Query 045702
Match_columns 728
No_of_seqs 429 out of 2670
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 2E-109 7E-114 963.0 55.0 695 13-724 20-769 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.1E-88 3.7E-93 787.5 53.4 579 20-721 22-607 (608)
3 3t34_A Dynamin-related protein 100.0 3.3E-48 1.1E-52 423.1 29.8 320 19-343 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 1.5E-46 5.2E-51 408.7 34.7 340 15-362 2-344 (353)
5 3ljb_A Interferon-induced GTP- 100.0 1.5E-40 5E-45 340.8 21.4 264 343-696 4-271 (271)
6 1jwy_B Dynamin A GTPase domain 100.0 5.5E-39 1.9E-43 343.4 31.2 314 20-335 1-315 (315)
7 2aka_B Dynamin-1; fusion prote 100.0 1.1E-36 3.9E-41 322.7 34.1 299 19-325 1-299 (299)
8 2j69_A Bacterial dynamin-like 99.8 2.6E-18 8.9E-23 201.5 20.5 171 44-234 68-246 (695)
9 1wf3_A GTP-binding protein; GT 99.5 1.5E-13 5.1E-18 145.3 12.5 124 45-234 7-133 (301)
10 3iev_A GTP-binding protein ERA 99.5 7E-13 2.4E-17 140.7 17.7 125 45-232 10-136 (308)
11 4dhe_A Probable GTP-binding pr 99.4 4.6E-13 1.6E-17 134.4 10.7 129 43-233 27-159 (223)
12 3t5d_A Septin-7; GTP-binding p 99.4 1.5E-12 5.2E-17 135.7 12.7 137 46-234 9-160 (274)
13 3pqc_A Probable GTP-binding pr 99.4 3.8E-12 1.3E-16 124.3 13.9 125 42-233 20-148 (195)
14 1svi_A GTP-binding protein YSX 99.4 2.8E-12 9.4E-17 125.7 12.6 125 43-234 21-150 (195)
15 2qpt_A EH domain-containing pr 99.4 1.5E-12 5.2E-17 148.5 11.7 166 44-234 64-234 (550)
16 3iby_A Ferrous iron transport 99.3 1.6E-12 5.3E-17 134.3 7.9 148 45-262 1-153 (256)
17 2dyk_A GTP-binding protein; GT 99.3 3.3E-12 1.1E-16 120.7 9.2 74 152-233 50-123 (161)
18 4dcu_A GTP-binding protein ENG 99.3 1.3E-11 4.6E-16 138.1 14.4 152 21-235 171-323 (456)
19 2hjg_A GTP-binding protein ENG 99.3 1.4E-11 4.7E-16 137.2 13.9 152 21-235 151-303 (436)
20 3lxx_A GTPase IMAP family memb 99.3 7.7E-12 2.6E-16 127.5 11.0 129 43-234 27-161 (239)
21 1ega_A Protein (GTP-binding pr 99.3 1.5E-12 5.2E-17 137.7 5.1 122 44-232 7-130 (301)
22 1zbd_A Rabphilin-3A; G protein 99.3 1.2E-11 4.2E-16 122.0 11.3 68 152-233 58-128 (203)
23 2lkc_A Translation initiation 99.3 6.6E-12 2.3E-16 120.8 8.4 118 42-233 5-122 (178)
24 2g6b_A RAS-related protein RAB 99.3 1.2E-11 4.3E-16 119.1 10.0 119 45-233 10-131 (180)
25 1kao_A RAP2A; GTP-binding prot 99.2 1.3E-11 4.5E-16 116.9 9.0 68 152-233 52-123 (167)
26 2f7s_A C25KG, RAS-related prot 99.2 5.4E-11 1.9E-15 118.8 13.7 67 152-232 85-155 (217)
27 2fn4_A P23, RAS-related protei 99.2 1.4E-11 4.6E-16 118.7 8.9 118 44-233 8-129 (181)
28 2hjg_A GTP-binding protein ENG 99.2 2.3E-11 7.7E-16 135.4 11.9 123 45-233 3-126 (436)
29 4dcu_A GTP-binding protein ENG 99.2 1.3E-11 4.4E-16 138.2 9.9 126 42-233 20-146 (456)
30 3tkl_A RAS-related protein RAB 99.2 1.4E-11 4.8E-16 120.6 8.9 70 152-234 66-137 (196)
31 3clv_A RAB5 protein, putative; 99.2 2.2E-11 7.6E-16 119.4 10.2 28 44-71 6-33 (208)
32 3q72_A GTP-binding protein RAD 99.2 1E-11 3.4E-16 118.1 7.3 68 152-233 50-121 (166)
33 2oil_A CATX-8, RAS-related pro 99.2 2.5E-11 8.5E-16 118.8 10.2 68 152-233 75-145 (193)
34 1mky_A Probable GTP-binding pr 99.2 1.7E-11 5.9E-16 136.5 10.1 123 45-232 1-124 (439)
35 3lxw_A GTPase IMAP family memb 99.2 2.7E-11 9.3E-16 124.3 10.9 126 45-232 21-153 (247)
36 3tw8_B RAS-related protein RAB 99.2 7.1E-12 2.4E-16 120.7 6.1 27 44-70 8-34 (181)
37 1u8z_A RAS-related protein RAL 99.2 2E-11 6.9E-16 115.7 9.2 68 152-233 53-124 (168)
38 2qu8_A Putative nucleolar GTP- 99.2 6.1E-11 2.1E-15 119.7 13.2 128 43-233 27-157 (228)
39 1z0f_A RAB14, member RAS oncog 99.2 2.5E-11 8.5E-16 116.6 9.8 68 152-233 65-135 (179)
40 1xzp_A Probable tRNA modificat 99.2 6.8E-11 2.3E-15 132.5 14.8 120 46-233 244-365 (482)
41 1z0j_A RAB-22, RAS-related pro 99.2 1.4E-11 4.6E-16 117.4 7.7 68 152-233 56-126 (170)
42 2a9k_A RAS-related protein RAL 99.2 2.6E-11 8.8E-16 117.4 9.7 119 43-233 16-138 (187)
43 3cph_A RAS-related protein SEC 99.2 3.7E-11 1.3E-15 119.4 10.6 118 44-231 19-138 (213)
44 2qtf_A Protein HFLX, GTP-bindi 99.2 7.4E-11 2.5E-15 127.8 13.4 127 43-234 177-308 (364)
45 2xtp_A GTPase IMAP family memb 99.2 9.2E-11 3.1E-15 121.0 13.4 127 43-232 20-153 (260)
46 1c1y_A RAS-related protein RAP 99.2 2.5E-11 8.5E-16 115.2 8.3 69 152-233 52-123 (167)
47 3bc1_A RAS-related protein RAB 99.2 4.1E-11 1.4E-15 116.6 10.0 67 152-232 71-141 (195)
48 3dz8_A RAS-related protein RAB 99.2 3.1E-11 1.1E-15 118.1 9.1 69 152-233 73-143 (191)
49 1z08_A RAS-related protein RAB 99.2 1.4E-11 4.8E-16 117.5 6.4 68 152-233 56-126 (170)
50 1h65_A Chloroplast outer envel 99.2 8.1E-11 2.8E-15 122.3 12.7 126 44-234 38-170 (270)
51 2erx_A GTP-binding protein DI- 99.2 1.6E-11 5.3E-16 117.1 6.6 69 152-233 52-124 (172)
52 1ek0_A Protein (GTP-binding pr 99.2 1.9E-11 6.6E-16 116.2 7.2 68 152-233 53-123 (170)
53 2y8e_A RAB-protein 6, GH09086P 99.2 1.4E-11 4.9E-16 118.3 6.3 69 152-233 64-134 (179)
54 2efe_B Small GTP-binding prote 99.2 2E-11 6.7E-16 117.8 7.3 69 152-234 62-133 (181)
55 2il1_A RAB12; G-protein, GDP, 99.2 3.5E-11 1.2E-15 118.0 9.2 68 152-233 76-146 (192)
56 2bme_A RAB4A, RAS-related prot 99.2 2.2E-11 7.5E-16 118.2 7.7 67 152-232 60-129 (186)
57 1g16_A RAS-related protein SEC 99.2 1.6E-11 5.4E-16 117.0 6.5 67 152-231 53-121 (170)
58 2bov_A RAla, RAS-related prote 99.2 4.9E-11 1.7E-15 117.7 10.1 120 42-233 11-134 (206)
59 2nzj_A GTP-binding protein REM 99.2 3.3E-11 1.1E-15 115.4 8.7 70 152-233 53-126 (175)
60 2gf9_A RAS-related protein RAB 99.2 3.2E-11 1.1E-15 117.7 8.6 69 152-233 72-142 (189)
61 1z06_A RAS-related protein RAB 99.2 5.7E-11 1.9E-15 115.9 10.1 69 152-233 70-142 (189)
62 2yc2_C IFT27, small RAB-relate 99.2 2E-11 6.8E-16 120.6 6.8 67 152-232 74-146 (208)
63 1r8s_A ADP-ribosylation factor 99.2 1.7E-10 5.9E-15 109.2 13.0 68 152-233 45-116 (164)
64 3a1s_A Iron(II) transport prot 99.2 3.3E-11 1.1E-15 124.5 8.6 70 152-232 53-124 (258)
65 2a5j_A RAS-related protein RAB 99.2 5.1E-11 1.7E-15 116.6 9.4 68 152-232 71-140 (191)
66 1wms_A RAB-9, RAB9, RAS-relate 99.2 4E-11 1.4E-15 115.2 8.4 67 152-232 57-130 (177)
67 2ged_A SR-beta, signal recogni 99.2 1.3E-10 4.5E-15 113.5 12.2 52 18-70 22-73 (193)
68 2fg5_A RAB-22B, RAS-related pr 99.2 4.2E-11 1.4E-15 117.4 8.4 67 152-232 73-142 (192)
69 3con_A GTPase NRAS; structural 99.2 8.1E-11 2.8E-15 114.7 10.3 67 152-232 70-140 (190)
70 1zd9_A ADP-ribosylation factor 99.2 1.2E-10 4.3E-15 113.6 11.6 68 152-233 68-139 (188)
71 3geh_A MNME, tRNA modification 99.2 4.1E-11 1.4E-15 133.7 9.0 100 152-264 273-372 (462)
72 2cxx_A Probable GTP-binding pr 99.2 2.1E-10 7.1E-15 111.5 12.8 123 45-234 1-138 (190)
73 4dsu_A GTPase KRAS, isoform 2B 99.2 7.9E-11 2.7E-15 114.3 9.6 68 152-233 53-124 (189)
74 2ce2_X GTPase HRAS; signaling 99.1 3.3E-11 1.1E-15 113.8 6.6 68 152-233 52-123 (166)
75 3gee_A MNME, tRNA modification 99.1 1.9E-11 6.5E-16 136.9 5.7 75 152-234 282-359 (476)
76 1upt_A ARL1, ADP-ribosylation 99.1 1.2E-10 4.2E-15 110.9 10.6 69 152-234 52-124 (171)
77 2h57_A ADP-ribosylation factor 99.1 5.5E-11 1.9E-15 116.1 8.4 68 152-233 68-141 (190)
78 4bas_A ADP-ribosylation factor 99.1 9.8E-11 3.3E-15 114.8 10.1 118 42-233 14-142 (199)
79 3oes_A GTPase rhebl1; small GT 99.1 1.5E-11 5.3E-16 121.4 4.3 68 152-233 73-144 (201)
80 3i8s_A Ferrous iron transport 99.1 7.4E-11 2.5E-15 123.0 9.4 122 45-233 3-127 (274)
81 1z2a_A RAS-related protein RAB 99.1 1.4E-11 4.8E-16 117.1 3.5 67 152-233 55-124 (168)
82 1ksh_A ARF-like protein 2; sma 99.1 1.6E-10 5.6E-15 112.1 11.2 69 152-234 63-135 (186)
83 1ky3_A GTP-binding protein YPT 99.1 5.5E-11 1.9E-15 114.5 7.5 67 152-232 59-132 (182)
84 1r2q_A RAS-related protein RAB 99.1 6.4E-11 2.2E-15 112.6 7.8 68 152-233 56-126 (170)
85 3kkq_A RAS-related protein M-R 99.1 6.8E-11 2.3E-15 114.4 8.1 69 152-233 67-138 (183)
86 4djt_A GTP-binding nuclear pro 99.1 4.1E-11 1.4E-15 119.8 6.7 99 152-264 62-163 (218)
87 2ew1_A RAS-related protein RAB 99.1 5.3E-11 1.8E-15 118.0 7.5 68 152-232 76-145 (201)
88 2o52_A RAS-related protein RAB 99.1 5.6E-11 1.9E-15 117.4 7.5 67 152-232 75-144 (200)
89 2bcg_Y Protein YP2, GTP-bindin 99.1 6.5E-11 2.2E-15 117.2 7.7 68 152-233 58-128 (206)
90 1zj6_A ADP-ribosylation factor 99.1 2.7E-10 9.2E-15 110.9 11.9 68 152-233 61-132 (187)
91 3b1v_A Ferrous iron uptake tra 99.1 8.6E-11 2.9E-15 122.2 8.8 116 45-232 3-121 (272)
92 3q85_A GTP-binding protein REM 99.1 3.9E-11 1.3E-15 114.4 5.6 69 152-232 52-123 (169)
93 2gj8_A MNME, tRNA modification 99.1 5.2E-10 1.8E-14 107.8 13.6 76 152-232 53-129 (172)
94 3t5g_A GTP-binding protein RHE 99.1 4.4E-11 1.5E-15 115.6 5.9 69 152-234 55-127 (181)
95 2hup_A RAS-related protein RAB 99.1 1.1E-10 3.7E-15 115.5 8.9 68 152-232 79-148 (201)
96 2p5s_A RAS and EF-hand domain 99.1 9.3E-11 3.2E-15 115.6 8.3 67 152-232 78-147 (199)
97 2fu5_C RAS-related protein RAB 99.1 6.3E-11 2.2E-15 114.7 6.9 68 152-233 58-128 (183)
98 3def_A T7I23.11 protein; chlor 99.1 3.1E-10 1.1E-14 117.4 12.2 28 44-71 35-62 (262)
99 2hxs_A RAB-26, RAS-related pro 99.1 3.3E-11 1.1E-15 115.9 4.4 26 45-70 6-31 (178)
100 1x3s_A RAS-related protein RAB 99.1 8.7E-11 3E-15 114.7 7.4 67 152-232 65-135 (195)
101 2fh5_B SR-beta, signal recogni 99.1 4.6E-10 1.6E-14 111.7 12.6 120 44-235 6-132 (214)
102 2h17_A ADP-ribosylation factor 99.1 1.7E-10 5.8E-15 111.8 9.1 68 152-233 66-137 (181)
103 1vg8_A RAS-related protein RAB 99.1 6.5E-11 2.2E-15 117.0 6.1 27 45-71 8-34 (207)
104 3k53_A Ferrous iron transport 99.1 6E-11 2E-15 123.4 6.0 118 44-232 2-123 (271)
105 2b6h_A ADP-ribosylation factor 99.1 4.7E-10 1.6E-14 110.1 11.1 68 152-233 74-145 (192)
106 2wji_A Ferrous iron transport 99.1 6.9E-10 2.4E-14 105.9 11.9 70 152-232 51-122 (165)
107 3qq5_A Small GTP-binding prote 99.1 1.5E-10 5.1E-15 127.5 7.8 151 44-264 33-184 (423)
108 1moz_A ARL1, ADP-ribosylation 99.1 2.2E-10 7.5E-15 110.7 8.1 68 152-233 63-134 (183)
109 3llu_A RAS-related GTP-binding 99.1 5.6E-10 1.9E-14 109.7 11.1 120 43-233 18-144 (196)
110 2atv_A RERG, RAS-like estrogen 99.1 1.9E-10 6.6E-15 112.9 7.7 67 152-232 77-146 (196)
111 2e87_A Hypothetical protein PH 99.1 7.3E-09 2.5E-13 112.0 20.7 28 43-70 165-192 (357)
112 1fzq_A ADP-ribosylation factor 99.1 9.7E-10 3.3E-14 106.6 12.5 69 152-234 61-133 (181)
113 1lnz_A SPO0B-associated GTP-bi 99.1 8E-11 2.7E-15 126.3 5.1 125 45-233 158-289 (342)
114 1mky_A Probable GTP-binding pr 99.0 1.8E-09 6E-14 120.2 15.8 129 44-234 179-308 (439)
115 4a9a_A Ribosome-interacting GT 99.0 3.1E-10 1.1E-14 122.7 8.9 122 44-231 71-195 (376)
116 2gf0_A GTP-binding protein DI- 99.0 1.2E-10 4.2E-15 114.1 5.1 69 152-233 57-129 (199)
117 1nrj_B SR-beta, signal recogni 99.0 1.7E-09 5.9E-14 107.8 13.3 29 42-70 9-37 (218)
118 3cpj_B GTP-binding protein YPT 99.0 1.1E-10 3.7E-15 117.5 4.4 67 152-232 63-132 (223)
119 3t1o_A Gliding protein MGLA; G 99.0 6.9E-10 2.4E-14 108.3 9.7 68 152-233 75-150 (198)
120 3l0i_B RAS-related protein RAB 99.0 1.3E-11 4.4E-16 121.8 -2.8 68 152-233 83-153 (199)
121 3c5c_A RAS-like protein 12; GD 99.0 2.3E-10 7.9E-15 111.7 6.0 25 46-70 22-46 (187)
122 2x77_A ADP-ribosylation factor 99.0 3E-10 1E-14 110.6 6.6 68 152-233 67-138 (189)
123 3cbq_A GTP-binding protein REM 99.0 4.6E-10 1.6E-14 110.5 7.8 70 152-233 73-145 (195)
124 1m2o_B GTP-binding protein SAR 99.0 1.2E-09 4.1E-14 106.9 10.6 67 152-232 68-138 (190)
125 1mh1_A RAC1; GTP-binding, GTPa 99.0 2E-10 6.7E-15 111.1 4.7 68 152-233 54-124 (186)
126 3reg_A RHO-like small GTPase; 99.0 1.4E-10 4.9E-15 113.5 3.7 67 152-233 72-142 (194)
127 4gzl_A RAS-related C3 botulinu 99.0 1.3E-10 4.4E-15 115.2 3.3 68 152-234 79-150 (204)
128 2gco_A H9, RHO-related GTP-bin 99.0 1.5E-10 5.3E-15 114.2 3.8 69 152-234 74-145 (201)
129 1f6b_A SAR1; gtpases, N-termin 99.0 1.4E-09 4.7E-14 107.3 10.6 67 152-232 70-140 (198)
130 3bwd_D RAC-like GTP-binding pr 99.0 9.8E-11 3.4E-15 113.0 2.3 67 152-233 57-127 (182)
131 2q3h_A RAS homolog gene family 99.0 2.2E-10 7.6E-15 112.8 4.8 118 43-233 18-139 (201)
132 2atx_A Small GTP binding prote 99.0 2.1E-10 7E-15 112.3 4.5 68 152-233 67-137 (194)
133 2fv8_A H6, RHO-related GTP-bin 99.0 1.2E-10 4E-15 115.7 2.7 68 152-233 74-144 (207)
134 3dpu_A RAB family protein; roc 99.0 1.7E-09 5.8E-14 123.4 12.3 180 19-264 16-196 (535)
135 2wjg_A FEOB, ferrous iron tran 99.0 2E-09 6.9E-14 104.4 11.0 70 152-232 55-126 (188)
136 2j1l_A RHO-related GTP-binding 99.0 2.9E-10 9.9E-15 113.6 5.0 67 152-233 83-153 (214)
137 2iwr_A Centaurin gamma 1; ANK 99.0 7.6E-10 2.6E-14 106.5 7.6 26 45-70 7-32 (178)
138 3o47_A ADP-ribosylation factor 99.0 5.4E-09 1.9E-13 111.7 14.5 69 152-234 210-282 (329)
139 4dkx_A RAS-related protein RAB 98.9 9.8E-10 3.4E-14 110.3 8.0 69 152-233 63-133 (216)
140 2qag_A Septin-2, protein NEDD5 98.9 1.1E-09 3.8E-14 118.6 8.8 81 152-234 96-190 (361)
141 3th5_A RAS-related C3 botulinu 98.5 9.2E-11 3.2E-15 116.0 0.0 68 152-233 79-149 (204)
142 3q3j_B RHO-related GTP-binding 98.9 7.9E-10 2.7E-14 110.5 6.4 68 152-233 76-146 (214)
143 3j2k_7 ERF3, eukaryotic polype 98.9 3.9E-09 1.3E-13 117.3 12.4 83 135-233 80-170 (439)
144 2j0v_A RAC-like GTP-binding pr 98.9 2.8E-10 9.6E-15 113.1 2.8 67 152-233 58-128 (212)
145 3ihw_A Centg3; RAS, centaurin, 98.9 3.3E-09 1.1E-13 103.3 10.0 27 44-70 19-45 (184)
146 3izq_1 HBS1P, elongation facto 98.9 2.7E-09 9.3E-14 123.1 10.5 147 44-233 166-320 (611)
147 3gj0_A GTP-binding nuclear pro 98.9 2.8E-10 9.4E-15 114.1 1.8 96 152-264 65-163 (221)
148 3tr5_A RF-3, peptide chain rel 98.9 2.4E-09 8.2E-14 121.4 9.5 69 151-234 82-150 (528)
149 3lvq_E ARF-GAP with SH3 domain 98.9 4.3E-09 1.5E-13 119.0 11.0 113 46-234 323-439 (497)
150 3p26_A Elongation factor 1 alp 98.9 1.9E-09 6.5E-14 121.4 8.0 115 135-265 96-227 (483)
151 1m7b_A RND3/RHOE small GTP-bin 98.9 2E-09 6.8E-14 104.5 6.3 67 152-233 56-126 (184)
152 3r7w_A Gtpase1, GTP-binding pr 98.8 8.8E-09 3E-13 109.0 11.0 72 152-232 53-129 (307)
153 3izy_P Translation initiation 98.8 3.4E-10 1.2E-14 127.9 -0.3 117 44-233 3-119 (537)
154 1gwn_A RHO-related GTP-binding 98.8 2.9E-09 9.8E-14 105.8 6.2 67 152-233 77-147 (205)
155 3sjy_A Translation initiation 98.8 6.2E-09 2.1E-13 114.5 9.2 66 152-233 76-144 (403)
156 2g3y_A GTP-binding protein GEM 98.8 6.7E-09 2.3E-13 103.8 7.6 69 152-232 88-159 (211)
157 1wxq_A GTP-binding protein; st 98.8 4.7E-09 1.6E-13 114.9 6.9 39 47-86 2-41 (397)
158 2h5e_A Peptide chain release f 98.8 1.2E-08 4.2E-13 115.6 9.8 69 151-234 82-150 (529)
159 2wkq_A NPH1-1, RAS-related C3 98.8 5.2E-09 1.8E-13 111.2 6.1 67 152-233 204-274 (332)
160 2c78_A Elongation factor TU-A; 98.8 2E-08 6.8E-13 110.5 10.7 76 141-232 66-142 (405)
161 2qag_B Septin-6, protein NEDD5 98.7 3E-08 1E-12 108.5 11.1 82 152-235 96-193 (427)
162 2qag_C Septin-7; cell cycle, c 98.7 5.9E-08 2E-12 106.6 13.1 80 152-233 89-182 (418)
163 1zo1_I IF2, translation initia 98.7 1.8E-09 6.2E-14 121.0 0.6 67 152-233 52-118 (501)
164 2rdo_7 EF-G, elongation factor 98.7 7.7E-08 2.6E-12 112.9 14.3 69 151-234 82-150 (704)
165 1wb1_A Translation elongation 98.7 1.5E-08 5E-13 113.9 7.8 66 152-232 74-139 (482)
166 2zej_A Dardarin, leucine-rich 98.7 1.2E-08 4.1E-13 99.1 6.2 67 152-233 57-127 (184)
167 2xex_A Elongation factor G; GT 98.7 9.9E-09 3.4E-13 120.3 6.3 69 151-234 75-143 (693)
168 2cjw_A GTP-binding protein GEM 98.7 1.7E-08 5.9E-13 98.9 7.0 69 152-232 57-128 (192)
169 2ywe_A GTP-binding protein LEP 98.7 2.5E-08 8.4E-13 114.2 9.3 81 138-233 58-140 (600)
170 3cb4_D GTP-binding protein LEP 98.7 2.5E-08 8.4E-13 114.4 8.8 80 139-233 57-138 (599)
171 1g7s_A Translation initiation 98.7 4.8E-09 1.6E-13 120.4 2.7 66 152-232 71-136 (594)
172 1zun_B Sulfate adenylate trans 98.7 7E-08 2.4E-12 107.1 11.9 66 152-233 105-172 (434)
173 1pui_A ENGB, probable GTP-bind 98.7 6.6E-08 2.2E-12 95.6 10.0 78 152-234 73-153 (210)
174 2f9l_A RAB11B, member RAS onco 98.7 2E-08 6.9E-13 98.7 6.2 26 45-70 5-30 (199)
175 1d2e_A Elongation factor TU (E 98.7 4.4E-08 1.5E-12 107.4 9.5 67 151-232 66-133 (397)
176 1s0u_A EIF-2-gamma, translatio 98.6 1.1E-07 3.9E-12 104.5 12.2 67 152-234 82-151 (408)
177 1dar_A EF-G, elongation factor 98.6 3.8E-08 1.3E-12 115.3 8.0 69 151-234 77-145 (691)
178 1f60_A Elongation factor EEF1A 98.6 6.6E-08 2.3E-12 108.0 9.2 71 144-232 79-159 (458)
179 3sop_A Neuronal-specific septi 98.6 1.6E-07 5.3E-12 97.4 10.1 83 151-235 60-157 (270)
180 1kk1_A EIF2gamma; initiation o 98.6 1.2E-07 4E-12 104.5 9.4 66 152-233 84-152 (410)
181 2elf_A Protein translation elo 98.5 1.1E-07 3.7E-12 103.1 8.7 63 152-230 61-125 (370)
182 2www_A Methylmalonic aciduria 98.5 2.1E-07 7E-12 100.2 10.7 26 43-68 72-97 (349)
183 1oix_A RAS-related protein RAB 98.5 6.9E-08 2.4E-12 94.4 5.7 26 45-70 29-54 (191)
184 1jny_A EF-1-alpha, elongation 98.5 9.5E-08 3.3E-12 106.0 7.0 67 152-233 85-159 (435)
185 3vqt_A RF-3, peptide chain rel 98.5 1.4E-07 4.8E-12 107.4 8.4 136 46-235 32-169 (548)
186 1n0u_A EF-2, elongation factor 98.5 7.5E-08 2.6E-12 115.1 6.4 66 152-232 99-164 (842)
187 3ec1_A YQEH GTPase; atnos1, at 98.5 2.8E-08 9.5E-13 107.8 1.2 23 46-68 163-185 (369)
188 3p32_A Probable GTPase RV1496/ 98.4 1.3E-06 4.5E-11 94.2 13.9 24 44-67 78-101 (355)
189 2dy1_A Elongation factor G; tr 98.4 6.4E-07 2.2E-11 104.5 11.7 66 151-231 74-139 (665)
190 3avx_A Elongation factor TS, e 98.4 2.5E-07 8.6E-12 111.2 7.8 65 151-232 359-426 (1289)
191 3mca_A HBS1, elongation factor 98.4 6.5E-09 2.2E-13 119.6 -5.9 24 45-68 177-200 (592)
192 1jal_A YCHF protein; nucleotid 98.4 2.3E-07 7.7E-12 99.7 6.4 38 46-83 3-40 (363)
193 1udx_A The GTP-binding protein 98.4 3.8E-07 1.3E-11 100.1 8.1 25 45-69 157-181 (416)
194 2qnr_A Septin-2, protein NEDD5 98.4 9.8E-07 3.3E-11 92.9 10.9 81 151-233 76-170 (301)
195 3h2y_A GTPase family protein; 98.3 1.1E-07 3.6E-12 103.2 2.2 24 46-69 161-184 (368)
196 1r5b_A Eukaryotic peptide chai 98.3 3.3E-07 1.1E-11 102.5 5.6 65 152-233 122-196 (467)
197 3j25_A Tetracycline resistance 98.3 2.9E-07 9.9E-12 106.9 4.5 69 152-235 68-136 (638)
198 4fn5_A EF-G 1, elongation fact 98.3 1.4E-06 4.9E-11 102.4 10.4 137 45-234 13-153 (709)
199 2ohf_A Protein OLA1, GTP-bindi 98.3 5.1E-07 1.7E-11 98.0 5.8 41 45-85 22-62 (396)
200 3r7w_B Gtpase2, GTP-binding pr 98.2 4.4E-06 1.5E-10 88.2 11.0 71 151-233 46-121 (331)
201 2dby_A GTP-binding protein; GD 98.2 1.7E-06 5.7E-11 93.5 7.9 40 46-85 2-41 (368)
202 2p67_A LAO/AO transport system 98.2 4.4E-06 1.5E-10 89.5 10.5 25 44-68 55-79 (341)
203 2j37_W Signal recognition part 98.1 2.6E-05 9.1E-10 87.3 15.8 74 152-237 185-259 (504)
204 1f5n_A Interferon-induced guan 98.1 6E-06 2E-10 94.1 9.4 28 43-70 36-63 (592)
205 3c5h_A Glucocorticoid receptor 98.1 8E-07 2.7E-11 91.2 1.5 26 43-68 17-51 (255)
206 1puj_A YLQF, conserved hypothe 98.1 1E-05 3.6E-10 84.2 9.8 29 45-73 120-148 (282)
207 3dm5_A SRP54, signal recogniti 98.1 2.9E-05 1E-09 85.3 13.7 80 152-242 184-263 (443)
208 1tq4_A IIGP1, interferon-induc 98.0 1.7E-05 5.7E-10 86.8 11.2 72 148-231 117-188 (413)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 4.9E-06 1.7E-10 90.4 6.3 41 45-85 20-61 (392)
210 2qm8_A GTPase/ATPase; G protei 98.0 3.7E-05 1.3E-09 82.1 12.1 24 45-68 55-78 (337)
211 1yrb_A ATP(GTP)binding protein 97.9 3.3E-05 1.1E-09 78.9 10.5 28 44-71 13-45 (262)
212 3cnl_A YLQF, putative uncharac 97.7 2.3E-05 7.8E-10 80.7 5.5 25 46-70 100-124 (262)
213 2v3c_C SRP54, signal recogniti 97.7 7E-05 2.4E-09 82.6 8.3 77 151-239 181-259 (432)
214 3kl4_A SRP54, signal recogniti 97.6 0.00011 3.7E-09 80.7 8.9 79 151-238 180-258 (433)
215 2wsm_A Hydrogenase expression/ 97.5 6.7E-05 2.3E-09 74.4 4.6 25 44-68 29-53 (221)
216 2xxa_A Signal recognition part 97.3 0.0025 8.6E-08 70.1 15.6 74 152-237 185-259 (433)
217 2px0_A Flagellar biosynthesis 97.3 0.001 3.5E-08 69.5 11.1 93 151-258 183-277 (296)
218 1j8m_F SRP54, signal recogniti 97.3 0.0016 5.3E-08 68.1 12.4 80 152-241 182-262 (297)
219 1rj9_A FTSY, signal recognitio 97.3 0.00089 3.1E-08 70.2 10.4 100 152-258 186-285 (304)
220 3q5d_A Atlastin-1; G protein, 97.2 0.00087 3E-08 73.8 10.3 24 45-68 67-90 (447)
221 2yhs_A FTSY, cell division pro 97.2 0.0021 7.1E-08 71.4 12.4 81 152-241 377-461 (503)
222 3e70_C DPA, signal recognition 96.9 0.0026 8.9E-08 67.4 10.0 77 152-239 213-289 (328)
223 1vma_A Cell division protein F 96.9 0.00034 1.2E-08 73.4 2.5 96 151-258 187-287 (306)
224 1zu4_A FTSY; GTPase, signal re 96.7 0.055 1.9E-06 56.9 17.6 80 152-241 193-277 (320)
225 2ffh_A Protein (FFH); SRP54, s 96.6 0.0045 1.5E-07 67.7 8.9 77 152-239 182-258 (425)
226 2og2_A Putative signal recogni 95.9 0.038 1.3E-06 59.0 11.6 85 152-241 242-326 (359)
227 1ls1_A Signal recognition part 95.8 0.016 5.6E-07 60.3 7.9 80 151-241 181-260 (295)
228 3b9q_A Chloroplast SRP recepto 95.8 0.064 2.2E-06 55.9 12.3 84 152-240 185-268 (302)
229 4ido_A Atlastin-1; GTPase, GTP 94.3 0.04 1.4E-06 60.4 5.7 21 46-66 68-88 (457)
230 3ney_A 55 kDa erythrocyte memb 94.3 0.018 6.2E-07 56.1 2.6 23 46-68 20-42 (197)
231 4dzz_A Plasmid partitioning pr 94.1 0.16 5.4E-06 49.0 9.2 63 151-231 76-143 (206)
232 1ex7_A Guanylate kinase; subst 94.1 0.02 6.9E-07 55.3 2.5 35 48-82 4-40 (186)
233 1lvg_A Guanylate kinase, GMP k 93.7 0.026 8.8E-07 54.9 2.6 22 47-68 6-27 (198)
234 1kgd_A CASK, peripheral plasma 93.7 0.026 9E-07 53.8 2.6 22 47-68 7-28 (180)
235 2rcn_A Probable GTPase ENGC; Y 93.7 0.041 1.4E-06 58.7 4.3 23 47-69 217-239 (358)
236 2hf9_A Probable hydrogenase ni 93.6 0.032 1.1E-06 54.9 3.0 27 44-70 37-63 (226)
237 1znw_A Guanylate kinase, GMP k 93.5 0.029 9.9E-07 54.8 2.5 22 47-68 22-43 (207)
238 1ye8_A Protein THEP1, hypothet 93.5 0.033 1.1E-06 53.4 2.8 22 47-68 2-23 (178)
239 3tif_A Uncharacterized ABC tra 93.3 0.041 1.4E-06 55.2 3.1 23 47-69 33-55 (235)
240 1u0l_A Probable GTPase ENGC; p 93.2 0.05 1.7E-06 56.7 3.8 24 46-69 170-193 (301)
241 3tau_A Guanylate kinase, GMP k 93.2 0.046 1.6E-06 53.5 3.4 22 47-68 10-31 (208)
242 1s96_A Guanylate kinase, GMP k 93.2 0.036 1.2E-06 55.0 2.5 23 47-69 18-40 (219)
243 4g1u_C Hemin import ATP-bindin 93.1 0.052 1.8E-06 55.5 3.8 23 47-69 39-61 (266)
244 1zp6_A Hypothetical protein AT 93.1 0.045 1.5E-06 52.3 3.1 22 47-68 11-32 (191)
245 3tr0_A Guanylate kinase, GMP k 93.1 0.038 1.3E-06 53.4 2.5 22 47-68 9-30 (205)
246 2pcj_A ABC transporter, lipopr 93.0 0.043 1.5E-06 54.6 2.9 23 47-69 32-54 (224)
247 1t9h_A YLOQ, probable GTPase E 93.0 0.019 6.5E-07 60.0 0.2 24 46-69 174-197 (307)
248 4fid_A G protein alpha subunit 93.0 0.055 1.9E-06 57.3 3.8 69 151-232 161-242 (340)
249 3a00_A Guanylate kinase, GMP k 92.9 0.041 1.4E-06 52.7 2.5 22 47-68 3-24 (186)
250 1sgw_A Putative ABC transporte 92.9 0.051 1.8E-06 53.7 3.2 23 47-69 37-59 (214)
251 1z6g_A Guanylate kinase; struc 92.9 0.042 1.4E-06 54.3 2.5 22 47-68 25-46 (218)
252 1u0l_A Probable GTPase ENGC; p 92.8 0.039 1.3E-06 57.5 2.2 67 152-233 64-130 (301)
253 3c8u_A Fructokinase; YP_612366 92.8 0.038 1.3E-06 54.0 2.0 22 47-68 24-45 (208)
254 2onk_A Molybdate/tungstate ABC 92.7 0.056 1.9E-06 54.4 3.3 24 46-69 25-48 (240)
255 2cbz_A Multidrug resistance-as 92.7 0.057 2E-06 54.2 3.3 23 47-69 33-55 (237)
256 1mv5_A LMRA, multidrug resista 92.6 0.057 1.9E-06 54.4 3.2 23 47-69 30-52 (243)
257 1np6_A Molybdopterin-guanine d 92.6 0.058 2E-06 51.5 3.0 24 45-68 6-29 (174)
258 3gfo_A Cobalt import ATP-bindi 92.6 0.057 2E-06 55.5 3.2 23 47-69 36-58 (275)
259 2pze_A Cystic fibrosis transme 92.6 0.059 2E-06 53.8 3.2 23 47-69 36-58 (229)
260 1b0u_A Histidine permease; ABC 92.6 0.058 2E-06 55.0 3.2 23 47-69 34-56 (262)
261 1g6h_A High-affinity branched- 92.5 0.058 2E-06 54.8 3.1 23 47-69 35-57 (257)
262 2ff7_A Alpha-hemolysin translo 92.4 0.062 2.1E-06 54.3 3.1 23 47-69 37-59 (247)
263 3ohm_A Guanine nucleotide-bind 92.4 0.062 2.1E-06 56.6 3.2 69 151-232 167-248 (327)
264 2gza_A Type IV secretion syste 92.4 0.066 2.3E-06 57.3 3.5 22 47-68 177-198 (361)
265 1htw_A HI0065; nucleotide-bind 92.4 0.055 1.9E-06 50.7 2.5 23 47-69 35-57 (158)
266 2qi9_C Vitamin B12 import ATP- 92.4 0.064 2.2E-06 54.3 3.2 23 47-69 28-50 (249)
267 1ji0_A ABC transporter; ATP bi 92.3 0.065 2.2E-06 53.9 3.1 23 47-69 34-56 (240)
268 2olj_A Amino acid ABC transpor 92.3 0.066 2.3E-06 54.6 3.2 23 47-69 52-74 (263)
