 E-value=8.6e-07 Score=93.93 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc--cHHHHHHHHHhCC------------C
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA--TSDALQMAREADP------------T 217 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~------------~ 217 (728)
.+.||||+|-- .++.+...|++.++++|+|+...+...- -..++..+..... .
T Consensus 84 ~LqIWDTAGqE-------------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 84 FVELWDVSGHE-------------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred EEEEEECCCCh-------------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 47899999932 5567888899999977777754442211 1112222333211 1
Q ss_pred CCceEEeeccCCCCC
Q 045702 218 GSRTIGVITKLDIMD 232 (728)
Q Consensus 218 ~~rti~VltK~D~~~ 232 (728)
..++|+|.||+|+..
T Consensus 151 ~ipIILVGNK~DL~~ 165 (334)
T PLN00023 151 PVPYIVIGNKADIAP 165 (334)
T ss_pred CCcEEEEEECccccc
Confidence 368999999999964
No 249
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.44 E-value=1e-06 Score=105.21 Aligned_cols=134 Identities=14% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
....|+|+|..++|||||+++|+... |..++.- . .+....|+.+...+
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~----------------g~~~~~D~~~~E~~-- 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------A----------------GEQLALDFDEEEQA-- 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------c----------------CcceecCccHHHHH--
Confidence 45679999999999999999998532 1111100 0 01122333322111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecC-CCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSP-NVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p-~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
. +-.+....+.+.+... ....++||||||..+ +...+...+...|++|+ |+++..++
T Consensus 67 r--------giTi~~~~~~~~~~~~~~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~avl-Vvda~~g~ 124 (731)
T PRK07560 67 R--------GITIKAANVSMVHEYEGKEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIV-VVDAVEGV 124 (731)
T ss_pred h--------hhhhhccceEEEEEecCCcEEEEEEcCCCccC-------------hHHHHHHHHHhcCEEEE-EEECCCCC
Confidence 0 1112222333433222 223689999999762 22356777889996655 44565565
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+. ..+++.+...+.+.|+++||+|+..
T Consensus 125 ~~~t-~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 125 MPQT-ETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred CccH-HHHHHHHHHcCCCeEEEEECchhhc
Confidence 5544 5566655555678899999999874
No 250
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.43 E-value=8.5e-07 Score=87.94 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|+|+.++|||||+++|++..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986554
No 251
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.43 E-value=8.6e-07 Score=98.78 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=40.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-ccHHHHHHHHHhCCC-CCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-ATSDALQMAREADPT-GSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~~~~l~l~~~~d~~-~~rti~VltK~D 229 (728)
.++||||||.. ... ..+..++..+|.+||+ ++++... ..+. .+.+..+... ..+.++|+||+|
T Consensus 81 ~i~liDtPGh~------------~f~-~~~~~g~~~aD~aIlV-VDa~~g~~~~qt-~e~l~~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 81 RVSFVDAPGHE------------TLM-ATMLSGAALMDGALLV-IAANEPCPQPQT-KEHLMALEIIGIKNIVIVQNKID 145 (406)
T ss_pred EEEEEECCCHH------------HHH-HHHHHHHHHCCEEEEE-EECCCCccccch-HHHHHHHHHcCCCeEEEEEEccc
Confidence 58999999943 233 3445667788955554 4555443 2222 2222233222 356899999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 146 l~~~ 149 (406)
T TIGR03680 146 LVSK 149 (406)
T ss_pred cCCH
Confidence 9864
No 252
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.39 E-value=4.6e-07 Score=93.88 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
-++++||.+|+|||||||+|+|.+-
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc
Confidence 4899999999999999999999874
No 253
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.38 E-value=1.6e-06 Score=95.63 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=32.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEE
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLAL 85 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i 85 (728)
.+|++||.+|+|||||+|+|++..+.......||+-|+..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g 41 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVG 41 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeee
Confidence 4799999999999999999999886333445688888764
No 254
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.37 E-value=1.5e-06 Score=85.25 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=47.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-C---CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-D---PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~VltK 227 (728)
.++++|++|-. .++.+...|++..+++|++|..++.+ .-.++...+..+ . -.+.|+++++||
T Consensus 59 ~~~~~d~gG~~-------------~~~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~~~L~~ll~~~~~~~~piLIl~NK 124 (175)
T PF00025_consen 59 SLTIWDLGGQE-------------SFRPLWKSYFQNADGIIFVVDSSDPE-RLQEAKEELKELLNDPELKDIPILILANK 124 (175)
T ss_dssp EEEEEEESSSG-------------GGGGGGGGGHTTESEEEEEEETTGGG-GHHHHHHHHHHHHTSGGGTTSEEEEEEES
T ss_pred EEEEEeccccc-------------cccccceeeccccceeEEEEecccce-eecccccchhhhcchhhcccceEEEEecc
Confidence 58999999943 34567788999999777777665433 233334333332 2 247899999999
Q ss_pred CCCCCCCc
Q 045702 228 LDIMDRGT 235 (728)
Q Consensus 228 ~D~~~~~~ 235 (728)
.|+.+.-.
T Consensus 125 ~D~~~~~~ 132 (175)
T PF00025_consen 125 QDLPDAMS 132 (175)
T ss_dssp TTSTTSST
T ss_pred ccccCcch
Confidence 99976443
No 255
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.37 E-value=1.2e-06 Score=98.37 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=47.7
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC--cccH--HHHHH
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD--LATS--DALQM 210 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d--~~~~--~~l~l 210 (728)
+++.+.....+...+ ..++||||||.. ..+. .+..++..+|++||+|...... ...+ +.+.+
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~-~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~ 135 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIK-NMITGASQADAAVLVVAVGDGEFEVQPQTREHAFL 135 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH------------HHHH-HHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHH
Confidence 455555544554443 378999999932 2333 3344678899666665544321 2222 22234
Q ss_pred HHHhCCCCCceEEeeccCCCCC
Q 045702 211 AREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 211 ~~~~d~~~~rti~VltK~D~~~ 232 (728)
++.+. ..++|+|+||+|+.+
T Consensus 136 ~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 136 ARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHcC--CCeEEEEEEChhccC
Confidence 44443 257889999999975
No 256
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.8e-07 Score=86.48 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=52.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhCCC---CCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREADPT---GSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~---~~rti~V 224 (728)
.+.+|||.|-- ++..+.--|++.++++|++.. +++.+.+ ..++++... ..-+.+|
T Consensus 55 kfeIWDTAGQE-------------Ry~slapMYyRgA~AAivvYD-----it~~~SF~~aK~WvkeL~~~~~~~~vialv 116 (200)
T KOG0092|consen 55 KFEIWDTAGQE-------------RYHSLAPMYYRGANAAIVVYD-----ITDEESFEKAKNWVKELQRQASPNIVIALV 116 (200)
T ss_pred EEEEEEcCCcc-------------cccccccceecCCcEEEEEEe-----cccHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 47899999943 566777889999997777773 3334433 344444332 2334469
Q ss_pred eccCCCCCCCcc----HHHhHcCCCcccCCceeEeecCChh
Q 045702 225 ITKLDIMDRGTN----ACNFLLGKVVPLRLGYVGVVNRSQE 261 (728)
Q Consensus 225 ltK~D~~~~~~~----~~~~l~~~~~~l~~g~~~v~~rs~~ 261 (728)
.||+|+...... +..+... -++-|+-.+.....
T Consensus 117 GNK~DL~~~R~V~~~ea~~yAe~----~gll~~ETSAKTg~ 153 (200)
T KOG0092|consen 117 GNKADLLERREVEFEEAQAYAES----QGLLFFETSAKTGE 153 (200)
T ss_pred cchhhhhhcccccHHHHHHHHHh----cCCEEEEEeccccc
Confidence 999999974332 1233333 23455555555443
No 257
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.35 E-value=1.4e-06 Score=85.23 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
..+|+|+|.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 3589999999999999999999987655543
No 258
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=6.3e-07 Score=86.31 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=25.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
..|+++|.+|+|||||+|+|.|...++++.
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 368899999999999999999987655433
No 259
>PRK12740 elongation factor G; Reviewed
Probab=98.32 E-value=2.8e-06 Score=100.94 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=48.3
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+ +...+..++..+|.+|++ ++++.+...+. ..+++.+...+.+.++|+||+|+
T Consensus 60 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD~vllv-vd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 60 HKINLIDTPGHVD-------------FTGEVERALRVLDGAVVV-VCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHhCeEEEE-EeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 3699999999651 234566788899955555 45555554443 55666666668999999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 125 ~~~~ 128 (668)
T PRK12740 125 AGAD 128 (668)
T ss_pred CCCC
Confidence 8643
No 260
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.32 E-value=1.3e-06 Score=85.26 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=62.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
-|.|+++|..+||||+|+..|+...+. .++|.......+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~~~~----------------------------------- 43 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIAYNV----------------------------------- 43 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEECCG-----------------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCceEEe-----------------------------------
Confidence 478999999999999999999976542 23333321111000
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHH--HhhcCCeEEEEEecCCCCc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMA--YIRQENCIILAVSPANSDL 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~--yi~~~~~iIL~V~~a~~d~ 202 (728)
..+....+.|||+||..+.. ..+... |+....+||++|.++...-
T Consensus 44 ---------------------~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~ 90 (181)
T PF09439_consen 44 ---------------------NNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQK 90 (181)
T ss_dssp ---------------------SSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHH
T ss_pred ---------------------ecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchh
Confidence 01111258999999976542 122222 6888888887777653111
Q ss_pred ccHHHHHH----H--HHhCCCCCceEEeeccCCCCCC
Q 045702 203 ATSDALQM----A--READPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~~l~l----~--~~~d~~~~rti~VltK~D~~~~ 233 (728)
.-.++-++ + ....+.+.|+++++||.|+...
T Consensus 91 ~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 91 ELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 11111111 1 1224678999999999999763
No 261
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.31 E-value=3.5e-06 Score=81.27 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
+|+|||+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 699999999999999999887765
No 262
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.29 E-value=4.7e-06 Score=92.88 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-.|+|+|..++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 36999999999999999999875
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.29 E-value=2.1e-06 Score=76.75 Aligned_cols=28 Identities=32% Similarity=0.608 Sum_probs=25.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
.+|++||..++||+||.++|-|.+.+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk 29 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK 29 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc
Confidence 4799999999999999999999998765
No 264
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.29 E-value=1.8e-06 Score=80.27 Aligned_cols=116 Identities=23% Similarity=0.259 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-...|.+||+.++||||||-.++...|-|-. .|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~---~~tI------------------------------------------ 44 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH---PTTI------------------------------------------ 44 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC---Ccee------------------------------------------
Confidence 3468999999999999999999987763211 1100
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL- 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~- 202 (728)
++...+-.+.|.+..+ .|.||||.| ++.++.++-+|.+.+..+||+..-...|.
T Consensus 45 -----------GvDFkvk~m~vdg~~~-KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf 99 (209)
T KOG0080|consen 45 -----------GVDFKVKVMQVDGKRL-KLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTF 99 (209)
T ss_pred -----------eeeEEEEEEEEcCceE-EEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhH
Confidence 1111222333333332 589999999 45889999999999999998886544332
Q ss_pred ccHHHHHHHHHhCCC----CCceEEeeccCCCC
Q 045702 203 ATSDALQMAREADPT----GSRTIGVITKLDIM 231 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~----~~rti~VltK~D~~ 231 (728)
.+- -.++++++.. ..-.++|-||+|.-
T Consensus 100 ~kL--d~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 100 VKL--DIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HhH--HHHHHHHHhhcCCccHhHhhhcccccch
Confidence 222 2355666542 23356899999964
No 265
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.28 E-value=1.4e-06 Score=83.67 Aligned_cols=42 Identities=31% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceE
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLA 84 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~ 84 (728)
...++|+++|.+|+|||||+|+|+|....+++.+ .+|+.+..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~ 140 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE 140 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE
Confidence 3567899999999999999999999765555444 45555533
No 266
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.27 E-value=5.6e-06 Score=77.22 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=83.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccC-CCCcccChHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL-PGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~-~g~~~~d~~~i~~~i~~ 124 (728)
.+++|||+.-+||||||..++.-+| |-- +-||+. -+-|+..+.. ||..
T Consensus 9 frlivigdstvgkssll~~ft~gkf-ael-----sdptvg------------vdffarlie~~pg~r------------- 57 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF-AEL-----SDPTVG------------VDFFARLIELRPGYR------------- 57 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc-ccc-----CCCccc------------hHHHHHHHhcCCCcE-------------
Confidence 4789999999999999999998776 211 122211 0122221111 1211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A 203 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~ 203 (728)
..|.||||.| ++.++.++++|.+++-.++|+..-.|..- .
T Consensus 58 --------------------------iklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfe 98 (213)
T KOG0091|consen 58 --------------------------IKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFE 98 (213)
T ss_pred --------------------------EEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHH
Confidence 2589999999 46899999999999986666664333211 1
Q ss_pred -cHHHHHHHHHh-C-CCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChh
Q 045702 204 -TSDALQMAREA-D-PTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQE 261 (728)
Q Consensus 204 -~~~~l~l~~~~-d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~ 261 (728)
-.+++.-|+.. . |...-..+|-+|+|+........+-.+.-....++-|+-.+.++.-
T Consensus 99 hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 99 HVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGC 159 (213)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCC
Confidence 11233333332 2 5545566899999998644322211111112345556666666543
No 267
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=3.8e-06 Score=80.25 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhh-hccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAE-FRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~-~~~~~g~~~~d~~~i~~~i 122 (728)
-+..++++|+.++|||.||-.++...|.|... ..+= .+|+. .++.+++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-----~TiG--------------vefg~r~~~id~k------------ 53 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-----LTIG--------------VEFGARMVTIDGK------------ 53 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-----ceee--------------eeeceeEEEEcCc------------
Confidence 35578999999999999999999999966533 0000 01110 0011111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.| .|.+|||.|- +.++.++.+|.+.+...||+..-.+.+.
T Consensus 54 -----------------~I----------KlqiwDtaGq-------------e~frsv~~syYr~a~GalLVydit~r~s 93 (216)
T KOG0098|consen 54 -----------------QI----------KLQIWDTAGQ-------------ESFRSVTRSYYRGAAGALLVYDITRRES 93 (216)
T ss_pred -----------------eE----------EEEEEecCCc-------------HHHHHHHHHHhccCcceEEEEEccchhh
Confidence 11 4899999993 4788999999999998888885444333
Q ss_pred cc--HHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 203 AT--SDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 ~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
-+ ..++.=+++......-++++-||+|+.....
T Consensus 94 F~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~ 128 (216)
T KOG0098|consen 94 FNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE 128 (216)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc
Confidence 22 2244555666545678889999999987553
No 268
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.26 E-value=9.1e-06 Score=82.42 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=39.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||-. ....+...|+...+++|+++. .+...+-.. +...+.... ...++++|.||+
T Consensus 59 ~i~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~ 123 (215)
T PTZ00132 59 CFNVWDTAGQE-------------KFGGLRDGYYIKGQCAIIMFD-VTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKV 123 (215)
T ss_pred EEEEEECCCch-------------hhhhhhHHHhccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 47899999943 234455678888886666554 332222112 112222222 357888999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 124 Dl~~ 127 (215)
T PTZ00132 124 DVKD 127 (215)
T ss_pred cCcc
Confidence 9864
No 269
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.24 E-value=4.9e-06 Score=76.30 Aligned_cols=70 Identities=26% Similarity=0.330 Sum_probs=52.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---ccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---ATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++|+||-. .++.|...|.+..++|+++|.+|..+- +.++-..++.+-.-.|.|.++.-||.