269 1vpl_A ABC transporter, ATP-bi 92.3 0.067 2.3E-06 54.4 3.2 23 47-69 43-65 (256)
270 4gp7_A Metallophosphoesterase; 92.3 0.069 2.4E-06 50.5 3.1 21 47-67 11-31 (171)
271 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.06 2E-06 56.9 2.8 22 47-68 173-194 (330)
272 2d2e_A SUFC protein; ABC-ATPas 92.2 0.07 2.4E-06 54.0 3.2 22 47-68 31-52 (250)
273 1zcb_A G alpha I/13; GTP-bindi 92.2 0.054 1.8E-06 58.0 2.4 68 151-231 201-281 (362)
274 2ghi_A Transport protein; mult 92.1 0.07 2.4E-06 54.3 3.1 23 47-69 48-70 (260)
275 2zu0_C Probable ATP-dependent 92.1 0.075 2.6E-06 54.3 3.3 23 47-69 48-70 (267)
276 2ixe_A Antigen peptide transpo 92.1 0.072 2.5E-06 54.6 3.1 23 47-69 47-69 (271)
277 2nq2_C Hypothetical ABC transp 92.0 0.073 2.5E-06 53.9 3.1 23 47-69 33-55 (253)
278 2yz2_A Putative ABC transporte 91.9 0.077 2.6E-06 54.2 3.1 23 47-69 35-57 (266)
279 2ihy_A ABC transporter, ATP-bi 91.9 0.078 2.7E-06 54.6 3.2 23 47-69 49-71 (279)
280 2oap_1 GSPE-2, type II secreti 91.9 0.069 2.3E-06 59.9 3.0 30 48-79 263-292 (511)
281 2eyu_A Twitching motility prot 91.8 0.067 2.3E-06 54.5 2.6 22 47-68 27-48 (261)
282 3asz_A Uridine kinase; cytidin 91.8 0.063 2.2E-06 52.3 2.2 22 47-68 8-29 (211)
283 1cip_A Protein (guanine nucleo 91.5 0.056 1.9E-06 57.7 1.7 68 151-231 193-273 (353)
284 2j41_A Guanylate kinase; GMP, 91.5 0.08 2.7E-06 51.1 2.6 23 47-69 8-30 (207)
285 1kag_A SKI, shikimate kinase I 91.4 0.081 2.8E-06 49.6 2.5 22 47-68 6-27 (173)
286 2v9p_A Replication protein E1; 91.4 0.079 2.7E-06 55.2 2.7 22 47-68 128-149 (305)
287 2pjz_A Hypothetical protein ST 91.3 0.098 3.4E-06 53.3 3.2 25 47-73 32-56 (263)
288 3b85_A Phosphate starvation-in 91.3 0.06 2.1E-06 52.9 1.5 21 48-68 25-45 (208)
289 2f1r_A Molybdopterin-guanine d 91.3 0.045 1.5E-06 52.0 0.6 23 46-68 3-25 (171)
290 2yv5_A YJEQ protein; hydrolase 91.3 0.12 4.3E-06 53.7 4.0 23 46-69 166-188 (302)
291 3kta_A Chromosome segregation 91.2 0.081 2.8E-06 50.2 2.3 23 46-68 27-49 (182)
292 4eun_A Thermoresistant glucoki 91.1 0.091 3.1E-06 50.9 2.5 23 46-68 30-52 (200)
293 2bdt_A BH3686; alpha-beta prot 91.1 0.091 3.1E-06 50.2 2.5 21 47-67 4-24 (189)
294 3nh6_A ATP-binding cassette SU 91.0 0.078 2.7E-06 55.3 2.1 23 47-69 82-104 (306)
295 2bbw_A Adenylate kinase 4, AK4 91.0 0.12 4.1E-06 51.8 3.4 25 46-70 28-55 (246)
296 2bbs_A Cystic fibrosis transme 90.8 0.11 3.6E-06 53.9 2.9 23 47-69 66-88 (290)
297 1puj_A YLQF, conserved hypothe 90.7 0.26 9E-06 50.7 5.7 54 176-233 12-65 (282)
298 3aez_A Pantothenate kinase; tr 90.6 0.1 3.5E-06 54.6 2.5 22 47-68 92-113 (312)
299 2qor_A Guanylate kinase; phosp 90.6 0.13 4.4E-06 49.9 3.1 23 46-68 13-35 (204)
300 3lnc_A Guanylate kinase, GMP k 90.5 0.087 3E-06 52.2 1.8 22 47-68 29-51 (231)
301 3lw7_A Adenylate kinase relate 90.5 0.15 5.1E-06 47.4 3.3 20 46-65 2-21 (179)
302 3jvv_A Twitching mobility prot 90.4 0.1 3.6E-06 55.6 2.5 22 47-68 125-146 (356)
303 2i3b_A HCR-ntpase, human cance 90.4 0.12 4E-06 50.0 2.6 22 47-68 3-24 (189)
304 1knq_A Gluconate kinase; ALFA/ 90.3 0.12 4.1E-06 48.6 2.5 21 47-67 10-30 (175)
305 3tui_C Methionine import ATP-b 90.2 0.14 4.9E-06 54.6 3.3 23 47-69 56-78 (366)
306 4a74_A DNA repair and recombin 90.2 0.15 5.1E-06 50.0 3.2 29 47-75 27-55 (231)
307 1f2t_A RAD50 ABC-ATPase; DNA d 89.9 0.15 5.3E-06 47.0 2.9 21 46-66 24-44 (149)
308 1z47_A CYSA, putative ABC-tran 89.9 0.15 5.2E-06 54.3 3.2 23 47-69 43-65 (355)
309 2yv5_A YJEQ protein; hydrolase 89.8 0.09 3.1E-06 54.7 1.3 54 180-234 72-126 (302)
310 3fvq_A Fe(3+) IONS import ATP- 89.8 0.15 5E-06 54.4 2.9 23 47-69 32-54 (359)
311 2it1_A 362AA long hypothetical 89.7 0.17 5.7E-06 54.1 3.3 23 47-69 31-53 (362)
312 3kb2_A SPBC2 prophage-derived 89.7 0.19 6.4E-06 46.8 3.3 22 46-67 2-23 (173)
313 1odf_A YGR205W, hypothetical 3 89.6 0.22 7.7E-06 51.4 4.2 23 46-68 32-54 (290)
314 2yyz_A Sugar ABC transporter, 89.6 0.17 5.7E-06 54.1 3.2 23 47-69 31-53 (359)
315 3uie_A Adenylyl-sulfate kinase 89.6 0.14 4.9E-06 49.5 2.5 22 47-68 27-48 (200)
316 3rlf_A Maltose/maltodextrin im 89.6 0.17 5.8E-06 54.4 3.3 23 47-69 31-53 (381)
317 1xjc_A MOBB protein homolog; s 89.5 0.22 7.4E-06 47.2 3.6 24 45-68 4-27 (169)
318 1cke_A CK, MSSA, protein (cyti 89.5 0.16 5.6E-06 49.8 2.9 23 46-68 6-28 (227)
319 2jeo_A Uridine-cytidine kinase 89.4 0.15 5E-06 51.2 2.5 22 47-68 27-48 (245)
320 1g29_1 MALK, maltose transport 89.4 0.17 5.9E-06 54.2 3.2 23 47-69 31-53 (372)
321 3ec2_A DNA replication protein 89.4 0.22 7.4E-06 47.1 3.6 23 46-68 39-61 (180)
322 1lw7_A Transcriptional regulat 89.3 0.13 4.5E-06 54.9 2.2 24 46-69 171-194 (365)
323 1v43_A Sugar-binding transport 89.3 0.19 6.3E-06 54.0 3.3 23 47-69 39-61 (372)
324 1p9r_A General secretion pathw 89.1 0.15 5.2E-06 55.5 2.5 22 47-68 169-190 (418)
325 2ewv_A Twitching motility prot 88.9 0.16 5.4E-06 54.5 2.5 22 47-68 138-159 (372)
326 1jjv_A Dephospho-COA kinase; P 88.8 0.22 7.4E-06 48.2 3.2 21 47-67 4-24 (206)
327 2if2_A Dephospho-COA kinase; a 88.8 0.18 6E-06 48.7 2.5 21 47-67 3-23 (204)
328 1ly1_A Polynucleotide kinase; 88.7 0.23 7.7E-06 46.6 3.1 21 47-67 4-24 (181)
329 3t61_A Gluconokinase; PSI-biol 88.7 0.18 6.2E-06 48.6 2.5 22 46-67 19-40 (202)
330 2qt1_A Nicotinamide riboside k 88.5 0.22 7.7E-06 48.2 3.1 31 38-68 13-44 (207)
331 3d31_A Sulfate/molybdate ABC t 88.5 0.16 5.3E-06 54.1 2.0 23 47-69 28-50 (348)
332 1sq5_A Pantothenate kinase; P- 88.5 0.17 5.9E-06 52.7 2.3 22 47-68 82-103 (308)
333 1ixz_A ATP-dependent metallopr 88.5 0.38 1.3E-05 48.2 4.8 21 48-68 52-72 (254)
334 4e22_A Cytidylate kinase; P-lo 88.4 0.28 9.5E-06 49.5 3.7 25 46-70 28-55 (252)
335 2jaq_A Deoxyguanosine kinase; 88.2 0.27 9.3E-06 47.1 3.4 21 47-67 2-22 (205)
336 1azs_C GS-alpha; complex (lyas 88.2 0.22 7.6E-06 53.9 3.0 68 151-231 217-297 (402)
337 3gd7_A Fusion complex of cysti 88.1 0.22 7.7E-06 53.7 2.9 23 47-69 49-71 (390)
338 1rz3_A Hypothetical protein rb 88.1 0.2 6.7E-06 48.6 2.3 22 47-68 24-45 (201)
339 1qhx_A CPT, protein (chloramph 88.0 0.26 8.9E-06 46.2 3.1 21 47-67 5-25 (178)
340 2ehv_A Hypothetical protein PH 87.9 0.26 8.9E-06 48.9 3.1 21 47-67 32-52 (251)
341 1nij_A Hypothetical protein YJ 87.9 0.14 4.8E-06 53.7 1.1 25 45-69 4-28 (318)
342 2npi_A Protein CLP1; CLP1-PCF1 87.8 0.19 6.6E-06 55.5 2.3 26 44-69 137-162 (460)
343 2vp4_A Deoxynucleoside kinase; 87.8 0.19 6.6E-06 49.8 2.1 22 47-68 22-43 (230)
344 2kjq_A DNAA-related protein; s 87.8 0.15 5.3E-06 47.0 1.2 25 45-69 36-60 (149)
345 3qf7_A RAD50; ABC-ATPase, ATPa 87.7 0.26 9E-06 52.7 3.2 23 44-66 22-44 (365)
346 2xtz_A Guanine nucleotide-bind 87.6 0.16 5.6E-06 54.0 1.5 69 151-232 183-264 (354)
347 1oxx_K GLCV, glucose, ABC tran 87.6 0.15 5.3E-06 54.2 1.2 23 47-69 33-55 (353)
348 1kht_A Adenylate kinase; phosp 87.4 0.3 1E-05 46.2 3.1 21 47-67 5-25 (192)
349 1nks_A Adenylate kinase; therm 87.3 0.28 9.5E-06 46.5 2.8 21 47-67 3-23 (194)
350 3vaa_A Shikimate kinase, SK; s 87.1 0.35 1.2E-05 46.6 3.4 22 46-67 26-47 (199)
351 1y63_A LMAJ004144AAA protein; 87.0 0.42 1.4E-05 45.4 3.9 24 45-68 10-33 (184)
352 3tqc_A Pantothenate kinase; bi 86.9 0.26 9E-06 51.7 2.6 22 47-68 94-115 (321)
353 3trf_A Shikimate kinase, SK; a 86.9 0.37 1.3E-05 45.5 3.4 22 45-66 5-26 (185)
354 1via_A Shikimate kinase; struc 86.5 0.37 1.3E-05 45.2 3.2 22 46-67 5-26 (175)
355 2iyv_A Shikimate kinase, SK; t 86.5 0.35 1.2E-05 45.7 3.0 21 46-66 3-23 (184)
356 3cm0_A Adenylate kinase; ATP-b 86.4 0.37 1.3E-05 45.6 3.1 20 47-66 6-25 (186)
357 1yqt_A RNAse L inhibitor; ATP- 86.4 0.36 1.2E-05 54.5 3.5 23 47-69 49-71 (538)
358 2rhm_A Putative kinase; P-loop 86.4 0.33 1.1E-05 46.0 2.8 20 47-66 7-26 (193)
359 3thx_A DNA mismatch repair pro 86.2 3.2 0.00011 49.7 11.7 19 47-65 664-682 (934)
360 2v54_A DTMP kinase, thymidylat 86.1 0.38 1.3E-05 46.1 3.1 22 47-68 6-27 (204)
361 2plr_A DTMP kinase, probable t 86.0 0.39 1.3E-05 46.2 3.1 21 47-67 6-26 (213)
362 3ozx_A RNAse L inhibitor; ATP 85.9 0.36 1.2E-05 54.4 3.2 23 47-69 27-49 (538)
363 3ozx_A RNAse L inhibitor; ATP 85.8 0.44 1.5E-05 53.7 3.9 23 47-69 296-318 (538)
364 1yqt_A RNAse L inhibitor; ATP- 85.8 0.51 1.7E-05 53.2 4.4 23 47-69 314-336 (538)
365 3fb4_A Adenylate kinase; psych 85.8 0.42 1.4E-05 46.4 3.3 20 47-66 2-21 (216)
366 3qks_A DNA double-strand break 85.8 0.42 1.4E-05 46.5 3.2 21 46-66 24-44 (203)
367 2pez_A Bifunctional 3'-phospho 85.6 0.36 1.2E-05 45.5 2.6 22 47-68 7-28 (179)
368 3iij_A Coilin-interacting nucl 85.6 0.42 1.5E-05 45.0 3.1 22 45-66 11-32 (180)
369 1iy2_A ATP-dependent metallopr 85.4 0.65 2.2E-05 47.2 4.6 21 48-68 76-96 (278)
370 3euj_A Chromosome partition pr 85.4 0.34 1.2E-05 53.7 2.6 23 47-69 31-53 (483)
371 2z0h_A DTMP kinase, thymidylat 85.3 0.44 1.5E-05 45.3 3.1 21 47-67 2-22 (197)
372 3bk7_A ABC transporter ATP-bin 85.3 0.53 1.8E-05 53.8 4.2 23 47-69 384-406 (607)
373 3dl0_A Adenylate kinase; phosp 85.2 0.47 1.6E-05 46.1 3.3 20 47-66 2-21 (216)
374 2c95_A Adenylate kinase 1; tra 85.1 0.47 1.6E-05 45.1 3.2 21 46-66 10-30 (196)
375 3j16_B RLI1P; ribosome recycli 85.1 0.42 1.4E-05 54.6 3.3 23 47-69 105-127 (608)
376 2x8a_A Nuclear valosin-contain 85.0 0.37 1.3E-05 49.3 2.5 21 48-68 47-67 (274)
377 2w0m_A SSO2452; RECA, SSPF, un 85.0 0.38 1.3E-05 47.0 2.5 22 47-68 25-46 (235)
378 3b5x_A Lipid A export ATP-bind 85.0 0.41 1.4E-05 54.5 3.1 23 47-69 371-393 (582)
379 1e6c_A Shikimate kinase; phosp 85.0 0.49 1.7E-05 44.0 3.1 21 46-66 3-23 (173)
380 3b60_A Lipid A export ATP-bind 84.9 0.42 1.4E-05 54.4 3.1 23 47-69 371-393 (582)
381 2yvu_A Probable adenylyl-sulfa 84.8 0.5 1.7E-05 44.8 3.1 23 46-68 14-36 (186)
382 3bk7_A ABC transporter ATP-bin 84.8 0.44 1.5E-05 54.5 3.2 23 47-69 119-141 (607)
383 2pbr_A DTMP kinase, thymidylat 84.7 0.47 1.6E-05 44.9 3.0 21 47-67 2-22 (195)
384 1tev_A UMP-CMP kinase; ploop, 84.6 0.5 1.7E-05 44.7 3.1 20 47-66 5-24 (196)
385 2wwf_A Thymidilate kinase, put 84.6 0.44 1.5E-05 46.0 2.7 22 46-67 11-32 (212)
386 1gtv_A TMK, thymidylate kinase 84.6 0.22 7.5E-06 48.3 0.5 22 47-68 2-23 (214)
387 2pt5_A Shikimate kinase, SK; a 84.4 0.55 1.9E-05 43.5 3.2 20 47-66 2-21 (168)
388 3h2y_A GTPase family protein; 84.4 0.55 1.9E-05 50.2 3.6 56 175-234 57-112 (368)
389 1nn5_A Similar to deoxythymidy 84.3 0.46 1.6E-05 45.9 2.7 21 47-67 11-31 (215)
390 2cdn_A Adenylate kinase; phosp 84.3 0.68 2.3E-05 44.4 3.9 21 47-67 22-42 (201)
391 1cr0_A DNA primase/helicase; R 84.0 0.4 1.4E-05 49.3 2.2 23 47-69 37-59 (296)
392 4a82_A Cystic fibrosis transme 83.9 0.38 1.3E-05 54.8 2.2 23 47-69 369-391 (578)
393 2bwj_A Adenylate kinase 5; pho 83.9 0.57 1.9E-05 44.6 3.2 22 46-67 13-34 (199)
394 1gvn_B Zeta; postsegregational 83.8 1.1 3.8E-05 46.0 5.5 21 47-67 35-55 (287)
395 1lv7_A FTSH; alpha/beta domain 83.8 0.74 2.5E-05 46.1 4.1 22 47-68 47-68 (257)
396 3qf4_B Uncharacterized ABC tra 83.6 0.41 1.4E-05 54.7 2.4 23 47-69 383-405 (598)
397 3qf4_A ABC transporter, ATP-bi 83.6 0.43 1.5E-05 54.5 2.4 23 47-69 371-393 (587)
398 1vht_A Dephospho-COA kinase; s 83.6 0.56 1.9E-05 45.7 3.0 21 47-67 6-26 (218)
399 3qkt_A DNA double-strand break 83.5 0.52 1.8E-05 49.7 2.9 21 46-66 24-44 (339)
400 2yl4_A ATP-binding cassette SU 83.5 0.4 1.4E-05 54.8 2.2 23 47-69 372-394 (595)
401 3l82_B F-box only protein 4; T 83.4 2.7 9.1E-05 41.2 7.6 96 153-257 98-202 (227)
402 1zd8_A GTP:AMP phosphotransfer 83.2 0.62 2.1E-05 45.8 3.2 21 46-66 8-28 (227)
403 1qf9_A UMP/CMP kinase, protein 83.0 0.58 2E-05 44.2 2.8 20 47-66 8-27 (194)
404 3a4m_A L-seryl-tRNA(SEC) kinas 83.0 0.6 2E-05 47.2 3.0 22 46-67 5-26 (260)
405 3ec1_A YQEH GTPase; atnos1, at 82.9 0.71 2.4E-05 49.4 3.7 55 176-234 60-114 (369)
406 3nwj_A ATSK2; P loop, shikimat 82.9 0.53 1.8E-05 47.5 2.5 23 45-67 48-70 (250)
407 1uf9_A TT1252 protein; P-loop, 82.7 0.6 2.1E-05 44.6 2.8 23 46-68 9-31 (203)
408 1e4v_A Adenylate kinase; trans 82.7 0.64 2.2E-05 45.2 3.0 21 47-67 2-22 (214)
409 1fnn_A CDC6P, cell division co 82.5 1.8 6E-05 45.8 6.7 24 45-68 44-67 (389)
410 1ukz_A Uridylate kinase; trans 82.5 0.68 2.3E-05 44.4 3.1 22 46-67 16-37 (203)
411 1qhl_A Protein (cell division 82.5 0.12 4.1E-06 51.4 -2.4 22 48-69 30-51 (227)
412 3ake_A Cytidylate kinase; CMP 82.4 0.75 2.6E-05 44.1 3.3 22 46-67 3-24 (208)
413 1aky_A Adenylate kinase; ATP:A 82.3 0.77 2.6E-05 44.8 3.5 22 46-67 5-26 (220)
414 1zak_A Adenylate kinase; ATP:A 82.2 0.64 2.2E-05 45.5 2.8 21 46-66 6-26 (222)
415 3j16_B RLI1P; ribosome recycli 82.1 0.67 2.3E-05 53.0 3.3 25 48-73 381-405 (608)
416 1svm_A Large T antigen; AAA+ f 82.1 0.56 1.9E-05 50.3 2.5 22 47-68 171-192 (377)
417 2vli_A Antibiotic resistance p 82.0 0.48 1.6E-05 44.5 1.8 21 46-66 6-26 (183)
418 2ze6_A Isopentenyl transferase 82.0 0.71 2.4E-05 46.4 3.1 21 47-67 3-23 (253)
419 2o5v_A DNA replication and rep 82.0 0.58 2E-05 49.8 2.6 23 46-68 27-49 (359)
420 2obl_A ESCN; ATPase, hydrolase 81.7 0.59 2E-05 49.5 2.5 23 47-69 73-95 (347)
421 1m7g_A Adenylylsulfate kinase; 81.5 0.64 2.2E-05 45.1 2.5 22 47-68 27-48 (211)
422 1in4_A RUVB, holliday junction 81.5 0.68 2.3E-05 48.6 2.9 23 46-68 52-74 (334)
423 2cvh_A DNA repair and recombin 81.5 0.64 2.2E-05 45.0 2.5 21 47-67 22-42 (220)
424 2p5t_B PEZT; postsegregational 81.3 1.2 4.2E-05 44.6 4.6 22 47-68 34-55 (253)
425 1zuh_A Shikimate kinase; alpha 81.3 0.82 2.8E-05 42.4 3.1 22 45-66 7-28 (168)
426 1n0w_A DNA repair protein RAD5 81.3 0.66 2.3E-05 45.7 2.6 26 47-72 26-51 (243)
427 1jbk_A CLPB protein; beta barr 81.2 0.83 2.8E-05 42.5 3.1 23 46-68 44-66 (195)
428 1w1w_A Structural maintenance 81.1 0.63 2.1E-05 50.8 2.5 23 47-69 28-50 (430)
429 2xb4_A Adenylate kinase; ATP-b 81.1 0.81 2.8E-05 44.9 3.1 20 47-66 2-21 (223)
430 1t9h_A YLOQ, probable GTPase E 81.0 1.4 4.8E-05 45.8 5.0 51 183-234 82-133 (307)
431 3auy_A DNA double-strand break 81.0 0.72 2.5E-05 49.3 2.9 21 46-66 26-46 (371)
432 1e69_A Chromosome segregation 80.7 0.57 2E-05 49.0 1.9 23 46-68 25-47 (322)
433 2dpy_A FLII, flagellum-specifi 80.6 0.67 2.3E-05 50.8 2.5 23 47-69 159-181 (438)
434 4aby_A DNA repair protein RECN 80.5 0.25 8.6E-06 53.5 -1.0 23 46-68 61-83 (415)
435 2grj_A Dephospho-COA kinase; T 80.3 0.89 3E-05 43.8 3.0 25 43-67 10-34 (192)
436 3tlx_A Adenylate kinase 2; str 80.1 0.97 3.3E-05 45.1 3.3 21 46-66 30-50 (243)
437 3thx_B DNA mismatch repair pro 79.7 8 0.00027 46.2 11.5 22 47-68 675-696 (918)
438 4eaq_A DTMP kinase, thymidylat 79.7 0.97 3.3E-05 44.8 3.1 22 47-68 28-49 (229)
439 1wb9_A DNA mismatch repair pro 79.6 7.8 0.00027 45.6 11.3 23 47-69 609-631 (800)
440 2ga8_A Hypothetical 39.9 kDa p 79.5 1.6 5.5E-05 46.2 4.9 25 44-68 23-47 (359)
441 4b4t_L 26S protease subunit RP 79.4 11 0.00039 40.8 11.8 26 43-68 212-238 (437)
442 3be4_A Adenylate kinase; malar 79.2 1 3.6E-05 43.8 3.2 21 46-66 6-26 (217)
443 1ak2_A Adenylate kinase isoenz 79.2 1.1 3.9E-05 44.1 3.5 22 46-67 17-38 (233)
444 3syl_A Protein CBBX; photosynt 79.1 2.4 8.3E-05 43.3 6.1 30 38-67 60-89 (309)
445 3exa_A TRNA delta(2)-isopenten 78.9 1.2 4.2E-05 46.3 3.7 22 46-67 4-25 (322)
446 2iw3_A Elongation factor 3A; a 78.8 0.65 2.2E-05 55.8 1.7 23 47-69 701-723 (986)
447 2qen_A Walker-type ATPase; unk 78.2 3.1 0.00011 43.0 6.7 23 46-68 32-54 (350)
448 1sxj_E Activator 1 40 kDa subu 78.1 0.87 3E-05 47.8 2.4 25 44-68 35-59 (354)
449 1uj2_A Uridine-cytidine kinase 77.8 1.1 3.9E-05 44.7 3.0 22 46-67 23-44 (252)
450 1nlf_A Regulatory protein REPA 77.6 0.9 3.1E-05 46.2 2.2 21 47-67 32-52 (279)
451 4f4c_A Multidrug resistance pr 77.5 1 3.5E-05 56.4 3.0 23 47-69 446-468 (1321)
452 1ltq_A Polynucleotide kinase; 77.4 1.2 4.1E-05 45.6 3.1 21 47-67 4-24 (301)
453 3r20_A Cytidylate kinase; stru 77.2 1.4 4.7E-05 43.9 3.4 20 47-66 11-30 (233)
454 2f6r_A COA synthase, bifunctio 77.2 1.1 3.8E-05 45.8 2.7 20 47-66 77-96 (281)
455 1q3t_A Cytidylate kinase; nucl 77.1 1.3 4.4E-05 43.8 3.1 23 45-67 16-38 (236)
456 4f4c_A Multidrug resistance pr 77.1 0.73 2.5E-05 57.7 1.6 52 174-227 1222-1274(1321)
457 3cnl_A YLQF, putative uncharac 77.1 0.9 3.1E-05 46.0 2.0 49 179-233 13-61 (262)
458 2dhr_A FTSH; AAA+ protein, hex 76.9 2.7 9.1E-05 46.8 5.9 22 47-68 66-87 (499)
459 3a8t_A Adenylate isopentenyltr 76.5 2 6.8E-05 45.2 4.5 23 46-68 41-63 (339)
460 3bos_A Putative DNA replicatio 76.4 1.5 5.1E-05 42.7 3.4 24 45-68 52-75 (242)
461 2chg_A Replication factor C sm 76.0 1.6 5.5E-05 41.6 3.4 22 46-67 39-60 (226)
462 3foz_A TRNA delta(2)-isopenten 75.8 1.4 4.8E-05 45.7 3.1 22 46-67 11-32 (316)
463 3n70_A Transport activator; si 75.6 2.9 9.8E-05 37.8 4.9 21 48-68 27-47 (145)
464 2ius_A DNA translocase FTSK; n 75.6 1.4 4.7E-05 49.1 3.1 23 45-67 167-189 (512)
465 3g5u_A MCG1178, multidrug resi 75.6 1.2 4.2E-05 55.5 3.0 23 47-69 418-440 (1284)
466 3sr0_A Adenylate kinase; phosp 75.5 1.6 5.5E-05 42.4 3.3 21 47-67 2-22 (206)
467 2p65_A Hypothetical protein PF 75.1 1.3 4.6E-05 41.0 2.5 23 46-68 44-66 (187)
468 2w58_A DNAI, primosome compone 75.1 1.6 5.4E-05 41.7 3.1 23 46-68 55-77 (202)
469 2iw3_A Elongation factor 3A; a 75.0 1.2 4.2E-05 53.4 2.7 22 47-68 463-484 (986)
470 1sxj_C Activator 1 40 kDa subu 75.0 1.4 4.7E-05 46.2 2.8 25 44-68 45-69 (340)
471 3cr8_A Sulfate adenylyltranfer 74.6 0.81 2.8E-05 51.6 0.9 22 47-68 371-392 (552)
472 2qby_A CDC6 homolog 1, cell di 74.2 0.98 3.3E-05 47.6 1.5 23 46-68 46-68 (386)
473 2ce7_A Cell division protein F 74.0 2.2 7.6E-05 47.1 4.3 22 47-68 51-72 (476)
474 3ux8_A Excinuclease ABC, A sub 73.2 1.2 4.1E-05 51.6 1.9 20 47-66 350-369 (670)
475 3umf_A Adenylate kinase; rossm 73.0 1.9 6.7E-05 42.3 3.2 26 42-67 25-51 (217)
476 3zvl_A Bifunctional polynucleo 72.7 1.8 6.1E-05 47.0 3.1 22 46-67 259-280 (416)
477 1p5z_B DCK, deoxycytidine kina 72.3 1.4 4.7E-05 44.4 2.0 24 45-68 24-47 (263)
478 2r62_A Cell division protease 72.3 3.5 0.00012 41.2 5.0 20 48-67 47-66 (268)
479 2ocp_A DGK, deoxyguanosine kin 72.2 1.8 6.3E-05 42.7 2.9 22 47-68 4-25 (241)
480 1njg_A DNA polymerase III subu 72.2 2 6.8E-05 41.5 3.1 21 47-67 47-67 (250)
481 2qmh_A HPR kinase/phosphorylas 72.1 2 6.9E-05 41.6 2.9 24 45-68 34-57 (205)
482 1tue_A Replication protein E1; 71.8 1.9 6.5E-05 42.0 2.7 21 47-67 60-80 (212)
483 1c9k_A COBU, adenosylcobinamid 71.1 2.1 7.3E-05 40.7 2.9 21 48-68 2-22 (180)
484 3d3q_A TRNA delta(2)-isopenten 71.0 2.1 7.3E-05 45.0 3.1 22 47-68 9-30 (340)
485 3g5u_A MCG1178, multidrug resi 71.0 2 6.8E-05 53.6 3.3 23 47-69 1061-1083(1284)
486 1pzn_A RAD51, DNA repair and r 70.9 1.6 5.6E-05 46.1 2.2 23 47-69 133-155 (349)
487 1d2n_A N-ethylmaleimide-sensit 70.6 6 0.0002 39.7 6.3 23 45-67 64-86 (272)
488 2dr3_A UPF0273 protein PH0284; 70.4 2.1 7.3E-05 41.9 2.9 21 47-67 25-45 (247)
489 2rcn_A Probable GTPase ENGC; Y 70.3 1.5 5.3E-05 46.5 1.8 49 185-234 128-176 (358)
490 3t15_A Ribulose bisphosphate c 70.0 2.5 8.6E-05 43.3 3.4 26 42-67 32-58 (293)
491 1a7j_A Phosphoribulokinase; tr 69.9 1.3 4.3E-05 45.7 1.0 22 46-67 6-27 (290)
492 1ko7_A HPR kinase/phosphatase; 69.3 1.5 5E-05 45.7 1.4 25 45-69 144-168 (314)
493 2h92_A Cytidylate kinase; ross 69.1 2.6 8.7E-05 40.8 3.1 21 47-67 5-25 (219)
494 3b9p_A CG5977-PA, isoform A; A 68.9 2.1 7.1E-05 43.6 2.5 23 46-68 55-77 (297)
495 1bif_A 6-phosphofructo-2-kinas 68.9 2.4 8.3E-05 46.6 3.1 21 47-67 41-61 (469)
496 3co5_A Putative two-component 68.9 2.6 8.7E-05 38.1 2.8 21 48-68 30-50 (143)
497 4edh_A DTMP kinase, thymidylat 68.8 2.7 9.1E-05 41.1 3.1 21 47-67 8-28 (213)
498 4ag6_A VIRB4 ATPase, type IV s 68.5 2.6 8.9E-05 45.1 3.2 26 44-69 34-59 (392)
499 3crm_A TRNA delta(2)-isopenten 68.3 2.7 9.1E-05 43.9 3.1 21 47-67 7-27 (323)
500 2iut_A DNA translocase FTSK; n 68.1 2.6 9E-05 47.4 3.2 23 45-67 214-236 (574)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=2.1e-109 Score=962.96 Aligned_cols=695 Identities=39% Similarity=0.647 Sum_probs=577.6
Q ss_pred cchhhhhhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCC
Q 045702 13 AASTTIGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPR 92 (728)
Q Consensus 13 ~~~~~~~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~ 92 (728)
+.....|++|++++|+|+|.++.+ |.+..+++|+|+|||.+|+|||||||+|+|.+|||++.++|||||+++++.+.+
T Consensus 20 ~~~~~~~~~li~~inkl~d~l~~l-g~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~- 97 (772)
T 3zvr_A 20 HMGNRGMEDLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST- 97 (772)
T ss_dssp -----CGGGHHHHHHHHHHHHHTT-TCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS-
T ss_pred ccccccHHHHHHHHHHHHHHHHhc-CccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC-
Confidence 344555899999999999999999 998899999999999999999999999999999999999999999999999876
Q ss_pred CCCCCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchh
Q 045702 93 NPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTD 172 (728)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~ 172 (728)
.+|+.+.+.++..+.+++++...++..++...|.+.+|+.+++.++|++|++++++||||||+.+.+.+++|.+
T Consensus 98 ------~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~d 171 (772)
T 3zvr_A 98 ------TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD 171 (772)
T ss_dssp ------SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCH
T ss_pred ------cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHH
Confidence 36888888889999999999999999999999999999999999999999999999999999999888889988
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCce
Q 045702 173 IEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGY 252 (728)
Q Consensus 173 ~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~ 252 (728)
+...+.+++..|+.....+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.++..++++||
T Consensus 172 i~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~ 251 (772)
T 3zvr_A 172 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGY 251 (772)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccC
Confidence 88899999999999777799999999999999997799999999999999999999999888776677777778888999
Q ss_pred eEeecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 045702 253 VGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKEL 332 (728)
Q Consensus 253 ~~v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL 332 (728)
+.|.++|+.+......+.+++..|..||..+|+|..+.++.|+..|++.|++.|..||+++||.|+.+|+.++.+++.++
T Consensus 252 ~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vel 331 (772)
T 3zvr_A 252 IGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEV 331 (772)
T ss_dssp EECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHH
Confidence 99999999988777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChH-HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhhhhcCCCCCCCHHHHHHH
Q 045702 333 QKYGDVMESKA-EKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTA 411 (728)
Q Consensus 333 ~~lg~~~~~~~-~~~~~l~~~~~~f~~~~~~~l~G~~~~~~~~~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~ 411 (728)
+++|+++++++ ++..+|++++++|++.|.++++|.+++..+.++.||+||+++|++.|+..+..+++.+.++++||+++
T Consensus 332 e~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~ 411 (772)
T 3zvr_A 332 DEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYA 411 (772)
T ss_dssp HHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHH
Confidence 99998776554 66778999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHhHHH
Q 045702 412 IQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRP 491 (728)
Q Consensus 412 i~~~~G~~~~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~ 491 (728)
|+|++|.++++|+|+.+|+.||++||++|++||++|++.|+++|.+++++| ..+|.|||+|++++.+++.+.|++++.+
T Consensus 412 i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~-~~~l~RfP~Lr~ei~~iv~~~Lre~~~~ 490 (772)
T 3zvr_A 412 IKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKC-SEKLQQYPRLREEMERIVTTHIREREGR 490 (772)
T ss_dssp HHHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-GGGGTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcccCCCccccchhHHHHHHHHHhhhcc---C--------CCC------C----CC----------C
Q 045702 492 AERMIDSLIEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQ---D--------GTD------G----EK----------G 540 (728)
Q Consensus 492 a~~~i~~li~~E~~~inT~hpdF~~~~~~~~~~~~~~~~~~---~--------~~~------~----~~----------~ 540 (728)
|+++|.+||+||++|||||||||+++.+++..+.+..+... + +|. . .+ .
T Consensus 491 t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (772)
T 3zvr_A 491 TKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENL 570 (772)
T ss_dssp HHHHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEE
T ss_pred HHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeecccccc
Confidence 99999999999999999999999999988866555433210 1 110 0 00 1
Q ss_pred Cc----ccccccccCCCCCCCCcccccccccCCCCCCCCCCCcccccCCCCCC--CCCCCCCCCCcccccccccccc-cc
Q 045702 541 TL----SEIGQRFGLTSQGRHSQSNNQRAASVGGNSSSRTWGFPIIFGGKVQA--GESPASRSPHETLHNVEQLPST-IQ 613 (728)
Q Consensus 541 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 613 (728)
+| .++.++|.++..+...++.. + +.++..+.+.+|+...++ .+..+....|.....+++|.+. .+
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 642 (772)
T 3zvr_A 571 SWYKDDEEKEKKYMLSVDNLKLRDVE-K-------GFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 642 (772)
T ss_dssp EEESSTTCCCEEEEEECTTEEEEEC---------------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccchhhhcccccccccccccchhh-h-------ccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhh
Confidence 11 25555666665443322211 1 112223445677765432 2444555567777778888765 34
Q ss_pred CCCCCCCC---------------CCCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045702 614 LTEPPSIL---------------GPLEM-TEQEAVEILVTKLLLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFI 677 (728)
Q Consensus 614 ~~~~p~~~---------------~~~~~-s~~e~~e~~~I~~li~sYf~Ivrk~i~D~VPKaIm~fLVn~~~~~Lq~~Lv 677 (728)
.+.+|+.. ..... ++++.+++++|++||+|||+||+|++.|+|||+|||||||++++.||++|+
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~ 722 (772)
T 3zvr_A 643 AGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELL 722 (772)
T ss_dssp TTCCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHH
T ss_pred cccCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555432 11122 678889999999999999999999999999999999999999999999999
Q ss_pred HHHhchhhHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045702 678 QKLYRENHVEELLQEHDEVAANRRQVKEVSLVLQQAVQTLDEVESEY 724 (728)
Q Consensus 678 ~~Ly~~~~~~~LL~E~~~i~~kR~~l~~~l~~L~~A~~~L~~v~~~~ 724 (728)
++||+.+.+++||+|++++++||++|.+|+++|++|+++|++|+..+
T Consensus 723 ~~ly~~~~~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~~ 769 (772)
T 3zvr_A 723 ANLYSCGDQNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTTT 769 (772)
T ss_dssp HHHHHTCCTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhcccCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999998754
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.1e-88 Score=787.52 Aligned_cols=579 Identities=31% Similarity=0.461 Sum_probs=486.7
Q ss_pred hhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCcc
Q 045702 20 SSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGR 99 (728)
Q Consensus 20 ~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~ 99 (728)
++..++++ +.|.++.+ |++..+++|+|+|||++|||||||+++|+|.. .|++.|.||+++..+.+.+.... .
T Consensus 22 ~~~r~ll~-~id~l~~~-gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i~~~~~~~~-----~ 93 (608)
T 3szr_A 22 EKVRPCID-LIDSLRAL-GVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNE-----D 93 (608)
T ss_dssp HHHHHHHH-HHHHHHHH-SCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSS-----S
T ss_pred HHHHHHHH-HHHHHHhC-CCCCcccCCeEEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEEEEecCCcc-----c
Confidence 34444443 34455667 99889999999999999999999999999994 69999999999999887765432 1
Q ss_pred chhhhccC--CCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHH
Q 045702 100 EWAEFRHL--PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARI 177 (728)
Q Consensus 100 ~~~~~~~~--~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~ 177 (728)
.|...+.. ....+.++..+.+.+........+.+.+++.+.+.+.+.+|..|+|+|+|+||+...+.++++.+....+
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 33332221 1223567778888888777777788889999999999999999999999999999988888888888899
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccH--HHhHcCCCcccCCceeEe
Q 045702 178 RKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNA--CNFLLGKVVPLRLGYVGV 255 (728)
Q Consensus 178 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v 255 (728)
.+++..|+.++.+++|++++++.|+++++++++++++++.|.+||+|+||+|+++.++.. .+++.|+.+++++||++|
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v 253 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIV 253 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECC
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999988753 388899999999999999
Q ss_pred ecCChhhhhccccHHHHHHHHHHhhccCCCCCcccc--ccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 045702 256 VNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSD--RCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQ 333 (728)
Q Consensus 256 ~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~--~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~ 333 (728)
+||+++|+..+.++.++++.|..||.+||+|+.+.+ ++|+++|+++|+++|.+||+++||.|+.+|+.++.+++.||+
T Consensus 254 ~nr~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~ 333 (608)
T 3szr_A 254 KCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQ 333 (608)
T ss_dssp CCSCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764 799999999999999999999999999999999999999999
Q ss_pred HhCCCCCC-hHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHH
Q 045702 334 KYGDVMES-KAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAI 412 (728)
Q Consensus 334 ~lg~~~~~-~~~~~~~l~~~~~~f~~~~~~~l~G~~~~~~~~~~~g~~ri~~~f~~~f~~~~~~~~~~~~~~~~~i~~~i 412 (728)
+||+++++ ..+++.||++++++|++.++++++|.+.. ...++..+++|+..|+.|........+++....++||++++
T Consensus 334 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~ 412 (608)
T 3szr_A 334 KYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFE 412 (608)
T ss_dssp TSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHH
Confidence 99998765 45889999999999999999999999752 23345566788888876544332222333445578999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHhHHHH
Q 045702 413 QNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPA 492 (728)
Q Consensus 413 ~~~~G~~~~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a 492 (728)
++++|+++|+|+|+.+|+.||++||++|++||++|++.|++++..++..+..++|.|||+|++++.+++.++++++..+|
T Consensus 413 ~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a 492 (608)
T 3szr_A 413 NQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREG 492 (608)
T ss_dssp HHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcccCCCccccchhHHHHHHHHHhhhccCCCCCCCCCcccccccccCCCCCCCCcccccccccCCCCC
Q 045702 493 ERMIDSLIEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQDGTDGEKGTLSEIGQRFGLTSQGRHSQSNNQRAASVGGNS 572 (728)
Q Consensus 493 ~~~i~~li~~E~~~inT~hpdF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (728)
+++|+++|+||+.| +|++|.|.. . .
T Consensus 493 ~~~i~~li~mE~~~-~~~d~~~~~--------------~------------------------------------~---- 517 (608)
T 3szr_A 493 EKLIRLHFQMEQIV-YGAFQSSSA--------------T------------------------------------D---- 517 (608)
T ss_dssp HHHHHHHHHHHHHC-CCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHhhcc-ccCCccccC--------------C------------------------------------C----
Confidence 99999999999976 466665530 0 0
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045702 573 SSRTWGFPIIFGGKVQAGESPASRSPHETLHNVEQLPSTIQLTEPPSILGPLEMTEQEAVEILVTKLLLQSYYDVVRKNV 652 (728)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~~e~~e~~~I~~li~sYf~Ivrk~i 652 (728)
. +.. .|+.+|+|||+||+|||
T Consensus 518 --~---------------------------------------------------~~~------ei~~~l~sY~~iv~~~~ 538 (608)
T 3szr_A 518 --S---------------------------------------------------SME------EIFQHLMAYHQEASKRI 538 (608)
T ss_dssp ------------------------------------------------------CTT------HHHHHHHHHHHHHHHHH
T ss_pred --c---------------------------------------------------cHH------HHHHHHHHHHHHHHHHH
Confidence 0 001 17999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045702 653 QDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKEVSLVLQQAVQTLDEVE 721 (728)
Q Consensus 653 ~D~VPKaIm~fLVn~~~~~Lq~~Lv~~Ly~~~~~~~LL~E~~~i~~kR~~l~~~l~~L~~A~~~L~~v~ 721 (728)
+|+|||+||||||+++++.||++|++.||+.+.+++||+|||++++||++|++++++|++|+++|.+|+
T Consensus 539 ~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 539 SSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=3.3e-48 Score=423.09 Aligned_cols=320 Identities=48% Similarity=0.769 Sum_probs=286.6
Q ss_pred hhhHHHHHHHHHHhhcccCCCCC--------CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeC
Q 045702 19 GSSVIPIINRLQDIFSPVDGELS--------KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNR 90 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~~--------~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~ 90 (728)
|+.|++++|+|++++..+ |... .+++|+|+|||++|||||||||+|+|.+|+|++.++|||+|+++++.+.
T Consensus 1 ~~~l~~~~~~l~~~~~~~-~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 1 MENLISLVNKIQRACTAL-GDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI 79 (360)
T ss_dssp -CCHHHHHHHTTTTTTSC-SSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHhh-CccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC
Confidence 789999999999999999 7421 3689999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCc
Q 045702 91 PRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQP 170 (728)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~ 170 (728)
+... ..|+.+.+.++..+.+|..++..+..++....|.+.+|+.+++.+++.+|..++++||||||+.+....+++
T Consensus 80 ~~~~----~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~ 155 (360)
T 3t34_A 80 DDGT----REYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQS 155 (360)
T ss_dssp SSCS----CCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCC
T ss_pred CCcc----cceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCc
Confidence 6432 467777788888899999999999999999999999999999999999999999999999999988777888
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCC
Q 045702 171 TDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRL 250 (728)
Q Consensus 171 ~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~ 250 (728)
.++...+..++..|+.+++++||+|++++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+++.+...++++
T Consensus 156 ~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~ 235 (360)
T 3t34_A 156 DSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY 235 (360)
T ss_dssp SSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS
T ss_pred hhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccC
Confidence 88888999999999999999999999999898888989999999999999999999999999887777888888899999
Q ss_pred ceeEeecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 045702 251 GYVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAK 330 (728)
Q Consensus 251 g~~~v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~ 330 (728)
||++|+++++++++...++.++...|..||.++|+|+.+..++|+.+|+++|+++|.+||+++||.++.+|+.++.++++
T Consensus 236 ~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~ 315 (360)
T 3t34_A 236 PWVGVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELET 315 (360)
T ss_dssp CCEEECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTC
T ss_pred CeEEEEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChH
Q 045702 331 ELQKYGDVMESKA 343 (728)
Q Consensus 331 eL~~lg~~~~~~~ 343 (728)
+|++||+++++++
T Consensus 316 ~l~~lg~~~~~~~ 328 (360)
T 3t34_A 316 ELSRLGKPIAHGT 328 (360)
T ss_dssp C------------
T ss_pred HHHHcCCCCCCCH
Confidence 9999999988654
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=1.5e-46 Score=408.67 Aligned_cols=340 Identities=56% Similarity=0.887 Sum_probs=311.7
Q ss_pred hhhhhhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCC
Q 045702 15 STTIGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNP 94 (728)
Q Consensus 15 ~~~~~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~ 94 (728)
+...|++|++++++|+|.++.+ |....+++|+|+|||.+|||||||+|+|+|.+|+|++.++||++|+++++.+.+
T Consensus 2 ~~~~~~~l~~~~~~l~d~l~~~-g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--- 77 (353)
T 2x2e_A 2 PEFSMEDLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--- 77 (353)
T ss_dssp ----CCSCHHHHHHHHHHHHTT-TCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS---
T ss_pred cchhHHHHHHHHHHHHHHHHHc-CCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC---
Confidence 3445899999999999999999 988889999999999999999999999999999999999999999999998765
Q ss_pred CCCccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHH
Q 045702 95 GDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIE 174 (728)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~ 174 (728)
.+|+++++.++..+.+++.+...++.++.++.|.+.+++..++.+++++|+..+++||||||+.+.+.++++.++.
T Consensus 78 ----~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~ 153 (353)
T 2x2e_A 78 ----TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 153 (353)
T ss_dssp ----SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHH
T ss_pred ----ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHH
Confidence 3788898888989999999999999999999898899999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeE
Q 045702 175 ARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVG 254 (728)
Q Consensus 175 ~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 254 (728)
+.+..++..|+..++++||+|++++.++.+++++.+++.+++.+.|+|+|+||+|+++.+.+..+++.+...++++||+.
T Consensus 154 ~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 233 (353)
T 2x2e_A 154 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 233 (353)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceE
Confidence 89999999999999999999999999999999878999999999999999999999988776667888888888999999
Q ss_pred eecCChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 045702 255 VVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQK 334 (728)
Q Consensus 255 v~~rs~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~ 334 (728)
|.++|+.+......+.+++..|..||.+++.|..+..++|+..|++.|++.|..||++++|.++.+|+.++..++.+|++
T Consensus 234 v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~ 313 (353)
T 2x2e_A 234 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEE 313 (353)
T ss_dssp CCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888788889998999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChH---HHHHHHHHHHHHHHHHHHH
Q 045702 335 YGDVMESKA---EKETMLLNILTKYCEAFSA 362 (728)
Q Consensus 335 lg~~~~~~~---~~~~~l~~~~~~f~~~~~~ 362 (728)
||+.+++++ .++.+|++++++|++.|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 314 YKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 998765543 3458999999999999974
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=340.85 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccchhHHHHHHHHHHHhhhhcCCCC----CCCHHHHHHHHHHhcCC
Q 045702 343 AEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQ----DLTDEDIRTAIQNATGP 418 (728)
Q Consensus 343 ~~~~~~l~~~~~~f~~~~~~~l~G~~~~~~~~~~~g~~ri~~~f~~~f~~~~~~~~~~~----~~~~~~i~~~i~~~~G~ 418 (728)
.++..||+..++.|++.+.+++.|.... ..|++||...+++.|.++...++... ....++|.++.+++||+
T Consensus 4 ~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGr 78 (271)
T 3ljb_A 4 NEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGR 78 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCc
Confidence 4888999999999999999999999753 23667777777666665544332211 11236788899999999
Q ss_pred CCCCCCCchhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045702 419 RNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDS 498 (728)
Q Consensus 419 ~~~~f~p~~~fe~lv~~~i~~~~~p~~~~~~~V~~~l~~i~~~~~~~~~~rfp~L~~~i~~~v~~~l~~~~~~a~~~i~~ 498 (728)
++|||+|+.+||.||++||++|++||++|++.|+++|.+++.+++.++|.|||+|++++.++|.+++.+|..+|+++|++
T Consensus 79 ELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~ 158 (271)
T 3ljb_A 79 ELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRL 158 (271)
T ss_dssp ----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcccCCCccccchhHHHHHHHHHhhhccCCCCCCCCCcccccccccCCCCCCCCcccccccccCCCCCCCCCCC
Q 045702 499 LIEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQDGTDGEKGTLSEIGQRFGLTSQGRHSQSNNQRAASVGGNSSSRTWG 578 (728)
Q Consensus 499 li~~E~~~inT~hpdF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (728)
+|+||+ +++|+|+.|.+..+.+ +.... . +.... + ..
T Consensus 159 ~~~mE~-~vytqD~~Y~~~l~~~-------r~~~~--~-----------------------~~~~~---~-----~~--- 194 (271)
T 3ljb_A 159 HFQMEQ-IVYCQDQVYRGALQKV-------REKEL--E-----------------------EEKKK---K-----SW--- 194 (271)
T ss_dssp HHHHHT-SCC----------------------------------------------------------------------
T ss_pred HHHHhc-ccccCCHHHHHHHHHH-------HHHHh--c-----------------------ccccc---c-----cc---
Confidence 999999 6789999888643221 11000 0 00000 0 00
Q ss_pred cccccCCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 045702 579 FPIIFGGKVQAGESPASRSPHETLHNVEQLPSTIQLTEPPSILGPLEMTEQEAVEILVTKLLLQSYYDVVRKNVQDLVPK 658 (728)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~s~~e~~e~~~I~~li~sYf~Ivrk~i~D~VPK 658 (728)
+..+... + . +. ...++.|+.+|.|||+||++|++|+|||
T Consensus 195 -~~~~~~~-------------------------------~----~---~~--~~~~~Ei~~~l~sYf~i~~~rl~d~IP~ 233 (271)
T 3ljb_A 195 -DFGAFQS-------------------------------S----S---AT--DSSMEEIFQHLMAYHQEASKRISSHIPL 233 (271)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccC-------------------------------C----C---Cc--cchHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 0000000 0 0 00 0013447899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHhhhcCCHHH
Q 045702 659 SIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEV 696 (728)
Q Consensus 659 aIm~fLVn~~~~~Lq~~Lv~~Ly~~~~~~~LL~E~~~i 696 (728)
+||||||+.+++.||++|++.||+.+.+++||+|++++
T Consensus 234 ~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 234 IIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 99999999999999999999999999999999999985
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=5.5e-39 Score=343.38 Aligned_cols=314 Identities=56% Similarity=0.957 Sum_probs=250.9
Q ss_pred hhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCC-CCCc
Q 045702 20 SSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNP-GDDG 98 (728)
Q Consensus 20 ~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~-~~~~ 98 (728)
++|++++++|+++++.+ |.. .+++|+|+|||.+|||||||+|+|+|.+++|++.++||++|++++..+.+... ....
T Consensus 1 ~~~~~~~~~l~~~~~~~-~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~ 78 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTL-GSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQT 78 (315)
T ss_dssp CCHHHHHHHHHHHTTTS-SSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCC
T ss_pred CchHHHHHHHHHHHHHc-CCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccch
Confidence 47999999999999999 987 89999999999999999999999999999999999999999999888764321 1223
Q ss_pred cchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHH
Q 045702 99 REWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIR 178 (728)
Q Consensus 99 ~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~ 178 (728)
..|+.+.+.++..+.++.++.+++...+.++.|.+.+++.+++.+++.+|...+++||||||+.+.+..+++..+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~ 158 (315)
T 1jwy_B 79 QEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIR 158 (315)
T ss_dssp CCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHH
T ss_pred hhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHH
Confidence 57888888899999999999999999988888888899999999999999999999999999987655556666777888
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecC
Q 045702 179 KMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 179 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
.++..|+..+|++|+++.+++.++...+...+++.+++.+.|+++|+||+|+.+......+.+.+...+++++|+.+.+.
T Consensus 159 ~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 238 (315)
T 1jwy_B 159 RMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINR 238 (315)
T ss_dssp HHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecC
Confidence 99999999999888888877778776666789999998899999999999999877655577776666777899999999
Q ss_pred ChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 045702 259 SQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKY 335 (728)
Q Consensus 259 s~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~eL~~l 335 (728)
+..+++.+..+.+.+..+..||..+++|..+..+.|+..|...|.+.+..++++++|.+..+|+..+.+++++|++|
T Consensus 239 sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 239 SQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp CHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 99988878889999999999999988899888889999999999999999999999999999999999999999875
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=1.1e-36 Score=322.72 Aligned_cols=299 Identities=61% Similarity=0.973 Sum_probs=266.9
Q ss_pred hhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCc
Q 045702 19 GSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDG 98 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~ 98 (728)
|++|++++++|+|.++.+ |.....++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+...
T Consensus 1 ~~~~~~~~~~l~~~l~~~-~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~------ 73 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT------ 73 (299)
T ss_dssp CTTHHHHHHHHHHHHTTS-CCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS------
T ss_pred CHHHHHHHHHHHHHHHhc-CCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCc------
Confidence 789999999999999999 9888889999999999999999999999999999999999999999999887653
Q ss_pred cchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHH
Q 045702 99 REWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIR 178 (728)
Q Consensus 99 ~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~ 178 (728)
+|..+.+..|..+.+++.+...++..+.++.|.+.+++.+.+.+++++|...+++||||||+.+...++++.++...+.
T Consensus 74 -~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~ 152 (299)
T 2aka_B 74 -EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 152 (299)
T ss_dssp -CEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHH
T ss_pred -ccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHH
Confidence 5777777778888889988888888888888888899999999999999888999999999987766566777777889
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecC
Q 045702 179 KMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 179 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
.++..|+..++++||+|++++.++..++...+++.+++.+.|+++|+||+|+.+.+....+.+++....++.||+.+.+.
T Consensus 153 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (299)
T 2aka_B 153 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNR 232 (299)
T ss_dssp HHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCC
T ss_pred HHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECC
Confidence 99999999999899899999988988887789999999999999999999999876655577777666777899999999
Q ss_pred ChhhhhccccHHHHHHHHHHhhccCCCCCccccccChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 045702 259 SQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRL 325 (728)
Q Consensus 259 s~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l 325 (728)
|+.+......+.+.+..|..||..++.|.....++|+..|++.|.+.+..|+++++|.+..+|+.++
T Consensus 233 SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 9887766677888888899999888899999999999999999999999999999999999998763
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=2.6e-18 Score=201.50 Aligned_cols=171 Identities=19% Similarity=0.278 Sum_probs=113.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCC--cccChHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGK--RFFDFTKVRQE 121 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~--~~~d~~~i~~~ 121 (728)
+.++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+...... .....+|. ...++..+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~---------t~~~~~g~~~~~~~~~~i~~~ 138 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV---------TIHFNDGKSPQQLDFQNFKYK 138 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE---------EEEESSSCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE---------EEEEcCCCcccccChhhhhhh
Confidence 34689999999999999999999999999999999999999976532210 00000111 11122222111
Q ss_pred H---HHHhhhhcCCCCCcccceEEEEEecCCC---cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEE
Q 045702 122 I---MAETNKEAGSNRGVSEKQIGLKISSPNV---LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAV 195 (728)
Q Consensus 122 i---~~~~~~~~g~~~~~s~~~i~l~i~~p~~---~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V 195 (728)
+ .+....+...+.........++++.|.. .+++||||||+.... ....++..|+..+| +||+|
T Consensus 139 ~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----------~~~~~~~~~i~~aD-~vL~V 207 (695)
T 2j69_A 139 YTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----------ARNELSLGYVNNCH-AILFV 207 (695)
T ss_dssp SCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----------TCHHHHTHHHHSSS-EEEEE
T ss_pred hcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----------hHHHHHHHHHHhCC-EEEEE
Confidence 0 0011112233344455677778877764 379999999987431 13467889999999 66666
Q ss_pred ecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 196 SPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 196 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
++++...+..+...+.+.+...+.++++|+||+|+....
T Consensus 208 vda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 208 MRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp EETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred EeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 777777766663334446666688999999999998653
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.47 E-value=1.5e-13 Score=145.32 Aligned_cols=124 Identities=24% Similarity=0.282 Sum_probs=82.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
...|++||.+|+|||||+|+|+|..+..++.. .+||......+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~------------------------------------ 50 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL------------------------------------ 50 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE------------------------------------
Confidence 45799999999999999999999987443322 23333221110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.. ....+.||||||+.+.. ..+.+.+...+..|++.+|+ +++|++++..+.
T Consensus 51 ----------------------~~-~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~-il~VvD~~~~~~ 101 (301)
T 1wf3_A 51 ----------------------TE-GRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNA-VVWVVDLRHPPT 101 (301)
T ss_dssp ----------------------EE-TTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSE-EEEEEETTSCCC
T ss_pred ----------------------Ee-CCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCE-EEEEEECCCCCC
Confidence 00 11258999999987532 24566778889999999995 555555555454
Q ss_pred cHHHHHHHHHhCCC--CCceEEeeccCCCCCCC
Q 045702 204 TSDALQMAREADPT--GSRTIGVITKLDIMDRG 234 (728)
Q Consensus 204 ~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 234 (728)
..+ ..+++.+... +.|+++|+||+|+....
T Consensus 102 ~~~-~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 102 PED-ELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred hHH-HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 443 4444444433 68999999999998653
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.47 E-value=7e-13 Score=140.73 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
...|+++|.+|||||||+|+|+|..+...+..+ +|+......+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~------------------------------------ 53 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK------------------------------------ 53 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEE------------------------------------
Confidence 347999999999999999999999874333322 3333322111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.......++||||||+.+... ...+.+.+...+..|+..+|+ +++|++++....
T Consensus 54 ----------------------~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~-il~VvD~~~~~~ 107 (308)
T 3iev_A 54 ----------------------NIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADV-ILFMIDATEGWR 107 (308)
T ss_dssp ----------------------EETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSE-EEEEEETTTBSC
T ss_pred ----------------------ecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCE-EEEEEeCCCCCC
Confidence 111012589999999975431 135667788899999999995 555555555555
Q ss_pred cHHHHHH-HHHhCCCCCceEEeeccCCCCC
Q 045702 204 TSDALQM-AREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 204 ~~~~l~l-~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+ ..+ ++.+...+.|+++|+||+|+..