T Consensus 66 tiklwD~gGq~-------------rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~ 132 (186)
T KOG0075|consen 66 TIKLWDLGGQP-------------RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKI 132 (186)
T ss_pred EEEEEecCCCc-------------cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccc
Confidence 36899999944 678999999999998888887776432 23333345554455789999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+.-
T Consensus 133 d~~~AL 138 (186)
T KOG0075|consen 133 DLPGAL 138 (186)
T ss_pred cCcccc
Confidence 997643
No 270
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.21 E-value=2.4e-06 Score=80.72 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.++++|.+|+|||||+|+|+|..+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999999875
No 271
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.21 E-value=1e-05 Score=83.73 Aligned_cols=128 Identities=24% Similarity=0.306 Sum_probs=83.7
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
..+.|.|+|||..||||||||++|++..++|.+.-..|--||.- ..+.|.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h------------------~a~Lps------------ 224 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH------------------SAHLPS------------ 224 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh------------------hccCCC------------
Confidence 57899999999999999999999999999888765555444320 001111
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
..-..+.||=||++ +-|..+.+.++ -+..-+..+| +||-|++.+.+
T Consensus 225 ----------------------------g~~vlltDTvGFis----dLP~~LvaAF~-ATLeeVaead-lllHvvDiShP 270 (410)
T KOG0410|consen 225 ----------------------------GNFVLLTDTVGFIS----DLPIQLVAAFQ-ATLEEVAEAD-LLLHVVDISHP 270 (410)
T ss_pred ----------------------------CcEEEEeechhhhh----hCcHHHHHHHH-HHHHHHhhcc-eEEEEeecCCc
Confidence 11368999999983 23445555554 3455677888 66666555444
Q ss_pred cccH---HHHHHHHHhCC----CCCceEEeeccCCCCCC
Q 045702 202 LATS---DALQMAREADP----TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~---~~l~l~~~~d~----~~~rti~VltK~D~~~~ 233 (728)
.+.+ +.+..++.++- ...+.|-|=||+|....
T Consensus 271 ~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 271 NAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred cHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 3332 34566666653 34567777888887653
No 272
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.20 E-value=4.3e-06 Score=94.03 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=46.1
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-------ccHHH
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-------ATSDA 207 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-------~~~~~ 207 (728)
+++.+.-...+... ...++||||||.. +++.++ ..-+..+|.+||+| ++..+. ..+.
T Consensus 70 GiTid~~~~~~~~~-~~~i~lIDtPGh~------------~f~~~~-~~g~~~aD~ailVV-da~~G~~e~~~~~~~qT- 133 (446)
T PTZ00141 70 GITIDIALWKFETP-KYYFTIIDAPGHR------------DFIKNM-ITGTSQADVAILVV-ASTAGEFEAGISKDGQT- 133 (446)
T ss_pred CEeEEeeeEEEccC-CeEEEEEECCChH------------HHHHHH-HHhhhhcCEEEEEE-EcCCCceecccCCCccH-
Confidence 34433333333332 2368999999943 244444 34467889666655 555443 1222
Q ss_pred HHHHHHhCCCCCc-eEEeeccCCCC
Q 045702 208 LQMAREADPTGSR-TIGVITKLDIM 231 (728)
Q Consensus 208 l~l~~~~d~~~~r-ti~VltK~D~~ 231 (728)
.+.+..+...|.+ .|+|+||+|..
T Consensus 134 ~eh~~~~~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 134 REHALLAFTLGVKQMIVCINKMDDK 158 (446)
T ss_pred HHHHHHHHHcCCCeEEEEEEccccc
Confidence 4444444445655 67999999953
No 273
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=4.5e-06 Score=81.56 Aligned_cols=119 Identities=19% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-+..||++|++++|||-||..++...|.+ -++.++-+.+... .....|+.+
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~-----~SksTIGvef~t~-------------t~~vd~k~v----------- 63 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----ESKSTIGVEFATR-------------TVNVDGKTV----------- 63 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCc-----ccccceeEEEEee-------------ceeecCcEE-----------
Confidence 47789999999999999999999888733 2222221111000 000111111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-c
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-L 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~ 202 (728)
...||||.| +++.+.++..|.+.+...+|+..-.... +
T Consensus 64 ----------------------------kaqIWDTAG-------------QERyrAitSaYYrgAvGAllVYDITr~~Tf 102 (222)
T KOG0087|consen 64 ----------------------------KAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDITRRQTF 102 (222)
T ss_pred ----------------------------EEeeecccc-------------hhhhccccchhhcccceeEEEEechhHHHH
Confidence 468999999 4578889999999999877777433211 1
Q ss_pred -ccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 203 -ATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 -~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
.-..|+.-++.......++++|-||+||..
T Consensus 103 env~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 103 ENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 112244445555555788999999999976
No 274
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.15 E-value=0.00013 Score=78.01 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 275
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.14 E-value=1.1e-05 Score=90.63 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=40.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.++|||+||.. ..++.|+. -+...|.++| |++|+.. ...+ +.+.++..+. -.+.|+|+||+
T Consensus 118 ~i~~IDtPGH~------------~fi~~m~~-g~~~~D~alL-VVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGHD------------ILMATMLN-GAAVMDAALL-LIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCHH------------HHHHHHHH-HHhhCCEEEE-EEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 58999999942 34555544 3567885555 5555543 2333 3333343333 24689999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99853
No 276
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=1.9e-05 Score=80.62 Aligned_cols=37 Identities=38% Similarity=0.408 Sum_probs=29.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC--CCCcccCC--cccccc
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR--DFLPRGCD--ICTRRP 82 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~--~~lP~~~~--~~Tr~p 82 (728)
.-.|+|+|.+++|||+|+|.|+|. .| +.+.+ .||+-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi 47 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGI 47 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccce
Confidence 446999999999999999999998 54 66655 566643
No 277
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.13 E-value=7.8e-06 Score=91.95 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=41.7
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc------cHHHHHHHHHhCCCCC-ceEE
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA------TSDALQMAREADPTGS-RTIG 223 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~------~~~~l~l~~~~d~~~~-rti~ 223 (728)
..++||||||.. +++. .+..++..+|+.||+|......+. .+. .+.+..+...|. +.|+
T Consensus 85 ~~i~liDtPGh~------------df~~-~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~gi~~iIV 150 (447)
T PLN00043 85 YYCTVIDAPGHR------------DFIK-NMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTLGVKQMIC 150 (447)
T ss_pred EEEEEEECCCHH------------HHHH-HHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHcCCCcEEE
Confidence 368999999943 2444 445667899977776654432121 222 333443434456 5688
Q ss_pred eeccCCCCC
Q 045702 224 VITKLDIMD 232 (728)
Q Consensus 224 VltK~D~~~ 232 (728)
|+||+|+.+
T Consensus 151 ~vNKmD~~~ 159 (447)
T PLN00043 151 CCNKMDATT 159 (447)
T ss_pred EEEcccCCc
Confidence 999999873
No 278
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.12 E-value=3.7e-06 Score=83.62 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=22.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.++++||.+|+|||||+|+|++...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 4799999999999999999998754
No 279
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.2e-05 Score=93.92 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=90.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
...-|.++|.--+|||||.++|+=.. |...+ +.++. .|.++.|+.+..++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~---------------------~g~~~~D~~e~Eqe-- 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH---------------------DGAATMDWMEQEQE-- 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc---------------------CCCccCCCcHHHHh--
Confidence 45679999999999999999998321 22222 11110 23345555544331
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+-.+....+.+.+.+ ...++||||||..+- ..-+.+.++-.|..| +|++|..+..
T Consensus 59 --------RGITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDgav-vVvdaveGV~ 114 (697)
T COG0480 59 --------RGITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDGAV-VVVDAVEGVE 114 (697)
T ss_pred --------cCCEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcceE-EEEECCCCee
Confidence 2334455566666665 336899999997732 233556677788544 4555666776
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
.|. ..++|+++..+.|.|+++||+|.+...-
T Consensus 115 ~QT-Etv~rqa~~~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 115 PQT-ETVWRQADKYGVPRILFVNKMDRLGADF 145 (697)
T ss_pred ecH-HHHHHHHhhcCCCeEEEEECccccccCh
Confidence 666 7788999999999999999999987554
No 280
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.07 E-value=7.1e-05 Score=80.46 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
...|.|.|.+|||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 281
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.07 E-value=1.4e-05 Score=84.38 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=25.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
..+|+|||.+|+|||||+|+|+|.....++.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 4579999999999999999999987644433
No 282
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=2.6e-05 Score=71.93 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=53.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc--cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA--TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.+|||.| ++.++.++++|.+.+...+|+....+.|-- -..|+.=++.+.+...-+|++-||-|
T Consensus 59 KLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkD 125 (214)
T KOG0086|consen 59 KLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKD 125 (214)
T ss_pred EEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhh
Confidence 589999999 468999999999999888888766555432 22355667777777777788889999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+-...
T Consensus 126 L~~~R 130 (214)
T KOG0086|consen 126 LDPER 130 (214)
T ss_pred cChhh
Confidence 96543
No 283
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.03 E-value=2.4e-05 Score=71.84 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=47.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc-HHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT-SDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.|+||.| .+.++.++..|.+.++.+|++..-.|.. +.| ..|++-++.-.+ ..+-++|-||.|
T Consensus 58 kLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d 123 (198)
T KOG0079|consen 58 KLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKND 123 (198)
T ss_pred EEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCC
Confidence 589999999 4689999999999999777776444322 122 123333333333 578899999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
..++.
T Consensus 124 ~~~Rr 128 (198)
T KOG0079|consen 124 DPERR 128 (198)
T ss_pred Cccce
Confidence 97643
No 284
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.02 E-value=3.4e-05 Score=72.41 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=48.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.|+++|.-|- ...++...+|....|++|+||.++ ....-++....++.+ .-.|.+.+++.||
T Consensus 61 ~L~iwDvGGq-------------~~lr~~W~nYfestdglIwvvDss-D~~r~~e~~~~L~~lL~eerlaG~~~Lvlank 126 (185)
T KOG0073|consen 61 TLNIWDVGGQ-------------KTLRSYWKNYFESTDGLIWVVDSS-DRMRMQECKQELTELLVEERLAGAPLLVLANK 126 (185)
T ss_pred EEEEEEcCCc-------------chhHHHHHHhhhccCeEEEEEECc-hHHHHHHHHHHHHHHHhhhhhcCCceEEEEec
Confidence 4899999983 367788999999999888888764 344444434433333 2357899999999
Q ss_pred CCCC
Q 045702 228 LDIM 231 (728)
Q Consensus 228 ~D~~ 231 (728)
.|+.
T Consensus 127 ~dl~ 130 (185)
T KOG0073|consen 127 QDLP 130 (185)
T ss_pred CcCc
Confidence 9997
No 285
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.96 E-value=1.2e-05 Score=85.51 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=25.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCccc
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG 74 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~ 74 (728)
..+|+|||.+|+|||||+|+|+|.....++
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~ 150 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTG 150 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccC
Confidence 458999999999999999999998754443
No 286
>PRK12288 GTPase RsgA; Reviewed
Probab=97.94 E-value=2.4e-05 Score=84.96 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
.++++|.+|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999987643
No 287
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.94 E-value=3.3e-05 Score=75.45 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCc
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLP 72 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP 72 (728)
.+.++++|.+|+|||||+|+|++..+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 4689999999999999999999987633
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.94 E-value=2.5e-05 Score=80.88 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
..++++|.+|+|||||||+|+|...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~ 146 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ 146 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc
Confidence 57999999999999999999987543
No 289
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=5.8e-05 Score=83.73 Aligned_cols=117 Identities=19% Similarity=0.301 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
...|-|+|+|.---||||||-.|=+-.+.+...|.-|--..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG--------------------------------------- 43 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG--------------------------------------- 43 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEee---------------------------------------
Confidence 56799999999999999999999887765554443332111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecC--CCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSP--NVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p--~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
...+..+ ..+.|+|+||||-- .+..|-.+=.+-+| |+++|++++.
T Consensus 44 -------------------A~~v~~~~~~~~~itFiDTPGHe-------------AFt~mRaRGa~vtD-IaILVVa~dD 90 (509)
T COG0532 44 -------------------AYQVPLDVIKIPGITFIDTPGHE-------------AFTAMRARGASVTD-IAILVVAADD 90 (509)
T ss_pred -------------------eEEEEeccCCCceEEEEcCCcHH-------------HHHHHHhcCCcccc-EEEEEEEccC
Confidence 1111111 33579999999932 34444444445667 5555666766
Q ss_pred CcccH--HHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 201 DLATS--DALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 201 d~~~~--~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.+-.| ++...++.. +.|+|+.+||+|+.+..
T Consensus 91 Gv~pQTiEAI~hak~a---~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 91 GVMPQTIEAINHAKAA---GVPIVVAINKIDKPEAN 123 (509)
T ss_pred CcchhHHHHHHHHHHC---CCCEEEEEecccCCCCC
Confidence 66544 455555554 68999999999999544
No 290
>PRK12289 GTPase RsgA; Reviewed
Probab=97.93 E-value=1.9e-05 Score=85.82 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
.++|+|.+|+|||||||+|+|...+.+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t 200 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV 200 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc
Confidence 589999999999999999998764433
No 291
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=8.1e-05 Score=82.02 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-..|-|.|+|.---||+|||.+|-+-.+.....|.-|--.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI---------------------------------------- 190 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI---------------------------------------- 190 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee----------------------------------------
Confidence 3568899999999999999999987776433333222111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
--..+.-|....+||.||||-. .+..|-.+=..-.| ||++|+.|..++
T Consensus 191 ------------------GAF~V~~p~G~~iTFLDTPGHa-------------AF~aMRaRGA~vtD-IvVLVVAadDGV 238 (683)
T KOG1145|consen 191 ------------------GAFTVTLPSGKSITFLDTPGHA-------------AFSAMRARGANVTD-IVVLVVAADDGV 238 (683)
T ss_pred ------------------ceEEEecCCCCEEEEecCCcHH-------------HHHHHHhccCcccc-EEEEEEEccCCc
Confidence 1122333344568999999943 44455444445566 777777777666
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
-.|. ++-++-....+.|+|+.+||+|....
T Consensus 239 mpQT-~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 239 MPQT-LEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred cHhH-HHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 5544 33333333446899999999997643
No 292
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=5.8e-05 Score=81.17 Aligned_cols=113 Identities=17% Similarity=0.300 Sum_probs=65.8
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC------cc--cHH
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD------LA--TSD 206 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d------~~--~~~ 206 (728)
+++-+.-......+. +.+||+|+||.. +++.+|+... +.+|+.||+|...... .. +.+
T Consensus 70 GvTi~~~~~~fet~k-~~~tIiDaPGHr------------dFvknmItGa-sqAD~aVLVV~a~~~efE~g~~~~gQtrE 135 (428)
T COG5256 70 GVTIDVAHSKFETDK-YNFTIIDAPGHR------------DFVKNMITGA-SQADVAVLVVDARDGEFEAGFGVGGQTRE 135 (428)
T ss_pred ceEEEEEEEEeecCC-ceEEEeeCCchH------------HHHHHhhcch-hhccEEEEEEECCCCccccccccCCchhH
Confidence 444444444444433 379999999933 4777777664 5677777777544331 22 334
Q ss_pred HHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCC--------Ccc-cCCceeEeecCChhhh
Q 045702 207 ALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGK--------VVP-LRLGYVGVVNRSQEDI 263 (728)
Q Consensus 207 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~--------~~~-l~~g~~~v~~rs~~~~ 263 (728)
-..|++.+. -...|+++||+|.++-..+.-+.+.++ .+. -...|++++.-+...+
T Consensus 136 H~~La~tlG--i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 136 HAFLARTLG--IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred HHHHHHhcC--CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcc
Confidence 445666665 578999999999998322211222211 111 1366777777665444
No 293
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.86 E-value=1.4e-05 Score=76.66 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
..++++|..|+|||||||+|++..-+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~ 61 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQ 61 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcch
Confidence 57999999999999999999987533
No 294
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.83 E-value=5.3e-05 Score=72.49 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=47.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEe-cCCCCcccHHH--HHHHHHhC---CCCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS-PANSDLATSDA--LQMAREAD---PTGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~-~a~~d~~~~~~--l~l~~~~d---~~~~rti~Vl 225 (728)
-|.+|||.| +++++.+-..+.+.+||.+|+.. +....+.+-+- -+++.+.+ |..=|.|++.
T Consensus 59 tlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 59 TLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred EEEEEeccc-------------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 489999999 35777777889999998888753 22223333221 24666665 4556899999
Q ss_pred ccCCCCCC
Q 045702 226 TKLDIMDR 233 (728)
Q Consensus 226 tK~D~~~~ 233 (728)
||+|+-..