T Consensus 108 ~~~-~~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 108 PRD-EEIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHH-HHHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred chh-HHHHHHHHHhcCCCEEEEEECccCCC
Confidence 555 444 6666666789999999999984
No 11
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.41 E-value=4.6e-13 Score=134.45 Aligned_cols=129 Identities=23% Similarity=0.304 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCC-cccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFL-PRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~l-P~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
...|+|+|+|..|+|||||+|+|+|..++ ..+.. .+|+.+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~----------------------------------- 71 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYF----------------------------------- 71 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEE-----------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEE-----------------------------------
Confidence 45789999999999999999999998732 22111 122222111
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCe--EEEEEecC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENC--IILAVSPA 198 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~--iIL~V~~a 198 (728)
.+.......++||||||+..... +....+.+..++..|+...+. ++++|+++
T Consensus 72 -----------------------~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~ 125 (223)
T 4dhe_A 72 -----------------------SVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDA 125 (223)
T ss_dssp -----------------------EESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEET
T ss_pred -----------------------EecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeC
Confidence 11111123689999999875432 223456778888899888442 46666666
Q ss_pred CCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 199 NSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 199 ~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
...+...+ ..+++.+...+.++++|+||+|+.+.
T Consensus 126 ~~~~~~~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 126 RRPLTELD-RRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp TSCCCHHH-HHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred CCCCCHHH-HHHHHHHHhcCCCEEEEEeccccCCh
Confidence 65555444 56666666667899999999999864
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.38 E-value=1.5e-12 Score=135.72 Aligned_cols=137 Identities=21% Similarity=0.297 Sum_probs=84.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.+|+|||.+|+|||||+|+|+|.+..+.+...++...
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------- 45 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-------------------------------------------
Confidence 4799999999999999999999876544321111000
Q ss_pred hhhhcCCCCCcccceEEEEEecCCC-cCeEEEeCCCCcccCCC-CCchhHHHHHHHHHHHHhhc-------------CCe
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNV-LNMTLVDLPGITKVPVG-DQPTDIEARIRKMIMAYIRQ-------------ENC 190 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~-~~LtlVDtPGi~~~~~~-~~~~~~~~~~~~~~~~yi~~-------------~~~ 190 (728)
..++..+.....+...+. ..++||||||+...... ..-..+...+.+....|+.. .|+
T Consensus 46 -------~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~ 118 (274)
T 3t5d_A 46 -------KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQC 118 (274)
T ss_dssp ----------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCE
T ss_pred -------CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeE
Confidence 001111111222222211 26899999999644221 12233444455555777776 667
Q ss_pred EEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 191 IILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 191 iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+++++.++...+...+ ..+++.+.. +.++|+|+||+|+....
T Consensus 119 ~l~~i~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 119 CLYFIAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp EEEEECSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred EEEEecCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 7888878776777666 778888887 89999999999998643
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.37 E-value=3.8e-12 Score=124.34 Aligned_cols=125 Identities=22% Similarity=0.217 Sum_probs=81.2
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
....|+|+|+|..|+|||||+|+|+|..+.+....+ +|+.+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~------------------------------------ 63 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF------------------------------------ 63 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEE------------------------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEE------------------------------------
Confidence 345789999999999999999999998742222111 1111100
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcC---CeEEEEEec
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQE---NCIILAVSP 197 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~---~~iIL~V~~ 197 (728)
... ...+.+|||||+.... .+......+..+...|+... + ++++|++
T Consensus 64 ----------------------~~~----~~~~~i~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~vi~v~d 113 (195)
T 3pqc_A 64 ----------------------YLV----NSKYYFVDLPGYGYAK---VSKKERMLWKRLVEDYFKNRWSLQ-MVFLLVD 113 (195)
T ss_dssp ----------------------EEE----TTTEEEEECCCBSSSC---CCHHHHHHHHHHHHHHHHHCTTEE-EEEEEEE
T ss_pred ----------------------EEE----CCcEEEEECCCCcccc---CChhhHHHHHHHHHHHHhcCcCce-EEEEEec
Confidence 000 0147899999976432 12333456778888888877 5 5566666
Q ss_pred CCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 198 ANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 198 a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
+.......+ ..+.+.+...+.|+++|+||+|+.+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 114 GRIPPQDSD-LMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp TTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCCCCCHHH-HHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 655544444 45555555557899999999999854
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.37 E-value=2.8e-12 Score=125.69 Aligned_cols=125 Identities=25% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC--cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD--ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
...++|+|+|..|+|||||+|+|+|..+.+.... .+|+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 62 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL-------------------------------------- 62 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE--------------------------------------
Confidence 4578999999999999999999999875322110 001100
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcC---CeEEEEEec
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQE---NCIILAVSP 197 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~---~~iIL~V~~ 197 (728)
....+. ..+.||||||+.... .+.+..+.+..++..|+... + ++++|++
T Consensus 63 --------------------~~~~~~----~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d 114 (195)
T 1svi_A 63 --------------------NFYIIN----DELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELK-AVVQIVD 114 (195)
T ss_dssp --------------------EEEEET----TTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEE-EEEEEEE
T ss_pred --------------------EEEEEC----CcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCC-EEEEEEE
Confidence 011111 158999999976432 23344567778888999887 6 4555555
Q ss_pred CCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 198 ANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 198 a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
++......+ ..+.+.+...+.++++|+||+|+.+..
T Consensus 115 ~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 115 LRHAPSNDD-VQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp TTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred CCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCChH
Confidence 655544444 445555554678999999999998654
No 15
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.36 E-value=1.5e-12 Score=148.53 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCC--cccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcc-cChHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFL--PRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRF-FDFTKVRQ 120 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~l--P~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~-~d~~~i~~ 120 (728)
..|.|+|+|.+|+|||||+|+|+|..+. +++..++|.+.+.+....... . .+|... .+.. .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~-----------i--~~g~~l~~~~~---~ 127 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEG-----------T--VPGNALVVDPE---K 127 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSE-----------E--ECCC-----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCccc-----------c--cCCceeeecCc---c
Confidence 5789999999999999999999999874 577777776655543221100 0 011110 0000 0
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHH--HHHHHHHHhhcCCeEEEEEecC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEAR--IRKMIMAYIRQENCIILAVSPA 198 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~--~~~~~~~yi~~~~~iIL~V~~a 198 (728)
....+...+..+....+++.+.++....++||||||+..... ..+... +..++..|+..+|++|+++...
T Consensus 128 ----~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~ 199 (550)
T 2qpt_A 128 ----PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDLIILLFDAH 199 (550)
T ss_dssp --------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETT
T ss_pred ----cHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCC
Confidence 000011112344556667776665556899999999975311 011111 4577888999999655555443
Q ss_pred CCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 199 NSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 199 ~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+.++...+ ..+++.+...+.++++|+||+|+.+..
T Consensus 200 ~~~~~~~~-~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 200 KLEISDEF-SEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp SCCCCHHH-HHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred cCCCCHHH-HHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 32444444 677788877788999999999998643
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.32 E-value=1.6e-12 Score=134.30 Aligned_cols=148 Identities=14% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.|+|+|+|.+|+|||||+|+|+|..+ .++.-+ +|.-...
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~--------------------------------------- 40 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKT--------------------------------------- 40 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEE---------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEE---------------------------------------
Confidence 48999999999999999999999874 332211 1111110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh--hcCCeEEEEEecCCCC
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI--RQENCIILAVSPANSD 201 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi--~~~~~iIL~V~~a~~d 201 (728)
..+.+.+ ..++||||||+.+....++... ..+.+...|+ ..+|++|+++. ++.
T Consensus 41 -----------------~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~---~~e~i~~~~~~~~~~d~vi~VvD-as~- 95 (256)
T 3iby_A 41 -----------------GEFLLGE---HLIEITDLPGVYSLVANAEGIS---QDEQIAAQSVIDLEYDCIINVID-ACH- 95 (256)
T ss_dssp -----------------EEEEETT---EEEEEEECCCCSSCC------C---HHHHHHHHHHHHSCCSEEEEEEE-GGG-
T ss_pred -----------------EEEEECC---eEEEEEeCCCcccccccccCCC---HHHHHHHHHHhhCCCCEEEEEee-CCC-
Confidence 0111111 1589999999975532211111 2345677788 88996555554 433
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccH--HHhHcCCCcccCCceeEeecCChhh
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNA--CNFLLGKVVPLRLGYVGVVNRSQED 262 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~rs~~~ 262 (728)
....+.+..++...+.|+++|+||+|+....... .+.+. ..++.+++.++++...+
T Consensus 96 --~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~---~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 96 --LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE---SLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp --HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH---HHHCSCEEECBGGGTBS
T ss_pred --chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH---HHcCCCEEEEECCCCCC
Confidence 1233667778887889999999999997543211 11111 11345666666665443
No 17
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.31 E-value=3.3e-12 Score=120.67 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=48.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.||||||...... ........+..++..++++|+++. ++......+ ..+.+.+...+.++++|+||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d-~~~~~~~~~-~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVD-GRAELTQAD-YEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEE-SSSCCCHHH-HHHHHHHHHHTCCEEEEEECCCSG
T ss_pred eEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEE-CCCcccHhH-HHHHHHHHhcCCCEEEEEECcccc
Confidence 579999999864321 123556777889999996665554 443333332 223333332468999999999998
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
+.
T Consensus 122 ~~ 123 (161)
T 2dyk_A 122 KH 123 (161)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.30 E-value=1.3e-11 Score=138.05 Aligned_cols=152 Identities=17% Similarity=0.259 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCcc
Q 045702 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGR 99 (728)
Q Consensus 21 ~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~ 99 (728)
.+-++++.+.+.+.........-..++|+++|.+++|||||+|+|+|......+..+ +|+-+.
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~---------------- 234 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV---------------- 234 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTT----------------
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEE----------------
Confidence 455555555554443311122345679999999999999999999987642222111 111110
Q ss_pred chhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHH
Q 045702 100 EWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRK 179 (728)
Q Consensus 100 ~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~ 179 (728)
...+++.+ ..++||||||+.+........+ .....
T Consensus 235 ----------------------------------------~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e--~~~~~ 269 (456)
T 4dcu_A 235 ----------------------------------------DTSFTYNQ---QEFVIVDTAGMRKKGKVYETTE--KYSVL 269 (456)
T ss_dssp ----------------------------------------SEEEEETT---EEEEETTGGGTTTBTTBCCCCS--HHHHH
T ss_pred ----------------------------------------EEEEEECC---ceEEEEECCCCCcCcccchHHH--HHHHH
Confidence 00111111 1589999999875432221111 12222
Q ss_pred HHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 180 MIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 180 ~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
....|++.++ ++++|+++...+..++ ..++..+...+.++|+|+||+|+.+...
T Consensus 270 ~~~~~~~~ad-~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 270 RALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHhhCC-EEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 3456899999 5555566766776666 6666666667899999999999987543
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.29 E-value=1.4e-11 Score=137.17 Aligned_cols=152 Identities=17% Similarity=0.243 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCcc
Q 045702 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGR 99 (728)
Q Consensus 21 ~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~ 99 (728)
.+-++++.+.+.+...+........++|+|||++|+|||||+|+|+|..+..++.- .+|+-...
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~--------------- 215 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--------------- 215 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC---------------
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE---------------
Confidence 45555666655554321111223467999999999999999999999875322211 11111100
Q ss_pred chhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHH
Q 045702 100 EWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRK 179 (728)
Q Consensus 100 ~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~ 179 (728)
..+++.+ ..++||||||+.+.....+ .++.....
T Consensus 216 -----------------------------------------~~~~~~~---~~~~l~DT~G~~~~~~~~~--~~e~~~~~ 249 (436)
T 2hjg_A 216 -----------------------------------------TSFTYNQ---QEFVIVDTAGMRKKGKVYE--TTEKYSVL 249 (436)
T ss_dssp -----------------------------------------EEEEETT---EEEEETTHHHHTCBTTBCC--CCSHHHHH
T ss_pred -----------------------------------------EEEEECC---eEEEEEECCCcCcCccccc--hHHHHHHH
Confidence 0111111 1379999999864432111 11112112
Q ss_pred HHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 180 MIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 180 ~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
....|++.+| ++++|.+++.....++ ..++..+...+.++|+|+||+|+.+...
T Consensus 250 ~~~~~~~~ad-~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 250 RALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHhCC-EEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 2346889999 5555556666666666 5666666666899999999999987543
No 20
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.29 E-value=7.7e-12 Score=127.47 Aligned_cols=129 Identities=20% Similarity=0.264 Sum_probs=73.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC--cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD--ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~--~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
...++|+|||..|+|||||+|+|+|..+...+.. .+|+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 72 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS---------------------------------- 72 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE----------------------------------
Confidence 3457999999999999999999999886443322 2333332211
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
+.+.+ ..++||||||+...... ..+....+...+..+...++++|+++ +++
T Consensus 73 ----------------------~~~~~---~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~-d~~- 123 (239)
T 3lxx_A 73 ----------------------SSWKE---TELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVV-PLG- 123 (239)
T ss_dssp ----------------------EEETT---EEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEE-ETT-
T ss_pred ----------------------EEeCC---ceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEe-eCC-
Confidence 11111 14799999999865322 23344566666677777889555555 443
Q ss_pred CcccHH--HHHHHHH-hCC-CCCceEEeeccCCCCCCC
Q 045702 201 DLATSD--ALQMARE-ADP-TGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 201 d~~~~~--~l~l~~~-~d~-~~~rti~VltK~D~~~~~ 234 (728)
.+...+ ++..+.. +.. ...++++|+||+|+....
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 124 RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 333333 2222221 111 235899999999998653
No 21
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.28 E-value=1.5e-12 Score=137.68 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=77.5
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..+.|++||.+|+|||||+|+|+|..+.+++..+ +||......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi------------------------------------ 50 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI------------------------------------ 50 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE------------------------------------
Confidence 3457999999999999999999998763332221 233221110
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCc-ccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGIT-KVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~-~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
+.. ....++|+||||+. ... ..+...+...+..++...|. +++|+++..
T Consensus 51 ----------------------~~~-~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~-vl~Vvd~~~- 100 (301)
T 1ega_A 51 ----------------------HTE-GAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVEL-VIFVVEGTR- 100 (301)
T ss_dssp ----------------------EEE-TTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEE-EEEEEETTC-
T ss_pred ----------------------EEE-CCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCE-EEEEEeCCC-
Confidence 000 11258999999986 210 11222333445667888884 455555544
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
+...+ ..+++.+...+.|.|+|+||+|+..
T Consensus 101 ~~~~~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 101 WTPDD-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCHHH-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CCHHH-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 65555 5666666666799999999999986
No 22
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.28 E-value=1.2e-11 Score=122.03 Aligned_cols=68 Identities=22% Similarity=0.252 Sum_probs=45.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-. .++..+......+.++++|+||+
T Consensus 58 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (203)
T 1zbd_A 58 KLQIWDTAGLE-------------RYRTITTAYYRGAMGFILMYDITN-EESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 123 (203)
T ss_dssp EEEEEEECCSG-------------GGHHHHHTTGGGCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCSSCEEEEEEECT
T ss_pred EEEEEECCCch-------------hhcchHHHhhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 58999999964 234567889999996666665433 21111 22333444444578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 124 Dl~~~ 128 (203)
T 1zbd_A 124 DMEDE 128 (203)
T ss_dssp TCTTS
T ss_pred ccCcc
Confidence 99753
No 23
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.27 E-value=6.6e-12 Score=120.84 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
.-..++|+|+|..++|||||+|+|++..+.+.....+|.-..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 46 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIG-------------------------------------- 46 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCC--------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeee--------------------------------------
Confidence 346789999999999999999999998863321111111100
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
...+.+.+ ..+.||||||..... .+...|+..+|++|+++ +++..
T Consensus 47 ------------------~~~~~~~~---~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~ 91 (178)
T 2lkc_A 47 ------------------AYQVTVND---KKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVV-AADDG 91 (178)
T ss_dssp ------------------CCEEEETT---EEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEE-ETTCC
T ss_pred ------------------EEEEEeCC---ceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEE-ECCCC
Confidence 00111111 147899999975332 12235678888666655 44433
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
. ....+..++.+...+.++++|+||+|+.+.
T Consensus 92 ~-~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 92 V-MPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp C-CHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred C-cHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 3 334466777776667899999999999874
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=1.2e-11 Score=119.11 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
..+|+|+|..++|||||+|+|++..+.+.....++......
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~--------------------------------------- 50 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN--------------------------------------- 50 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE---------------------------------------
Confidence 45899999999999999999999876432221111111000
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT 204 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~ 204 (728)
..+.+.+ ....+.||||||.. ....++..|+..++++|+++...+ ...-
T Consensus 51 ----------------~~~~~~~-~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~-~~s~ 99 (180)
T 2g6b_A 51 ----------------KVLDVDG-VKVKLQMWDTAGQE-------------RFRSVTHAYYRDAHALLLLYDVTN-KASF 99 (180)
T ss_dssp ----------------EEEEETT-EEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTC-HHHH
T ss_pred ----------------EEEEECC-EEEEEEEEeCCCcH-------------HHHHHHHHHccCCCEEEEEEECCC-HHHH
Confidence 0001100 01148999999944 334567789999996666665433 2111
Q ss_pred ---HHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 205 ---SDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 205 ---~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..++..+....+.+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 100 DNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 22344455555567899999999999864
No 25
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.24 E-value=1.3e-11 Score=116.88 Aligned_cols=68 Identities=24% Similarity=0.248 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---H-HHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---A-LQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~-l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||... ...+...|++.++.+++++...+.. .-.. + ..+.+.....+.|+++|+||
T Consensus 52 ~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 52 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 479999999542 2346677899999766666544321 1111 1 12334444567899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 118 ~Dl~~~ 123 (167)
T 1kao_A 118 VDLESE 123 (167)
T ss_dssp GGGGGG
T ss_pred Cccccc
Confidence 999753
No 26
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.24 E-value=5.4e-11 Score=118.77 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=45.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC----CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADP----TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~----~~~rti~VltK 227 (728)
.+.||||||. +....++..|++.++++|+++. ++....-.....++..+.. .+.++++|+||
T Consensus 85 ~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~D-~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK 150 (217)
T 2f7s_A 85 HLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMFD-LTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 150 (217)
T ss_dssp EEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEEC
T ss_pred EEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEC
Confidence 4899999993 2456778899999996666554 4333222333344555543 46899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+.+
T Consensus 151 ~Dl~~ 155 (217)
T 2f7s_A 151 ADLPD 155 (217)
T ss_dssp TTCGG
T ss_pred Ccccc
Confidence 99965
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.24 E-value=1.4e-11 Score=118.71 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
..++|+|+|..++|||||+|+|++..+. .....+|......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~-------------------------------------- 48 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTK-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEEE--------------------------------------
Confidence 4468999999999999999999988652 2221222211110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+.+.+ ....+.||||||.... ..+...|+..++++|+++...+ ...
T Consensus 49 ------------------~~~~~~-~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s 95 (181)
T 2fn4_A 49 ------------------ICSVDG-IPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAIND-RQS 95 (181)
T ss_dssp ------------------EEEETT-EEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTC-HHH
T ss_pred ------------------EEEECC-EEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCC-HHH
Confidence 000000 0114789999996532 2345668889997666664433 111
Q ss_pred cHH---HH-HHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSD---AL-QMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~---~l-~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
-.. ++ .+.+.....+.++++|+||+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 96 FNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 111 11 3335555668899999999999753
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.24 E-value=2.3e-11 Score=135.42 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.|.|++||.+|+|||||+|+|+|..+..++.. .+||-....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~-------------------------------------- 44 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS-------------------------------------- 44 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEE--------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEE--------------------------------------
Confidence 58999999999999999999999765222111 122211110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+...+ ..++||||||+.... .++.+.+..++..|++.+| ++++|+++.....
T Consensus 45 --------------------~~~~~~-~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvD~~~~~~ 97 (436)
T 2hjg_A 45 --------------------SAEWLN-YDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVT 97 (436)
T ss_dssp --------------------ECTTCS-SCCEEEC--------------CHHHHHHHHHHHHHHHCS-EEEEEEETTTCSC
T ss_pred --------------------EEEECC-ceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCC
Confidence 011111 158999999986321 1256678889999999999 5555556665555
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..+ ..+++.+...+.++++|+||+|+...
T Consensus 98 ~~d-~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 98 AAD-EEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHH-HHHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECccCccc
Confidence 555 56777777778999999999999764
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=1.3e-11 Score=138.18 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=77.6
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
....|.|++||.+|+|||||+|+|+|..+..+... .+|+-...
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~------------------------------------ 63 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY------------------------------------ 63 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEE------------------------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEE------------------------------------
Confidence 45689999999999999999999999765222111 12222111
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
..+...+ ..++||||||+.... ..+.+.++.++..|+..+| +||+|+++..
T Consensus 64 ----------------------~~~~~~~-~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~VvD~~~ 114 (456)
T 4dcu_A 64 ----------------------SSAEWLN-YDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGRE 114 (456)
T ss_dssp ----------------------EECTTCS-SCCEEECCCC-----------CCHHHHHHHHHHHHHHCS-EEEEEEESSS
T ss_pred ----------------------EEEEECC-ceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCC-EEEEEEeCCC
Confidence 1111111 258999999987321 2245678889999999999 4555556666
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+...+ ..+++.+...+.++++|+||+|+.+.
T Consensus 115 ~~~~~d-~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 115 GVTAAD-EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp CSCHHH-HHHHHHHTTCCSCEEEEEECC-----
T ss_pred CCChHH-HHHHHHHHHcCCCEEEEEECccchhh
Confidence 666655 67888888789999999999999754
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=120.60 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=46.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||... ...+...|+..+|++|+++...+... ....++..+......+.++++|+||+|
T Consensus 66 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 132 (196)
T 3tkl_A 66 KLQIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132 (196)
T ss_dssp EEEEEEECCSGG-------------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCcHh-------------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 489999999542 23456778999996666665443111 112234445556566789999999999
Q ss_pred CCCCC
Q 045702 230 IMDRG 234 (728)
Q Consensus 230 ~~~~~ 234 (728)
+.+..
T Consensus 133 l~~~~ 137 (196)
T 3tkl_A 133 LTTKK 137 (196)
T ss_dssp CTTTC
T ss_pred ccccc
Confidence 97643
No 31
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.23 E-value=2.2e-11 Score=119.43 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
...+|+|+|..++|||||+|+|+|..+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3568999999999999999999998863
No 32
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.23 E-value=1e-11 Score=118.13 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=32.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHH----HhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAR----EADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~----~~d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|+..++++|+++...+.. .-.....+.. .....+.|+++|+||
T Consensus 50 ~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 115 (166)
T 3q72_A 50 SLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNK 115 (166)
T ss_dssp EEEEEECC----------------------------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEEC
T ss_pred EEEEEECCCCc-------------cchhhhhhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 47899999954 23456677899999777766544321 1111122222 222357899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 116 ~Dl~~~ 121 (166)
T 3q72_A 116 SDLVRS 121 (166)
T ss_dssp TTCCSS
T ss_pred cccccc
Confidence 999754
No 33
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.22 E-value=2.5e-11 Score=118.83 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|++.++++|+++...+ ...-. .++..+......+.++++|+||+
T Consensus 75 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~-~~s~~~~~~~l~~i~~~~~~~~piilv~nK~ 140 (193)
T 2oil_A 75 KAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTK-HQTYAVVERWLKELYDHAEATIVVMLVGNKS 140 (193)
T ss_dssp EEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTC-HHHHHTHHHHHHHHHTTSCTTCEEEEEEECG
T ss_pred EEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 4899999997532 2355678999996666654332 22111 22333333344578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 141 Dl~~~ 145 (193)
T 2oil_A 141 DLSQA 145 (193)
T ss_dssp GGGGG
T ss_pred Ccccc
Confidence 99753
No 34
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=1.7e-11 Score=136.51 Aligned_cols=123 Identities=22% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
+|.|++||.+|+|||||+|+|+|..+.-++.. .+||-....
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~-------------------------------------- 42 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQD-------------------------------------- 42 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEE--------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeE--------------------------------------
Confidence 48999999999999999999999764111111 122211110
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+++.+ ..+.||||||+..... ..+...++.++..|++.+|. |++|+++...+.
T Consensus 43 ------------------~~~~~~---~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~-il~V~D~~~~~~ 96 (439)
T 1mky_A 43 ------------------TVEWYG---KTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADL-VLFVVDGKRGIT 96 (439)
T ss_dssp ------------------EEEETT---EEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSE-EEEEEETTTCCC
T ss_pred ------------------EEEECC---eEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCE-EEEEEECCCCCC
Confidence 111111 1478999999864211 12335677889999999995 555556665555
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
..+ ..+++.+...+.++++|+||+|+..
T Consensus 97 ~~d-~~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 97 KED-ESLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp HHH-HHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred HHH-HHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 444 3444444444789999999999853
No 35
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=2.7e-11 Score=124.26 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc--ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI--CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-.+|+|||.+|+|||||+|+|+|..+...+... +|+.+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~---------------------------------- 66 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR---------------------------------- 66 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE----------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE----------------------------------
Confidence 347999999999999999999998865543322 44444322110
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+. ...++||||||+........ ......+......+...+|++|++ ++++. +
T Consensus 67 ----------------------~~---~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~~~~~~~d~il~V-~d~~~-~ 118 (247)
T 3lxw_A 67 ----------------------WD---KCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYLLSAPGPHALLLV-TQLGR-F 118 (247)
T ss_dssp ----------------------ET---TEEEEEEECCSCSSTTHHHH-STTSHHHHHHHHHHTTCCSEEEEE-EETTB-C
T ss_pred ----------------------EC---CcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHHhcCCCCCEEEEE-EeCCC-C
Confidence 00 11479999999974321100 001111222222334889955554 45543 4
Q ss_pred ccHH--HHHHHHHh-CC--CCCceEEeeccCCCCC
Q 045702 203 ATSD--ALQMAREA-DP--TGSRTIGVITKLDIMD 232 (728)
Q Consensus 203 ~~~~--~l~l~~~~-d~--~~~rti~VltK~D~~~ 232 (728)
...+ +++.++++ .+ .+.++|+|.||+|+.+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 119 TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 4333 23444443 22 1578999999999965
No 36
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.22 E-value=7.1e-12 Score=120.70 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..++|+|+|..++|||||+|+|++..+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999876
No 37
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.22 E-value=2e-11 Score=115.69 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HH-HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---AL-QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l-~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|+..++++|+++...+.+ .-.. ++ .+.+.....+.|+++|+||
T Consensus 53 ~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 118 (168)
T 1u8z_A 53 QIDILDTAGQE-------------DYAAIRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNK 118 (168)
T ss_dssp EEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEEEEECCCcc-------------hhHHHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 47999999954 23456778999999766666544321 1111 11 2333334457899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 119 ~Dl~~~ 124 (168)
T 1u8z_A 119 SDLEDK 124 (168)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999753
No 38
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.22 E-value=6.1e-11 Score=119.73 Aligned_cols=128 Identities=12% Similarity=0.168 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
...++|+|+|..|+|||||+|+|+|..+.+.....+|+....-
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 69 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVG------------------------------------- 69 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeee-------------------------------------
Confidence 3467999999999999999999999876322111122211110
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD- 201 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d- 201 (728)
.+.+ ....+.||||||....+..... . .....+..|...++++|+++...+..
T Consensus 70 -------------------~~~~---~~~~~~l~DtpG~~~~~~~~~~-~---~~~~~~~~~~~~~d~~i~v~d~~~~~s 123 (228)
T 2qu8_A 70 -------------------HFDH---KLNKYQIIDTPGLLDRAFENRN-T---IEMTTITALAHINGVILFIIDISEQCG 123 (228)
T ss_dssp -------------------EEEE---TTEEEEEEECTTTTTSCGGGCC-H---HHHHHHHHHHTSSEEEEEEEETTCTTS
T ss_pred -------------------eeec---CCCeEEEEECCCCcCcccchhh-h---HHHHHHHHhhccccEEEEEEecccccC
Confidence 0000 1125899999998643211110 1 11122345667778555555433321
Q ss_pred cccHHHHHHHHHhCCC--CCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADPT--GSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~ 233 (728)
+.......++..+... +.++++|+||+|+.+.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 124 LTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp SCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred cchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 2223335566666543 7899999999999764
No 39
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.22 E-value=2.5e-11 Score=116.62 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-. .++..++.....+.++++|+||+
T Consensus 65 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 130 (179)
T 1z0f_A 65 KLQIWDTAGQE-------------RFRAVTRSYYRGAAGALMVYDITR-RSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130 (179)
T ss_dssp EEEEEECTTGG-------------GTCHHHHHHHHTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEECCCCh-------------HhhhhHHHHhccCCEEEEEEeCcC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 48999999953 233567789999996666655433 22111 23333455555678999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 131 Dl~~~ 135 (179)
T 1z0f_A 131 DLEAQ 135 (179)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99653
No 40
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.22 E-value=6.8e-11 Score=132.49 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=73.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
.+|++||.+|+|||||+|+|+|.++..+.. ..+|+-+..-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~--------------------------------------- 284 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE--------------------------------------- 284 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCE---------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEE---------------------------------------
Confidence 589999999999999999999986422221 1223322111
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCc-ccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGIT-KVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~-~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+.+.+ ..++||||||+. ........ .--..+..|++.+|.+| +|++++....
T Consensus 285 -----------------~i~~~g---~~~~l~DTaG~~~~~~~~ve~-----~gi~~~~~~~~~aD~vl-~VvD~s~~~s 338 (482)
T 1xzp_A 285 -----------------EIVIRG---ILFRIVDTAGVRSETNDLVER-----LGIERTLQEIEKADIVL-FVLDASSPLD 338 (482)
T ss_dssp -----------------EEEETT---EEEEEEESSCCCSSCCTTCCC-----CCHHHHHHHHHHCSEEE-EEEETTSCCC
T ss_pred -----------------EEecCC---eEEEEEECCCccccchhhHHH-----HHHHHHHHHhhcccEEE-EEecCCCCCC
Confidence 111111 247999999987 43211110 11134567899999544 5555544433
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..+ ..+++.+. +.++|+|+||+|+.+.
T Consensus 339 ~~~-~~il~~l~--~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 339 EED-RKILERIK--NKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHH-HHHHHHHT--TSSEEEEEEECSSCCC
T ss_pred HHH-HHHHHHhc--CCCEEEEEECcccccc
Confidence 333 55555553 6899999999999753
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.22 E-value=1.4e-11 Score=117.43 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=45.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|+..++++|+++...+ ...-. .++..++.......++++|+||+
T Consensus 56 ~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~ 121 (170)
T 1z0j_A 56 KFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYDITK-EETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121 (170)
T ss_dssp EEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTSEEEEEEECT
T ss_pred EEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhCCCCCcEEEEEECC
Confidence 489999999742 23456778999996666664433 22212 23344455555678899999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 122 Dl~~~ 126 (170)
T 1z0j_A 122 DLTDV 126 (170)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99754
No 42
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.22 E-value=2.6e-11 Score=117.40 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
....+|+|+|..++|||||+|+|++..+ +.....++.......
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------ 58 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------ 58 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE------------------------------------
Confidence 3456899999999999999999998875 222222221111100
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
+.+.+ ....+.||||||... ...+...|+..++++|+++...+..
T Consensus 59 --------------------~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~- 103 (187)
T 2a9k_A 59 --------------------VVLDG-EEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEME- 103 (187)
T ss_dssp --------------------EEETT-EEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH-
T ss_pred --------------------EEECC-EEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHH-
Confidence 00000 001479999999542 2356678899999766666544321
Q ss_pred ccHH---HH-HHHHHhCCCCCceEEeeccCCCCCC
Q 045702 203 ATSD---AL-QMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~---~l-~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.-.. ++ .+.+.....+.++++|+||+|+.+.
T Consensus 104 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 104 SFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1111 11 2333344457899999999999753
No 43
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.21 E-value=3.7e-11 Score=119.35 Aligned_cols=118 Identities=20% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
..++|+|+|..++|||||+|+|++..+.+.....++.-...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 59 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--------------------------------------- 59 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---------------------------------------
Confidence 45799999999999999999999887632211111110000
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-c
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-L 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~ 202 (728)
..+.+.+. ...+.||||||.... ..++..|+..++++|+++...+.. +
T Consensus 60 -----------------~~~~~~~~-~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~ 108 (213)
T 3cph_A 60 -----------------KTVDINGK-KVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTF 108 (213)
T ss_dssp -----------------EEEEETTE-EEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHH
T ss_pred -----------------EEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHH
Confidence 01111110 124899999995422 234567889999666666543321 1
Q ss_pred cc-HHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 203 AT-SDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 203 ~~-~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.. ..++..+....+.+.++++|+||+|+.
T Consensus 109 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 109 TNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 11 223444555555678999999999994
No 44
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.20 E-value=7.4e-11 Score=127.78 Aligned_cols=127 Identities=19% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
...|.|++||.+|||||||+|+|+|..+...+.-.+|+-|+.-
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~------------------------------------- 219 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY------------------------------------- 219 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE-------------------------------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE-------------------------------------
Confidence 3577899999999999999999999875222222333333221
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.+.+ ..+.++||||+... .|.+..+.++. +..++..+|.+ ++|++++...