T Consensus 126 NKiD~~~~ 133 (210)
T KOG0394|consen 126 NKIDVDGG 133 (210)
T ss_pred ccccCCCC
Confidence 99999763
No 295
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=2.5e-05 Score=84.08 Aligned_cols=25 Identities=36% Similarity=0.642 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
-++.|||-+|+|||||||+|+|...
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc
Confidence 3599999999999999999999885
No 296
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.81 E-value=5.4e-05 Score=75.59 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=53.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.|.|+||+|.. ....|-..|+...++.+++..-.+.. +=.++..+...+ +....|+++|.||
T Consensus 52 ~l~ilDt~g~~-------------~~~~~~~~~~~~~~gF~lVysitd~~-SF~~~~~l~~~I~r~~~~~~~PivlVGNK 117 (196)
T KOG0395|consen 52 MLEILDTAGQE-------------EFSAMRDLYIRNGDGFLLVYSITDRS-SFEEAKQLREQILRVKGRDDVPIILVGNK 117 (196)
T ss_pred EEEEEcCCCcc-------------cChHHHHHhhccCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCCEEEEEEc
Confidence 58899999922 33456678999999887776543321 111222222222 4445699999999
Q ss_pred CCCCCCCccHHHhHcCCCcccCCceeEeecCC
Q 045702 228 LDIMDRGTNACNFLLGKVVPLRLGYVGVVNRS 259 (728)
Q Consensus 228 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs 259 (728)
+|+........+-.+.-......+|+.++.+.
T Consensus 118 ~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~ 149 (196)
T KOG0395|consen 118 CDLERERQVSEEEGKALARSWGCAFIETSAKL 149 (196)
T ss_pred ccchhccccCHHHHHHHHHhcCCcEEEeeccC
Confidence 99987433222111111223445566655443
No 297
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.7e-05 Score=80.69 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=62.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.++.+||-+|+|||||+|||+....-+...-.||=-|.+-... .+ +.+....++.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~-v~---d~rl~~L~~~--------------------- 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVY-VP---DCRLDELAEI--------------------- 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEe-cC---chHHHHHHHh---------------------
Confidence 4689999999999999999998775444455688766543210 00 0000011100
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEe
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS 196 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~ 196 (728)
.+- ++. .++ ..+.|||.+|+...++.+. -..+....-|++.|+|+.+|.
T Consensus 58 ----~~c----~~k----~~~----~~ve~vDIAGLV~GAs~Ge------GLGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 58 ----VKC----PPK----IRP----APVEFVDIAGLVKGASKGE------GLGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred ----cCC----CCc----EEe----eeeEEEEecccCCCcccCC------CcchHHHHhhhhcCeEEEEEE
Confidence 000 000 011 1489999999998877654 344556677899996666653
No 298
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0001 Score=72.43 Aligned_cols=71 Identities=24% Similarity=0.424 Sum_probs=45.5
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh---cCCeEEEEEecCCCCcccHHHHHHHH----Hh--CCCCCceEE
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR---QENCIILAVSPANSDLATSDALQMAR----EA--DPTGSRTIG 223 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~----~~--d~~~~rti~ 223 (728)
++|||+||-. ..+.-...|++ ..-+||++|.++.-+-.-.++-+++- .. ...+.++++
T Consensus 84 ~~LVD~PGH~-------------rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI 150 (238)
T KOG0090|consen 84 VTLVDLPGHS-------------RLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI 150 (238)
T ss_pred eEEEeCCCcH-------------HHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 6999999955 44445556666 56667777777654433333323222 11 346789999
Q ss_pred eeccCCCCCCCcc
Q 045702 224 VITKLDIMDRGTN 236 (728)
Q Consensus 224 VltK~D~~~~~~~ 236 (728)
.+||-|+....+.
T Consensus 151 aCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 151 ACNKQDLFTAKTA 163 (238)
T ss_pred EecchhhhhcCcH
Confidence 9999999875543
No 299
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.79 E-value=9.3e-05 Score=80.22 Aligned_cols=40 Identities=23% Similarity=0.080 Sum_probs=30.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcc-cCCcccccceEE
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPR-GCDICTRRPLAL 85 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~-~~~~~Tr~p~~i 85 (728)
..+.+||-+|+|||||+|+|++...-+. ....||-.|..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g 43 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG 43 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCcee
Confidence 3589999999999999999999874143 334677777553
No 300
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.76 E-value=3.4e-05 Score=84.59 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
..++|||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 301
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.74 E-value=4.2e-05 Score=72.47 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=46.0
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH-HHHHHHhC--CCCCceEEeeccCC
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA-LQMAREAD--PTGSRTIGVITKLD 229 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~-l~l~~~~d--~~~~rti~VltK~D 229 (728)
+.+|||.|- +.+..++..|.+.+.+.+|++... |-..-++ +.+-+++. -...||++|-||+|
T Consensus 71 ~mlWdtagq-------------eEfDaItkAyyrgaqa~vLVFSTT--Dr~SFea~~~w~~kv~~e~~~IPtV~vqNKID 135 (246)
T KOG4252|consen 71 SMLWDTAGQ-------------EEFDAITKAYYRGAQASVLVFSTT--DRYSFEATLEWYNKVQKETERIPTVFVQNKID 135 (246)
T ss_pred HHHHHhccc-------------hhHHHHHHHHhccccceEEEEecc--cHHHHHHHHHHHHHHHHHhccCCeEEeeccch
Confidence 579999992 356678899999999877777533 3333222 23333332 24689999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+++..
T Consensus 136 lveds 140 (246)
T KOG4252|consen 136 LVEDS 140 (246)
T ss_pred hhHhh
Confidence 99754
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.73 E-value=0.00041 Score=76.89 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=46.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ..+-..+..+. + ...++ .+++|++|..+ +++...++.+......+-+|+||.|..
T Consensus 184 DvViIDTaGr~~~d-----~~lm~El~~i~-~-~~~p~-e~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 184 DIIIVDTSGRHKQE-----DSLFEEMLQVA-E-AIQPD-NIIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CEEEEECCCCCcch-----HHHHHHHHHHh-h-hcCCc-EEEEEeccccC---hhHHHHHHHHHhccCCcEEEEECccCC
Confidence 68999999965321 12222222222 1 23456 45566666543 455667777765556789999999998
Q ss_pred CCCccHH
Q 045702 232 DRGTNAC 238 (728)
Q Consensus 232 ~~~~~~~ 238 (728)
..+..+.
T Consensus 253 argG~aL 259 (429)
T TIGR01425 253 AKGGGAL 259 (429)
T ss_pred CCccHHh
Confidence 7765444
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.72 E-value=2.8e-05 Score=77.71 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-+|++||-+|+||||||..|++-.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 489999999999999999999754
No 304
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00027 Score=83.13 Aligned_cols=176 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCC---CCccchhhhccCCCCcccChHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPG---DDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~---~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-|++||.+|+||||.+.-|.+.-. ....+- .+-+........ ..-..|++....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~k------kV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGAD------QLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCCC------eEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 579999999999999999998631 221100 011111110000 0012333333333333345555554444
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
+.. + .++.||||||..... ..+.+....+.. ...++ -+++|.+++..
T Consensus 260 ~~~----~-------------------~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~-e~~LVLsAt~~-- 306 (767)
T PRK14723 260 ALG----D-------------------KHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPV-RRLLLLNAASH-- 306 (767)
T ss_pred Hhc----C-------------------CCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCC-eEEEEECCCCc--
Confidence 221 1 168999999976431 112222222211 22344 45566666532
Q ss_pred cHHHHHHHHHhCCCC--CceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 204 TSDALQMAREADPTG--SRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
..+..++++.+.... ..+=+|+||.|-...+-...+++... .+.+-|++.-.+=++|+.
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~--~lPI~yit~GQ~VPdDL~ 367 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRH--RLPVHYVSTGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHH--CCCeEEEecCCCChhhcc
Confidence 334344666665321 35678999999998776655544433 244567766655555554
No 305
>PRK13796 GTPase YqeH; Provisional
Probab=97.69 E-value=5.2e-05 Score=83.25 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|||.+|+|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 69999999999999999998653
No 306
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.68 E-value=0.00022 Score=79.46 Aligned_cols=119 Identities=24% Similarity=0.330 Sum_probs=72.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
-|||+||+.++||||||=+|++..|-| .+.-|.|-+. +|-
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i~---------------------IPa---------------- 49 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRIL---------------------IPA---------------- 49 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccc---cccccCCccc---------------------cCC----------------
Confidence 489999999999999999999998722 1222222111 000
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEec---CCCCc
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSP---ANSDL 202 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~---a~~d~ 202 (728)
.+ .|.....++|||+--. ..+..+.+-++.+|.|.++... .+.|-
T Consensus 50 ---------dv----------tPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~vi~lvyavd~~~T~D~ 97 (625)
T KOG1707|consen 50 ---------DV----------TPENVPTSIVDTSSDS-------------DDRLCLRKEIRKADVICLVYAVDDESTVDR 97 (625)
T ss_pred ---------cc----------CcCcCceEEEeccccc-------------chhHHHHHHHhhcCEEEEEEecCChHHhhh
Confidence 00 1122247999998321 1223345567888944443311 22333
Q ss_pred ccHHHHHHHHHhC--CCCCceEEeeccCCCCCCCcc
Q 045702 203 ATSDALQMAREAD--PTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 203 ~~~~~l~l~~~~d--~~~~rti~VltK~D~~~~~~~ 236 (728)
-..-|+-++++.. ....|+|+|-||+|.......
T Consensus 98 ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 98 ISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 4445677777765 236899999999999876544
No 307
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00029 Score=76.55 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=57.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
++.||||||..... . ..+.++ .+++. .++. +++|++|+ ...++....++.+.. -.-.=+|+||.|
T Consensus 322 DvVLIDTaGRs~kd-----~---~lm~EL-~~~lk~~~Pde-vlLVLsAT--tk~~d~~~i~~~F~~-~~idglI~TKLD 388 (436)
T PRK11889 322 DYILIDTAGKNYRA-----S---ETVEEM-IETMGQVEPDY-ICLTLSAS--MKSKDMIEIITNFKD-IHIDGIVFTKFD 388 (436)
T ss_pred CEEEEeCccccCcC-----H---HHHHHH-HHHHhhcCCCe-EEEEECCc--cChHHHHHHHHHhcC-CCCCEEEEEccc
Confidence 68999999976421 1 123322 22332 3453 44555554 234565778888876 345678999999
Q ss_pred CCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 230 IMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
-...+.....++... .+.+.|++.-.+=++|+.
T Consensus 389 ET~k~G~iLni~~~~--~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 389 ETASSGELLKIPAVS--SAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCCCccHHHHHHHHH--CcCEEEEeCCCCCCcchh
Confidence 998766555444332 334566666555555553
No 308
>PRK13768 GTPase; Provisional
Probab=97.66 E-value=0.0002 Score=74.65 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=41.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc--CCeEEEEEecCCCCcccHH-----HHHHHHHhCCCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ--ENCIILAVSPANSDLATSD-----ALQMAREADPTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~--~~~iIL~V~~a~~d~~~~~-----~l~l~~~~d~~~~rti~V 224 (728)
++.+|||||..+... ....... ..+++.. .+ ++++|+++.......+ .+.+..+. ..+.+.++|
T Consensus 98 ~~~~~d~~g~~~~~~------~~~~~~~-~~~~l~~~~~~-~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v 168 (253)
T PRK13768 98 DYVLVDTPGQMELFA------FRESGRK-LVERLSGSSKS-VVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPV 168 (253)
T ss_pred CEEEEeCCcHHHHHh------hhHHHHH-HHHHHHhcCCe-EEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 689999999764311 0111222 2233333 55 6666666644332222 11112222 247899999
Q ss_pred eccCCCCCCCc
Q 045702 225 ITKLDIMDRGT 235 (728)
Q Consensus 225 ltK~D~~~~~~ 235 (728)
+||+|+....+
T Consensus 169 ~nK~D~~~~~~ 179 (253)
T PRK13768 169 LNKADLLSEEE 179 (253)
T ss_pred EEhHhhcCchh
Confidence 99999987654
No 309
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00073 Score=76.78 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=84.1
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 41 SKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 41 ~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
..+.-|-++|+|.--+||+-||..|-|..+.--..|..|.. -|-++.....|+.
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqq--------------------------IgAt~fp~~ni~e 524 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQ--------------------------IGATYFPAENIRE 524 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeee--------------------------ccccccchHHHHH
Confidence 46788999999999999999999999876533323322221 1334444444443
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
.... +....+. .-.+|.+.+|||||.- .+.++-.+....+|.+||+| +-..
T Consensus 525 ~tk~----~~~~~K~-----------~~kvPg~lvIdtpghE-------------sFtnlRsrgsslC~~aIlvv-dImh 575 (1064)
T KOG1144|consen 525 KTKE----LKKDAKK-----------RLKVPGLLVIDTPGHE-------------SFTNLRSRGSSLCDLAILVV-DIMH 575 (1064)
T ss_pred HHHH----HHhhhhh-----------hcCCCeeEEecCCCch-------------hhhhhhhccccccceEEEEe-ehhc
Confidence 3221 1111000 1134678999999932 45566667778889555555 4445
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++..+. +.-+.-+.....+.|+.+||+|.+
T Consensus 576 Glepqt-iESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 576 GLEPQT-IESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred cCCcch-hHHHHHHHhcCCCeEEeehhhhhh
Confidence 666554 333444444568999999999997
No 310
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.62 E-value=0.0008 Score=62.47 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=49.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHH-HHhCC----CCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMA-READP----TGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~-~~~d~----~~~rti~Vlt 226 (728)
.|.|.||.|+...+ .++-+.|++-+|+.+|+..+++ ...-+...++ +++|. ...++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d--~eSf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMD--PESFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCC--HHHHHHHHHHHHHHhhccccccccEEEEec
Confidence 58999999987431 2567889999999999887764 3332223333 34443 4567888899
Q ss_pred cCCCCCCCcc
Q 045702 227 KLDIMDRGTN 236 (728)
Q Consensus 227 K~D~~~~~~~ 236 (728)
|+|+..+.+.
T Consensus 127 ~rdr~~p~~v 136 (198)
T KOG3883|consen 127 KRDRAEPREV 136 (198)
T ss_pred hhhcccchhc
Confidence 9999866543
No 311
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.61 E-value=0.00017 Score=75.47 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-..|++|..|+|||||||+|.+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCch
Confidence 36899999999999999999874
No 312
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0015 Score=73.76 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=51.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ....+.+..+ .... .. ..++|++++.. ..++..+++.+.. ....-+|+||+|..