T Consensus 220 -------------------~i~~~g---~~v~l~DT~G~i~~----lp~~lve~f~~-tl~~~~~aD~i-l~VvD~s~~~ 271 (364)
T 2qtf_A 220 -------------------AIPINN---RKIMLVDTVGFIRG----IPPQIVDAFFV-TLSEAKYSDAL-ILVIDSTFSE 271 (364)
T ss_dssp -------------------EEEETT---EEEEEEECCCBCSS----CCGGGHHHHHH-HHHGGGGSSEE-EEEEETTSCH
T ss_pred -------------------EEEECC---EEEEEEeCCCchhc----CCHHHHHHHHH-HHHHHHhCCEE-EEEEECCCCc
Confidence 122222 24789999998532 23344444544 34578899954 4455544332
Q ss_pred ---cc--HHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 203 ---AT--SDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 203 ---~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.. ..+..+++.+...+.++|+|.||+|+...+
T Consensus 272 ~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 272 NLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred chHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 11 113456677766678999999999998654
No 45
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.20 E-value=9.2e-11 Score=120.97 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc--ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI--CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQ 120 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~--~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~ 120 (728)
...++|+|+|.+|||||||+|+|+|....+.+..+ +|+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------------- 65 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ---------------------------------- 65 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE----------------------------------
Confidence 34568999999999999999999998754543322 333222110
Q ss_pred HHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 121 EIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 121 ~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
+.+. ...+.||||||+..... ........+...+..+++.+|++|+++... .
T Consensus 66 ----------------------~~~~---~~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~ 117 (260)
T 2xtp_A 66 ----------------------GSWG---NREIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLG-R 117 (260)
T ss_dssp ----------------------EEET---TEEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEETT-C
T ss_pred ----------------------EEeC---CCEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEeCC-C
Confidence 0000 12489999999875532 122222344566677889999666655444 2
Q ss_pred CcccHH--HHHHHHHhCCC--CCceEEeec-cCCCCC
Q 045702 201 DLATSD--ALQMAREADPT--GSRTIGVIT-KLDIMD 232 (728)
Q Consensus 201 d~~~~~--~l~l~~~~d~~--~~rti~Vlt-K~D~~~ 232 (728)
+...+ .+..+.++... ..+.|+|+| |+|+..
T Consensus 118 -~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 118 -YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp -CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred -CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 44333 23344443221 467888888 999984
No 46
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.20 E-value=2.5e-11 Score=115.23 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=43.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc-HHHHH-HHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT-SDALQ-MAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~-l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+.. +.. ..++. +.+.....+.|+++|+||+
T Consensus 52 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 52 MLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 4899999996532 235567888999766666544321 111 11222 3333445678999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 119 Dl~~~ 123 (167)
T 1c1y_A 119 DLEDE 123 (167)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99753
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.19 E-value=4.1e-11 Score=116.63 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCC-CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADP-TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~-~~~rti~VltK 227 (728)
.+.||||||.. ....++..|++.+|++|+++...+ ...-.+ ++..+..... .+.++++|+||
T Consensus 71 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 71 HLQLWDTAGLE-------------RFRSLTTAFFRDAMGFLLLFDLTN-EQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEECCSG-------------GGHHHHHHTTTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHHcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 58999999964 234567889999996666654433 222222 2222233222 57899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+.+
T Consensus 137 ~Dl~~ 141 (195)
T 3bc1_A 137 SDLED 141 (195)
T ss_dssp TTCGG
T ss_pred ccccc
Confidence 99965
No 48
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=3.1e-11 Score=118.11 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=47.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||. +....+...|+..++++|+++...+... ....++..++.....+.++++|+||+|
T Consensus 73 ~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 139 (191)
T 3dz8_A 73 KLQIWDTAGQ-------------ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139 (191)
T ss_dssp EEEEECHHHH-------------HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEeCCCh-------------HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 4899999993 2456778899999996666665433111 112234455555556889999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 140 l~~~ 143 (191)
T 3dz8_A 140 MEEE 143 (191)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 9643
No 49
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.19 E-value=1.4e-11 Score=117.47 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=40.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-.. ++..++...+.+.++++|+||+
T Consensus 56 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 121 (170)
T 1z08_A 56 NLAIWDTAGQE-------------RFHALGPIYYRDSNGAILVYDITD-EDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121 (170)
T ss_dssp EEEEEECCCC--------------------CCSSTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHHGGGSEEEEEEECG
T ss_pred EEEEEECCCcH-------------hhhhhHHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 58999999954 233455678899996666665433 211111 2223333334568999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 122 Dl~~~ 126 (170)
T 1z08_A 122 DLEKE 126 (170)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 99753
No 50
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.19 E-value=8.1e-11 Score=122.31 Aligned_cols=126 Identities=15% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..++|+|+|..|+|||||+|+|+|..+.+.+.. .+|+.+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 81 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS------------------------------------ 81 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE------------------------------------
Confidence 356899999999999999999999886444332 2232222211
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~ 200 (728)
+... ...++||||||+..... +...+...+.+|+. .+|++++++.....
T Consensus 82 ----------------------~~~~-~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~ 132 (270)
T 1h65_A 82 ----------------------RSRA-GFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAY 132 (270)
T ss_dssp ----------------------EEET-TEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCC
T ss_pred ----------------------EeeC-CeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCC
Confidence 1111 12489999999865321 11122334455543 67866555433222
Q ss_pred CcccHH--HHHHHHHhCCCC--CceEEeeccCCCCCCC
Q 045702 201 DLATSD--ALQMAREADPTG--SRTIGVITKLDIMDRG 234 (728)
Q Consensus 201 d~~~~~--~l~l~~~~d~~~--~rti~VltK~D~~~~~ 234 (728)
.+...+ ++..+....... .++++|+||+|+.++.
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 133 RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 344333 233333322212 5899999999997653
No 51
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=1.6e-11 Score=117.12 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCC--CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADP--TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~--~~~rti~VltK 227 (728)
.+.||||||... ...+...|+..++++|+++...+.. +. ...++..+.+... .+.|+++|+||
T Consensus 52 ~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 52 TLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEECCSCSS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEECCCchh-------------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 479999999652 2346677889999666666544321 11 1122333333321 36899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 119 ~Dl~~~ 124 (172)
T 2erx_A 119 CDESPS 124 (172)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.19 E-value=1.9e-11 Score=116.23 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH---HHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA---LQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|++.+|++|+++... ....-.+. +..+......+.++++|+||+
T Consensus 53 ~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 118 (170)
T 1ek0_A 53 KFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVT-KPQSFIKARHWVKELHEQASKDIIIALVGNKI 118 (170)
T ss_dssp EEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETT-CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecC-ChHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 489999999542 2345678899999666665443 32222222 222333334578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 119 Dl~~~ 123 (170)
T 1ek0_A 119 DXLQE 123 (170)
T ss_dssp GGGGS
T ss_pred Ccccc
Confidence 99764
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.19 E-value=1.4e-11 Score=118.30 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||... ...++..|+..++++|+++...+.. +. ...++..+....+.+.++++|+||+|
T Consensus 64 ~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 64 RLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 489999999542 2345667889999666665443211 11 11222333333345789999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 131 l~~~ 134 (179)
T 2y8e_A 131 LSDK 134 (179)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9754
No 54
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.19 E-value=2e-11 Score=117.81 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|++.++++|+++. ++....-.. ++..+......+.++++|+||+
T Consensus 62 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 127 (181)
T 2efe_B 62 KFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVFD-VTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127 (181)
T ss_dssp EEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 589999999542 23456778999996666554 433222122 2233334334478899999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 128 Dl~~~~ 133 (181)
T 2efe_B 128 DLLDAR 133 (181)
T ss_dssp TCTTTC
T ss_pred cccccc
Confidence 997643
No 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=117.97 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=46.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc---HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT---SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...- ..++..++...+.+.++++|+||+
T Consensus 76 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~iilV~D~~~-~~s~~~~~~~~~~i~~~~~~~~piilV~NK~ 141 (192)
T 2il1_A 76 RLQIWDTAGQE-------------RFNSITSAYYRSAKGIILVYDITK-KETFDDLPKWMKMIDKYASEDAELLLVGNKL 141 (192)
T ss_dssp EEEEEEECCSG-------------GGHHHHHHHHHHCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 58999999954 234567889999996666654433 2211 223455666666789999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 142 Dl~~~ 146 (192)
T 2il1_A 142 DCETD 146 (192)
T ss_dssp GGGGG
T ss_pred ccccc
Confidence 99653
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.19 E-value=2.2e-11 Score=118.17 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=45.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....++..|+..++++|+++...+ ...-. .++..++.....+.++++|+||+
T Consensus 60 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (186)
T 2bme_A 60 KLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITS-RETYNALTNWLTDARMLASQNIVIILCGNKK 125 (186)
T ss_dssp EEEEEEECCSG-------------GGHHHHHTTSTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcH-------------HHHHHHHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 48999999954 234567889999996666665443 21111 22333455555678999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 126 Dl~~ 129 (186)
T 2bme_A 126 DLDA 129 (186)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9964
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.19 E-value=1.6e-11 Score=116.95 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.... ..++..|++.++++|+++...+... . ...++..+......+.++++|+||+|
T Consensus 53 ~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 53 KLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 4899999995422 2345678889996666554432211 1 12234444555555789999999999
Q ss_pred CC
Q 045702 230 IM 231 (728)
Q Consensus 230 ~~ 231 (728)
+.
T Consensus 120 l~ 121 (170)
T 1g16_A 120 ME 121 (170)
T ss_dssp CT
T ss_pred CC
Confidence 94
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.18 E-value=4.9e-11 Score=117.67 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=72.5
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
....++|+|+|..++|||||+|+|++..+ +.....++......
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~------------------------------------ 53 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK------------------------------------ 53 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEE------------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEE------------------------------------
Confidence 34567999999999999999999998875 22222222111110
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
.+.+.+ ....+.||||||... ...+...|+...+++|+++...+.+
T Consensus 54 --------------------~~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 99 (206)
T 2bov_A 54 --------------------KVVLDG-EEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEME 99 (206)
T ss_dssp --------------------EEEETT-EEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred --------------------EEEECC-EEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHH
Confidence 000100 011479999999542 2346678899999766666543321
Q ss_pred cccH---HHHH-HHHHhCCCCCceEEeeccCCCCCC
Q 045702 202 LATS---DALQ-MAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~---~~l~-l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.-. .++. +.+.....+.|+++|+||+|+.+.
T Consensus 100 -s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 100 -SFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp -HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred -HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 111 1222 223333457899999999999753
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=115.39 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=38.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHh-CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREA-DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~-d~~~~rti~VltK 227 (728)
.+.+|||||.... ....+...|+..++++|+++...+.. .-.. ++..+... ...+.|+++|+||
T Consensus 53 ~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 53 TLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 4789999996521 12345567888999776666544321 1111 12222222 2347899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 121 ~Dl~~~ 126 (175)
T 2nzj_A 121 ADLARC 126 (175)
T ss_dssp TTCTTT
T ss_pred hhhccc
Confidence 999754
No 60
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.18 E-value=3.2e-11 Score=117.71 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.... ..+...|+..++++|+++...+.. +. ...++..++.....+.++++|+||+|
T Consensus 72 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 72 KLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5899999996432 123467889999666665443321 11 11233344454445789999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 139 l~~~ 142 (189)
T 2gf9_A 139 LEDE 142 (189)
T ss_dssp CGGG
T ss_pred cccc
Confidence 9753
No 61
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.18 E-value=5.7e-11 Score=115.95 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=44.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHH-HHHHHHhhcCCeEEEEEecCCCCc--ccHHHHH-HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIR-KMIMAYIRQENCIILAVSPANSDL--ATSDALQ-MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~-~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~-l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.. ... .++..|++.++++|+++...+... ....++. +.+.....+.++++|+||
T Consensus 70 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 70 KIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 58999999943 233 677889999996666664433110 1112222 233333567899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 137 ~Dl~~~ 142 (189)
T 1z06_A 137 CDLRSA 142 (189)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 999754
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.18 E-value=2e-11 Score=120.58 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCC---CCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADP---TGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~---~~~rti~Vl 225 (728)
.+.||||||.. ....+...|+..+|++|+++...+ ...-.. ++..+....+ .+.++++|+
T Consensus 74 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 74 ELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFDVSS-MESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEETTC-HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEECCC-HHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 58999999964 445678889999996666664433 222122 2333344443 578999999
Q ss_pred ccCCCCC
Q 045702 226 TKLDIMD 232 (728)
Q Consensus 226 tK~D~~~ 232 (728)
||+|+.+
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999975
No 63
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.17 E-value=1.7e-10 Score=109.21 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=44.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|+..+|++|+++...+ .-.-......+..+ ...+.++++|+||
T Consensus 45 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (164)
T 1r8s_A 45 SFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSND-RERVNEAREELMRMLAEDELRDAVLLVFANK 110 (164)
T ss_dssp EEEEEECCCCG-------------GGHHHHHHHTTTCSEEEEEEETTC-GGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEEcCCCh-------------hhHHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHhchhhcCCeEEEEEEC
Confidence 58999999964 234567789999996666655433 22222222333332 2247899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 111 ~Dl~~~ 116 (164)
T 1r8s_A 111 QDLPNA 116 (164)
T ss_dssp TTSTTC
T ss_pred cCCcCC
Confidence 999764
No 64
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.17 E-value=3.3e-11 Score=124.46 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=45.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh--hcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI--RQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi--~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||..+.... .. -..+...|+ ..+|++|++ ++++.. ...+.+..++...+.|+++|+||+|
T Consensus 53 ~~~l~DtpG~~~~~~~----~~---~e~v~~~~~~~~~~d~ii~V-~D~t~~---~~~~~~~~~l~~~~~pvilv~NK~D 121 (258)
T 3a1s_A 53 TINLIDLPGTYSLGYS----SI---DEKIARDYLLKGDADLVILV-ADSVNP---EQSLYLLLEILEMEKKVILAMTAID 121 (258)
T ss_dssp EEEEEECCCCSSCCSS----SH---HHHHHHHHHHHSCCSEEEEE-EETTSC---HHHHHHHHHHHTTTCCEEEEEECHH
T ss_pred EEEEEECCCcCccCCC----CH---HHHHHHHHHhhcCCCEEEEE-eCCCch---hhHHHHHHHHHhcCCCEEEEEECcC
Confidence 5899999998754221 11 124556676 477855554 444432 2224566666666899999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 122 l~~ 124 (258)
T 3a1s_A 122 EAK 124 (258)
T ss_dssp HHH
T ss_pred CCC
Confidence 964
No 65
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.17 E-value=5.1e-11 Score=116.58 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.... ..+...|++.++++|+++...+... . ...++..+......+.++++|+||+|
T Consensus 71 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 71 KLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 5899999995422 2345678899996666665433211 1 11233344444455789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 138 l~~ 140 (191)
T 2a5j_A 138 LES 140 (191)
T ss_dssp CGG
T ss_pred cCC
Confidence 964
No 66
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.17 E-value=4e-11 Score=115.19 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=42.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhC----CCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREAD----PTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d----~~~~rti~V 224 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-. .++..+.... ..+.++++|
T Consensus 57 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 57 TMQIWDTAGQE-------------RFRSLRTPFYRGSDCCLLTFSVDD-SQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp EEEEEECCCCG-------------GGHHHHGGGGTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred EEEEEeCCCch-------------hhhhhHHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 48999999954 234567789999996666664433 21111 1222222222 256899999
Q ss_pred eccCCCCC
Q 045702 225 ITKLDIMD 232 (728)
Q Consensus 225 ltK~D~~~ 232 (728)
+||+|+..
T Consensus 123 ~nK~Dl~~ 130 (177)
T 1wms_A 123 GNKIDISE 130 (177)
T ss_dssp EECTTCSS
T ss_pred EECCcccc
Confidence 99999974
No 67
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.3e-10 Score=113.52 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHhhcccCCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 18 IGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 18 ~~~~l~~~~~~l~d~~~~~~g~~~~~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+.+-.+.+.+.+.+... ........++|+|+|..|||||||+|+|++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGG-SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp TTTBCHHHHHHHHHHC---------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhh-cCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345556666666666555 333345678999999999999999999999875
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=4.2e-11 Score=117.39 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|++.++++|+++...+ ...-. .++..++...+.+.++++|+||+
T Consensus 73 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 73 KFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITK-QDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp EEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTC-THHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 589999999542 23456678999996666665433 22212 23334445555678999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 139 Dl~~ 142 (192)
T 2fg5_A 139 DLSD 142 (192)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9975
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.16 E-value=8.1e-11 Score=114.72 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHh-CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREA-DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~-d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|+..++++|+++...+ ...-.+ ++..+... ...+.++++|+||
T Consensus 70 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK 135 (190)
T 3con_A 70 LLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINN-SKSFADINLYREQIKRVKDSDDVPMVLVGNK 135 (190)
T ss_dssp EEEEEECCC------------------------CTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHHTCSCCCEEEEEEC
T ss_pred EEEEEECCChH-------------HHHHHHHHhhCcCCEEEEEEECcC-HHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 48999999954 234566789999997666655433 222122 22223332 2347899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 136 ~Dl~~ 140 (190)
T 3con_A 136 CDLPT 140 (190)
T ss_dssp TTCSC
T ss_pred CcCCc
Confidence 99976
No 70
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.16 E-value=1.2e-10 Score=113.55 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=44.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-C---CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-D---PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|+..+|++|+++...+ .-.-......+..+ . ..+.++++|+||
T Consensus 68 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 68 TIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAAD-QEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp EEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTC-GGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCC-HHHHHHHHHHHHHHHhCcccCCCCEEEEEEC
Confidence 58999999953 345677889999996666665433 22222222333322 2 257899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 134 ~Dl~~~ 139 (188)
T 1zd9_A 134 RDLPGA 139 (188)
T ss_dssp TTSTTC
T ss_pred CCCccC
Confidence 999864
No 71
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.16 E-value=4.1e-11 Score=133.69 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=51.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||+.+.. ..++...-..+..++..+| ++++|++++......+ ..+++.+.. .++|+|+||+|+.
T Consensus 273 ~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~~~~~-~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 273 PVQVLDTAGIRETS-----DQVEKIGVERSRQAANTAD-LVLLTIDAATGWTTGD-QEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp EEEECC-------------------------CCCCSCS-EEEEEEETTTCSCHHH-HHHHHHHTT--SCEEEEEECTTSS
T ss_pred EEEEEECCccccch-----hHHHHHHHHHHhhhhhcCC-EEEEEeccCCCCCHHH-HHHHHhccC--CcEEEEEECCCCC
Confidence 47999999986421 0111111234566888899 5555555655555444 566666653 6999999999998
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
...... . .+.......++.++.....+++
T Consensus 344 ~~~~~~--~--~~~~~~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 344 EKQLIT--S--LEYPENITQIVHTAAAQKQGID 372 (462)
T ss_dssp CGGGST--T--CCCCTTCCCEEEEBTTTTBSHH
T ss_pred cchhhH--H--HHHhccCCcEEEEECCCCCCHH
Confidence 654321 1 1111123567888877665543
No 72
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.15 E-value=2.1e-10 Score=111.49 Aligned_cols=123 Identities=22% Similarity=0.378 Sum_probs=74.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
+++|+|+|..|+|||||+|+|+|..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 46899999999999999999999875 32221 111111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhc-CCe--EEEEEecCCC
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQ-ENC--IILAVSPANS 200 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~-~~~--iIL~V~~a~~ 200 (728)
..+.+. .+.+|||||+.... .-+....+.+..+...|+.. .+. +++.|+++..
T Consensus 39 -----------------~~~~~~-----~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s 94 (190)
T 2cxx_A 39 -----------------IEIEWK-----NHKIIDMPGFGFMM--GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKA 94 (190)
T ss_dssp -----------------EEEEET-----TEEEEECCCBSCCT--TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTH
T ss_pred -----------------EEEecC-----CEEEEECCCccccc--cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchh
Confidence 111111 58999999975432 12233345677788888876 553 3444454432
Q ss_pred Ccc-----------cHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 201 DLA-----------TSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 201 d~~-----------~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
... ..+ ..+.+.+...+.|+++|+||+|+....
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 95 APEIIKRWEKRGEIPID-VEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHHHHHHTTCCCHH-HHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred hhhHHHhhhccCccHHH-HHHHHHHHhcCCceEEEeehHhccCcH
Confidence 100 011 223444444578999999999998643
No 73
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.15 E-value=7.9e-11 Score=114.28 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHH-HHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQ-MAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~-l~~~~d~~~~rti~VltK 227 (728)
.+.||||||... ...+...|+..++++|+++...+. ..-.. ++. +.+.....+.|+++|+||
T Consensus 53 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK 118 (189)
T 4dsu_A 53 LLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNT-KSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118 (189)
T ss_dssp EEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 478999999542 334566789999966666654432 11111 222 223334457899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 119 ~Dl~~~ 124 (189)
T 4dsu_A 119 CDLPSR 124 (189)
T ss_dssp TTSSSC
T ss_pred ccCccc
Confidence 999753
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.15 E-value=3.3e-11 Score=113.84 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=42.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHH-hCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMARE-ADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~-~d~~~~rti~VltK 227 (728)
.+.+|||||.... ..+...|+..++++|+++...+ ...-.. ++..+.. ....+.|+++|+||
T Consensus 52 ~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK 117 (166)
T 2ce2_X 52 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINN-TKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117 (166)
T ss_dssp EEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTC-HHHHHHHHHHHHHHHHHHTCSCCCEEEEEEC
T ss_pred EEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 4789999996522 2356678899997666665432 211112 2222222 23347899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 118 ~Dl~~~ 123 (166)
T 2ce2_X 118 SDLAAR 123 (166)
T ss_dssp TTCSCC
T ss_pred hhhhhc
Confidence 999863
No 75
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.15 E-value=1.9e-11 Score=136.87 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=39.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.++||||||+.+.. ..++...-..+..|+..+|.+| +|++++...... ....+++.+. +.++|+|+||+
T Consensus 282 ~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~vl-~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~ 353 (476)
T 3gee_A 282 MFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEADLIL-YLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKL 353 (476)
T ss_dssp EEEEEC-------------------------CCCSSCSEEE-EEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECT
T ss_pred EEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCCEEE-EEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECc
Confidence 48999999986421 0111111234567889999554 455554444331 3356677665 68999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 354 Dl~~~~ 359 (476)
T 3gee_A 354 DRAANA 359 (476)
T ss_dssp TSCTTT
T ss_pred CCCCcc
Confidence 998654
No 76
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.15 E-value=1.2e-10 Score=110.95 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-C---CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-D---PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~VltK 227 (728)
.+.+|||||... ...+...|++.+|++|+++...+ ...-......+..+ . ..+.|+++|+||
T Consensus 52 ~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 117 (171)
T 1upt_A 52 KFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIYVVDSCD-RDRIGISKSELVAMLEEEELRKAILVVFANK 117 (171)
T ss_dssp EEEEEEECCCGG-------------GGGGGGGGCTTCSEEEEEEETTC-CTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHhchhhCCCEEEEEEEC
Confidence 589999999652 23455678899996666655433 22222222222222 2 257899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 118 ~Dl~~~~ 124 (171)
T 1upt_A 118 QDMEQAM 124 (171)
T ss_dssp TTSTTCC
T ss_pred CCCcCCC
Confidence 9998653
No 77
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.15 E-value=5.5e-11 Score=116.13 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHH----HHHhCC--CCCceEEee
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQM----AREADP--TGSRTIGVI 225 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l----~~~~d~--~~~rti~Vl 225 (728)
.+.||||||... ...+...|+..+|++|+++. ++....-...... .+.... .+.++++|+
T Consensus 68 ~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 68 SFTVFDMSGQGR-------------YRNLWEHYYKEGQAIIFVID-SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp EEEEEEECCSTT-------------TGGGGGGGGGGCSEEEEEEE-TTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred EEEEEECCCCHH-------------HHHHHHHHHhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 589999999542 22445678999996666554 4332111121122 222221 478999999
Q ss_pred ccCCCCCC
Q 045702 226 TKLDIMDR 233 (728)
Q Consensus 226 tK~D~~~~ 233 (728)
||+|+.+.
T Consensus 134 nK~Dl~~~ 141 (190)
T 2h57_A 134 NKMDLRDA 141 (190)
T ss_dssp ECTTSTTC
T ss_pred eCcCcccC
Confidence 99999764
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.14 E-value=9.8e-11 Score=114.83 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=70.1
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHH
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQE 121 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~ 121 (728)
....++|+|+|..++|||||+++|++..+.......++. ....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~------------------------------------ 56 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVE------------------------------------ 56 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEE------------------------------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEE------------------------------------
Confidence 345678999999999999999999998863211111111 0000
Q ss_pred HHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC
Q 045702 122 IMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201 (728)
Q Consensus 122 i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d 201 (728)
. +.. ....+.||||||... ...+...|++.+|++|+++...+ .
T Consensus 57 --------------------~--~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~-~ 99 (199)
T 4bas_A 57 --------------------T--FEK-GRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFVVDSSD-H 99 (199)
T ss_dssp --------------------E--EEE-TTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEETTC-G
T ss_pred --------------------E--EEe-CCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCc-H
Confidence 0 000 112589999999752 23456678999996666665443 2
Q ss_pred cccHHHHHHHHHhCC-----------CCCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADP-----------TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~-----------~~~rti~VltK~D~~~~ 233 (728)
..-......+..+.. .+.++|+|+||+|+...
T Consensus 100 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 100 LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 222222233333322 27899999999999865
No 79
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=121.43 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=41.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+ .-.-.....+...+ ...+.++++|+||
T Consensus 73 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 138 (201)
T 3oes_A 73 HLHLVDTAGQDEY-------------SILPYSFIIGVHGYVLVYSVTS-LHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138 (201)
T ss_dssp EEEEEEECCCCTT-------------CCCCGGGTTTCCEEEEEEETTC-HHHHHHHHHHHHHHHC-----CCCEEEEEEC
T ss_pred EEEEEECCCccch-------------HHHHHHHHhcCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4799999996532 1234568899996666665443 21112222333333 2346899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 139 ~Dl~~~ 144 (201)
T 3oes_A 139 ADLSPE 144 (201)
T ss_dssp TTCGGG
T ss_pred ccCccc
Confidence 999754
No 80
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.14 E-value=7.4e-11 Score=122.96 Aligned_cols=122 Identities=22% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
-+.|+|+|.+|+|||||+|+|+|..+ .++.-+ +|.-+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~-------------------------------------- 43 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEG-------------------------------------- 43 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEE--------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEE--------------------------------------
Confidence 35899999999999999999999874 333221 12211111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh--hcCCeEEEEEecCCCC
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI--RQENCIILAVSPANSD 201 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi--~~~~~iIL~V~~a~~d 201 (728)
.+...+ ..+.||||||+.+.......... ...++..|+ ..+|.+|+++... ..
T Consensus 44 --------------------~~~~~~-~~~~liDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~ii~VvD~~-~~ 98 (274)
T 3i8s_A 44 --------------------QFSTTD-HQVTLVDLPGTYSLTTISSQTSL---DEQIACHYILSGDADLLINVVDAS-NL 98 (274)
T ss_dssp --------------------EEECSS-CEEEEEECCCCSCSCC----CCH---HHHHHHHHHHHTCCSEEEEEEEGG-GH
T ss_pred --------------------EEEeCC-CceEEEECcCCCccccccccCCH---HHHHHHHHHhhcCCCEEEEEecCC-Ch
Confidence 111111 24789999998765321111122 223455665 6888655555443 31
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
...+.+..++...+.|+++|+||+|+...
T Consensus 99 ---~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 99 ---ERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp ---HHHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred ---HHHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 12244444444457899999999999753
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.14 E-value=1.4e-11 Score=117.09 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=41.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...-.. ++..+.... .+.++++|+||+
T Consensus 55 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~-~~~piilv~nK~ 119 (168)
T 1z2a_A 55 RLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTD-RESFEAISSWREKVVAEV-GDIPTALVQNKI 119 (168)
T ss_dssp EEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTC-HHHHHTHHHHHHHHHHHH-CSCCEEEEEECG
T ss_pred EEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 5899999995422 2345678899996666665433 211111 222222222 368999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 120 Dl~~~ 124 (168)
T 1z2a_A 120 DLLDD 124 (168)
T ss_dssp GGGGG
T ss_pred ccCcc
Confidence 99753
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.14 E-value=1.6e-10 Score=112.13 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.+|||||.. ....+...|++.+|++|+++. ++....-.+....+..+ ...+.++++|+||
T Consensus 63 ~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (186)
T 1ksh_A 63 KLNIWDVGGQK-------------SLRSYWRNYFESTDGLIWVVD-SADRQRMQDCQRELQSLLVEERLAGATLLIFANK 128 (186)
T ss_dssp EEEEEEECCSH-------------HHHTTGGGGCTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeC
Confidence 58999999964 344566788999996666554 43332222222333332 2247899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 129 ~Dl~~~~ 135 (186)
T 1ksh_A 129 QDLPGAL 135 (186)
T ss_dssp TTSTTCC
T ss_pred ccCCCCC
Confidence 9997653
No 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.13 E-value=5.5e-11 Score=114.53 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=36.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHh----CCCCCceEEe
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREA----DPTGSRTIGV 224 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~----d~~~~rti~V 224 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-.. ++..+... ...+.|+++|
T Consensus 59 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 124 (182)
T 1ky3_A 59 TMQVWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTN-ASSFENIKSWRDEFLVHANVNSPETFPFVIL 124 (182)
T ss_dssp EEEEECCC-----------------------CCSTTCCEEEEEEETTC-HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEE
T ss_pred EEEEEECCCCh-------------HhhhhhHHHhhcCCEEEEEEECCC-hHHHHHHHHHHHHHHHHhcccCcCCCcEEEE
Confidence 58999999943 344566788999997666664433 211111 12222222 2257899999
Q ss_pred eccCCCCC
Q 045702 225 ITKLDIMD 232 (728)
Q Consensus 225 ltK~D~~~ 232 (728)
+||+|+..
T Consensus 125 ~nK~Dl~~ 132 (182)
T 1ky3_A 125 GNKIDAEE 132 (182)
T ss_dssp EECTTSCG
T ss_pred EECCcccc
Confidence 99999964
No 84
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.13 E-value=6.4e-11 Score=112.56 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|++.++++|+++...+ ...-.. ++..+........++++|+||+
T Consensus 56 ~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 56 KFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYDITN-EESFARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 489999999542 23456778999996666665433 211122 2222333334468899999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 122 Dl~~~ 126 (170)
T 1r2q_A 122 DLANK 126 (170)
T ss_dssp GGGGG
T ss_pred cCccc
Confidence 99653
No 85
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.13 E-value=6.8e-11 Score=114.45 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHH-HHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDAL-QMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l-~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... ...+...|++.+|++|+++...+.. +. -..++ .+.+.....+.++++|+||+
T Consensus 67 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 133 (183)
T 3kkq_A 67 ILDVLDTAGQEE-------------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133 (183)
T ss_dssp EEEEEECCSCGG-------------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECT
T ss_pred EEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECC
Confidence 367899999542 2234567889999766666544311 00 11122 23334455678999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 134 Dl~~~ 138 (183)
T 3kkq_A 134 DLMHL 138 (183)
T ss_dssp TCSTT
T ss_pred Cchhc
Confidence 99753
No 86
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.13 E-value=4.1e-11 Score=119.77 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=56.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..+|++|+++...+ ...-. .++..+....+.+.++++|+||+
T Consensus 62 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 62 KFNVWDTAGQEKK-------------AVLKDVYYIGASGAILFFDVTS-RITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEecCCchhh-------------chHHHHHhhcCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 4899999996532 1234567888996666654433 22211 23345555555678999999999
Q ss_pred CCCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 229 DIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 229 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
|+.+......+............|+.+++....++.