T Consensus 430 DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa~-~~--a~lLVLpAtss--~~Dl~eii~~f~~-~~~~gvILTKlDEt 497 (559)
T PRK12727 430 KLVLIDTAGMGQRD-----RALAAQLNWL-RAAR-QV--TSLLVLPANAH--FSDLDEVVRRFAH-AKPQGVVLTKLDET 497 (559)
T ss_pred CEEEecCCCcchhh-----HHHHHHHHHH-HHhh-cC--CcEEEEECCCC--hhHHHHHHHHHHh-hCCeEEEEecCcCc
Confidence 68999999986321 1111122211 2222 22 23445555432 3444456666654 24677999999997
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
.......+++... .+.+-|++.-.+=.+|+
T Consensus 498 ~~lG~aLsv~~~~--~LPI~yvt~GQ~VPeDL 527 (559)
T PRK12727 498 GRFGSALSVVVDH--QMPITWVTDGQRVPDDL 527 (559)
T ss_pred cchhHHHHHHHHh--CCCEEEEeCCCCchhhh
Confidence 7655444444322 34456666555544554
No 313
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.58 E-value=0.00043 Score=70.41 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCC---CCC---CC-ccchhhhcc----CC-CCc
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPR---NPG---DD-GREWAEFRH----LP-GKR 111 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~---~~~---~~-~~~~~~~~~----~~-g~~ 111 (728)
..+-|+|||--||||+|++..|.+.-. .. . | .|-++.|.+.-. .+. -| ...|.+... -| |-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~-~---~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AK-K---T-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hc-c---C-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 355799999999999999999986321 10 0 0 144444432110 000 00 122333221 11 211
Q ss_pred c-------cChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCccc----CCCCCchhHHHHHHHH
Q 045702 112 F-------FDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKV----PVGDQPTDIEARIRKM 180 (728)
Q Consensus 112 ~-------~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~----~~~~~~~~~~~~~~~~ 180 (728)
. +.|+++...|++..+.. +..||||||-+.. ++| .| +
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~~----------------------~~~liDTPGQIE~FtWSAsG----sI------I 139 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEEF----------------------DYVLIDTPGQIEAFTWSASG----SI------I 139 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccc----------------------CEEEEcCCCceEEEEecCCc----cc------h
Confidence 1 34666666666654332 5799999997543 222 11 2
Q ss_pred HHHHhhcCCeEEEEEecCCCCccc----HHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 181 IMAYIRQENCIILAVSPANSDLAT----SDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 181 ~~~yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+..+...-.++|.+|++....... +..+--+.-+-....|+|+|+||+|+.+.+
T Consensus 140 te~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 140 TETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 223333334577777655332222 122223334445678999999999999865
No 314
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.58 E-value=0.00032 Score=67.24 Aligned_cols=26 Identities=46% Similarity=0.601 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+++++|.+++||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999997654
No 315
>PRK00098 GTPase RsgA; Reviewed
Probab=97.56 E-value=0.0003 Score=75.18 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
-.++++|.+|+|||||+|+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4699999999999999999998753
No 316
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.55 E-value=0.0002 Score=76.07 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999999864
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0006 Score=75.55 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=54.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.+|||+|..... ....+.+..+. . ...+. -+++|.+|+.. .++..+.++.+.. -.-.=+|+||.|-.
T Consensus 271 d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~-~~~LVl~at~~--~~~~~~~~~~f~~-~~~~~~I~TKlDEt 339 (420)
T PRK14721 271 HMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQV-KHLLLLNATSS--GDTLDEVISAYQG-HGIHGCIITKVDEA 339 (420)
T ss_pred CEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCc-eEEEEEcCCCC--HHHHHHHHHHhcC-CCCCEEEEEeeeCC
Confidence 68999999987431 11222222221 1 11233 34555566533 3444566666665 34567899999998
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
.......+++... .+.+.|++.-.+=++|+.
T Consensus 340 ~~~G~~l~~~~~~--~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 340 ASLGIALDAVIRR--KLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCccHHHHHHHHh--CCCEEEEECCCCchhhhh
Confidence 8766555444333 233556555444445543
No 318
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.54 E-value=0.00017 Score=75.55 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=63.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..-+.|.+||-+|+||||++|+|+....-|-.--.||--|.+-+.-- +...+ +-+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v------------------~d~Rf---d~l~--- 73 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEV------------------PDSRF---DLLC--- 73 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeec------------------CchHH---HHHH---
Confidence 35568999999999999999999988753333345776664432110 11111 0000
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCC---CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEE
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPN---VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAV 195 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~---~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V 195 (728)
++++|. ...|+++|..|+.+.++.++ -..+-..+.|+..|+|+=+|
T Consensus 74 ---------------------~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vDaifhVV 122 (391)
T KOG1491|consen 74 ---------------------PIYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVDAIFHVV 122 (391)
T ss_pred ---------------------HhcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhccceeEEE
Confidence 111111 12589999999998877664 34455677889999554444
No 319
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00058 Score=62.14 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=74.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+..-+++|+.++|||-||-.++...|+. .||-.+- .+|+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfma-------dcphtig------------vefg---------------------- 49 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-------DCPHTIG------------VEFG---------------------- 49 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhh-------cCCcccc------------eecc----------------------
Confidence 4567899999999999999999888742 3342220 1111
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-- 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-- 202 (728)
.-.|+++|.. ..|.+|||.| ++.++.++++|.+.+...+++..-.....
T Consensus 50 ---------------triievsgqk-iklqiwdtag-------------qerfravtrsyyrgaagalmvyditrrstyn 100 (215)
T KOG0097|consen 50 ---------------TRIIEVSGQK-IKLQIWDTAG-------------QERFRAVTRSYYRGAAGALMVYDITRRSTYN 100 (215)
T ss_pred ---------------eeEEEecCcE-EEEEEeeccc-------------HHHHHHHHHHHhccccceeEEEEehhhhhhh
Confidence 0122333322 2589999999 45889999999998875444443222111
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.-+.|+.-++.+..-..-++++-||.|+-+..
T Consensus 101 hlsswl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 101 HLSSWLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred hHHHHHhhhhccCCCceEEEEecchhhhhhcc
Confidence 12234444555554445567888999997644
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00074 Score=73.19 Aligned_cols=173 Identities=13% Similarity=0.149 Sum_probs=85.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCC---cccChHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGK---RFFDFTKVRQEI 122 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~---~~~d~~~i~~~i 122 (728)
.-|+++|.+|+||||++..|... +...+. + .. +...........+.|..+...-+- ...+..++.+.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~~g~----~-V~---lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al 277 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLKQNR----T-VG---FITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcCC----e-EE---EEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH
Confidence 35789999999999999999753 222210 1 11 111111100001223333222221 123445554444
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~ 200 (728)
...... ...++.||||||..... ...+.++ ..++. .++ .+++|.+++
T Consensus 278 ~~l~~~--------------------~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~-~~~LVLsag- 326 (407)
T PRK12726 278 QYMTYV--------------------NCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPD-LTCFTFSSG- 326 (407)
T ss_pred HHHHhc--------------------CCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCc-eEEEECCCc-
Confidence 322100 01268999999976321 1122222 22332 345 444555553
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChhh
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQED 262 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~ 262 (728)
...++...+++.+.. -...-+|+||.|-...+.....+.... .+.+-|++.-.+=++|
T Consensus 327 -~~~~d~~~i~~~f~~-l~i~glI~TKLDET~~~G~~Lsv~~~t--glPIsylt~GQ~VpdD 384 (407)
T PRK12726 327 -MKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLYTVMQET--NLPVLYMTDGQNITEN 384 (407)
T ss_pred -ccHHHHHHHHHhcCc-CCCCEEEEEcccCCCCccHHHHHHHHH--CCCEEEEecCCCCCcc
Confidence 334455666666664 345677899999987765544443222 2334555554433333
No 321
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.43 E-value=0.00088 Score=64.56 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999875
No 322
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.43 E-value=0.0006 Score=74.05 Aligned_cols=134 Identities=19% Similarity=0.322 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
.++.-|++|..---||+||+.+|+.+.---+..+-+ ....+|-+++.++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v------------------------------~ERvMDSnDlEkE- 51 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV------------------------------AERVMDSNDLEKE- 51 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccch------------------------------hhhhcCccchhhh-
Confidence 356679999999999999999999765211100000 1122333333321
Q ss_pred HHHhhhhcCCCCCcc--cceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVS--EKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s--~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
.+++ .+--.|.+.+ ..+.+|||||-.+-. + -+.+.++=.|.++|+|....
T Consensus 52 -----------RGITILaKnTav~~~~---~~INIvDTPGHADFG--G-----------EVERvl~MVDgvlLlVDA~E- 103 (603)
T COG1217 52 -----------RGITILAKNTAVNYNG---TRINIVDTPGHADFG--G-----------EVERVLSMVDGVLLLVDASE- 103 (603)
T ss_pred -----------cCcEEEeccceeecCC---eEEEEecCCCcCCcc--c-----------hhhhhhhhcceEEEEEEccc-
Confidence 1111 1111122222 258999999976432 1 12344555676666665543
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
+.-.|. ...+++.-..|.+-|+|+||+|..+...+
T Consensus 104 GpMPQT-rFVlkKAl~~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 104 GPMPQT-RFVLKKALALGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred CCCCch-hhhHHHHHHcCCCcEEEEeCCCCCCCCHH
Confidence 433344 55666666678999999999999876544
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.42 E-value=0.0009 Score=71.93 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=50.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHH---HHHHhh-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKM---IMAYIR-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~---~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
++.||||||..... ....+.++.+ +...+. .++ -+++|++|+.. ++++.-++.+...-..+-+|+||
T Consensus 198 D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~-~~~LVl~a~~g---~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 198 DVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPH-EVLLVLDATTG---QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred CEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCc-eEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEEC
Confidence 68999999986431 1111222222 222222 344 45666666543 33344556655444567899999
Q ss_pred CCCCCCCccHHHhHcCCCcccCCceeEe
Q 045702 228 LDIMDRGTNACNFLLGKVVPLRLGYVGV 255 (728)
Q Consensus 228 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v 255 (728)
.|....+.....++..- .+.+-|+++
T Consensus 269 lD~t~~~G~~l~~~~~~--~~Pi~~v~~ 294 (318)
T PRK10416 269 LDGTAKGGVVFAIADEL--GIPIKFIGV 294 (318)
T ss_pred CCCCCCccHHHHHHHHH--CCCEEEEeC
Confidence 99877665554444222 333445553
No 324
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0004 Score=66.93 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=48.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH-HHHHHh---CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL-QMAREA---DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l~~~~---d~~~~rti~VltK 227 (728)
.+++||.-|-. .++.+...|..+.+.+|++|++++.+ .-.++. ++.+.+ +..+.++++..||
T Consensus 62 ~f~vWDvGGq~-------------k~R~lW~~Y~~~t~~lIfVvDS~Dr~-Ri~eak~eL~~~l~~~~l~~~~llv~aNK 127 (181)
T KOG0070|consen 62 SFTVWDVGGQE-------------KLRPLWKHYFQNTQGLIFVVDSSDRE-RIEEAKEELHRMLAEPELRNAPLLVFANK 127 (181)
T ss_pred EEEEEecCCCc-------------ccccchhhhccCCcEEEEEEeCCcHH-HHHHHHHHHHHHHcCcccCCceEEEEech
Confidence 58999999843 56778999999999777777665432 222222 233333 3357899999999
Q ss_pred CCCCCCCc
Q 045702 228 LDIMDRGT 235 (728)
Q Consensus 228 ~D~~~~~~ 235 (728)
.|+...-+
T Consensus 128 qD~~~als 135 (181)
T KOG0070|consen 128 QDLPGALS 135 (181)
T ss_pred hhccccCC
Confidence 99976544
No 325
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.41 E-value=0.056 Score=60.12 Aligned_cols=30 Identities=53% Similarity=0.747 Sum_probs=27.0
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 41 SKISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 41 ~~~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..++.--|+|.|+||+|||||||.|.|-.|
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 456777899999999999999999999887
No 326
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00061 Score=74.36 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|+||||++..|.+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0011 Score=71.56 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=86.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
...++|-.+-||||||-|.|+=. |..-+.+..++-+.+.. ....|+-++.+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlf-------GgaIq~AG~Vk~rk~~~-----------------~a~SDWM~iEk----- 63 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLF-------GGAIQEAGTVKGRKSGK-----------------HAKSDWMEIEK----- 63 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHh-------cchhhhcceeeeccCCc-----------------ccccHHHHHHH-----
Confidence 35899999999999999999721 22222232222111111 01123333332
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
..|+|-..-.+...+.++ -+.|.||||--+- .+-+.+-+...|+. ++|++|..++..+
T Consensus 64 -------qRGISVtsSVMqF~Y~~~-~iNLLDTPGHeDF-------------SEDTYRtLtAvDsA-vMVIDaAKGiE~q 121 (528)
T COG4108 64 -------QRGISVTSSVMQFDYADC-LVNLLDTPGHEDF-------------SEDTYRTLTAVDSA-VMVIDAAKGIEPQ 121 (528)
T ss_pred -------hcCceEEeeEEEeccCCe-EEeccCCCCcccc-------------chhHHHHHHhhhee-eEEEecccCccHH
Confidence 245555555555555444 4899999995422 12234456677854 5556666788887
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
. ++|.+-+.-.+.|++-.+||+|......
T Consensus 122 T-~KLfeVcrlR~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 122 T-LKLFEVCRLRDIPIFTFINKLDREGRDP 150 (528)
T ss_pred H-HHHHHHHhhcCCceEEEeeccccccCCh
Confidence 7 8898888888999999999999976543
No 328
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0016 Score=71.69 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc--CCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ--ENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~--~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
++.||||||.... +.. .+.++ ..++.. ++.-+++|.+|+.. ..+..+.++.+... ..+=+|+||.|
T Consensus 256 DlVLIDTaGr~~~-------~~~-~l~el-~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlD 323 (388)
T PRK12723 256 DLVLVDTIGKSPK-------DFM-KLAEM-KELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLD 323 (388)
T ss_pred CEEEEcCCCCCcc-------CHH-HHHHH-HHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEecc
Confidence 6899999997632 111 12222 223332 23245666666654 33444566666542 35678999999
Q ss_pred CCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 230 IMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
-...+.....++... .+.+.|++.-.+=++|+.
T Consensus 324 et~~~G~~l~~~~~~--~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 324 ETTCVGNLISLIYEM--RKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred CCCcchHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 988776655554333 234566666555555553
No 329
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.36 E-value=0.00071 Score=69.18 Aligned_cols=75 Identities=16% Similarity=0.293 Sum_probs=40.9
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH-----HHHHHHHHhCCCCCceEEee
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS-----DALQMAREADPTGSRTIGVI 225 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~-----~~l~l~~~~d~~~~rti~Vl 225 (728)
..+.+||.||-...-. ......-....++..++|+++...+.++... +.+..+.++.| +.++.+.+
T Consensus 48 ~~l~iwD~pGq~~~~~--------~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfi 118 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFME--------NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFI 118 (232)
T ss_dssp CEEEEEEE-SSCSTTH--------TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEE
T ss_pred cEEEEEEcCCcccccc--------ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 3689999999753211 0111122334677785555554433443221 23445667777 68899999
Q ss_pred ccCCCCCCC
Q 045702 226 TKLDIMDRG 234 (728)
Q Consensus 226 tK~D~~~~~ 234 (728)
.|+|++..+
T Consensus 119 HK~D~l~~~ 127 (232)
T PF04670_consen 119 HKMDLLSED 127 (232)
T ss_dssp E-CCCS-HH
T ss_pred eecccCCHH
Confidence 999998644
No 330
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00077 Score=68.52 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=57.3
Q ss_pred CeEEEeCCCCccc-CCCCCchhHHHHHHHHHHHHhhcC---------------CeEEEEEecCCCCcccHHHHHHHHHhC
Q 045702 152 NMTLVDLPGITKV-PVGDQPTDIEARIRKMIMAYIRQE---------------NCIILAVSPANSDLATSDALQMAREAD 215 (728)
Q Consensus 152 ~LtlVDtPGi~~~-~~~~~~~~~~~~~~~~~~~yi~~~---------------~~iIL~V~~a~~d~~~~~~l~l~~~~d 215 (728)
.||+|||-|+.+- .+.+.-..+.+.+......|+++. ++.++++.|....+..-| +-.++++|
T Consensus 96 KLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslD-Lvtmk~Ld 174 (406)
T KOG3859|consen 96 KLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLD-LVTMKKLD 174 (406)
T ss_pred EEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHH-HHHHHHHh
Confidence 4899999999744 333333455566666666666543 445666777777777766 66678888
Q ss_pred CCCCceEEeeccCCCCCCCc
Q 045702 216 PTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 216 ~~~~rti~VltK~D~~~~~~ 235 (728)
. ...+|-||-|.|.+...+
T Consensus 175 s-kVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 175 S-KVNIIPVIAKADTISKEE 193 (406)
T ss_pred h-hhhhHHHHHHhhhhhHHH
Confidence 5 578999999999987654
No 331
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.34 E-value=0.0014 Score=68.66 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=55.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||-.... ...+. .+.++.. ..+++ .+++|.+|+. ..+++...++.+.. -...-+|+||.|-.
T Consensus 156 D~ViIDt~Gr~~~~----~~~l~-el~~~~~--~~~~~-~~~LVl~a~~--~~~d~~~~~~~f~~-~~~~~~I~TKlDet 224 (270)
T PRK06731 156 DYILIDTAGKNYRA----SETVE-EMIETMG--QVEPD-YICLTLSASM--KSKDMIEIITNFKD-IHIDGIVFTKFDET 224 (270)
T ss_pred CEEEEECCCCCcCC----HHHHH-HHHHHHh--hhCCC-eEEEEEcCcc--CHHHHHHHHHHhCC-CCCCEEEEEeecCC
Confidence 68999999976321 11121 2222221 22445 4555655542 23566778888876 45567899999999
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
........+.... .+.+-|++.-.+=++|+
T Consensus 225 ~~~G~~l~~~~~~--~~Pi~~it~Gq~vp~di 254 (270)
T PRK06731 225 ASSGELLKIPAVS--SAPIVLMTDGQDVKKNI 254 (270)
T ss_pred CCccHHHHHHHHH--CcCEEEEeCCCCCCcch
Confidence 8766554443322 23355655544444444
No 332
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.33 E-value=0.00089 Score=81.64 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=45.7
Q ss_pred CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 150 VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 150 ~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.++||||||.. .+..+...+...+|. +++|++++.++..+. ...++.+...+.++|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aDi-vlLVVDa~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLADL-AVLVVDINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCCE-EEEEEECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 3569999999932 234455566778884 445556665555544 4444444445789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 975
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.002 Score=72.13 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=53.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... . .....+..++.. ...+. -+++|++++. ...+..++++.+...+ ..-+|+||+|-.
T Consensus 301 DlVlIDt~G~~~~d----~-~~~~~L~~ll~~-~~~~~-~~~LVl~a~~--~~~~l~~~~~~f~~~~-~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRD----K-RLIEELKALIEF-SGEPI-DVYLVLSATT--KYEDLKDIYKHFSRLP-LDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCC----H-HHHHHHHHHHhc-cCCCC-eEEEEEECCC--CHHHHHHHHHHhCCCC-CCEEEEeccccc
Confidence 78999999986321 1 111233333331 11333 3445555543 3344456667776544 346889999997
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
.......+++.... +.+.|++.-.+=..|+
T Consensus 371 ~~~G~i~~~~~~~~--lPv~yit~Gq~VpdDl 400 (424)
T PRK05703 371 SSLGSILSLLIESG--LPISYLTNGQRVPDDI 400 (424)
T ss_pred ccccHHHHHHHHHC--CCEEEEeCCCCChhhh
Confidence 76555445444332 3355665544434444
No 334
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00027 Score=65.74 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=54.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC--cccHHHHHHHHHhC-CCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD--LATSDALQMAREAD-PTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d--~~~~~~l~l~~~~d-~~~~rti~VltK~ 228 (728)
+|.||||.| ++.++.++..|.+.+=..+|++.-.+.. +...+|+.-++... -...-++++-||+
T Consensus 68 hLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~ 134 (219)
T KOG0081|consen 68 HLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKA 134 (219)
T ss_pred EEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCcc
Confidence 589999999 4688999999999988777777433211 11112222222111 2345688999999
Q ss_pred CCCCCCccHHHhHcCCCcccCCceeEeec
Q 045702 229 DIMDRGTNACNFLLGKVVPLRLGYVGVVN 257 (728)
Q Consensus 229 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 257 (728)
|+.+......+.........+++||-.+.
T Consensus 135 DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 135 DLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred chhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99875543222222222334566665443
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=97.29 E-value=0.00084 Score=72.45 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=48.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ..+-..++.+.+ .-.++ .+++|.++..+ +++...++.+...-.-.-+|+||+|..
T Consensus 224 DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd-~~iLVl~a~~g---~d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 224 DVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPD-LVIFVGDALAG---NDAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCc-eEEEeeccccc---hhHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 68999999987431 222223333322 22566 44456666442 466777777765445688999999998
Q ss_pred CCCccHHHhH
Q 045702 232 DRGTNACNFL 241 (728)
Q Consensus 232 ~~~~~~~~~l 241 (728)
..+..+..+.
T Consensus 293 ~~~G~~ls~~ 302 (336)
T PRK14974 293 AKGGAALSIA 302 (336)
T ss_pred CCccHHHHHH
Confidence 8776554443
No 336
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.29 E-value=0.0015 Score=62.20 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
No 337
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00065 Score=75.21 Aligned_cols=134 Identities=15% Similarity=0.221 Sum_probs=79.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+.-+.||..---|||||...|+...- |+-+. ...+.+.|--++.++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg--------~i~~~-----------------------~~q~q~LDkl~vERE--- 105 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTG--------TIDNN-----------------------IGQEQVLDKLQVERE--- 105 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhC--------CCCCC-----------------------Cchhhhhhhhhhhhh---
Confidence 45689999999999999999985421 11000 011122222222221
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
.+-.+...+-++....-...-|.||||||-.+-. .-+.+-+.-++.+||+| +|+++...
T Consensus 106 -------RGITIkaQtasify~~~~~ylLNLIDTPGHvDFs-------------~EVsRslaac~G~lLvV-DA~qGvqA 164 (650)
T KOG0462|consen 106 -------RGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS-------------GEVSRSLAACDGALLVV-DASQGVQA 164 (650)
T ss_pred -------cCcEEEeeeeEEEEEcCCceEEEeecCCCccccc-------------ceehehhhhcCceEEEE-EcCcCchH
Confidence 1223344444555554223358999999976331 12344566778555555 67778877
Q ss_pred HHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 205 SDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 205 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
|....+...+. .+..+|.|+||+|+....
T Consensus 165 QT~anf~lAfe-~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 165 QTVANFYLAFE-AGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred HHHHHHHHHHH-cCCeEEEeeeccCCCCCC
Confidence 77555554444 478999999999997644
No 338
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0011 Score=73.97 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=46.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... .+.-+.+..+ .. +..++ .+++|+++... +++...++.+...-..+-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l-~~-~~~pd-evlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEI-KE-AVKPD-EVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHH-HH-Hhccc-ceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 68999999976331 1111222222 11 33456 34455556543 566778888765444567899999998
Q ss_pred CCCccHHHh
Q 045702 232 DRGTNACNF 240 (728)
Q Consensus 232 ~~~~~~~~~ 240 (728)
..+..+..+
T Consensus 246 a~~G~~ls~ 254 (437)
T PRK00771 246 AKGGGALSA 254 (437)
T ss_pred CcccHHHHH
Confidence 776655433
No 339
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.22 E-value=0.0013 Score=61.26 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc--HHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT--SDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
+|.||||.|- +.+..+---|.+.++..+|+..-...|--. ..|..-++.......-.++|-||+|
T Consensus 63 ~L~IWDTAGQ-------------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiD 129 (218)
T KOG0088|consen 63 DLHIWDTAGQ-------------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKID 129 (218)
T ss_pred eeeeeeccch-------------HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCccc
Confidence 7999999993 344555556899999888887433222100 0122223333444567889999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+-..
T Consensus 130 LEee 133 (218)
T KOG0088|consen 130 LEEE 133 (218)
T ss_pred HHHh
Confidence 9643
No 340
>PTZ00099 rab6; Provisional
Probab=97.21 E-value=0.00083 Score=65.99 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=44.3
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH-HHHHHHHHhCCCCCceEEeeccC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS-DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l~l~~~~d~~~~rti~VltK~ 228 (728)
..+.||||||.. ....+...|++.++++||++...+.. +... .++..+........++|+|.||+
T Consensus 29 v~l~iwDt~G~e-------------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQE-------------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChH-------------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 368999999954 44567788999999666666543321 2111 22333333333357889999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 96 DL~~ 99 (176)
T PTZ00099 96 DLGD 99 (176)
T ss_pred cccc
Confidence 9964
No 341
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0034 Score=68.34 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCC-ceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGS-RTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~-rti~VltK~D~ 230 (728)
.++|||.||.- +.+..|+.. +.-.|+. ++|++++.++..+. .+.+.-+|-.|. +.|+|+||+|+
T Consensus 51 ~~~fIDvpgh~------------~~i~~miag-~~~~d~a-lLvV~~deGl~~qt-gEhL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHP------------DFISNLLAG-LGGIDYA-LLVVAADEGLMAQT-GEHLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcH------------HHHHHHHhh-hcCCceE-EEEEeCccCcchhh-HHHHHHHHhcCCCceEEEEecccc
Confidence 58999999965 355555543 3344544 45556666666555 444445555454 45999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
.+..
T Consensus 116 ~d~~ 119 (447)
T COG3276 116 VDEA 119 (447)
T ss_pred ccHH
Confidence 8754
No 342
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.20 E-value=0.00085 Score=69.16 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=22.0
Q ss_pred EECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCC
Q 045702 50 VVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRP 91 (728)
Q Consensus 50 VvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~ 91 (728)
|+|+.||||||+..++... ++.. -|.+..+.|-+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~----~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESN----GRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-----S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhc----cCCceEEEcchHh
Confidence 7999999999999999853 2221 2556666665443
No 343
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0024 Score=65.66 Aligned_cols=130 Identities=19% Similarity=0.347 Sum_probs=84.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAET 126 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 126 (728)
.|..||...-||+||--||++.= .-.+ +....+|+++.+.-++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~l-a~~~----------------------------------~~~~~~y~~id~aPeE-- 56 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVL-AKKG----------------------------------GAEAKAYDQIDNAPEE-- 56 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHH-Hhhc----------------------------------cccccchhhhccCchH--
Confidence 58999999999999999998641 1100 1122334444322111
Q ss_pred hhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-ccH
Q 045702 127 NKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-ATS 205 (728)
Q Consensus 127 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~~ 205 (728)
...++.-++-.+++...+. +...||.||-. +.+++|+....+- |..||+|..+...+ .+.
T Consensus 57 -----k~rGITIntahveyet~~r-hyahVDcPGHa------------DYvKNMItgAaqm-DgAILVVsA~dGpmPqTr 117 (394)
T COG0050 57 -----KARGITINTAHVEYETANR-HYAHVDCPGHA------------DYVKNMITGAAQM-DGAILVVAATDGPMPQTR 117 (394)
T ss_pred -----hhcCceeccceeEEecCCc-eEEeccCCChH------------HHHHHHhhhHHhc-CccEEEEEcCCCCCCcch
Confidence 1245666666677766554 68999999955 4778888877654 44788887665444 333
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+=.-+++++. -..++.++||+|+++..
T Consensus 118 EHiLlarqvG--vp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 118 EHILLARQVG--VPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhhhhhcC--CcEEEEEEecccccCcH
Confidence 4345677775 24788999999999843
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0044 Score=68.28 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=54.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc-CCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ-ENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~-~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
++.||||||...... ..-+.+.++.. .... ...-+++|.+|+.+ ..+....++.+.. -...-+|+||.|-
T Consensus 301 D~VLIDTaGr~~rd~-----~~l~eL~~~~~-~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~-~~~~glIlTKLDE 371 (432)
T PRK12724 301 ELILIDTAGYSHRNL-----EQLERMQSFYS-CFGEKDSVENLLVLSSTSS--YHHTLTVLKAYES-LNYRRILLTKLDE 371 (432)
T ss_pred CEEEEeCCCCCccCH-----HHHHHHHHHHH-hhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcC-CCCCEEEEEcccC
Confidence 689999999863211 11112222221 1211 12234555566543 3344566666644 3457789999999
Q ss_pred CCCCccHHHhHcCCCcccCCceeEeecCChhhh
Q 045702 231 MDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDI 263 (728)
Q Consensus 231 ~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~ 263 (728)
...+.....++... .+.+-|++.-.+=+.|+
T Consensus 372 t~~~G~il~i~~~~--~lPI~ylt~GQ~VPeDi 402 (432)
T PRK12724 372 ADFLGSFLELADTY--SKSFTYLSVGQEVPFDI 402 (432)
T ss_pred CCCccHHHHHHHHH--CCCEEEEecCCCCCCCH
Confidence 88766555444322 23455666655555554
No 345
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.00025 Score=70.88 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=45.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... .+....++++. ..+ .++ -+++|.+++... .+ +..+..+......+=+|+||.|-.
T Consensus 85 D~vlIDT~Gr~~~d-----~~~~~el~~~~-~~~-~~~-~~~LVlsa~~~~--~~-~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 85 DLVLIDTAGRSPRD-----EELLEELKKLL-EAL-NPD-EVHLVLSATMGQ--ED-LEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp SEEEEEE-SSSSTH-----HHHHHHHHHHH-HHH-SSS-EEEEEEEGGGGG--HH-HHHHHHHHHHSSTCEEEEESTTSS
T ss_pred CEEEEecCCcchhh-----HHHHHHHHHHh-hhc-CCc-cceEEEecccCh--HH-HHHHHHHhhcccCceEEEEeecCC
Confidence 68999999976321 11122233222 222 344 455555655432 22 323332222223456779999998
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecC
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
........++... .+++.|++.-.+
T Consensus 154 ~~~G~~l~~~~~~--~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 154 ARLGALLSLAYES--GLPISYITTGQR 178 (196)
T ss_dssp STTHHHHHHHHHH--TSEEEEEESSSS
T ss_pred CCcccceeHHHHh--CCCeEEEECCCC
Confidence 7765544443332 233445544333
No 346
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00055 Score=72.11 Aligned_cols=144 Identities=24% Similarity=0.347 Sum_probs=79.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCc----ccccceEEEeeeCCCCCCCCccchhhhccCCC-CcccChHHH--H
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDI----CTRRPLALMLVNRPRNPGDDGREWAEFRHLPG-KRFFDFTKV--R 119 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~----~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g-~~~~d~~~i--~ 119 (728)
+++|+|.--+|||||+--|+.-. |-.|.|- .=|.|-+++-.+++... .+.+..+. ....++.+- .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis-------~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSIS-------NEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccc-------hhcccccccccccchhhcccH
Confidence 69999999999999999888655 4544442 23666666544443221 01111111 112233322 1
Q ss_pred HHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC
Q 045702 120 QEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN 199 (728)
Q Consensus 120 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~ 199 (728)
++|.+...+ -+||+|+.|-.+--. . .+ .-...| .+++..|+| +|+
T Consensus 241 EEi~e~SSK-----------------------lvTfiDLAGh~kY~~----T----Ti-~gLtgY--~Ph~A~LvV-sA~ 285 (591)
T KOG1143|consen 241 EEIVEKSSK-----------------------LVTFIDLAGHAKYQK----T----TI-HGLTGY--TPHFACLVV-SAD 285 (591)
T ss_pred HHHHhhhcc-----------------------eEEEeecccchhhhe----e----ee-eecccC--CCceEEEEE-EcC
Confidence 222221111 269999999653210 0 00 111233 345455544 444
Q ss_pred CC--cccHHHHHHHHHhCCCCCceEEeeccCCCCCCCcc
Q 045702 200 SD--LATSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 200 ~d--~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
.+ +++.+-+.++..++ .|.++++||+|+.++...
T Consensus 286 ~Gi~~tTrEHLgl~~AL~---iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 286 RGITWTTREHLGLIAALN---IPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred CCCccccHHHHHHHHHhC---CCeEEEEEeeccccchhH
Confidence 43 45666677777776 799999999999987543
No 347
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.14 E-value=0.00017 Score=71.10 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=67.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAET 126 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 126 (728)
.+||||+-.+||++||-..+-..| |. ...||++ +.|..
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~f-p~-----~yvPTVF-------------dnys~----------------------- 43 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNAF-PE-----EYVPTVF-------------DNYSA----------------------- 43 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCcC-cc-----cccCeEE-------------ccceE-----------------------
Confidence 589999999999999998886654 54 3455554 12221
Q ss_pred hhhcCCCCCcccceEEEEEe-cCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC-CCcc-
Q 045702 127 NKEAGSNRGVSEKQIGLKIS-SPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN-SDLA- 203 (728)
Q Consensus 127 ~~~~g~~~~~s~~~i~l~i~-~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~-~d~~- 203 (728)
.+.+. +. ...|.||||.|-.+- +.++.+ + ....|.++++..-.+ ..+.