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 998653322211111112234567888777665543
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=5.3e-11 Score=118.01 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=46.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.. .+..+...|++.++++|+++...+..- . -..++..++.....+.++++|+||+|
T Consensus 76 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 142 (201)
T 2ew1_A 76 KLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142 (201)
T ss_dssp EEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 48999999953 344677889999996666665433211 0 12334455555566789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 143 l~~ 145 (201)
T 2ew1_A 143 LAE 145 (201)
T ss_dssp GGG
T ss_pred Ccc
Confidence 964
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.13 E-value=5.6e-11 Score=117.41 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=43.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH---HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS---DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....++..|++.++++|+++...+ ...-. .++..+......+.++++|+||+
T Consensus 75 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 140 (200)
T 2o52_A 75 KLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITS-RETYNSLAAWLTDARTLASPNIVVILCGNKK 140 (200)
T ss_dssp EEEEECCTTHH-------------HHSCCCHHHHTTCSEEEEEEETTC-HHHHHTHHHHHHHHHHHTCTTCEEEEEEECG
T ss_pred EEEEEcCCCcH-------------hHHHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 58999999943 334556788999996666665433 21111 22333444444578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 141 Dl~~ 144 (200)
T 2o52_A 141 DLDP 144 (200)
T ss_dssp GGGG
T ss_pred Cccc
Confidence 9964
No 89
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.12 E-value=6.5e-11 Score=117.19 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...-.. ++..+......+.++++|+||+
T Consensus 58 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (206)
T 2bcg_Y 58 KLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTD-QESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123 (206)
T ss_dssp EEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 5899999996432 2234568899996666554433 222122 2333444445578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 124 Dl~~~ 128 (206)
T 2bcg_Y 124 DLKDK 128 (206)
T ss_dssp TCTTT
T ss_pred CCccc
Confidence 99764
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=2.7e-10 Score=110.87 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=42.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.||||||... ...+...|++.+|++|+++...+.+ .-......+..+. ..+.++++|+||
T Consensus 61 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 61 RFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp EEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred EEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhchhhCCCeEEEEEEC
Confidence 589999999642 2345677899999666666544322 2222233333332 257899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 127 ~Dl~~~ 132 (187)
T 1zj6_A 127 QDVKEC 132 (187)
T ss_dssp TTSTTC
T ss_pred CCCcCC
Confidence 999864
No 91
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.12 E-value=8.6e-11 Score=122.23 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=70.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
.++|+++|.+|+|||||+|+|+|..+ .++.- .+|.-+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~--------------------------------------- 42 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKS--------------------------------------- 42 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEE---------------------------------------
Confidence 35899999999999999999999764 22211 11211111
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCC
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSD 201 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d 201 (728)
..+.. ...+.||||||..+.... . .-+.+...|+. .+|.+|+++ +++..
T Consensus 43 -------------------~~~~~--~~~l~l~DtpG~~~~~~~----~---~~e~v~~~~~~~~~~d~vi~V~-D~t~~ 93 (272)
T 3b1v_A 43 -------------------GLVKK--NKDLEIQDLPGIYSMSPY----S---PEAKVARDYLLSQRADSILNVV-DATNL 93 (272)
T ss_dssp -------------------EECTT--CTTEEEEECCCCSCSSCS----S---HHHHHHHHHHHTTCCSEEEEEE-EGGGH
T ss_pred -------------------EEEec--CCeEEEEECCCcCccCCC----C---hHHHHHHHHHhcCCCCEEEEEe-cCCch
Confidence 11111 125899999998754221 1 12345677776 588555555 44321
Q ss_pred cccHHHHHHHHHhCCCCCceEEeeccCCCCC
Q 045702 202 LATSDALQMAREADPTGSRTIGVITKLDIMD 232 (728)
Q Consensus 202 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~ 232 (728)
...+.+..++...+.|+++|+||+|+..
T Consensus 94 ---e~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 94 ---ERNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp ---HHHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred ---HhHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 1223444455446899999999999864
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.12 E-value=3.9e-11 Score=114.38 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=38.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHH-HHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQ-MAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~-l~~~~d~~~~rti~VltK~ 228 (728)
.+.++||||.... ...+...|++.++++|+++...+.. +. ...++. +.+.....+.|+++|+||+
T Consensus 52 ~~~i~D~~g~~~~------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 52 TLIVYDIWEQGDA------------GGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEECCCcccc------------chhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 4789999997522 1124455788899666666544311 11 111222 2222333478999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 120 Dl~~ 123 (169)
T 3q85_A 120 DLAR 123 (169)
T ss_dssp TCGG
T ss_pred chhh
Confidence 9974
No 93
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.12 E-value=5.2e-10 Score=107.77 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=45.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
.+.+|||||+.... ..........+..|+..++.+|+++...+.. .....++..+....+.+.|+++|+||+|+
T Consensus 53 ~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 127 (172)
T 2gj8_A 53 PLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 127 (172)
T ss_dssp EEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred EEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccC
Confidence 37899999986431 1122111122446789999666655443322 22223344445555557899999999999
Q ss_pred CC
Q 045702 231 MD 232 (728)
Q Consensus 231 ~~ 232 (728)
.+
T Consensus 128 ~~ 129 (172)
T 2gj8_A 128 TG 129 (172)
T ss_dssp HC
T ss_pred Cc
Confidence 64
No 94
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.11 E-value=4.4e-11 Score=115.60 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=40.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH----HHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL----QMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l----~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+.+ .-.... .+.+.....+.++++|+||
T Consensus 55 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 120 (181)
T 3t5g_A 55 HLQLVDTAGQDEY-------------SIFPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120 (181)
T ss_dssp EEEEEECCCCCTT-------------CCCCGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEEC
T ss_pred EEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4789999997533 123446788899666666544311 111111 2334444457899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 121 ~Dl~~~~ 127 (181)
T 3t5g_A 121 KDLHMER 127 (181)
T ss_dssp TTCTTTC
T ss_pred ccchhcc
Confidence 9997543
No 95
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=115.50 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=45.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.||||||.. ....+...|++.++++|+++...+.. +. ...++..++.....+.++++|+||+|
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 79 KLQIWDTAGQE-------------RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEECCTTCG-------------GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 58999999954 23457788999999766666543211 11 11233344444445789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 146 l~~ 148 (201)
T 2hup_A 146 LSE 148 (201)
T ss_dssp CGG
T ss_pred ccc
Confidence 975
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=9.3e-11 Score=115.57 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc---HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT---SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....++..|++.+|++|+++...+ ...- ..++..++.....+.++++|+||+
T Consensus 78 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 143 (199)
T 2p5s_A 78 VLQLWDTAGQE-------------RFRSIAKSYFRKADGVLLLYDVTC-EKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143 (199)
T ss_dssp EEEEEECTTCT-------------TCHHHHHHHHHHCSEEEEEEETTC-HHHHHTHHHHHHHHHHHC---CCEEEEEECG
T ss_pred EEEEEECCCCc-------------chhhhHHHHHhhCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 48999999954 233567789999996666665433 2111 123444555555578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 144 Dl~~ 147 (199)
T 2p5s_A 144 DIRD 147 (199)
T ss_dssp GGHH
T ss_pred cccc
Confidence 9963
No 97
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.11 E-value=6.3e-11 Score=114.68 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=36.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-.. ++..+......+.++++|+||+
T Consensus 58 ~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (183)
T 2fu5_C 58 KLQIWDTAGQE-------------RFRTITTAYYRGAMGIMLVYDITN-EKSFDNIRNWIRNIEEHASADVEKMILGNKC 123 (183)
T ss_dssp EEEEEEC----------------------CCTTTTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred EEEEEcCCCCh-------------hhhhhHHHHHhcCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 58999999954 233456678999996666665433 211112 2233334434578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 124 Dl~~~ 128 (183)
T 2fu5_C 124 DVNDK 128 (183)
T ss_dssp -CCSC
T ss_pred cCCcc
Confidence 99753
No 98
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.10 E-value=3.1e-10 Score=117.38 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
.-.+|+|+|..++|||||+|+|+|..+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~ 62 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVV 62 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 3468999999999999999999998753
No 99
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.10 E-value=3.3e-11 Score=115.91 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+|+|+|.+++|||||+|+|++..+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 45899999999999999999998765
No 100
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=8.7e-11 Score=114.70 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|++.++++|+++. ++....-.....++..+. ..+.++++|+||
T Consensus 65 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK 130 (195)
T 1x3s_A 65 KLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYD-VTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 130 (195)
T ss_dssp EEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEE-TTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEEC
T ss_pred EEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEC
Confidence 5899999996422 2345678899996666554 433222222223334443 246889999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 131 ~Dl~~ 135 (195)
T 1x3s_A 131 IDKEN 135 (195)
T ss_dssp TTSSS
T ss_pred CcCcc
Confidence 99954
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.10 E-value=4.6e-10 Score=111.70 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
..++|+|+|+.++|||||+++|++..+.+... +|... ..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~-~~-------------------------------------- 44 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS-SA-------------------------------------- 44 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-EE--------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-eE--------------------------------------
Confidence 35789999999999999999999887522211 11100 00
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHH-HHHHHhhcCCeEEEEEecCCCCc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRK-MIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~-~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.+.+.....+.||||||.. .... ++..|++.++++|+++...+..-
T Consensus 45 ------------------~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 93 (214)
T 2fh5_B 45 ------------------IYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARAVVFVVDSAAFQR 93 (214)
T ss_dssp ------------------EEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEEEEEEEETTTHHH
T ss_pred ------------------EEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCEEEEEEECCCcCH
Confidence 011111111258999999964 2333 77889999996666665432110
Q ss_pred ccHHHHHHHHH------hCCCCCceEEeeccCCCCCCCc
Q 045702 203 ATSDALQMARE------ADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 203 ~~~~~l~l~~~------~d~~~~rti~VltK~D~~~~~~ 235 (728)
........+.. ....+.|+++|+||+|+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 94 EVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 11122222221 2344689999999999986543
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.09 E-value=1.7e-10 Score=111.77 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh-C---CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA-D---PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~-d---~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..+|++|+++...+ ...-......+..+ . ..+.++++|+||
T Consensus 66 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 66 RFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTD-RERISVTREELYKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp EEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTC-TTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHhChhhCCCeEEEEEEC
Confidence 5899999997532 2345678999996666555443 32222323333332 2 357899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 132 ~Dl~~~ 137 (181)
T 2h17_A 132 QDVKEC 137 (181)
T ss_dssp TTSTTC
T ss_pred CCcccC
Confidence 999764
No 103
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.09 E-value=6.5e-11 Score=117.00 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=24.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFL 71 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~l 71 (728)
..+|+|+|..++|||||+|+|++..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 458999999999999999999998763
No 104
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.09 E-value=6e-11 Score=123.37 Aligned_cols=118 Identities=23% Similarity=0.251 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..++|+++|.+|||||||+|+|+|..+ +.+.-+ +|.-...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~-------------------------------------- 42 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKE-------------------------------------- 42 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeE--------------------------------------
Confidence 356899999999999999999999875 433211 1111100
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh--hcCCeEEEEEecCCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI--RQENCIILAVSPANS 200 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi--~~~~~iIL~V~~a~~ 200 (728)
..+.+.+ ..+.||||||+.+.... . ....++..|+ ..+|++|+++ +++.
T Consensus 43 ------------------~~~~~~~---~~~~l~DtpG~~~~~~~----~---~~~~~~~~~~~~~~~d~vi~v~-D~~~ 93 (271)
T 3k53_A 43 ------------------GIMEYRE---KEFLVVDLPGIYSLTAH----S---IDELIARNFILDGNADVIVDIV-DSTC 93 (271)
T ss_dssp ------------------EEEEETT---EEEEEEECCCCSCCCSS----C---HHHHHHHHHHHTTCCSEEEEEE-EGGG
T ss_pred ------------------EEEEECC---ceEEEEeCCCccccccC----C---HHHHHHHHhhhccCCcEEEEEe-cCCc
Confidence 0111111 13799999998754221 1 1123556677 6788555555 4433
Q ss_pred CcccHHHHHHHHHhCCCC-CceEEeeccCCCCC
Q 045702 201 DLATSDALQMAREADPTG-SRTIGVITKLDIMD 232 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~ 232 (728)
. ...+.+..++...+ .|+++|+||+|+..
T Consensus 94 ~---~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 94 L---MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp H---HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred c---hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 2 12244444444445 89999999999864
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.07 E-value=4.7e-10 Score=110.06 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=40.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.||||||... ...+...|++.+|++|+++... ....-......+..+ ...+.++++|+||
T Consensus 74 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~-~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 139 (192)
T 2b6h_A 74 CFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSN-DRERVQESADELQKMLQEDELRDAVLLVFANK 139 (192)
T ss_dssp EEEEEECC------------------CTTHHHHHHTCCEEEEEEETT-CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECC-CHHHHHHHHHHHHHHhcccccCCCeEEEEEEC
Confidence 589999999642 2345677899999666665443 332222222333332 2247899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 140 ~Dl~~~ 145 (192)
T 2b6h_A 140 QDMPNA 145 (192)
T ss_dssp TTSTTC
T ss_pred CCCCCC
Confidence 999764
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.06 E-value=6.9e-10 Score=105.89 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||....... . ..+.+...|+. .++.+++ |.++.. . .....++.++...+.++++|.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~-v~D~~~-~--~~~~~~~~~~~~~~~p~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVN-IVDATA-L--ERNLYLTLQLMEMGANLLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEE-EEETTC-H--HHHHHHHHHHHHTTCCEEEEEECHH
T ss_pred EEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEE-EecCCc-h--hHhHHHHHHHHhcCCCEEEEEEchH
Confidence 5899999998653211 1 22345566775 7885554 444432 1 1123344444334789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 120 l~~ 122 (165)
T 2wji_A 120 LAK 122 (165)
T ss_dssp HHH
T ss_pred hcc
Confidence 853
No 107
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.06 E-value=1.5e-10 Score=127.52 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCc-ccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDI-CTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~-~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..+.|+|+|..++|||||+|+|+|..+.+.+... +|.-+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~---------------------------------------- 72 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDP---------------------------------------- 72 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCC----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeee----------------------------------------
Confidence 4678999999999999999999998763322111 11111
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
....+.......+.||||||+.....-++ .....+..|+..+|.+|+++ ++ ..
T Consensus 73 ------------------~~~~~~~~~~~~l~liDTpG~~d~~~l~~------~~~~~~~~~l~~aD~vllVv-D~--~~ 125 (423)
T 3qq5_A 73 ------------------VYKSMELHPIGPVTLVDTPGLDDVGELGR------LRVEKARRVFYRADCGILVT-DS--AP 125 (423)
T ss_dssp ------------------CEEEEEETTTEEEEEEECSSTTCCCTTCC------CCHHHHHHHHTSCSEEEEEC-SS--SC
T ss_pred ------------------EEEEEEECCCCeEEEEECcCCCcccchhH------HHHHHHHHHHhcCCEEEEEE-eC--CC
Confidence 01111111112589999999875422111 11123567889999555555 55 23
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
..++ ..+++.+...+.++|+|+||+|+.+..... ....-...++..|+.+++....+++
T Consensus 126 ~~~~-~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~--~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 126 TPYE-DDVVNLFKEMEIPFVVVVNKIDVLGEKAEE--LKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp CHHH-HHHHHHHHHTTCCEEEECCCCTTTTCCCTH--HHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred hHHH-HHHHHHHHhcCCCEEEEEeCcCCCCccHHH--HHHHHHHHcCCCEEEEECCCCCCHH
Confidence 3332 444454444478999999999998765541 1111122334577778777665544
No 108
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.06 E-value=2.2e-10 Score=110.71 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=40.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC----CCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD----PTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d----~~~~rti~VltK 227 (728)
.+.+|||||.... ..+...|+..+|++|+++. ++....-......+..+. ..+.|+++|+||
T Consensus 63 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (183)
T 1moz_A 63 KLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVD-STDKDRMSTASKELHLMLQEEELQDAALLVFANK 128 (183)
T ss_dssp EEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEE-TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred EEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEEC
Confidence 5899999997532 2234568888996655554 433322233333344332 357899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 129 ~Dl~~~ 134 (183)
T 1moz_A 129 QDQPGA 134 (183)
T ss_dssp TTSTTC
T ss_pred CCCCCC
Confidence 999764
No 109
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.06 E-value=5.6e-10 Score=109.71 Aligned_cols=120 Identities=20% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
-...+|+|+|+.++|||||++.|+|.. .+. . |..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~-~---~~~----------------------------------------- 51 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKM-SPN-E---TLF----------------------------------------- 51 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCC-CGG-G---GGG-----------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcC-CCc-c---eee-----------------------------------------
Confidence 346789999999999999999999853 222 0 000
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHH---HHHhhcCCeEEEEEecCC
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMI---MAYIRQENCIILAVSPAN 199 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~---~~yi~~~~~iIL~V~~a~ 199 (728)
..+....+...+.+.....+.||||||.... ..+. ..|++.++++|+++...+
T Consensus 52 -----------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~v~d~~~ 107 (196)
T 3llu_A 52 -----------LESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIYVIDAQD 107 (196)
T ss_dssp -----------CCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEEEEETTS
T ss_pred -----------eccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEEEEECCC
Confidence 0011111222232222336899999996432 1122 578899997666665443
Q ss_pred CCccc--HHHHHHHHHh--CCCCCceEEeeccCCCCCC
Q 045702 200 SDLAT--SDALQMAREA--DPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 200 ~d~~~--~~~l~l~~~~--d~~~~rti~VltK~D~~~~ 233 (728)
.... ..+..++..+ ...+.++++|.||+|+.+.
T Consensus 108 -~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 108 -DYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred -chHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 3211 1223344443 2347899999999999864
No 110
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=1.9e-10 Score=112.92 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc-HHHHHHHHH-hCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT-SDALQMARE-ADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l~~~-~d~~~~rti~VltK~ 228 (728)
.+.||||||... ..+...|+..++++|+++...+.+ +.. ..++..+.. ....+.|+++|+||+
T Consensus 77 ~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 77 SMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 478999999763 245677899999766666543311 111 112232333 334578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 143 Dl~~ 146 (196)
T 2atv_A 143 DLDH 146 (196)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9975
No 111
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.05 E-value=7.3e-09 Score=112.02 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=25.3
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
...+.|+|+|.+|+|||||+|+|+|..+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999999763
No 112
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.05 E-value=9.7e-10 Score=106.62 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=44.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.+|||||.. .++.+...|+..++++|+++...+ .-.-......+..+ ...+.|+++|+||
T Consensus 61 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (181)
T 1fzq_A 61 KLNVWDIGGQR-------------KIRPYWRSYFENTDILIYVIDSAD-RKRFEETGQELTELLEEEKLSCVPVLIFANK 126 (181)
T ss_dssp EEEEEECSSCG-------------GGHHHHHHHHTTCSEEEEEEETTC-GGGHHHHHHHHHHHTTCGGGTTCCEEEEEEC
T ss_pred EEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECcC-HHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 58999999954 234567789999997666665433 22222222233332 2357899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 127 ~Dl~~~~ 133 (181)
T 1fzq_A 127 QDLLTAA 133 (181)
T ss_dssp TTSTTCC
T ss_pred cCcccCC
Confidence 9998653
No 113
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.05 E-value=8e-11 Score=126.29 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+|.|+|||.+|||||||||+|++......+...+|..|+.-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 678999999999999999999987531111222344333211
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC---CC
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN---SD 201 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~---~d 201 (728)
+..++...++|+||||+...+.... . +.....+++..++.+|+++..++ .+
T Consensus 200 --------------------v~~~~~~~~~l~DtPG~i~~a~~~~--~----l~~~fl~~i~~~d~ll~VvD~s~~~~~~ 253 (342)
T 1lnz_A 200 --------------------VETDDGRSFVMADLPGLIEGAHQGV--G----LGHQFLRHIERTRVIVHVIDMSGLEGRD 253 (342)
T ss_dssp --------------------EECSSSCEEEEEEHHHHHHHTTCTT--T----THHHHHHHHHHCCEEEEEEESSCSSCCC
T ss_pred --------------------EEeCCCceEEEecCCCCcccccccc--h----hHHHHHHHHHhccEEEEEEECCcccccC
Confidence 1111112589999999875322211 1 11223455677996666665443 12
Q ss_pred c-cc-HHHHHHHHHhCC--CCCceEEeeccCCCCCC
Q 045702 202 L-AT-SDALQMAREADP--TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 202 ~-~~-~~~l~l~~~~d~--~~~rti~VltK~D~~~~ 233 (728)
. .. ..+...++.+.+ ...|.++|+||+|+...
T Consensus 254 ~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 254 PYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp HHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 1 11 112334445543 47899999999999753
No 114
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.04 E-value=1.8e-09 Score=120.23 Aligned_cols=129 Identities=21% Similarity=0.301 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCC-cccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCD-ICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~-~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
..++|++||++|||||||+|+|+|..+..++.- .+|+-|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~------------------------------------- 221 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDD------------------------------------- 221 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCE-------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEE-------------------------------------
Confidence 467999999999999999999999875222211 122222110
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.+.+ ..+.+|||||+.+..... +...+......+..++..++.++ +|.++....
T Consensus 222 -------------------~i~~~g---~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vl-lv~d~~~~~ 277 (439)
T 1mky_A 222 -------------------EVFIDG---RKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVV-IVLDATQGI 277 (439)
T ss_dssp -------------------EEEETT---EEEEESSCSCC------------CCSCCHHHHHHHHHCSEEE-EEEETTTCC
T ss_pred -------------------EEEECC---EEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEE-EEEeCCCCC
Confidence 112221 147899999985321110 00000000112356888899554 555555555
Q ss_pred ccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 203 ATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 203 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
..++ ..++..+...+.++++|+||+|+.+..
T Consensus 278 ~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 278 TRQD-QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp CHHH-HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred CHHH-HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 5444 455555555689999999999998643
No 115
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.1e-10 Score=122.67 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
..++|++||.+|+|||||+|+|+|........-.||+-|..-.+... +
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~------------------~-------------- 118 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK------------------G-------------- 118 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET------------------T--------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC------------------C--------------
Confidence 35799999999999999999999987544445568887765432110 0
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
..++|+||||+...+..+. .....+...++.+| +|++|++++.++.
T Consensus 119 ---------------------------~~i~l~D~pGl~~~a~~~~------~~g~~~l~~i~~ad-~il~vvD~~~p~~ 164 (376)
T 4a9a_A 119 ---------------------------AKIQMLDLPGIIDGAKDGR------GRGKQVIAVARTCN-LLFIILDVNKPLH 164 (376)
T ss_dssp ---------------------------EEEEEEECGGGCCC-----------CHHHHHHHHHHHCS-EEEEEEETTSHHH
T ss_pred ---------------------------cEEEEEeCCCccCCchhhh------HHHHHHHHHHHhcC-ccccccccCccHH
Confidence 1478999999986643221 22344567788999 6666777765443
Q ss_pred cHHHH-HHHHHhCC--CCCceEEeeccCCCC
Q 045702 204 TSDAL-QMAREADP--TGSRTIGVITKLDIM 231 (728)
Q Consensus 204 ~~~~l-~l~~~~d~--~~~rti~VltK~D~~ 231 (728)
..+.+ .-+..++. ...|.++|+||.|.-
T Consensus 165 ~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 165 HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 32211 11222222 356889999999974
No 116
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=1.2e-10 Score=114.08 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCC--CCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADP--TGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~--~~~rti~VltK 227 (728)
.+.||||||... ...+...|+..++++|+++...+.. +. ...++..+..+.. .+.++++|+||
T Consensus 57 ~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 57 TLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 489999999542 2356677889999666666543311 11 1122333444322 36799999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 124 ~Dl~~~ 129 (199)
T 2gf0_A 124 CDETQR 129 (199)
T ss_dssp TTCSSC
T ss_pred ccCCcc
Confidence 999763
No 117
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=1.7e-09 Score=107.85 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 42 KISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 42 ~~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.-..+.|+|+|..++|||||+++|++..+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999999999875
No 118
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-10 Score=117.45 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=41.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|++.++++|+++ +++....-.+ ++..++.....+.++++|+||+
T Consensus 63 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~ 128 (223)
T 3cpj_B 63 KAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128 (223)
T ss_dssp EEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCG
T ss_pred EEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 5899999996422 234567889999666555 4433222222 2333444445578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 129 Dl~~ 132 (223)
T 3cpj_B 129 DLAH 132 (223)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9975
No 119
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.01 E-value=6.9e-10 Score=108.26 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=43.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc--cHH----HHHHHHHh--CCCCCceEE
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA--TSD----ALQMAREA--DPTGSRTIG 223 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~--~~~----~l~l~~~~--d~~~~rti~ 223 (728)
.+.||||||... +..+...|++.++++|+++... .... +.+ ...++.++ ...+.|+++
T Consensus 75 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~-~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 75 RFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEECC-GGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred EEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEECC-cchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 489999999652 2345667999999666665443 2111 111 12233333 235789999
Q ss_pred eeccCCCCCC
Q 045702 224 VITKLDIMDR 233 (728)
Q Consensus 224 VltK~D~~~~ 233 (728)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999764
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.01 E-value=1.3e-11 Score=121.78 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=37.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH---HHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD---ALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|++.+|++|+++ +++....-.. ++..+......+.++++|+||+
T Consensus 83 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 148 (199)
T 3l0i_B 83 KLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVY-DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148 (199)
T ss_dssp EEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC--CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCS
T ss_pred EEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECc
Confidence 5899999995432 123445788999555554 4433222222 2333444445578999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 149 Dl~~~ 153 (199)
T 3l0i_B 149 DLTTK 153 (199)
T ss_dssp SCC--
T ss_pred cCCcc
Confidence 99754
No 121
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.01 E-value=2.3e-10 Score=111.67 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=23.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.+|+|+|+.++|||||+++|++..|
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 4799999999999999999998875
No 122
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.00 E-value=3e-10 Score=110.62 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.+|||||..... .+...|++.+|++|+++...+ .-.-......+..+ ...+.|+++|+||
T Consensus 67 ~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 132 (189)
T 2x77_A 67 SFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTD-RDRMGVAKHELYALLDEDELRKSLLLIFANK 132 (189)
T ss_dssp EEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTC-CTTHHHHHHHHHHHHTCSTTTTCEEEEEEEC
T ss_pred EEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCC-HHHHHHHHHHHHHHHhhhhcCCCeEEEEEEC
Confidence 58999999975331 123457889996666555433 22222222222222 2347899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 133 ~Dl~~~ 138 (189)
T 2x77_A 133 QDLPDA 138 (189)
T ss_dssp TTSTTC
T ss_pred CCCcCC
Confidence 999765
No 123
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.00 E-value=4.6e-10 Score=110.53 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=42.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cc-cHHHHHHHHHhCC-CCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LA-TSDALQMAREADP-TGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~l~~~~d~-~~~rti~VltK~ 228 (728)
.+.+|||||.... ...+...|++.++++|+++...+.. +. -..++..++...+ .+.++|+|.||+
T Consensus 73 ~l~i~Dt~g~~~~------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDA------------GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGG------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEecCCCccc------------hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 4789999997521 1125567888999766666543311 11 1122222333222 478999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 141 Dl~~~ 145 (195)
T 3cbq_A 141 DLARS 145 (195)
T ss_dssp TCTTT
T ss_pred hcccc
Confidence 99754
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.00 E-value=1.2e-09 Score=106.91 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=42.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.++||||.... +.+...|++.++++|+++...+ .-.-.........+ ...+.|+++|+||
T Consensus 68 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 68 KFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAAD-PERFDEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp EEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTC-GGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCC-hHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 5899999997532 2345678899996666665443 22222222222222 2357899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+..
T Consensus 134 ~Dl~~ 138 (190)
T 1m2o_B 134 IDAPN 138 (190)
T ss_dssp TTSTT
T ss_pred CCCcC
Confidence 99976
No 125
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.99 E-value=2e-10 Score=111.13 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=43.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+.. +... .++..++...+ +.++++|+||+
T Consensus 54 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECH
T ss_pred EEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcc
Confidence 4789999997532 234556889999666666543311 1111 13344444444 78999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 120 Dl~~~ 124 (186)
T 1mh1_A 120 DLRDD 124 (186)
T ss_dssp HHHTC
T ss_pred ccccc
Confidence 99764
No 126
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.99 E-value=1.4e-10 Score=113.54 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc----HHHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT----SDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||... ...+...|+..++++|+++...+ ...- ..+...++... .+.++++|+||
T Consensus 72 ~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK 136 (194)
T 3reg_A 72 ILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFAVNN-RTSFDNISTKWEPEIKHYI-DTAKTVLVGLK 136 (194)
T ss_dssp EEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHC-TTSEEEEEEEC
T ss_pred EEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 479999999542 23456678999996666665433 2111 12233444443 36899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 137 ~Dl~~~ 142 (194)
T 3reg_A 137 VDLRKD 142 (194)
T ss_dssp GGGCCT
T ss_pred hhhccC
Confidence 999854
No 127
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.99 E-value=1.3e-10 Score=115.22 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=43.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||... ...+...|+..++++|+++...+ ...-. .++..++... .+.++++|+||
T Consensus 79 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~piilv~nK 143 (204)
T 4gzl_A 79 NLGLWDTAGLED-------------YDRLRPLSYPQTDVFLICFSLVS-PASFENVRAKWYPEVRHHC-PNTPIILVGTK 143 (204)
T ss_dssp EEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHC-SSCCEEEEEEC
T ss_pred EEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhC-CCCCEEEEEec
Confidence 467999999742 22455668899996666664433 22111 1233444443 36899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 144 ~Dl~~~~ 150 (204)
T 4gzl_A 144 LDLRDDK 150 (204)
T ss_dssp HHHHTCH
T ss_pred hhhccch
Confidence 9998654
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.99 E-value=1.5e-10 Score=114.24 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=43.2
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|++.++++|+++...+.. +.. ..+...++...+ +.++++|+||+
T Consensus 74 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 139 (201)
T 2gco_A 74 ELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKK 139 (201)
T ss_dssp EEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECG
T ss_pred EEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecH
Confidence 4799999995422 234456889999666665433211 111 123344444443 68999999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 140 Dl~~~~ 145 (201)
T 2gco_A 140 DLRQDE 145 (201)
T ss_dssp GGTTCH
T ss_pred HhhcCc
Confidence 998653
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.99 E-value=1.4e-09 Score=107.32 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=41.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHh----CCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREA----DPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~----d~~~~rti~VltK 227 (728)
.+.+|||||... .+.+...|++.++++|+++...+.+ .-......+..+ ...+.|+++|+||
T Consensus 70 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK 135 (198)
T 1f6b_A 70 TFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADHE-RLLESKEELDSLMTDETIANVPILILGNK 135 (198)
T ss_dssp EEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTSCEEEEEEC
T ss_pred EEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEEEC
Confidence 589999999542 2335667899999666666544322 222222222222 2357899999999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+.+
T Consensus 136 ~Dl~~ 140 (198)
T 1f6b_A 136 IDRPE 140 (198)
T ss_dssp TTSTT
T ss_pred CCccc
Confidence 99976
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.99 E-value=9.8e-11 Score=112.97 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=41.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|++.++++|+++...+ ...-. .++..++...+ +.++++|+||
T Consensus 57 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 121 (182)
T 3bwd_D 57 NLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLIS-KASYENVSKKWIPELKHYAP-GVPIVLVGTK 121 (182)
T ss_dssp -CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 4789999996422 2345678899996666665433 21111 13334444444 7899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (182)
T 3bwd_D 122 LDLRDD 127 (182)
T ss_dssp HHHHTC
T ss_pred hhhhcC
Confidence 999754
No 131
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.98 E-value=2.2e-10 Score=112.77 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHH
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEI 122 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i 122 (728)
....+|+|+|..++|||||+++|++..+ +....++|......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 3456899999999999999999998875 32222222111100
Q ss_pred HHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc
Q 045702 123 MAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL 202 (728)
Q Consensus 123 ~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~ 202 (728)
.+.+.+ ....+.||||||..... .+...|+..++++|+++...+ ..
T Consensus 60 -------------------~~~~~~-~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~-~~ 105 (201)
T 2q3h_A 60 -------------------VVSVDG-RPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVS-PS 105 (201)
T ss_dssp -------------------EEEETT-EEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTC-HH
T ss_pred -------------------EEEECC-EEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCC-HH
Confidence 000100 01147899999975321 234568899996666665433 22
Q ss_pred ccHH----HHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 203 ATSD----ALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 203 ~~~~----~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.-.+ ++..++...+ +.++++|+||+|+.+.
T Consensus 106 s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 106 SFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2112 2233444443 7899999999999754
No 132
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=2.1e-10 Score=112.32 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=43.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH--HHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS--DALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|++.++++|+++...+.. +... .++..++...+ +.++++|+||+
T Consensus 67 ~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 132 (194)
T 2atx_A 67 LLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQI 132 (194)
T ss_dssp EEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECT
T ss_pred EEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECh
Confidence 4799999997532 134556889999666666543321 1111 22334444433 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 133 Dl~~~ 137 (194)
T 2atx_A 133 DLRDD 137 (194)
T ss_dssp TSTTC
T ss_pred hhccc
Confidence 99864
No 133
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=1.2e-10 Score=115.69 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=42.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc--HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT--SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+.. +.. ..++..++...+ +.++++|+||+
T Consensus 74 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKK 139 (207)
T ss_dssp EEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECG
T ss_pred EEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEch
Confidence 4899999996532 134456889999666666543321 111 122334444433 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+...
T Consensus 140 Dl~~~ 144 (207)
T 2fv8_A 140 DLRSD 144 (207)
T ss_dssp GGGGC
T ss_pred hhhcc
Confidence 99754
No 134
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.97 E-value=1.7e-09 Score=123.42 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHhhcccCCCC-CCCCCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCC
Q 045702 19 GSSVIPIINRLQDIFSPVDGEL-SKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDD 97 (728)
Q Consensus 19 ~~~l~~~~~~l~d~~~~~~g~~-~~~~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~ 97 (728)
++.++..+..+...-.. |.. ....-.+|++||.+|||||||+|+|+|..| +....+++..........