T Consensus 44 ---------------~v~V~dg~-~v~L~LwDTAGqedY----------DrlRpl--s-Y~~tdvfl~cfsv~~p~S~~n 94 (198)
T KOG0393|consen 44 ---------------NVTVDDGK-PVELGLWDTAGQEDY----------DRLRPL--S-YPQTDVFLLCFSVVSPESFEN 94 (198)
T ss_pred ---------------EEEecCCC-EEEEeeeecCCCccc----------cccccc--C-CCCCCEEEEEEEcCChhhHHH
Confidence 12221 11 125899999994421 234433 3 456675655543222 1111
Q ss_pred -cHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 204 -TSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 204 -~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
...|+--++.+.| +.|+|+|.||.|+.+
T Consensus 95 v~~kW~pEi~~~cp-~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 95 VKSKWIPEIKHHCP-NVPIILVGTKADLRD 123 (198)
T ss_pred HHhhhhHHHHhhCC-CCCEEEEeehHHhhh
Confidence 1223333444454 699999999999984
No 348
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.08 E-value=0.00034 Score=76.96 Aligned_cols=26 Identities=46% Similarity=0.616 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.-.|.+||-+|+||||+||+|+|.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 45799999999999999999999985
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.0096 Score=62.66 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHH---HHHhh-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMI---MAYIR-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~---~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
++.||||||..... ......+.++. ...+. .++ -+++|++++. .++++..+..+...-...-+|+||
T Consensus 156 D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~-~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlTK 226 (272)
T TIGR00064 156 DVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPD-EVLLVLDATT---GQNALEQAKVFNEAVGLTGIILTK 226 (272)
T ss_pred CEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCc-eEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEEc
Confidence 68999999976421 11112222221 11112 255 4455666643 233355555554333467899999
Q ss_pred CCCCCCCccHHHhH
Q 045702 228 LDIMDRGTNACNFL 241 (728)
Q Consensus 228 ~D~~~~~~~~~~~l 241 (728)
+|....+.....+.
T Consensus 227 lDe~~~~G~~l~~~ 240 (272)
T TIGR00064 227 LDGTAKGGIILSIA 240 (272)
T ss_pred cCCCCCccHHHHHH
Confidence 99988766554433
No 350
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0025 Score=71.76 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=77.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-....++++|.-.+|||+|+..|++... |.... +++..++-+.. . +.+..
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~------------------l---~~E~e--- 175 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDT------------------L---FYEQE--- 175 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceecc-ccccc-----ccccccccccc------------------c---hhhHh---
Confidence 3445689999999999999999998874 54321 11111111100 0 00000
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCc--CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVL--NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~--~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
.+-.+-..+..+-+...... -++++||||-..- ..++ ...++.+|.++|+|..+.
T Consensus 176 ---------Rg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF------------~DE~-ta~l~~sDgvVlvvDv~E- 232 (971)
T KOG0468|consen 176 ---------RGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF------------SDET-TASLRLSDGVVLVVDVAE- 232 (971)
T ss_pred ---------cCceEeecceEEEEecCcCceeeeeeecCCCcccc------------hHHH-HHHhhhcceEEEEEEccc-
Confidence 11122223334433332222 4799999997632 2222 234677886666665553
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
+..-.. .++++..-....++.+|+||+|++
T Consensus 233 GVmlnt-Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 233 GVMLNT-ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CceeeH-HHHHHHHHhccCcEEEEEehhHHH
Confidence 333222 467777777789999999999986
No 351
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.014 Score=65.93 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=54.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.+|||+|..... ..+.+.. .++.... .+.- .++|.+++... .+..+.++.+... ..+-+|+||+|-.
T Consensus 336 d~VLIDTaGr~~~d-----~~~~e~~-~~l~~~~-~p~e-~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRD-----RMVSEQI-AMLHGAG-APVK-RLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhh-----HHHHHHH-HHHhccC-CCCe-eEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCc
Confidence 57999999976321 0111111 1111111 1232 45555665432 3445566777654 4567889999998
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
........++... .+.+-|++.-.+=.+|+.
T Consensus 405 ~~~G~~l~i~~~~--~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 405 ASLGGALDVVIRY--KLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred ccchHHHHHHHHH--CCCeEEEecCCCChhhhc
Confidence 7766555444333 344567766665555553
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0031 Score=69.66 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=35.8
Q ss_pred hcCCeEEEEEecCCCCcccHHHHHHHHHhCCCC-CceEEeeccCCCCCCCc
Q 045702 186 RQENCIILAVSPANSDLATSDALQMAREADPTG-SRTIGVITKLDIMDRGT 235 (728)
Q Consensus 186 ~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~~ 235 (728)
+-+| ++|+.++++-++.... +.++.-+.+.| .|++||+|..|+.....
T Consensus 132 KIaD-LVlLlIdgnfGfEMET-mEFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 132 KIAD-LVLLLIDGNFGFEMET-MEFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred Hhhh-eeEEEeccccCceehH-HHHHHHHhhcCCCceEEEEeecccccChH
Confidence 3456 7888888888887665 66666666555 57899999999997654
No 353
>PRK10867 signal recognition particle protein; Provisional
Probab=96.97 E-value=0.0048 Score=68.89 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ...-..+..+ ...+ .++.+ ++|+++.. .+++...++.+...-.-+-+|+||+|-.
T Consensus 185 DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~ev-llVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 185 DVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEI-LLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeE-EEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 68999999976321 1222222222 2233 45545 55555543 4677788888775445678899999977
Q ss_pred CCCccHHH
Q 045702 232 DRGTNACN 239 (728)
Q Consensus 232 ~~~~~~~~ 239 (728)
..+..+..
T Consensus 254 ~rgG~als 261 (433)
T PRK10867 254 ARGGAALS 261 (433)
T ss_pred ccccHHHH
Confidence 66554443
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.90 E-value=0.01 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
-+.|.|-|.+++|||||+++|..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHH
Confidence 46899999999999999999974
No 355
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.90 E-value=0.00074 Score=68.10 Aligned_cols=39 Identities=31% Similarity=0.317 Sum_probs=28.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCC---cccccceEE
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCD---ICTRRPLAL 85 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~---~~Tr~p~~i 85 (728)
-++-+||-+|+||||++.-|+|.. -|+.++ .-|++|.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~ 101 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVI 101 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceE
Confidence 367889999999999999999975 455444 234555444
No 356
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.85 E-value=0.0042 Score=57.05 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=47.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc---cHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA---TSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~---~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
+|+++|.-|-. .++-....|..+.|.+|+++.++..... +++..+++.+..-...++++-.||-
T Consensus 63 ~LnvwDiGGqr-------------~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQ 129 (185)
T KOG0074|consen 63 HLNVWDIGGQR-------------GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQ 129 (185)
T ss_pred EEEEEecCCcc-------------ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhh
Confidence 68999998843 5667889999999977777765432222 1222234444444567888889999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|++...
T Consensus 130 dlltaa 135 (185)
T KOG0074|consen 130 DLLTAA 135 (185)
T ss_pred HHHhhc
Confidence 998654
No 357
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.00081 Score=75.13 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=64.3
Q ss_pred CCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--------ccH
Q 045702 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--------ATS 205 (728)
Q Consensus 134 ~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--------~~~ 205 (728)
.||+-++-...+. +.-..+||+|.||.- .++.+|+.. +..+|..||||+.....+ .+.
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhk------------dFi~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHK------------DFIPNMISG-ASQADVAVLVVDASTGEFESGFDPGGQTR 304 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCcc------------ccchhhhcc-ccccceEEEEEECCcchhhhccCCCCchH
Confidence 3555444444444 445579999999943 244455544 345666777776443222 233
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCc----------ccCCceeEeecCChhh
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVV----------PLRLGYVGVVNRSQED 262 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~----------~l~~g~~~v~~rs~~~ 262 (728)
+-..+++.+. -...|+++||+|+++=..+..+.+.++.- .-.+.|++++.-+.+.
T Consensus 305 Eha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 305 EHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGEN 369 (603)
T ss_pred HHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCc
Confidence 3345556555 46789999999999755443333333321 1235666666655443
No 358
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.79 E-value=0.0065 Score=59.23 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=40.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.|+||||..... .+.-..+..+ ... ..++.++| |+++.. ..++.+.+..+.....-.-+|+||+|..
T Consensus 84 d~viiDt~g~~~~~-----~~~l~~l~~l-~~~-~~~~~~~l-Vv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~~ 152 (173)
T cd03115 84 DVVIVDTAGRLQID-----ENLMEELKKI-KRV-VKPDEVLL-VVDAMT---GQDAVNQAKAFNEALGITGVILTKLDGD 152 (173)
T ss_pred CEEEEECcccchhh-----HHHHHHHHHH-Hhh-cCCCeEEE-EEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcCC
Confidence 58999999976321 1111222222 111 23664555 444542 2334555555533223577899999998
Q ss_pred CCCccHH
Q 045702 232 DRGTNAC 238 (728)
Q Consensus 232 ~~~~~~~ 238 (728)
.......
T Consensus 153 ~~~g~~~ 159 (173)
T cd03115 153 ARGGAAL 159 (173)
T ss_pred CCcchhh
Confidence 7765543
No 359
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.76 E-value=0.42 Score=57.37 Aligned_cols=24 Identities=50% Similarity=0.617 Sum_probs=21.1
Q ss_pred ECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 51 VGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 51 vG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
+|.||+|||||||.|.|-.| ++.+
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m~ 24 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVMD 24 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cccc
Confidence 59999999999999999997 6644
No 360
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.00056 Score=72.75 Aligned_cols=133 Identities=18% Similarity=0.292 Sum_probs=85.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+..|.|+..-.+||+|.-+.|+-.. ..|+....+ .+|.+.+||-.+.++
T Consensus 37 irnigiiahidagktttterily~a-------g~~~s~g~v---------------------ddgdtvtdfla~ere--- 85 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLA-------GAIHSAGDV---------------------DDGDTVTDFLAIERE--- 85 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHh-------hhhhccccc---------------------CCCchHHHHHHHHHh---
Confidence 3458888999999999999998322 111111110 135666777665542
Q ss_pred HhhhhcCCCCCcc--cceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 125 ETNKEAGSNRGVS--EKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 125 ~~~~~~g~~~~~s--~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.++. ...+.+.+.|. .+.+|||||-.+-.. + +.+.++--| -+++|.+++.+.
T Consensus 86 ---------rgitiqsaav~fdwkg~---rinlidtpghvdf~l-----e--------verclrvld-gavav~dasagv 139 (753)
T KOG0464|consen 86 ---------RGITIQSAAVNFDWKGH---RINLIDTPGHVDFRL-----E--------VERCLRVLD-GAVAVFDASAGV 139 (753)
T ss_pred ---------cCceeeeeeeecccccc---eEeeecCCCcceEEE-----E--------HHHHHHHhc-CeEEEEeccCCc
Confidence 2332 23333444432 579999999763311 1 223344445 456777788787
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
..+. +..+|+.+....|.++.+||+|.....-
T Consensus 140 e~qt-ltvwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 140 EAQT-LTVWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred ccce-eeeehhccccCCchhhhhhhhhhhhhhh
Confidence 7776 8899999999999999999999986543
No 361
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.74 E-value=0.0013 Score=70.38 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
-++.|||-+|+|||||||+|......++|+
T Consensus 253 IrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 253 IRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred eEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 379999999999999999999888766655
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.73 E-value=0.086 Score=55.08 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g 67 (728)
+-+.|.+-|.+++|||||+++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 456899999999999999999963
No 363
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.011 Score=62.17 Aligned_cols=67 Identities=24% Similarity=0.330 Sum_probs=46.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCe--EEEEEecCCCCcccHHHHHHH--HHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENC--IILAVSPANSDLATSDALQMA--READPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--iIL~V~~a~~d~~~~~~l~l~--~~~d~~~~rti~VltK 227 (728)
+++|||-||-. .+++..|..+.. +.++|+++..+..++.+..++ ..+ ..+.++|+||
T Consensus 71 q~tlvDCPGHa----------------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c~klvvvink 131 (522)
T KOG0461|consen 71 QFTLVDCPGHA----------------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---CKKLVVVINK 131 (522)
T ss_pred eeEEEeCCCcH----------------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---ccceEEEEec
Confidence 67999999954 344444555542 456677787788777765443 333 4678999999
Q ss_pred CCCCCCCccH
Q 045702 228 LDIMDRGTNA 237 (728)
Q Consensus 228 ~D~~~~~~~~ 237 (728)
+|....+..+
T Consensus 132 id~lpE~qr~ 141 (522)
T KOG0461|consen 132 IDVLPENQRA 141 (522)
T ss_pred cccccchhhh
Confidence 9999886654
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.61 E-value=0.011 Score=64.38 Aligned_cols=175 Identities=18% Similarity=0.187 Sum_probs=97.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCC---CccchhhhccCCCCcccChHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGD---DGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~---~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
--|++||+.|+||||-|=-|..+-++ .. .--++.+. .+...... .-..|+..+..|=....+..++..++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~-~~--~~~kVaiI----TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVM-LK--KKKKVAII----TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh-hc--cCcceEEE----EeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 35899999999999999888755320 00 00111111 11100000 00345566666655566777777666
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcC-CeEEEEEecCCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQE-NCIILAVSPANSD 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~-~~iIL~V~~a~~d 201 (728)
..-... ++.||||-|-.... ....+-...|+... +.-+++|.+|+..
T Consensus 277 ~~l~~~-----------------------d~ILVDTaGrs~~D---------~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 277 EALRDC-----------------------DVILVDTAGRSQYD---------KEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred HHhhcC-----------------------CEEEEeCCCCCccC---------HHHHHHHHHHHhccccceEEEEEecCcc
Confidence 543321 68999999976431 12223345566655 3446667777543
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
..|.......+..-+.. -+++||.|-...-.+...++... .+.+.|+..-.+=+.|+.
T Consensus 325 --~~dlkei~~~f~~~~i~-~~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 325 --YEDLKEIIKQFSLFPID-GLIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred --hHHHHHHHHHhccCCcc-eeEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCCCCchhh
Confidence 44555677777764433 46799999876533333333322 244566666556666654
No 365
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0045 Score=59.01 Aligned_cols=71 Identities=14% Similarity=0.288 Sum_probs=49.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-c--ccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-L--ATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~--~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.|.+||+-| ++..+++...|...+|+||.++++++.+ + ..+.-..+...=.-.|.|.+..+||-
T Consensus 70 ~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 70 PLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred eeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 589999998 3467899999999999777777665522 1 11121233333334689999999999
Q ss_pred CCCCCCc
Q 045702 229 DIMDRGT 235 (728)
Q Consensus 229 D~~~~~~ 235 (728)
|+-+.-+
T Consensus 137 d~q~~~~ 143 (197)
T KOG0076|consen 137 DLQNAME 143 (197)
T ss_pred hhhhhhh
Confidence 9976543
No 366
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.53 E-value=0.0057 Score=63.81 Aligned_cols=26 Identities=42% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.-+.+.|||-+|+||||||||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 45789999999999999999997544
No 367
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.028 Score=59.17 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=23.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-+.-.|.|+|.||+|||+|++.|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 456679999999999999999999864
No 368
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0044 Score=71.16 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
...-|++|..---||+||..+|+...- -+..|.+..+++-..... +.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld~red------eq---------------------- 54 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLDTRED------EQ---------------------- 54 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeeccccch------hh----------------------
Confidence 355699999999999999999985431 245666666654433221 10
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
+.-++-...++|. +.++ .-+.|||+||-.+- ...+.+...-+| .-|+.+++..++.
T Consensus 55 --~rgitmkss~is~------~~~~--~~~nlidspghvdf-------------~sevssas~l~d-~alvlvdvvegv~ 110 (887)
T KOG0467|consen 55 --TRGITMKSSAISL------LHKD--YLINLIDSPGHVDF-------------SSEVSSASRLSD-GALVLVDVVEGVC 110 (887)
T ss_pred --hhceeeecccccc------ccCc--eEEEEecCCCccch-------------hhhhhhhhhhcC-CcEEEEeeccccc
Confidence 0011112233331 1111 13789999997633 233444555667 4556666777777
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+. ..++|++=-.+.+.|+|+||+|..
T Consensus 111 ~qt-~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 111 SQT-YAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred hhH-HHHHHHHHHccCceEEEEehhhhH
Confidence 766 778887766789999999999953
No 369
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.48 E-value=0.012 Score=65.67 Aligned_cols=91 Identities=23% Similarity=0.248 Sum_probs=51.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ...-..+..+. . .-.++.++ +|+++. ..+++...++.+...-.-+-+|+||+|..
T Consensus 184 DvVIIDTaGr~~~d-----~~l~~eL~~i~-~-~~~p~e~l-LVvda~---tgq~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQID-----EELMEELAAIK-E-ILNPDEIL-LVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCccccC-----HHHHHHHHHHH-H-hhCCceEE-EEEecc---chHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 68999999975321 12222222222 2 23456454 444554 34677888888765445677889999976
Q ss_pred CCCccHHHhHcCCCcccCCceeEe
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGV 255 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v 255 (728)
..+..+..+..... +.+-|+++
T Consensus 253 ~~~G~~lsi~~~~~--~PI~fi~~ 274 (428)
T TIGR00959 253 ARGGAALSVRSVTG--KPIKFIGV 274 (428)
T ss_pred ccccHHHHHHHHHC--cCEEEEeC
Confidence 65554443333222 23445554
No 370
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.47 E-value=0.089 Score=66.53 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.1
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCccc
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRG 74 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~ 74 (728)
-..+|=.+|||+++|||||+|+.- |..| |-.
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 568999999999999999999997 8875 654
No 371
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.055 Score=49.87 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=47.9
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC---CCCceEEeeccCC
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADP---TGSRTIGVITKLD 229 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~---~~~rti~VltK~D 229 (728)
+.++|+-|- +.++.+.+.|.....++|+++.+|..|--...-.++-+-+.. .....++..||-|
T Consensus 63 fNvwdvGGq-------------d~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQD 129 (180)
T KOG0071|consen 63 FNVWDVGGQ-------------DKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQD 129 (180)
T ss_pred EeeeeccCc-------------hhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcc
Confidence 689999883 378899999999999999999888654211111223333322 2456778889999
Q ss_pred CCCCCc
Q 045702 230 IMDRGT 235 (728)
Q Consensus 230 ~~~~~~ 235 (728)
+.+.-.
T Consensus 130 lp~A~~ 135 (180)
T KOG0071|consen 130 LPDAMK 135 (180)
T ss_pred cccccC
Confidence 986543
No 372
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.018 Score=54.62 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=47.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHH----HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ----MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~----l~~~~d~~~~rti~VltK 227 (728)
..|-+|+-|-. +.+...+.|+...++|+..|+.+...-- +++.. ++....-...|.++..||
T Consensus 65 ~ftt~DLGGH~-------------qArr~wkdyf~~v~~iv~lvda~d~er~-~es~~eld~ll~~e~la~vp~lilgnK 130 (193)
T KOG0077|consen 65 TFTTFDLGGHL-------------QARRVWKDYFPQVDAIVYLVDAYDQERF-AESKKELDALLSDESLATVPFLILGNK 130 (193)
T ss_pred eEEEEccccHH-------------HHHHHHHHHHhhhceeEeeeehhhHHHh-HHHHHHHHHHHhHHHHhcCcceeeccc
Confidence 36889999944 6678899999999988888876643221 11111 111111136899999999
Q ss_pred CCCCCCCccH
Q 045702 228 LDIMDRGTNA 237 (728)
Q Consensus 228 ~D~~~~~~~~ 237 (728)
+|......+.
T Consensus 131 Id~p~a~se~ 140 (193)
T KOG0077|consen 131 IDIPYAASED 140 (193)
T ss_pred ccCCCcccHH
Confidence 9998765543
No 373
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.34 E-value=0.0094 Score=59.96 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=49.3
Q ss_pred CeEEEeC-CCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH-HHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDL-PGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD-ALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDt-PGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~-~l~l~~~~d~~~~rti~VltK~D 229 (728)
++.+||| .|+-+ +-+.-++..|.+|.+|.++...+.+++ +.+|+.++. -+|+.+|+||+|
T Consensus 135 e~VivDtEAGiEH----------------fgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~ 196 (255)
T COG3640 135 EVVIVDTEAGIEH----------------FGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVD 196 (255)
T ss_pred cEEEEecccchhh----------------hccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence 5788898 57542 223446778866666655555554433 234455544 389999999998
Q ss_pred CCCCCccHHHhHcCCCcccCCceeEeecCCh
Q 045702 230 IMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260 (728)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~ 260 (728)
-. . ..+.....-+++.+.++.-.++
T Consensus 197 e~--e----~~~~~~~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 197 EE--E----ELLRELAEELGLEVLGVIPYDP 221 (255)
T ss_pred ch--h----HHHHhhhhccCCeEEEEccCCH
Confidence 75 1 2222223334555566665554
No 374
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.29 E-value=0.0087 Score=65.50 Aligned_cols=87 Identities=14% Similarity=0.249 Sum_probs=53.8
Q ss_pred CcccceEEEEEecCC--CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHH
Q 045702 135 GVSEKQIGLKISSPN--VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAR 212 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~--~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~ 212 (728)
.+-...+++.+...+ ...|.||||||-.+-. -+ +.+.+..+...+|+| +|++++..|..-..-.
T Consensus 58 TIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs------------YE-VSRSLAACEGalLvV-DAsQGveAQTlAN~Yl 123 (603)
T COG0481 58 TIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS------------YE-VSRSLAACEGALLVV-DASQGVEAQTLANVYL 123 (603)
T ss_pred eEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE------------EE-ehhhHhhCCCcEEEE-ECccchHHHHHHHHHH
Confidence 344455666666543 2369999999976321 11 233455666455555 5678887766433333
Q ss_pred HhCCCCCceEEeeccCCCCCCCcc
Q 045702 213 EADPTGSRTIGVITKLDIMDRGTN 236 (728)
Q Consensus 213 ~~d~~~~rti~VltK~D~~~~~~~ 236 (728)
.++ .+.-+|-|+||+|+.....+
T Consensus 124 Ale-~~LeIiPViNKIDLP~Adpe 146 (603)
T COG0481 124 ALE-NNLEIIPVLNKIDLPAADPE 146 (603)
T ss_pred HHH-cCcEEEEeeecccCCCCCHH
Confidence 344 46789999999999765433
No 375
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.23 Score=54.61 Aligned_cols=75 Identities=24% Similarity=0.213 Sum_probs=50.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHH-HHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIM-AYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
++.||||.|-.+. . ++.+.++.. .-.-+|+ =+|+|++|.. -|++...|+.++..-.=|=+|+||.|-
T Consensus 184 DvvIvDTAGRl~i-----d---e~Lm~El~~Ik~~~~P~-E~llVvDam~---GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 184 DVVIVDTAGRLHI-----D---EELMDELKEIKEVINPD-ETLLVVDAMI---GQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CEEEEeCCCcccc-----c---HHHHHHHHHHHhhcCCC-eEEEEEeccc---chHHHHHHHHHhhhcCCceEEEEcccC
Confidence 6899999997643 1 223333321 2234566 3455555543 488899999999877778899999999
Q ss_pred CCCCccHH
Q 045702 231 MDRGTNAC 238 (728)
Q Consensus 231 ~~~~~~~~ 238 (728)
-.+|--+.
T Consensus 252 daRGGaAL 259 (451)
T COG0541 252 DARGGAAL 259 (451)
T ss_pred CCcchHHH
Confidence 88876654
No 376
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.10 E-value=0.011 Score=59.96 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCC-CCcccH-HHHHHHHHhCCCCCceEEeeccC
Q 045702 175 ARIRKMIMAYIRQENCIILAVSPAN-SDLATS-DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 175 ~~~~~~~~~yi~~~~~iIL~V~~a~-~d~~~~-~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.-.+++..+.+|. +||+=-|.. -|..+. ..+.+++++......|++++|.=
T Consensus 148 qQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 148 QQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 455567788888888 788776643 344433 35678888876667899999873
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=96.01 E-value=0.011 Score=64.73 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.++++|.+++|||||+|+|+|..-
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 378
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=95.88 E-value=0.0033 Score=56.91 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=51.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC-Cccc-HHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS-DLAT-SDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~-d~~~-~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.+|||.| ++.++.++..|.+.+|+++|+..-+|. .+.| +.|+.-+.++........++-||+|
T Consensus 48 klqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d 114 (192)
T KOG0083|consen 48 KLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCD 114 (192)
T ss_pred EEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccc
Confidence 489999999 458899999999999988888876653 2222 3345556666666677889999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+...
T Consensus 115 ~a~e 118 (192)
T KOG0083|consen 115 LAHE 118 (192)
T ss_pred cchh
Confidence 9753
No 379
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.83 E-value=0.019 Score=61.48 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.|.+||-+|+||||+||.|-...+
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 478899999999999999976654
No 380
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.73 E-value=0.077 Score=55.65 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=27.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeee
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVN 89 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~ 89 (728)
-|.+||.---|||||..||+|.-- -+.+ --.++-+.|+|..
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~hs-eElkRgitIkLGY 52 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DRHS-EELKRGITIKLGY 52 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-echh-HHHhcCcEEEecc
Confidence 489999999999999999999742 1111 1234455555543
No 381
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.083 Score=56.16 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCC----C--CcccChH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLP----G--KRFFDFT 116 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~----g--~~~~d~~ 116 (728)
-++-+++-||.---||||||-.|+-..- ...+ +.+... +.. | -...||.
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk----------~i~e--------------DQla~l-~~dS~~~~t~g~~~D~A 58 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTK----------AIYE--------------DQLASL-ERDSKRKGTQGEKIDLA 58 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcch----------hhhH--------------HHHHHH-hcccccccCCCCccchh
Confidence 4567899999999999999999874321 0000 111111 111 1 1224666
Q ss_pred HHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEe
Q 045702 117 KVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS 196 (728)
Q Consensus 117 ~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~ 196 (728)
-+-+-++.+- ..|++-|+-.-. ++..--.+.+.||||-- +..++|+... +-++..||+|
T Consensus 59 LLvDGL~AER------EQGITIDVAYRy-FsT~KRkFIiADTPGHe------------QYTRNMaTGA-STadlAIlLV- 117 (431)
T COG2895 59 LLVDGLEAER------EQGITIDVAYRY-FSTEKRKFIIADTPGHE------------QYTRNMATGA-STADLAILLV- 117 (431)
T ss_pred hhhhhhHHHH------hcCceEEEEeee-cccccceEEEecCCcHH------------HHhhhhhccc-ccccEEEEEE-
Confidence 5555444332 123333332222 23333478999999943 3556666543 4566455544
Q ss_pred cCCCCcccHHHHH-HHHHhCCCCC-ceEEeeccCCCCCCCcc
Q 045702 197 PANSDLATSDALQ-MAREADPTGS-RTIGVITKLDIMDRGTN 236 (728)
Q Consensus 197 ~a~~d~~~~~~l~-l~~~~d~~~~-rti~VltK~D~~~~~~~ 236 (728)
+|..++-.|.-.. ++-.+ .|. .+++.+||+|+++-.++
T Consensus 118 DAR~Gvl~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 118 DARKGVLEQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ecchhhHHHhHHHHHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 5666766655221 22222 244 46678999999986654
No 382
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.066 Score=49.60 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=50.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---ccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---ATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.++|+-|-. .++...+-|..+.+++|++|.+++.|- +..+-..++++-.-.+...+++.||.
T Consensus 63 k~~vwdLggqt-------------SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKq 129 (182)
T KOG0072|consen 63 KFQVWDLGGQT-------------SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQ 129 (182)
T ss_pred cceeeEccCcc-------------cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccc
Confidence 47899999855 456788899999999999998887542 33332334444333467788999999
Q ss_pred CCCCCCc
Q 045702 229 DIMDRGT 235 (728)
Q Consensus 229 D~~~~~~ 235 (728)
|....-+
T Consensus 130 D~~~~~t 136 (182)
T KOG0072|consen 130 DYSGALT 136 (182)
T ss_pred cchhhhh
Confidence 9875443
No 383
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.03 Score=59.99 Aligned_cols=76 Identities=25% Similarity=0.270 Sum_probs=46.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||.|-.+ |..++-+...+ +.+.+. || -|++|.+|+.+ +.+...++.+...-.-+-+++||.|--
T Consensus 185 dvIIvDTSGRh~-----qe~sLfeEM~~-v~~ai~-Pd-~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 185 DVIIVDTSGRHK-----QEASLFEEMKQ-VSKAIK-PD-EIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cEEEEeCCCchh-----hhHHHHHHHHH-HHhhcC-CC-eEEEEEecccc---HhHHHHHHHHHHhhccceEEEEecccC
Confidence 689999999653 22333222222 234444 56 45556666554 344556666655445677899999998
Q ss_pred CCCccHH
Q 045702 232 DRGTNAC 238 (728)
Q Consensus 232 ~~~~~~~ 238 (728)
.+|--+.
T Consensus 254 akGGgAl 260 (483)
T KOG0780|consen 254 AKGGGAL 260 (483)
T ss_pred CCCCcee
Confidence 7775543
No 384
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.02 E-value=0.027 Score=60.18 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=42.1
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
+.||||-|-- .-.+..++..+. +.| -.|+|+.|+.+...-. .+-+--.-.-+.|+|+|+||+|+.
T Consensus 203 VsfVDtvGHE------------pwLrTtirGL~gqk~d-YglLvVaAddG~~~~t-kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 203 VSFVDTVGHE------------PWLRTTIRGLLGQKVD-YGLLVVAADDGVTKMT-KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred EEEEecCCcc------------HHHHHHHHHHhccccc-eEEEEEEccCCcchhh-hHhhhhhhhhcCCEEEEEEecccC
Confidence 6899999943 234444555554 445 6666777776654333 222222222358999999999999
Q ss_pred CCC
Q 045702 232 DRG 234 (728)
Q Consensus 232 ~~~ 234 (728)
+..
T Consensus 269 ~dd 271 (527)
T COG5258 269 PDD 271 (527)
T ss_pred cHH
Confidence 754
No 385
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.86 E-value=0.028 Score=44.85 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
..+|.|+.+|||||++.||.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 386
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.84 E-value=0.21 Score=57.79 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCC-CCceEEeecc
Q 045702 174 EARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPT-GSRTIGVITK 227 (728)
Q Consensus 174 ~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-~~rti~VltK 227 (728)
+.+.-.+++..+++++ ||+.+.++..+.......+.+.+... ..+|+++++.
T Consensus 475 QrQRiaiARall~~~~--iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 475 ERQRLALARALLADAP--ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHHHHhcCCC--EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456678999999998 55566666555444434444444432 4689888875
No 387
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.83 E-value=0.025 Score=54.86 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
+++|+|+.+||||||+|-|.|... |.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 689999999999999999999874 7643
No 388
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=94.74 E-value=0.043 Score=52.41 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 177 IRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 177 ~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
++++.+.++.++| ++++|++++......+ ..+.+.+...+.+.++|+||+|+.+
T Consensus 2 ~~~~~~~i~~~aD-~vl~V~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESD-VVLEVLDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCC-EEEEEeeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 5678888899999 5555666654433333 3444444445789999999999964
No 389
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.70 E-value=0.027 Score=56.00 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCccc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRG 74 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~ 74 (728)
-|.|+|..+||||||+|+|.|.- .|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 48999999999999999999984 4543
No 390
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.39 E-value=0.039 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|+.+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 391
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.37 E-value=0.1 Score=55.47 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=51.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHH---HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEA---RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~---~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
++.||||.|--++.. .+-+ .+..++...+..+-.=+|+|.+|..+ ++++.-++.+...-.=+-+|+||+
T Consensus 223 DvvliDTAGRLhnk~-----nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG---qnal~QAk~F~eav~l~GiIlTKl 294 (340)
T COG0552 223 DVVLIDTAGRLHNKK-----NLMDELKKIVRVIKKDDPDAPHEILLVLDATTG---QNALSQAKIFNEAVGLDGIILTKL 294 (340)
T ss_pred CEEEEeCcccccCch-----hHHHHHHHHHHHhccccCCCCceEEEEEEcccC---hhHHHHHHHHHHhcCCceEEEEec
Confidence 689999999764421 2222 33344444444333347778777655 667888888877656678999999
Q ss_pred CCCCCCccH
Q 045702 229 DIMDRGTNA 237 (728)
Q Consensus 229 D~~~~~~~~ 237 (728)
|-..+|-..