T Consensus 16 ~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~-------- 84 (535)
T 3dpu_A 16 KEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAP-------- 84 (535)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGG--------
T ss_pred HHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEeccc--------
Confidence 45566666665542111 222 244556899999999999999999999876 221111111110000000
Q ss_pred ccchhhhccCCCCcccChHHHHHHHHHHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHH
Q 045702 98 GREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARI 177 (728)
Q Consensus 98 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~ 177 (728)
.++.. ...+ ......+.++||||....
T Consensus 85 --~~~~v-~~~~-------------------------------------~~~~~~~~i~Dt~G~e~~------------- 111 (535)
T 3dpu_A 85 --NIKGL-ENDD-------------------------------------ELKECLFHFWDFGGQEIM------------- 111 (535)
T ss_dssp --GSGGG-TTCS-------------------------------------TTTTCEEEEECCCSCCTT-------------
T ss_pred --cccce-eecC-------------------------------------CCceEEEEEEECCcHHHH-------------
Confidence 00000 0000 000124899999994322
Q ss_pred HHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCCccHHHhHcCCCcccCCceeEeec
Q 045702 178 RKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVN 257 (728)
Q Consensus 178 ~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 257 (728)
..+...|++.++.+|++ ++++..-....++..++...+ ..++|+|+||+|+........+.++.....++..++.+++
T Consensus 112 ~~~~~~~l~~~d~ii~V-~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 189 (535)
T 3dpu_A 112 HASHQFFMTRSSVYMLL-LDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISC 189 (535)
T ss_dssp TTTCHHHHHSSEEEEEE-ECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC
T ss_pred HHHHHHHccCCcEEEEE-EeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEec
Confidence 12344578888855544 455444333344555556554 5899999999999864432222222222223345777776
Q ss_pred CChhhhh
Q 045702 258 RSQEDIN 264 (728)
Q Consensus 258 rs~~~~~ 264 (728)
....+++
T Consensus 190 ~~g~gi~ 196 (535)
T 3dpu_A 190 KNGDGVE 196 (535)
T ss_dssp -----CT
T ss_pred CcccCHH
Confidence 6655443
No 135
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.97 E-value=2e-09 Score=104.41 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=41.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.+.+|||||....... . ..+.+...|+. .++.+++ |.++.. . .....++..+...+.++++|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~-v~d~~~-~--~~~~~~~~~~~~~~~piilv~nK~D 123 (188)
T 2wjg_A 55 KFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVN-IVDATA-L--ERNLYLTLQLMEMGANLLLALNKMD 123 (188)
T ss_dssp EEEEEECCCCSCCSSS----S---HHHHHHHHHHHHHCCSEEEE-EEEGGG-H--HHHHHHHHHHHTTTCCEEEEEECHH
T ss_pred EEEEEECCCcCccccc----c---HHHHHHHHHHhccCCCEEEE-Eecchh-H--HHHHHHHHHHHhcCCCEEEEEEhhh
Confidence 5899999998644211 1 12234556665 4775444 444432 1 1223444555446789999999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+..
T Consensus 124 l~~ 126 (188)
T 2wjg_A 124 LAK 126 (188)
T ss_dssp HHH
T ss_pred ccc
Confidence 864
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=113.56 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=33.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.. ....+...|+..++++|+++...+ ...-. .++..++... .+.++++|+||
T Consensus 83 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~piilv~nK 147 (214)
T 2j1l_A 83 HLHIWDTAGQD-------------DYDRLRPLFYPDASVLLLCFDVTS-PNSFDNIFNRWYPEVNHFC-KKVPIIVVGCK 147 (214)
T ss_dssp EEEEEEC----------------------------CEEEEEEEEETTC-HHHHHHHHHTHHHHHHHHC-SSCCEEEEEEC
T ss_pred EEEEEECCCch-------------hhhHHHHHHhccCCEEEEEEECcC-HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 48999999943 334566778999996666664432 21111 1233344443 36899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+...
T Consensus 148 ~Dl~~~ 153 (214)
T 2j1l_A 148 TDLRKD 153 (214)
T ss_dssp GGGGSC
T ss_pred hhhhcc
Confidence 999864
No 137
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.96 E-value=7.6e-10 Score=106.46 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+|+|+|+.++|||||+++|++..|
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34799999999999999999999876
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.95 E-value=5.4e-09 Score=111.71 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=41.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH-HHHHH---hCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL-QMARE---ADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l~~~---~d~~~~rti~VltK 227 (728)
.++||||||-. .+..+...|++.++.+|+++...+.+ .-.... .+... ....+.++|+|+||
T Consensus 210 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~vilV~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilV~NK 275 (329)
T 3o47_A 210 SFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREELMRMLAEDELRDAVLLVFANK 275 (329)
T ss_dssp EEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSS-SHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEECCCCH-------------hHHHHHHHHhccCCEEEEEEECCchH-HHHHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence 58999999932 33456778899999666666543322 111212 22222 22247899999999
Q ss_pred CCCCCCC
Q 045702 228 LDIMDRG 234 (728)
Q Consensus 228 ~D~~~~~ 234 (728)
+|+.+..
T Consensus 276 ~Dl~~~~ 282 (329)
T 3o47_A 276 QDLPNAM 282 (329)
T ss_dssp TTSTTCC
T ss_pred ccCCccc
Confidence 9998654
No 139
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.95 E-value=9.8e-10 Score=110.25 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=46.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc--ccHHHHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL--ATSDALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~D 229 (728)
.|.||||+|-- ....+...|++.++++|+++...+..- .-..++..++.......++|+|.||+|
T Consensus 63 ~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEECCCch-------------hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 57899999954 334577889999997777775443211 112234444444455789999999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 130 l~~~ 133 (216)
T 4dkx_A 130 LADK 133 (216)
T ss_dssp CGGG
T ss_pred hHhc
Confidence 8653
No 140
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=118.60 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCC-CCchhHHHHHHHHHHHHhhcCC-------------eEEEEEecCCCCcccHHHHHHHHHhCCC
Q 045702 152 NMTLVDLPGITKVPVG-DQPTDIEARIRKMIMAYIRQEN-------------CIILAVSPANSDLATSDALQMAREADPT 217 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~-~~~~~~~~~~~~~~~~yi~~~~-------------~iIL~V~~a~~d~~~~~~l~l~~~~d~~ 217 (728)
.+++|||||+...... ..-..+...+......|+...+ +++++|.++...+...+ ..+++.+. .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~-~ 173 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH-N 173 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-c
Confidence 5899999999543211 0011223334444457776543 35556655566666655 56777776 5
Q ss_pred CCceEEeeccCCCCCCC
Q 045702 218 GSRTIGVITKLDIMDRG 234 (728)
Q Consensus 218 ~~rti~VltK~D~~~~~ 234 (728)
+.++|+|+||+|+....
T Consensus 174 ~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -SCEEEEEECCSSSCHH
T ss_pred CCCEEEEEECCCCCCHH
Confidence 78999999999998643
No 141
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.47 E-value=9.2e-11 Score=115.99 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=42.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHH-HHHHHhCCC--CCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDAL-QMAREADPT--GSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l-~l~~~~d~~--~~rti~VltK~ 228 (728)
.+.||||||.. ....+...|++.++++|+++...+ ...-.+.. .+...+... +.++++|+||+
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~D~~~-~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVS-PASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 47799999954 234566778899996666654333 21111211 223333222 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99864
No 142
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.93 E-value=7.9e-10 Score=110.49 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c--cHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A--TSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||... +..+...|++.++++|+++...+..- . ...++..++...+ +.++++|.||+
T Consensus 76 ~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~ 141 (214)
T 3q3j_B 76 ELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKT 141 (214)
T ss_dssp EEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECG
T ss_pred EEEEEECCCCHh-------------HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECh
Confidence 478999999642 23455678999997766665443221 1 1233445555543 68999999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 142 Dl~~~ 146 (214)
T 3q3j_B 142 DLRTD 146 (214)
T ss_dssp GGGGC
T ss_pred hhccc
Confidence 99753
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.92 E-value=3.9e-09 Score=117.29 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=50.1
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc-------cHHH
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA-------TSDA 207 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~-------~~~~ 207 (728)
+++.+.....+..++. .++||||||.. .+...+..++..+|.+||+| +++.... .+.
T Consensus 80 GiTid~~~~~~~~~~~-~~~iiDTPGh~-------------~f~~~~~~~~~~aD~~ilVV-Da~~g~~e~~~~~~~qt- 143 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKK-HFTILDAPGHK-------------SFVPNMIGGASQADLAVLVI-SARKGEFETGFEKGGQT- 143 (439)
T ss_pred CceEEEeEEEEecCCe-EEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEE-ECCCCccccccCCCchH-
Confidence 3444444444444443 79999999953 33455667888999655555 4544331 222
Q ss_pred HHHHHHhCCCCCc-eEEeeccCCCCCC
Q 045702 208 LQMAREADPTGSR-TIGVITKLDIMDR 233 (728)
Q Consensus 208 l~l~~~~d~~~~r-ti~VltK~D~~~~ 233 (728)
.+.+..+...+.+ +|+|+||+|+...
T Consensus 144 ~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 144 REHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 3333333334566 8999999999754
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.92 E-value=2.8e-10 Score=113.12 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+. ..-. .++..++...+ +.|+++|+||
T Consensus 58 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~-~~piilv~nK 122 (212)
T 2j0v_A 58 NLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISK-ASYENVLKKWMPELRRFAP-NVPIVLVGTK 122 (212)
T ss_dssp EEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhCC-CCCEEEEEeC
Confidence 5899999997532 12345688999966666644332 1111 23334444444 6899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (212)
T 2j0v_A 123 LDLRDD 128 (212)
T ss_dssp HHHHTC
T ss_pred HHhhhC
Confidence 999754
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.91 E-value=3.3e-09 Score=103.27 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
...+|+|+|+.++|||||+++|++..|
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998876
No 146
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.7e-09 Score=123.10 Aligned_cols=147 Identities=24% Similarity=0.279 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
...+|++||..++|||||+|+|++.... +..+.. ..+.......|....++.-+.+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~-----i~~~~i----------------~~~~~~~~~~g~~~~~~a~~~d~~~ 224 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNI-----VNQSQL----------------RKLQRESETMGKSSFKFAWIMDQTN 224 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSC-----SCCHHH----------------HHHHHHSSCSSSSCCSSSHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCC-----ccHHHH----------------HHHHhhhhhccccccceeeeeccch
Confidence 4568999999999999999999986421 110000 0000000001111112222222222
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC--
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-- 201 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-- 201 (728)
.+. . .+++.+.....+..+. ..++||||||.. .+...+..++..+|++||+| +++.+
T Consensus 225 ~e~--~----~GiTid~~~~~~~~~~-~~~~iiDTPG~e-------------~f~~~~~~~~~~aD~~llVV-Da~~g~~ 283 (611)
T 3izq_1 225 EER--E----RGVTVSICTSHFSTHR-ANFTIVDAPGHR-------------DFVPNAIMGISQADMAILCV-DCSTNAF 283 (611)
T ss_dssp HHH--H----TTTCCSCSCCEEECSS-CEEEEEECCSSS-------------CHHHHHTTTSSCCSEEEEEE-ECSHHHH
T ss_pred hhh--h----CCeeEeeeeEEEecCC-ceEEEEECCCCc-------------ccHHHHHHHHhhcCceEEEE-ECCCCcc
Confidence 111 1 1233333333333333 368999999974 23455667889999555555 44432
Q ss_pred -----cccHHHHHHHHHhCCCC-CceEEeeccCCCCCC
Q 045702 202 -----LATSDALQMAREADPTG-SRTIGVITKLDIMDR 233 (728)
Q Consensus 202 -----~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~ 233 (728)
+..+. ...+..+...+ .++|+|+||+|+.+.
T Consensus 284 e~~~~~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 284 ESGFDLDGQT-KEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp HTTCCTTSHH-HHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred cccchhhhHH-HHHHHHHHHcCCCeEEEEEecccccch
Confidence 22233 33333333334 459999999999863
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.90 E-value=2.8e-10 Score=114.11 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=53.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc---HHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT---SDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...- ..++..+.... .+.++++|+||+
T Consensus 65 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 65 KFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTS-RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTC-HHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 4899999995422 2345568889996666654433 2111 12333333433 268999999999
Q ss_pred CCCCCCccHHHhHcCCCcccCCceeEeecCChhhhh
Q 045702 229 DIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDIN 264 (728)
Q Consensus 229 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~rs~~~~~ 264 (728)
|+.+...... ...........|+.++.....++.
T Consensus 130 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 130 DIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp TSSSCSSCGG--GCCHHHHHTCEEEECBGGGTBTTT
T ss_pred ccccccccHH--HHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9976443211 101011123567777666554443
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.89 E-value=2.4e-09 Score=121.38 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=50.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+. ...+..|++.+|++|++ +++......+. ..+++.+...+.|+|+|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~allV-vDa~~g~~~~t-~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 82 YLINLLDTPGHADF-------------TEDTYRTLTAVDSALMV-IDAAKGVEPRT-IKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEE-EETTTCSCHHH-HHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEE-EeCCCCCCHHH-HHHHHHHHHcCCCEEEEEeCCCC
Confidence 36899999997632 23577899999955555 55555555444 66777777778999999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 147 ~~~~ 150 (528)
T 3tr5_A 147 DTRP 150 (528)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7543
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.88 E-value=4.3e-09 Score=119.01 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=70.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAE 125 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 125 (728)
.+|+|||.+|+|||||+|+|++..+ +. ...|.-+....
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~--------------------------------------- 360 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVET--------------------------------------- 360 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEE---------------------------------------
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEE---------------------------------------
Confidence 4799999999999999999998874 21 11222221110
Q ss_pred hhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH
Q 045702 126 TNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS 205 (728)
Q Consensus 126 ~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~ 205 (728)
+...+ ..+.||||||... +..+...|++.+|.+|+++. ++....-.
T Consensus 361 -------------------~~~~~-~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~V~D-~~~~~s~~ 406 (497)
T 3lvq_E 361 -------------------VTYKN-VKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVD-CADRDRID 406 (497)
T ss_dssp -------------------EESSS-CEEEEEEECCCGG-------------GSGGGGGGGTTCCEEEEEEE-TTCGGGHH
T ss_pred -------------------EEeCC-EEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEE-CcchhHHH
Confidence 11111 2589999999542 23456789999996655554 43332222
Q ss_pred HHHHHHHHh----CCCCCceEEeeccCCCCCCC
Q 045702 206 DALQMAREA----DPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 206 ~~l~l~~~~----d~~~~rti~VltK~D~~~~~ 234 (728)
+....+..+ ...+.++|+|+||+|+.+..
T Consensus 407 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 407 EARQELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 222233322 22478999999999997643
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.88 E-value=1.9e-09 Score=121.41 Aligned_cols=115 Identities=22% Similarity=0.242 Sum_probs=63.4
Q ss_pred CcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC------cccHH--
Q 045702 135 GVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD------LATSD-- 206 (728)
Q Consensus 135 ~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d------~~~~~-- 206 (728)
+++.+.....+..+. ..++||||||.. .+...+..++..+|.+||+|...+.. +..+.
T Consensus 96 GiTi~~~~~~~~~~~-~~~~iiDTPG~~-------------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e 161 (483)
T 3p26_A 96 GVTVSICTSHFSTHR-ANFTIVDAPGHR-------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 161 (483)
T ss_dssp CSSCCCCEEEEECSS-CEEEEECCCCCG-------------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH
T ss_pred CcceEeeeEEEecCC-ceEEEEECCCcH-------------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH
Confidence 445555555555544 369999999975 23456677899999666655543321 22222
Q ss_pred HHHHHHHhCCCCCceEEeeccCCCCCCCccHH--------HhHcCCC-cccCCceeEeecCChhhhhc
Q 045702 207 ALQMAREADPTGSRTIGVITKLDIMDRGTNAC--------NFLLGKV-VPLRLGYVGVVNRSQEDINK 265 (728)
Q Consensus 207 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~--------~~l~~~~-~~l~~g~~~v~~rs~~~~~~ 265 (728)
.+.+++.+. ..++|+|+||+|+.+...... +++.... .+-...|+.++......+..
T Consensus 162 ~~~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 162 HMLLASSLG--IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHTT--CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHcC--CCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 223333332 246999999999986332211 1111100 11134567777776665543
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.86 E-value=2e-09 Score=104.49 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=41.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...-. .+...++...+ +.|+++|+||
T Consensus 56 ~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 120 (184)
T 1m7b_A 56 ELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCP-NTKMLLVGCK 120 (184)
T ss_dssp EEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCT-TCEEEEEEEC
T ss_pred EEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCC-HHHHHHHHHHHHHHHHHHCC-CCCEEEEEEc
Confidence 4799999996422 2334558899996666665433 21111 12233444443 6899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 121 ~Dl~~~ 126 (184)
T 1m7b_A 121 SDLRTD 126 (184)
T ss_dssp GGGGGC
T ss_pred chhhcc
Confidence 999753
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.84 E-value=8.8e-09 Score=108.99 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHH---HHHHHHhC--CCCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDA---LQMAREAD--PTGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~---l~l~~~~d--~~~~rti~Vlt 226 (728)
.+.||||||.... .......+...|++.++++|+++...+ ...-.+. ...+..+. ..+.|+++|+|
T Consensus 53 ~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~-~~s~~~l~~~~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 53 TLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVES-TEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp EEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTC-SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred EEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCC-hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 5899999995411 122235677889999996666665443 2221221 22222221 23689999999
Q ss_pred cCCCCC
Q 045702 227 KLDIMD 232 (728)
Q Consensus 227 K~D~~~ 232 (728)
|+|+..
T Consensus 124 K~Dl~~ 129 (307)
T 3r7w_A 124 KMDLVQ 129 (307)
T ss_dssp CGGGSC
T ss_pred cccccc
Confidence 999986
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.83 E-value=3.4e-10 Score=127.89 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHH
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIM 123 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~ 123 (728)
..|.|+|+|..++|||||+++|++..+.....+..|.-... +
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~----------------~---------------------- 44 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGA----------------F---------------------- 44 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTS----------------C----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeE----------------E----------------------
Confidence 46899999999999999999999876532222222211100 0
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+..+....++||||||.... ..+...+++.+|.+| +|++++....
T Consensus 45 --------------------~v~~~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vI-LVVDa~dg~~ 90 (537)
T 3izy_P 45 --------------------LVSLPSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVI-LVVAADDGVM 90 (537)
T ss_dssp --------------------CBCSSCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCE-EECBSSSCCC
T ss_pred --------------------EEEeCCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEE-EEEECCCCcc
Confidence 000011124799999995422 233446778889554 5555655544
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.+. ...+..+...+.|+|+|+||+|+.+.
T Consensus 91 ~qt-~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 91 KQT-VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHH-HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHH-HHHHHHHHHcCCcEEEEEeccccccc
Confidence 444 56666666678899999999999754
No 154
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.82 E-value=2.9e-09 Score=105.76 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH----HHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS----DALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~----~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...-. .++..++...+ +.++++|+||
T Consensus 77 ~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~-~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 141 (205)
T 1gwn_A 77 ELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISR-PETLDSVLKKWKGEIQEFCP-NTKMLLVGCK 141 (205)
T ss_dssp EEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCT-TCEEEEEEEC
T ss_pred EEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCC-CCCEEEEEec
Confidence 4899999996422 2344568899996666665433 21111 12233444433 6899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 142 ~Dl~~~ 147 (205)
T 1gwn_A 142 SDLRTD 147 (205)
T ss_dssp GGGGGC
T ss_pred hhhccc
Confidence 999753
No 155
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.82 E-value=6.2e-09 Score=114.47 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=43.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c--cHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A--TSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.++||||||.. .+...+..++..+|.+||++ +++... . +.+.+.+++.+. ..++|+|+||+
T Consensus 76 ~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~ilVv-da~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~ 139 (403)
T 3sjy_A 76 RISFIDAPGHE-------------VLMATMLSGAALMDGAILVV-AANEPFPQPQTREHFVALGIIG--VKNLIIVQNKV 139 (403)
T ss_dssp EEEEEECCCCG-------------GGHHHHHHHHTTCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred eEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEE-ECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECc
Confidence 58999999943 23455677889999555555 555443 2 223344455443 25899999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 140 Dl~~~ 144 (403)
T 3sjy_A 140 DVVSK 144 (403)
T ss_dssp GGSCH
T ss_pred cccch
Confidence 99864
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=6.7e-09 Score=103.77 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-cccH-HHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LATS-DALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~~-~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.+.++||+|... ....+...|.+.++++|++++-.+.. +... .+...+... ...+.|+|+|.||+
T Consensus 88 ~l~~~Dt~g~~~------------~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 88 TIILLDMWENKG------------ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEECCTTTTH------------HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred EEEEeecCCCcc------------hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 478999999541 12335566788889777776543321 1111 122222222 23468999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+.+
T Consensus 156 DL~~ 159 (211)
T 2g3y_A 156 DLVR 159 (211)
T ss_dssp TCGG
T ss_pred HHhc
Confidence 9964
No 157
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=4.7e-09 Score=114.86 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC-CcccccceEEE
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC-DICTRRPLALM 86 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~-~~~Tr~p~~i~ 86 (728)
+|++||.+|+|||||+|+|+|... .++. ..||+-|+...
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~ 41 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGV 41 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEE
Confidence 699999999999999999999873 3332 34777776543
No 158
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.77 E-value=1.2e-08 Score=115.63 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=49.9
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+. ...+..|+..+|++|+++. +......+. ..+++.+...+.++++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvD-a~~g~~~~t-~~~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVID-AAKGVEDRT-RKLMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEE-TTTCSCHHH-HHHHHHHTTTTCCEEEEEECTTS
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEe-CCccchHHH-HHHHHHHHHcCCCEEEEEcCcCC
Confidence 36899999997532 2346678999996555554 444444443 66777777778999999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 147 ~~~~ 150 (529)
T 2h5e_A 147 DIRD 150 (529)
T ss_dssp CCSC
T ss_pred cccc
Confidence 8654
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.76 E-value=5.2e-09 Score=111.24 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH----HHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD----ALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~----~l~l~~~~d~~~~rti~VltK 227 (728)
.+.||||||.... ..+...|+..++++|+++...+ ...-.+ +...++...+ +.|+++|+||
T Consensus 204 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 268 (332)
T 2wkq_A 204 NLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVS-PASFHHVRAKWYPEVRHHCP-NTPIILVGTK 268 (332)
T ss_dssp EEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTC-HHHHHHHHHTHHHHHHHHCT-TSCEEEEEEC
T ss_pred EEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhhCC-CCcEEEEEEc
Confidence 4679999997532 2445668899996666654433 222112 2234444444 7899999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 269 ~Dl~~~ 274 (332)
T 2wkq_A 269 LDLRDD 274 (332)
T ss_dssp HHHHTC
T ss_pred hhcccc
Confidence 999754
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.75 E-value=2e-08 Score=110.51 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=47.5
Q ss_pred EEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc
Q 045702 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR 220 (728)
Q Consensus 141 i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r 220 (728)
..+.+.... ..++||||||..+ +...+..++..+|.+||++. ++.....+. ...+..+...+.+
T Consensus 66 ~~~~~~~~~-~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvd-a~~g~~~qt-~~~l~~~~~~~ip 129 (405)
T 2c78_A 66 AHVEYETAK-RHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVVS-AADGPMPQT-REHILLARQVGVP 129 (405)
T ss_dssp EEEEEECSS-CEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEEE-TTTCCCHHH-HHHHHHHHHTTCC
T ss_pred eeeEeccCC-eEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEEE-CCCCCcHHH-HHHHHHHHHcCCC
Confidence 334444332 3689999999652 23456678899996666655 444443333 3343433334667
Q ss_pred -eEEeeccCCCCC
Q 045702 221 -TIGVITKLDIMD 232 (728)
Q Consensus 221 -ti~VltK~D~~~ 232 (728)
.++|+||+|+.+
T Consensus 130 ~iivviNK~Dl~~ 142 (405)
T 2c78_A 130 YIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECGGGCC
T ss_pred EEEEEEECccccC
Confidence 789999999985
No 161
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=3e-08 Score=108.53 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=51.4
Q ss_pred CeEEEeCCCCcccCCCC-CchhH----HHHHHHHHHHHhhc-----------CCeEEEEEecCCCCcccHHHHHHHHHhC
Q 045702 152 NMTLVDLPGITKVPVGD-QPTDI----EARIRKMIMAYIRQ-----------ENCIILAVSPANSDLATSDALQMAREAD 215 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~-~~~~~----~~~~~~~~~~yi~~-----------~~~iIL~V~~a~~d~~~~~~l~l~~~~d 215 (728)
+++++|+||+....... .-..+ ...+......|+.- .|++++++++++.++...| ..+++.+.
T Consensus 96 ~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L~ 174 (427)
T 2qag_B 96 KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKLD 174 (427)
T ss_dssp EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHTC
T ss_pred ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHHh
Confidence 68999999996432100 00112 22333333443211 1346888899988888887 88999998
Q ss_pred CCCCceEEeeccCCCCCCCc
Q 045702 216 PTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 216 ~~~~rti~VltK~D~~~~~~ 235 (728)
.+.++|+|+||+|.+.+.+
T Consensus 175 -~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 175 -SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp -SCSEEEEEESCGGGSCHHH
T ss_pred -hCCCEEEEEcchhccchHH
Confidence 6899999999999997543
No 162
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=5.9e-08 Score=106.57 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=43.0
Q ss_pred CeEEEeCCCCcccCCC-CCchhHHHHHHHHHHHHh-----------hcCC--eEEEEEecCCCCcccHHHHHHHHHhCCC
Q 045702 152 NMTLVDLPGITKVPVG-DQPTDIEARIRKMIMAYI-----------RQEN--CIILAVSPANSDLATSDALQMAREADPT 217 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~-~~~~~~~~~~~~~~~~yi-----------~~~~--~iIL~V~~a~~d~~~~~~l~l~~~~d~~ 217 (728)
.++++||||+...... ..-..+...+......|+ ..++ ++++++.+....+...+ ..+++.+..
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~- 166 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE- 166 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT-
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc-
Confidence 6899999998643211 111223333344444454 3333 23334444335666655 577788875
Q ss_pred CCceEEeeccCCCCCC
Q 045702 218 GSRTIGVITKLDIMDR 233 (728)
Q Consensus 218 ~~rti~VltK~D~~~~ 233 (728)
+.++|+|+||+|++..
T Consensus 167 ~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 KVNIIPLIAKADTLTP 182 (418)
T ss_dssp TSEEEEEEESTTSSCH
T ss_pred cCcEEEEEEcccCccH
Confidence 7899999999999864
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.71 E-value=1.8e-09 Score=121.00 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||..... .+..+++..+|.+||+|. ++.+...+. ...+..+...+.|+|+|+||+|+.
T Consensus 52 ~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT-~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 52 MITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQT-IEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp CCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTT-HHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHH-HHHHHHHHhcCceEEEEEEecccc
Confidence 47999999964321 223456788896666664 544433332 333333333468899999999997
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
+.
T Consensus 117 ~~ 118 (501)
T 1zo1_I 117 EA 118 (501)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 164
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.71 E-value=7.7e-08 Score=112.86 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=48.4
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+ +...+..+++.+|.+|++| ++..+...+. ..+++.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVv-Da~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVY-CAVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEE-eCCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 4699999999652 3345677889999555555 4544444333 45556665667899999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 147 ~~~~ 150 (704)
T 2rdo_7 147 MGAN 150 (704)
T ss_pred cccc
Confidence 7654
No 165
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.70 E-value=1.5e-08 Score=113.94 Aligned_cols=66 Identities=24% Similarity=0.210 Sum_probs=44.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||.. .+...+..++..+|.+||++ +++.+...+. .+.+..+...+.+.|+|+||+|+.
T Consensus 74 ~i~iiDtPGh~-------------~~~~~~~~~~~~aD~~ilVv-da~~g~~~qt-~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 74 RITLVDAPGHA-------------DLIRAVVSAADIIDLALIVV-DAKEGPKTQT-GEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp EEEECCCSSHH-------------HHHHHHHHHTTSCCEEEEEE-ETTTCSCHHH-HHHHHHHHHTTCCBCEEEECTTSS
T ss_pred EEEEEECCChH-------------HHHHHHHHHHhhCCEEEEEE-ecCCCccHHH-HHHHHHHHHcCCCEEEEEECCCcc
Confidence 58999999942 34456677889999555555 5555443333 333333333468889999999998
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
+
T Consensus 139 ~ 139 (482)
T 1wb1_A 139 G 139 (482)
T ss_dssp C
T ss_pred c
Confidence 5
No 166
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.70 E-value=1.2e-08 Score=99.06 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=40.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc----HHHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT----SDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK 227 (728)
.+.++||||.. ....+...|++.++.+++++. .+..... ..++..++...+ +.++++|.||
T Consensus 57 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK 121 (184)
T 2zej_A 57 VLNVWDFAGRE-------------EFYSTHPHFMTQRALYLAVYD-LSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121 (184)
T ss_dssp EEEEEEECSHH-------------HHHTTSHHHHHHSEEEEEEEE-GGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEEC
T ss_pred EEEEEecCCCH-------------HHHHhhHHHccCCcEEEEEEe-CCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEEC
Confidence 57899999943 334456678888886655554 3222111 112222223322 6889999999
Q ss_pred CCCCCC
Q 045702 228 LDIMDR 233 (728)
Q Consensus 228 ~D~~~~ 233 (728)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (184)
T 2zej_A 122 LDVSDE 127 (184)
T ss_dssp GGGCCH
T ss_pred CCcccc
Confidence 999753
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=9.9e-09 Score=120.25 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..+.||||||..+. ...+..+++.+|.+|+++ ++......++ ..+++.+...+.+.++|+||+|+
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVv-Da~~g~~~~~-~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVL-DAQSGVEPQT-ETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEE-CCCCCCcHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 36899999998632 134567888999555554 5555544444 45555555567899999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 140 ~~~~ 143 (693)
T 2xex_A 140 LGAN 143 (693)
T ss_dssp TTCC
T ss_pred cccc
Confidence 8643
No 168
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.69 E-value=1.7e-08 Score=98.89 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=40.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-ccc-HHHHHHHHHh-CCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-LAT-SDALQMAREA-DPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~l~~~~-d~~~~rti~VltK~ 228 (728)
.+.++||+|.... .+.+...|++.++++|+++.-.+.+ +.. ..+...+... ...+.++|+|.||+
T Consensus 57 ~l~~~Dt~~~~~~------------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcch------------hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 4689999995421 1123355777889777776544321 111 1223333333 34578999999999
Q ss_pred CCCC
Q 045702 229 DIMD 232 (728)
Q Consensus 229 D~~~ 232 (728)
|+..
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9864
No 169
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.69 E-value=2.5e-08 Score=114.22 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=51.4
Q ss_pred cceEEEEEecCCC--cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhC
Q 045702 138 EKQIGLKISSPNV--LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREAD 215 (728)
Q Consensus 138 ~~~i~l~i~~p~~--~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d 215 (728)
.....+.+..++. ..++||||||..+ +...+.+++..+|++||+| +++.+...+. ...+....
T Consensus 58 ~~~~~~~~~~~dg~~~~inliDTPGh~d-------------F~~ev~r~l~~aD~aILVV-Da~~gv~~qt-~~~~~~a~ 122 (600)
T 2ywe_A 58 MQAVRMFYKAKDGNTYKLHLIDTPGHVD-------------FSYEVSRALAACEGALLLI-DASQGIEAQT-VANFWKAV 122 (600)
T ss_dssp CCSEEEEEECTTSCEEEEEEECCCCSGG-------------GHHHHHHHHHTCSEEEEEE-ETTTBCCHHH-HHHHHHHH
T ss_pred eeEEEEEEEcCCCCeEEEEEEECCCcHh-------------HHHHHHHHHHhCCEEEEEE-ECCCCccHHH-HHHHHHHH
Confidence 3344555543222 3689999999762 2335667889999665554 5555554444 33333333
Q ss_pred CCCCceEEeeccCCCCCC
Q 045702 216 PTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 216 ~~~~rti~VltK~D~~~~ 233 (728)
..+.++|+|+||+|+...
T Consensus 123 ~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 123 EQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HTTCEEEEEEECTTSTTC
T ss_pred HCCCCEEEEEeccCcccc
Confidence 457899999999999754
No 170
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.68 E-value=2.5e-08 Score=114.42 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=50.8
Q ss_pred ceEEEEEecCC--CcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC
Q 045702 139 KQIGLKISSPN--VLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADP 216 (728)
Q Consensus 139 ~~i~l~i~~p~--~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~ 216 (728)
..+.+.+...+ ...++||||||..+ +...+.+++..+|.+||+| +++.....+. ...+.....