T Consensus 295 DgtAKGG~i 303 (340)
T COG0552 295 DGTAKGGII 303 (340)
T ss_pred ccCCCccee
Confidence 977766543
No 392
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=94.35 E-value=0.25 Score=57.78 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.|+++|+.|+|||||++.|+|.-
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999975
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.32 E-value=0.032 Score=51.82 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..++|||||+++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999999985
No 394
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=0.95 Score=56.30 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 41 SKISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 41 ~~~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
--.++|=-+|||.+++||||+|..- |.+|
T Consensus 121 ~lyeLPWy~viG~pgsGKTtal~~s-gl~F 149 (1188)
T COG3523 121 YLYELPWYMVIGPPGSGKTTALLNS-GLQF 149 (1188)
T ss_pred hhhcCCceEEecCCCCCcchHHhcc-cccC
Confidence 3468999999999999999988764 6665
No 395
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=94.28 E-value=0.053 Score=57.62 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-+++|||.--+||||||--|+--.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecc
Confidence 489999999999999998887544
No 396
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.11 Score=54.78 Aligned_cols=131 Identities=20% Similarity=0.348 Sum_probs=87.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAET 126 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~ 126 (728)
.|.-||.---||+||--||+..- .. ..+-.+..|++|.+.-++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkil--a~---------------------------------~g~A~~~kydeID~APEE-- 98 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKIL--AE---------------------------------KGGAKFKKYDEIDKAPEE-- 98 (449)
T ss_pred cccccccccCCchhHHHHHHHHH--Hh---------------------------------ccccccccHhhhhcChhh--
Confidence 46779999999999999998542 10 012234456666543322
Q ss_pred hhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-ccH
Q 045702 127 NKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-ATS 205 (728)
Q Consensus 127 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~~~ 205 (728)
...++.-+.-.|+++.+.. +..=+|.||-. +.+++|+....+= |..||+|......+ .+.
T Consensus 99 -----kaRGITIn~aHveYeTa~R-hYaH~DCPGHA------------DYIKNMItGaaqM-DGaILVVaatDG~MPQTr 159 (449)
T KOG0460|consen 99 -----KARGITINAAHVEYETAKR-HYAHTDCPGHA------------DYIKNMITGAAQM-DGAILVVAATDGPMPQTR 159 (449)
T ss_pred -----hhccceEeeeeeeeecccc-ccccCCCCchH------------HHHHHhhcCcccc-CceEEEEEcCCCCCcchH
Confidence 1256666777777777654 57889999955 3677777665443 44677776554333 444
Q ss_pred HHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 206 DALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 206 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
+=+-||+++.- .++++.+||.|+++..+
T Consensus 160 EHlLLArQVGV--~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 160 EHLLLARQVGV--KHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHHHHHHcCC--ceEEEEEecccccCCHH
Confidence 55778999874 78889999999996543
No 397
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.14 E-value=0.062 Score=50.51 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=35.1
Q ss_pred HHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC--CCCceEEeeccCCCCCC
Q 045702 180 MIMAYIRQENCIILAVSPANSDLATSDALQMAREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 180 ~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
.+.+.++.+| ++|+|+++.......+ ..+.+.+.. .+.+.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD-~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSD-IVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCC-EEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 4567889999 6666667766555443 333443332 37899999999999754
No 398
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.02 E-value=0.079 Score=56.12 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..|+||||++..|.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 399
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.97 E-value=0.032 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999854
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.92 E-value=0.8 Score=45.76 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.+++.|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 401
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.86 E-value=0.4 Score=52.28 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-++|+|||+..||||||..-|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 4679999999999999998888754
No 402
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.85 E-value=0.047 Score=51.48 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.|.|||..+||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999854
No 403
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.78 E-value=0.063 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|..+|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 404
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.29 Score=55.15 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC--CCCceEEeeccCCCCCCC
Q 045702 175 ARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADP--TGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 175 ~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~D~~~~~ 234 (728)
.+.-.+.+..++++. |++.+.|+..+....-..+++.+-. .++-+|.|+-..|+...-
T Consensus 493 kQrvslaRa~lKda~--Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAP--ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred HHHHHHHHHHhcCCC--eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC
Confidence 466678888999887 5666666655543332444444422 355567788777776543
No 405
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.061 Score=54.94 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCccc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRG 74 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~ 74 (728)
-|++||+.|+||||||+.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 489999999999999999999873 543
No 406
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.69 E-value=0.6 Score=54.88 Aligned_cols=25 Identities=44% Similarity=0.727 Sum_probs=22.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
.+++||+.|||||||++.|+|.- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 58999999999999999999974 64
No 407
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.66 E-value=0.06 Score=51.69 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDIC 78 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 78 (728)
-+.+||+.+|||||||++|.++ ++-+.|.+
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v 63 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTV 63 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeE
Confidence 5899999999999999999987 34444443
No 408
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.61 E-value=0.049 Score=53.17 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRP 82 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p 82 (728)
-||+.|+.++|||||+.+|+...-+--+...+||-|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 389999999999999999997653333444566655
No 409
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.57 E-value=0.061 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|..+|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999986
No 410
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=93.36 E-value=0.44 Score=51.37 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.+|-.+|.|--+||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4688999999999999999999854
No 411
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.32 E-value=0.072 Score=53.36 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=26.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC-CCcccCCcccccc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD-FLPRGCDICTRRP 82 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~-~lP~~~~~~Tr~p 82 (728)
-|+|+|..+||||||++.|.+.. .+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 48999999999999999999852 1123334566666
No 412
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.31 E-value=0.076 Score=53.48 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 413
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.21 E-value=0.1 Score=50.96 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=26.9
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHh-CCCCCcccC
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALV-GRDFLPRGC 75 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~-g~~~lP~~~ 75 (728)
.+..|--+++|..++|||||||||. |..|.+.|.
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg 68 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGG 68 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccccccCC
Confidence 4667888999999999999999997 445545444
No 414
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.16 E-value=0.078 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 415
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.13 E-value=0.098 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|||||||+++|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999865
No 416
>PRK01889 GTPase RsgA; Reviewed
Probab=93.13 E-value=0.047 Score=59.85 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=33.1
Q ss_pred hhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 185 IRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 185 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..+.| .+++|++++.++.....-+++-.+...+.+.++|+||+|+++.
T Consensus 110 aANvD-~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVD-TVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCC-EEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 45667 4666667766776544445555554557788999999999865
No 417
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.12 E-value=0.08 Score=53.60 Aligned_cols=23 Identities=52% Similarity=0.706 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.|||||||+++|+|.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 418
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.09 E-value=0.086 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+|||||++++|+|.-
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999974
No 419
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.088 Score=53.05 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999963
No 420
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.90 E-value=0.94 Score=54.56 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|+|||||++.|.|.-
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 69999999999999999999974
No 421
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.1 Score=51.98 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
.++|+|+.++||||||.+|+|.- .|.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel-~p~ 54 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGEL-SPD 54 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCcc-CCC
Confidence 68999999999999999999983 454
No 422
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.88 E-value=0.095 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 423
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.83 E-value=0.085 Score=51.82 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHh---CCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALV---GRD 69 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~---g~~ 69 (728)
+.|.|+|+|.++|||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 46889999999999999999998 654
No 424
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.83 E-value=0.095 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 425
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=92.82 E-value=0.2 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+--|.|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 336899999999999999999974
No 426
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.81 E-value=0.1 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.79 E-value=2.1 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.++|||||+..|.+..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 69999999999999999998543
No 428
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.76 E-value=0.12 Score=49.56 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHhhcCCeEEEEEecCCCCccc--HHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 182 MAYIRQENCIILAVSPANSDLAT--SDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 182 ~~yi~~~~~iIL~V~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+.++++| +|++|+++...... ....+.++.. ..+.|.|+|+||+|+.++
T Consensus 3 ~~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 3 YKVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hHhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 45678899 77777777665433 2333444433 235899999999999754
No 429
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.73 E-value=0.11 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999984
No 430
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.72 E-value=0.1 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 431
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.71 E-value=0.11 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.71 E-value=0.09 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..++|||||+++|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999999974
No 433
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.66 E-value=0.072 Score=55.20 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCcee
Q 045702 174 EARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYV 253 (728)
Q Consensus 174 ~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 253 (728)
.+....+++.|+++.|.+++++...+.+..-....+++..+...+.+.++|+||+|+.+......+.+. .....+..++
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~v~ 101 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQVL 101 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCeEE
Confidence 345566777899999965555543333333222233333343457899999999999754322111111 0011234456
Q ss_pred EeecCChhhh
Q 045702 254 GVVNRSQEDI 263 (728)
Q Consensus 254 ~v~~rs~~~~ 263 (728)
.++......+
T Consensus 102 ~~SAktg~gi 111 (245)
T TIGR00157 102 MTSSKNQDGL 111 (245)
T ss_pred EEecCCchhH
Confidence 6666655443
No 434
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.64 E-value=0.1 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 435
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.61 E-value=0.11 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 436
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.59 E-value=0.099 Score=56.83 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=24.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCccc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 79 (728)
.|+|+|.+||||||++++|++. +|.+..++|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 4999999999999999999975 365444443
No 437
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.59 E-value=0.12 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||+++|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 438
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.58 E-value=0.1 Score=53.48 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 439
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.53 E-value=0.1 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 440
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.53 E-value=0.091 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999974
No 441
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.52 E-value=0.11 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 442
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=92.49 E-value=1.7 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.|+++|+.|||||||++.|+|.-
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 69999999999999999999974
No 443
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.47 E-value=0.11 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999999974
No 444
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=92.43 E-value=0.21 Score=50.11 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=42.4
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-----ccHHHHHHHHHhCCCCCceEEeecc
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-----ATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-----~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
|.++|--|- ...++......-....++.+++|.++.....++ ..+.+++.+.+..| ..+++..++|
T Consensus 55 LnlwDcGgq--------e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hK 125 (295)
T KOG3886|consen 55 LNLWDCGGQ--------EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHK 125 (295)
T ss_pred eehhccCCc--------HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEee
Confidence 678998772 122222222222233445564444443333322 12334566666677 4789999999
Q ss_pred CCCCCCCccH
Q 045702 228 LDIMDRGTNA 237 (728)
Q Consensus 228 ~D~~~~~~~~ 237 (728)
.|++..+...
T Consensus 126 mDLv~~d~r~ 135 (295)
T KOG3886|consen 126 MDLVQEDARE 135 (295)
T ss_pred chhcccchHH
Confidence 9999876553
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.39 E-value=0.12 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999996
No 446
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.36 E-value=0.13 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 447
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.34 E-value=0.13 Score=52.15 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGCDIC 78 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~ 78 (728)
.++++|+.+||||||++.|+|.. |-.+|-+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 47899999999999999999974 3344543
No 448
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.33 E-value=0.12 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.++|||||+++|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999974
No 449
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.33 E-value=0.12 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 450
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.32 E-value=0.66 Score=49.08 Aligned_cols=59 Identities=19% Similarity=0.426 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEE
Q 045702 23 IPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALM 86 (728)
Q Consensus 23 ~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~ 86 (728)
..++++|.+++..- .....|-+++||+.|-|||++++.+.... .|...+-...+|....
T Consensus 43 ~~~L~~L~~Ll~~P----~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~v 101 (302)
T PF05621_consen 43 KEALDRLEELLEYP----KRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYV 101 (302)
T ss_pred HHHHHHHHHHHhCC----cccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEE
Confidence 35566666655433 35678999999999999999999998653 3444444566776553
No 451
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.31 E-value=0.12 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..++|||||+++|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999974
No 452
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.26 E-value=0.11 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.24 E-value=0.14 Score=48.90 Aligned_cols=24 Identities=46% Similarity=0.616 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
..++++|+.++|||||+++|.|.-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999974
No 454
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=92.23 E-value=0.92 Score=54.64 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeecc
Q 045702 174 EARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 174 ~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
+.+.-.+++..+++++ ||+.+.++..+.......+.+.+.. ..+|++++|.
T Consensus 620 QrQRiaLARall~~p~--iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitH 670 (710)
T TIGR03796 620 QRQRLEIARALVRNPS--ILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAH 670 (710)
T ss_pred HHHHHHHHHHHhhCCC--EEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEec
Confidence 3456678899999998 4555666555544444555555554 3578888775
No 455
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.22 E-value=0.14 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||+..|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 456
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.22 E-value=0.13 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..++|||||++.|.|..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 457
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.22 E-value=0.13 Score=42.02 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 458
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.21 E-value=0.12 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||+++|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 58999999999999999999974
No 459
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.20 E-value=0.13 Score=52.73 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..|||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999973
No 460
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.19 E-value=0.14 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++++|+.++|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999974
No 461
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.19 E-value=0.13 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 462
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.15 E-value=0.12 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 463
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.15 E-value=0.14 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++++|..+||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 464
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.14 E-value=0.11 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 465
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.14 E-value=0.11 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 466
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.13 E-value=0.12 Score=52.49 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..|||||||++.|.|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 467
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.13 E-value=0.13 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999974
No 468
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=92.10 E-value=0.23 Score=48.27 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+.+.+...++++| +||+|+++.......+ ..++..+. +.+.|+|+||+|+.+.
T Consensus 8 ~~~~~~~~~i~~aD-~il~v~D~~~~~~~~~-~~i~~~~~--~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 8 KALRQIKEKLKLVD-LVIEVRDARIPLSSRN-PLLEKILG--NKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHHHHhhCC-EEEEEeeccCccCcCC-hhhHhHhc--CCCEEEEEehhhcCCh
Confidence 44456688999999 7777777765544333 33444442 5789999999999643
No 469
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.10 E-value=0.15 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 470
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.10 E-value=0.12 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.++|+|+.+|||||||++|++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999963
No 471
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.10 E-value=0.13 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 472
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.09 E-value=0.13 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999974
No 473
>PRK12289 GTPase RsgA; Reviewed
Probab=92.08 E-value=0.13 Score=56.10 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 178 RKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 178 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..+.+.++.+.|.+++++...+.++......+++..+...+.+.|+|+||+|+++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 35566778999954444443333333322234444444467999999999999854
No 474
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.14 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 475
>PLN03232 ABC transporter C family member; Provisional
Probab=92.04 E-value=2 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|||+.|||||||+++|+|.-
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999974
No 476
>PRK13695 putative NTPase; Provisional
Probab=92.03 E-value=0.49 Score=46.09 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEEEecCC-CCcccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 172 DIEARIRKMIMAYIRQENCIILAVSPAN-SDLATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 172 ~~~~~~~~~~~~yi~~~~~iIL~V~~a~-~d~~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
..+.....++...+..++ + +++.... .+.......+.+..+-..+.++|+|++|.
T Consensus 81 gle~~~~~l~~~~l~~~~-~-lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 81 DLERIGIPALERALEEAD-V-IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred HHHHHHHHHHHhccCCCC-E-EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 344556666777777787 3 4454321 12222233555665556688999999984
No 477
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.02 E-value=0.13 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.++|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999975
No 478
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=92.02 E-value=0.13 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|.-
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 59999999999999999999974
No 479
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.01 E-value=0.14 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 480
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.01 E-value=0.14 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 481
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.01 E-value=0.15 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..++|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 482
>PRK10908 cell division protein FtsE; Provisional
Probab=91.97 E-value=0.14 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 483
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.96 E-value=0.14 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.+||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 484
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.96 E-value=0.12 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 485
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.14 Score=52.51 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999974
No 486
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.94 E-value=0.13 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 487
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.91 E-value=0.15 Score=51.71 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|+.+||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999974
No 488
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=91.85 E-value=0.13 Score=53.14 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-++|||+.+||||||+.+|+|.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999995
No 489
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.84 E-value=0.15 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|..+||||||++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999996
No 490
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.84 E-value=0.16 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|.-
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 491
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.83 E-value=0.16 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999974
No 492
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.82 E-value=0.15 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999984
No 493
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.81 E-value=0.15 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|..
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.80 E-value=0.14 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 495
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.79 E-value=0.13 Score=48.12 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|.++|||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999743
No 496
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.79 E-value=0.13 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999974
No 497
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.78 E-value=0.17 Score=51.03 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||+..|+|..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 498
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.76 E-value=0.13 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|-|+|+|..+||||||+++|++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4678999999999999999999975
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.76 E-value=0.14 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-|+++|..|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999998763
No 500
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.75 E-value=0.16 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||++.|+|..
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
Done!