T Consensus 57 ~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aILVV-Da~~gv~~qt-~~~~~~~~~ 121 (599)
T 3cb4_D 57 QSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGALLVV-DAGQGVEAQT-LANCYTAME 121 (599)
T ss_dssp CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEEEEE-ETTTCCCTHH-HHHHHHHHH
T ss_pred eEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCCHHH-HHHHHHHHH
Confidence 34455544322 23689999999752 2345677899999655555 5555555444 333333333
Q ss_pred CCCceEEeeccCCCCCC
Q 045702 217 TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 217 ~~~rti~VltK~D~~~~ 233 (728)
.+.++|+|+||+|+.+.
T Consensus 122 ~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp TTCEEEEEEECTTSTTC
T ss_pred CCCCEEEeeeccCcccc
Confidence 57899999999999764
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.67 E-value=4.8e-09 Score=120.39 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=43.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||...-. .+..++++.+|.+|| |++++.++..+. ...++.+...+.|+|+|+||+|+.
T Consensus 71 ~i~liDTPGhe~F~-------------~~~~r~~~~aD~aIL-VvDa~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFT-------------TLRKRGGALADLAIL-IVDINEGFKPQT-QEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCT-------------TSBCSSSBSCSEEEE-EEETTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHH-------------HHHHHHHhhCCEEEE-EEECCCCccHhH-HHHHHHHHHcCCeEEEEecccccc
Confidence 48999999975321 123356788895554 555555554433 444444444578999999999997
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 5
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=7e-08 Score=107.10 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=42.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHH--HHHHHHHhCCCCCceEEeeccCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD--ALQMAREADPTGSRTIGVITKLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~--~l~l~~~~d~~~~rti~VltK~D 229 (728)
.++||||||..+ +...+..++..+|.+||++ +++.....+. .+.+++.+. ..++|+|+||+|
T Consensus 105 ~~~iiDtpGh~~-------------f~~~~~~~~~~aD~~ilVv-Da~~g~~~qt~~~l~~~~~~~--~~~iIvviNK~D 168 (434)
T 1zun_B 105 KFIIADTPGHEQ-------------YTRNMATGASTCDLAIILV-DARYGVQTQTRRHSYIASLLG--IKHIVVAINKMD 168 (434)
T ss_dssp EEEEEECCCSGG-------------GHHHHHHHHTTCSEEEEEE-ETTTCSCHHHHHHHHHHHHTT--CCEEEEEEECTT
T ss_pred eEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEE-ECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEcCc
Confidence 699999999541 2234556889999555555 5555443332 234444432 236899999999
Q ss_pred CCCC
Q 045702 230 IMDR 233 (728)
Q Consensus 230 ~~~~ 233 (728)
+.+.
T Consensus 169 l~~~ 172 (434)
T 1zun_B 169 LNGF 172 (434)
T ss_dssp TTTS
T ss_pred CCcc
Confidence 9864
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.66 E-value=6.6e-08 Score=95.57 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh---cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR---QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~---~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
++.++||||+..... +......++..+..|++ ..+. ++++.++.......+ ..+.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQG-LVVLMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEE-EEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccE-EEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 578999999863211 11111244555556664 4454 444555544333322 233343444568899999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.65 E-value=2e-08 Score=98.72 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+|+|+|+.|||||||+++|+|..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35799999999999999999999875
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.65 E-value=4.4e-08 Score=107.42 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=43.5
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLD 229 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 229 (728)
..++||||||.. .+...+..++..+|.+||+| +++.....+. .+.+..+...+.+ .|+|+||+|
T Consensus 66 ~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilVv-da~~g~~~qt-~e~l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 66 RHYAHTDCPGHA-------------DYVKNMITGTAPLDGCILVV-AANDGPMPQT-REHLLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp CEEEEEECSSHH-------------HHHHHHHHTSSCCSEEEEEE-ETTTCSCHHH-HHHHHHHHHTTCCCEEEEEECGG
T ss_pred eEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEEE-ECCCCCCHHH-HHHHHHHHHcCCCeEEEEEECcc
Confidence 368999999953 23445677889999665555 4544443333 3333333334677 689999999
Q ss_pred CCC
Q 045702 230 IMD 232 (728)
Q Consensus 230 ~~~ 232 (728)
+.+
T Consensus 131 l~~ 133 (397)
T 1d2e_A 131 AVQ 133 (397)
T ss_dssp GCS
T ss_pred cCC
Confidence 985
No 176
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.63 E-value=1.1e-07 Score=104.53 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=41.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc-c--cHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL-A--TSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.++||||||.. .+......++..+|.+||++ +++... . +.+.+.+++.+. ..++|+|+||+
T Consensus 82 ~i~iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~ 145 (408)
T 1s0u_A 82 RVSFVDSPGHE-------------TLMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILG--IDKIIIVQNKI 145 (408)
T ss_dssp EEEEEECSSHH-------------HHHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECT
T ss_pred EEEEEECCCHH-------------HHHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEcc
Confidence 58999999932 23344556677789555554 555443 2 223334444433 24799999999
Q ss_pred CCCCCC
Q 045702 229 DIMDRG 234 (728)
Q Consensus 229 D~~~~~ 234 (728)
|+.+..
T Consensus 146 Dl~~~~ 151 (408)
T 1s0u_A 146 DLVDEK 151 (408)
T ss_dssp TSSCTT
T ss_pred CCCCHH
Confidence 998654
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.61 E-value=3.8e-08 Score=115.28 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=47.7
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..++||||||..+ +...+..++..+|.+|+++ ++......+. ..+++.+...+.+.++|+||+|+
T Consensus 77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVv-Da~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 77 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVF-DSSQGVEPQS-ETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp EEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEE-ETTTCSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEE-ECCCCcchhh-HHHHHHHHHcCCCEEEEEECCCc
Confidence 3689999999752 2345678899999655555 4544444333 44445554557899999999999
Q ss_pred CCCC
Q 045702 231 MDRG 234 (728)
Q Consensus 231 ~~~~ 234 (728)
....
T Consensus 142 ~~~~ 145 (691)
T 1dar_A 142 TGAD 145 (691)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 8654
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.60 E-value=6.6e-08 Score=107.98 Aligned_cols=71 Identities=25% Similarity=0.414 Sum_probs=43.7
Q ss_pred EEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---------ccHHHHHHHHHh
Q 045702 144 KISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---------ATSDALQMAREA 214 (728)
Q Consensus 144 ~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~ 214 (728)
.+..+.. .++||||||.. .+...+..++..+|.+||+| +++... .+.+.+.+++.
T Consensus 79 ~~~~~~~-~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVv-da~~g~~~~sf~~~~qt~~~~~~~~~- 142 (458)
T 1f60_A 79 KFETPKY-QVTVIDAPGHR-------------DFIKNMITGTSQADCAILII-AGGVGEFEAGISKDGQTREHALLAFT- 142 (458)
T ss_dssp EEECSSE-EEEEEECCCCT-------------THHHHHHHSSSCCSEEEEEE-ECSHHHHHHHTCTTSHHHHHHHHHHH-
T ss_pred EEecCCc-eEEEEECCCcH-------------HHHHHHHhhhhhCCEEEEEE-eCCcCccccccCcchhHHHHHHHHHH-
Confidence 3444333 69999999954 23345677889999655555 454332 12222333333
Q ss_pred CCCCCc-eEEeeccCCCCC
Q 045702 215 DPTGSR-TIGVITKLDIMD 232 (728)
Q Consensus 215 d~~~~r-ti~VltK~D~~~ 232 (728)
.+.+ +|+|+||+|+.+
T Consensus 143 --~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 143 --LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --TTCCEEEEEEECGGGGT
T ss_pred --cCCCeEEEEEEcccccc
Confidence 3454 899999999984
No 179
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.56 E-value=1.6e-07 Score=97.42 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=53.4
Q ss_pred cCeEEEeCCCCcccCCCCCc-hhHHHHHHHHHHHHhhc--------------CCeEEEEEecCCCCcccHHHHHHHHHhC
Q 045702 151 LNMTLVDLPGITKVPVGDQP-TDIEARIRKMIMAYIRQ--------------ENCIILAVSPANSDLATSDALQMAREAD 215 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~-~~~~~~~~~~~~~yi~~--------------~~~iIL~V~~a~~d~~~~~~l~l~~~~d 215 (728)
+++|++|+||+......... ..+...+......++.. +.+.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 36899999999654322221 23333333333333332 3666777777777787777 78888887
Q ss_pred CCCCceEEeeccCCCCCCCc
Q 045702 216 PTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 216 ~~~~rti~VltK~D~~~~~~ 235 (728)
.. .++|.|+||+|.+...+
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp TT-SEEEEEETTGGGSCHHH
T ss_pred hc-CcEEEEEeccccCCHHH
Confidence 76 89999999999997643
No 180
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.55 E-value=1.2e-07 Score=104.48 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=42.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---ccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---ATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
.++||||||.. .+.......+..+|.+||+| +++... .+.+.+.+++.+. ..++|+|+||+
T Consensus 84 ~i~iiDtPGh~-------------~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~ 147 (410)
T 1kk1_A 84 RVSFIDAPGHE-------------ALMTTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIG--QKNIIIAQNKI 147 (410)
T ss_dssp EEEEEECSSHH-------------HHHHHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred EEEEEECCChH-------------HHHHHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECc
Confidence 58999999932 23345566778889555555 555443 2233344555553 25789999999
Q ss_pred CCCCC
Q 045702 229 DIMDR 233 (728)
Q Consensus 229 D~~~~ 233 (728)
|+.+.
T Consensus 148 Dl~~~ 152 (410)
T 1kk1_A 148 ELVDK 152 (410)
T ss_dssp GGSCH
T ss_pred cCCCH
Confidence 99864
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.54 E-value=1.1e-07 Score=103.14 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=40.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCce-EEeec-cCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRT-IGVIT-KLD 229 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rt-i~Vlt-K~D 229 (728)
.++||||||..+ .+ ..+..+++.+|.+||+|. +.++..+. .+.+..+...+.+. |+|+| |+|
T Consensus 61 ~i~iiDtPGh~~------------f~-~~~~~~~~~aD~ailVvd--~~g~~~qt-~e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 61 NMVFVDAHSYPK------------TL-KSLITALNISDIAVLCIP--PQGLDAHT-GECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp EEEEEECTTTTT------------CH-HHHHHHHHTCSEEEEEEC--TTCCCHHH-HHHHHHHHHTTCCEEEEEECCGGG
T ss_pred EEEEEECCChHH------------HH-HHHHHHHHHCCEEEEEEc--CCCCcHHH-HHHHHHHHHcCCCeEEEEEEeccC
Confidence 489999999752 22 234456789997777766 44554333 33333333335666 99999 999
Q ss_pred C
Q 045702 230 I 230 (728)
Q Consensus 230 ~ 230 (728)
+
T Consensus 125 l 125 (370)
T 2elf_A 125 T 125 (370)
T ss_dssp S
T ss_pred C
Confidence 9
No 182
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.54 E-value=2.1e-07 Score=100.23 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-..+.|+++|.+|||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999974
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.52 E-value=6.9e-08 Score=94.40 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
...|+|+|+.|||||||+++|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 184
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.50 E-value=9.5e-08 Score=106.03 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=42.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC-------cccHHHHHHHHHhCCCC-CceEE
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD-------LATSDALQMAREADPTG-SRTIG 223 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d-------~~~~~~l~l~~~~d~~~-~rti~ 223 (728)
.++||||||..+ +...+..++..+|++||++. ++.+ +..+. .+.+..+...+ .++|+
T Consensus 85 ~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvD-a~~gsfe~~~~~~~qt-~~~~~~~~~~~~~~iiv 149 (435)
T 1jny_A 85 FFTIIDAPGHRD-------------FVKNMITGASQADAAILVVS-AKKGEYEAGMSVEGQT-REHIILAKTMGLDQLIV 149 (435)
T ss_dssp EEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEE-CSTTHHHHHHSTTCHH-HHHHHHHHHTTCTTCEE
T ss_pred EEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEE-CCCCccccccccchHH-HHHHHHHHHcCCCeEEE
Confidence 699999999652 23456678999996666665 4434 33333 33333222223 46899
Q ss_pred eeccCCCCCC
Q 045702 224 VITKLDIMDR 233 (728)
Q Consensus 224 VltK~D~~~~ 233 (728)
|+||+|+.+.
T Consensus 150 viNK~Dl~~~ 159 (435)
T 1jny_A 150 AVNKMDLTEP 159 (435)
T ss_dssp EEECGGGSSS
T ss_pred EEEcccCCCc
Confidence 9999999874
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.50 E-value=1.4e-07 Score=107.40 Aligned_cols=136 Identities=11% Similarity=0.172 Sum_probs=78.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccC--CCCcccChHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL--PGKRFFDFTKVRQEIM 123 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~--~g~~~~d~~~i~~~i~ 123 (728)
..|+|||...+|||||.++|+-.. |... .. +.+-.. .+.+..|+.++.++
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~t------G~i~-~~-------------------G~V~~~~~~~~~~~D~~~~Ere-- 83 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFG------GAIQ-MA-------------------GSVKARKAARHATSDWMAMERE-- 83 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT------TCHH-HH-------------------HHHHHC------------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhc------Cccc-cc-------------------ceeecCccccccccCChHHHHH--
Confidence 359999999999999999997221 1000 00 000000 01123344433321
Q ss_pred HHhhhhcCCCCCcccceEEEEEecCCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcc
Q 045702 124 AETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA 203 (728)
Q Consensus 124 ~~~~~~~g~~~~~s~~~i~l~i~~p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~ 203 (728)
.+-.+....+.+++.+ ..+.||||||..+-. .-+.+.|+-.|++||+| +|..+..
T Consensus 84 --------RGITI~s~~~~~~~~~---~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAvlVv-da~~GV~ 138 (548)
T 3vqt_A 84 --------RGISVTTSVMQFPYRD---RVVNLLDTPGHQDFS-------------EDTYRVLTAVDSALVVI-DAAKGVE 138 (548)
T ss_dssp ------------CTTTEEEEEETT---EEEEEECCCCGGGCS-------------HHHHHHHHSCSEEEEEE-ETTTBSC
T ss_pred --------CCCcEeeceEEEEECC---EEEEEEeCCCcHHHH-------------HHHHHHHHhcCceEEEe-ecCCCcc
Confidence 1223444555555533 368999999976331 23456688899666555 5556666
Q ss_pred cHHHHHHHHHhCCCCCceEEeeccCCCCCCCc
Q 045702 204 TSDALQMAREADPTGSRTIGVITKLDIMDRGT 235 (728)
Q Consensus 204 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 235 (728)
.+. ..+++.+...+.|.|+++||+|.....-
T Consensus 139 ~qT-~~v~~~a~~~~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 139 AQT-RKLMDVCRMRATPVMTFVNKMDREALHP 169 (548)
T ss_dssp HHH-HHHHHHHHHTTCCEEEEEECTTSCCCCH
T ss_pred ccc-HHHHHHHHHhCCceEEEEecccchhcch
Confidence 666 6777888888899999999999976543
No 186
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.50 E-value=7.5e-08 Score=115.15 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=46.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.||||||..+- ...+..|++.+|++|+++ ++......+. ..+++.+...+.+.|+|+||+|+.
T Consensus 99 ~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVv-Da~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DTIEGVCVQT-ETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEE-ETTTBSCHHH-HHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEE-eCCCCCCHHH-HHHHHHHHHcCCCeEEEEECCCcc
Confidence 6899999998632 235678899999655555 5555554444 455555555678999999999997
Q ss_pred C
Q 045702 232 D 232 (728)
Q Consensus 232 ~ 232 (728)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
No 187
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.46 E-value=2.8e-08 Score=107.84 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.+|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 36999999999999999999986
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.45 E-value=1.3e-06 Score=94.17 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g 67 (728)
..+.|+|+|.+|+|||||+++|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.43 E-value=6.4e-07 Score=104.51 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=47.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
..+.||||||..+ +...+..+++.+|.++|++. +...+..+. ..+++.+...+.+.|+|+||+|+
T Consensus 74 ~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt-~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 74 HRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVS-AEAGVQVGT-ERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp EEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCSCHHH-HHHHHHHHHTTCCEEEEEECGGG
T ss_pred EEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEc-CCcccchhH-HHHHHHHHHccCCEEEEecCCch
Confidence 3689999999652 23567788999996666665 555554433 45555555567899999999999
Q ss_pred C
Q 045702 231 M 231 (728)
Q Consensus 231 ~ 231 (728)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 8
No 190
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.41 E-value=2.5e-07 Score=111.18 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=43.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH--HHHHHHHHhCCCCCc-eEEeecc
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS--DALQMAREADPTGSR-TIGVITK 227 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~VltK 227 (728)
..++||||||.. .+...+..++..+|.+||+|. ++.....+ +.+.+++. .+.+ +|+|+||
T Consensus 359 ~kI~IIDTPGHe-------------dF~~~mi~gas~AD~aILVVD-AtdGv~~QTrEhL~ll~~---lgIP~IIVVINK 421 (1289)
T 3avx_A 359 RHYAHVDCPGHA-------------DYVKNMITGAAQMDGAILVVA-ATDGPMPQTREHILLGRQ---VGVPYIIVFLNK 421 (1289)
T ss_dssp CEEEEEECCCHH-------------HHHHHHHHTSCCCSEEEEEEE-TTTCSCTTHHHHHHHHHH---HTCSCEEEEEEC
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCCEEEEEEc-CCccCcHHHHHHHHHHHH---cCCCeEEEEEee
Confidence 368999999943 234566778899996665554 44443333 33344444 3567 7899999
Q ss_pred CCCCC
Q 045702 228 LDIMD 232 (728)
Q Consensus 228 ~D~~~ 232 (728)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99986
No 191
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.40 E-value=6.5e-09 Score=119.57 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
...|++||..++|||||+|+|++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.40 E-value=2.3e-07 Score=99.74 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=26.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccce
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPL 83 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~ 83 (728)
.+|++||.+|+|||||+|+|+|..+.......||.-|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~ 40 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN 40 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECce
Confidence 47999999999999999999997742222224566553
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.39 E-value=3.8e-07 Score=100.10 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+.|++||.+||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3579999999999999999999975
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.39 E-value=9.8e-07 Score=92.91 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=44.1
Q ss_pred cCeEEEeCCCCcccCCC-CCchhHHHHHHHHHHHHhhcCC-------------eEEEEEecCCCCcccHHHHHHHHHhCC
Q 045702 151 LNMTLVDLPGITKVPVG-DQPTDIEARIRKMIMAYIRQEN-------------CIILAVSPANSDLATSDALQMAREADP 216 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~-~~~~~~~~~~~~~~~~yi~~~~-------------~iIL~V~~a~~d~~~~~~l~l~~~~d~ 216 (728)
..|+++||||+...... ..-..+...+......|+.... ++++++.+....+...+ ..+++.+..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 36899999998432110 1112233333344446665443 24444444443465555 577787764
Q ss_pred CCCceEEeeccCCCCCC
Q 045702 217 TGSRTIGVITKLDIMDR 233 (728)
Q Consensus 217 ~~~rti~VltK~D~~~~ 233 (728)
..++++|+||.|+...
T Consensus 155 -~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTL 170 (301)
T ss_dssp -TSCEEEEECCGGGSCH
T ss_pred -cCCEEEEEEeCCCCCH
Confidence 5689999999999864
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.34 E-value=1.1e-07 Score=103.20 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 469999999999999999999864
No 196
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.32 E-value=3.3e-07 Score=102.54 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=36.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---------ccHHHHHHHHHhCCCCCc-e
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---------ATSDALQMAREADPTGSR-T 221 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~~~~r-t 221 (728)
.++||||||.. .+...+..++..+|.+||+|. ++... .+.+.+.+++. .+.+ +
T Consensus 122 ~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~i 184 (467)
T 1r5b_A 122 RFSLLDAPGHK-------------GYVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLART---QGINHL 184 (467)
T ss_dssp EEEECCCCC------------------------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSE
T ss_pred EEEEEECCCcH-------------HHHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHH---cCCCEE
Confidence 68999999964 223445667899996666654 44432 22232333333 3565 8
Q ss_pred EEeeccCCCCCC
Q 045702 222 IGVITKLDIMDR 233 (728)
Q Consensus 222 i~VltK~D~~~~ 233 (728)
|+|+||+|+...
T Consensus 185 ivviNK~Dl~~~ 196 (467)
T 1r5b_A 185 VVVINKMDEPSV 196 (467)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECccCCCc
Confidence 999999999753
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.30 E-value=2.9e-07 Score=106.91 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=50.5
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.++||||||..+- ..-+.+.++-.|.+||+| +|..++..+. ..+++.+...+.|.|+++||+|..
T Consensus 68 ~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVV-Da~~GV~~qT-~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 68 KVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLI-SAKDGVQAQT-RILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp BCCCEECCCSSST-------------HHHHHHHHTTCSEEECCE-ESSCTTCSHH-HHHHHHHHHHTCSCEECCEECCSS
T ss_pred EEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEE-eCCCCCcHHH-HHHHHHHHHcCCCeEEEEeccccc
Confidence 5899999997632 223556788899655555 5666776666 677777777789999999999997
Q ss_pred CCCc
Q 045702 232 DRGT 235 (728)
Q Consensus 232 ~~~~ 235 (728)
...-
T Consensus 133 ~a~~ 136 (638)
T 3j25_A 133 GIDL 136 (638)
T ss_dssp SCCS
T ss_pred cCCH
Confidence 6543
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.29 E-value=1.4e-06 Score=102.42 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=80.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEEEeeeCCCCCCCCccchhhhccCCCCcccChHHHHHHHHH
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMA 124 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i~l~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~ 124 (728)
+.-|+|||...+|||||.++|+-.. |. ++....+. .+.++.|+.+..++
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~g~v~---------------------~~~~~~D~~~~E~e--- 61 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYT------GV-NHKLGEVH---------------------DGAATTDWMVQEQE--- 61 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC------------------------------------------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcCceec---------------------CCCccCCChHHHHH---
Confidence 4579999999999999999998211 11 11111110 12233344333221
Q ss_pred HhhhhcCCCCCcccceEEEEEecCCC----cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC
Q 045702 125 ETNKEAGSNRGVSEKQIGLKISSPNV----LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200 (728)
Q Consensus 125 ~~~~~~g~~~~~s~~~i~l~i~~p~~----~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~ 200 (728)
.+-.+....+.+.+.+... ..++||||||..+- ..-+.+.++-.|.+||+| +|..
T Consensus 62 -------RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvV-Dave 120 (709)
T 4fn5_A 62 -------RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVF-CGTS 120 (709)
T ss_dssp -------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEE-ETTT
T ss_pred -------cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEE-ECCC
Confidence 1223445667777765432 35999999997632 223456788899666555 5556
Q ss_pred CcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 201 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
++..+. ..+++++...+.|.|+|+||+|.....
T Consensus 121 GV~~qT-~~v~~~a~~~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 121 GVEPQS-ETVWRQANKYGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CSCHHH-HHHHHHHHHHTCCEEEEEECSSSTTCC
T ss_pred CCchhH-HHHHHHHHHcCCCeEEEEccccccCcc
Confidence 776666 677787777789999999999997543
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.28 E-value=5.1e-07 Score=97.98 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEE
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLAL 85 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i 85 (728)
-.+|++||.+|+|||||+|+|+|..+.......||.-|...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g 62 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNES 62 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeE
Confidence 35799999999999999999999875222223466666543
No 200
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.22 E-value=4.4e-06 Score=88.21 Aligned_cols=71 Identities=11% Similarity=0.261 Sum_probs=43.6
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccH--HHHHHH---HHhCCCCCceEEee
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATS--DALQMA---READPTGSRTIGVI 225 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~--~~l~l~---~~~d~~~~rti~Vl 225 (728)
..|.||||||--+-.. + .+ +...|.+.++++|+++...+. +... .+..++ +...+ +.++++|.
T Consensus 46 v~LqIWDTAGQErf~~---~-----~l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFE---P-----SY--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCC---C-----SH--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccc---h-----hh--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 3699999999643210 0 01 356789999977766654443 2211 111222 23344 68999999
Q ss_pred ccCCCCCC
Q 045702 226 TKLDIMDR 233 (728)
Q Consensus 226 tK~D~~~~ 233 (728)
||+|+...
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999864
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.21 E-value=1.7e-06 Score=93.45 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=29.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCCCcccCCcccccceEE
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLAL 85 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~Tr~p~~i 85 (728)
.+|++||.+|+|||||+|+|+|..........||..|+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g 41 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG 41 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee
Confidence 4699999999999999999998752122223567777654
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.19 E-value=4.4e-06 Score=89.48 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999854
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.14 E-value=2.6e-05 Score=87.34 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=43.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D~ 230 (728)
++.||||||..... ..+...+.... .++ .++.+ ++|+++..... +...++.+... .+ +++|+||+|.
T Consensus 185 DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~v-llVvDa~~g~~---~~~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 185 EIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNI-VYVMDASIGQA---CEAQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp CEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEE-EEEEETTCCTT---HHHHHHHHHHH-HCCCCEEEECTTS
T ss_pred cEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceE-EEEEecccccc---HHHHHHHHHhh-cCceEEEEeCCcc
Confidence 68999999987421 12222222222 233 67844 55556655432 35556655432 45 5899999999
Q ss_pred CCCCccH
Q 045702 231 MDRGTNA 237 (728)
Q Consensus 231 ~~~~~~~ 237 (728)
...+..+
T Consensus 253 ~~~~g~~ 259 (504)
T 2j37_W 253 HAKGGGA 259 (504)
T ss_dssp CCCCTHH
T ss_pred ccchHHH
Confidence 8665443
No 204
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.09 E-value=6e-06 Score=94.11 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.6
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
-..+.|+|||.+|+|||||+|+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3457899999999999999999999763
No 205
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.07 E-value=8e-07 Score=91.22 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCCCeEEEECCC---------CCCHHHHHHHHhCC
Q 045702 43 ISLPQVAVVGSQ---------SSGKSSVLEALVGR 68 (728)
Q Consensus 43 ~~lP~IvVvG~~---------ssGKSSllnaL~g~ 68 (728)
....+|+|||+. |+|||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 345689999999 99999999999984
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.06 E-value=1e-05 Score=84.16 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
-.+|+|||.+|+|||||+|+|+|.....+
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~ 148 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKT 148 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeec
Confidence 45899999999999999999999875343
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.05 E-value=2.9e-05 Score=85.32 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=49.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ......+..+ .. +..++ .+++|++|..+ +++...++.+.+....+.+|+||+|..
T Consensus 184 DvVIIDTaGrl~~d-----~~lm~el~~i-~~-~~~pd-~vlLVvDA~~g---q~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 184 DIIIVDTAGRHKED-----KALIEEMKQI-SN-VIHPH-EVILVIDGTIG---QQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp SEEEEECCCCSSCC-----HHHHHHHHHH-HH-HHCCS-EEEEEEEGGGG---GGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred CEEEEECCCcccch-----HHHHHHHHHH-HH-hhcCc-eEEEEEeCCCc---hhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 68999999976421 1222223222 22 33567 45555666543 455777788876667788999999998
Q ss_pred CCCccHHHhHc
Q 045702 232 DRGTNACNFLL 242 (728)
Q Consensus 232 ~~~~~~~~~l~ 242 (728)
..+..+..+..
T Consensus 253 ~~gG~~ls~~~ 263 (443)
T 3dm5_A 253 AKGGGALSAVA 263 (443)
T ss_dssp SSHHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77655444433
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.03 E-value=1.7e-05 Score=86.83 Aligned_cols=72 Identities=24% Similarity=0.305 Sum_probs=42.9
Q ss_pred CCCcCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeecc
Q 045702 148 PNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 148 p~~~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
+..++++++|+||+.... ..+.+.+..+ -+...+.. +. .+... ...++ ..+++.+...+.|+++|+||
T Consensus 117 ~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~-~~-lS~G~-~~kqr-v~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 117 PNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFF-II-ISATR-FKKND-IDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp SSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEE-EE-EESSC-CCHHH-HHHHHHHHHTTCEEEEEECC
T ss_pred cccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCe-EE-eCCCC-ccHHH-HHHHHHHHhcCCCeEEEEec
Confidence 334579999999986421 1122222211 13333433 33 44432 23344 77888887778999999999
Q ss_pred CCCC
Q 045702 228 LDIM 231 (728)
Q Consensus 228 ~D~~ 231 (728)
+|++
T Consensus 185 pdll 188 (413)
T 1tq4_A 185 VDSD 188 (413)
T ss_dssp HHHH
T ss_pred Cccc
Confidence 9985
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.00 E-value=4.9e-06 Score=90.37 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCCccc-CCcccccceEE
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRG-CDICTRRPLAL 85 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~~lP~~-~~~~Tr~p~~i 85 (728)
-..|++||.+|||||||+|+|+|..+.+.+ .-.||+.|+.-
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G 61 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA 61 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee
Confidence 458999999999999999999998752333 33567777654
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.96 E-value=3.7e-05 Score=82.12 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-..|+++|.+|||||||+|+|+|.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999964
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.92 E-value=3.3e-05 Score=78.88 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHh-----CCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALV-----GRDFL 71 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~-----g~~~l 71 (728)
..+.++++|..|+||||++++|. |.+++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 45678999999999999999998 66543
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.73 E-value=2.3e-05 Score=80.67 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=23.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
.+|+|||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999875
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.66 E-value=7e-05 Score=82.56 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=44.4
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHH-HHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCC-CceEEeeccC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIM-AYIRQENCIILAVSPANSDLATSDALQMAREADPTG-SRTIGVITKL 228 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~-~rti~VltK~ 228 (728)
.++.||||||.... + ......+.. ..+..++. +++|+++... +++...++.+.+.. ..+.+|+||+
T Consensus 181 ~D~vIIDT~G~~~~-------~-~~l~~~l~~i~~~~~~d~-vllVvda~~g---~~~~~~~~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 181 ADVLIIDTAGRHKE-------E-KGLLEEMKQIKEITNPDE-IILVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp CSEEEEECCCSCSS-------H-HHHHHHHHHTTSSSCCSE-EEEEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEECS
T ss_pred CCEEEEcCCCCccc-------c-HHHHHHHHHHHHHhcCcc-eeEEeecccc---HHHHHHHHHHhhcccCCeEEEEeCC
Confidence 37899999998642 1 112222211 11225774 5555555443 24566677776533 3389999999
Q ss_pred CCCCCCccHHH
Q 045702 229 DIMDRGTNACN 239 (728)
Q Consensus 229 D~~~~~~~~~~ 239 (728)
|....+..+..
T Consensus 249 D~~~~~g~~l~ 259 (432)
T 2v3c_C 249 DGSAKGGGALS 259 (432)
T ss_dssp SSCSTTHHHHH
T ss_pred CCccchHHHHH
Confidence 99765543333
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.61 E-value=0.00011 Score=80.74 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=45.4
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
+++.||||||....+. .+ ..-..+..+ ...+ .++.++ +|+++... +++...++.+.+....+.+|+||+|.
T Consensus 180 ~DvvIIDTaGr~~~~~--d~-~lm~el~~i-~~~~-~pd~vl-LVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGE--ET-KLLEEMKEM-YDVL-KPDDVI-LVIDASIG---QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp CSEEEEEECCCSSSCC--TT-HHHHHHHHH-HHHH-CCSEEE-EEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred CCEEEEECCCCccccC--CH-HHHHHHHHH-HHhh-CCcceE-EEEeCccc---hHHHHHHHHHhcccCCcEEEEecccc
Confidence 4789999999754111 11 222233332 2233 456444 44555432 34466667666555678999999999
Q ss_pred CCCCccHH
Q 045702 231 MDRGTNAC 238 (728)
Q Consensus 231 ~~~~~~~~ 238 (728)
...+..+.
T Consensus 251 ~a~~G~al 258 (433)
T 3kl4_A 251 TAKGGGAL 258 (433)
T ss_dssp CSCHHHHH
T ss_pred cccchHHH
Confidence 86654443
No 215
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.48 E-value=6.7e-05 Score=74.40 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|.|+|+|..|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999975
No 216
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.35 E-value=0.0025 Score=70.12 Aligned_cols=74 Identities=24% Similarity=0.193 Sum_probs=42.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHH-HHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMI-MAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~-~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
++.||||||..... .. ....+. ..++..++.++|++ ++... +++...++.+.+.-.-+-+|+||+|.
T Consensus 185 D~VIIDTpG~l~~~-----~~---l~~~L~~~~~~~~p~~vllVv-da~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 185 DVLLVDTAGRLHVD-----EA---MMDEIKQVHASINPVETLFVV-DAMTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp SEEEEECCCCCTTC-----HH---HHHHHHHHHHHSCCSEEEEEE-ETTBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CEEEEECCCccccc-----HH---HHHHHHHHHHhhcCcceeEEe-ecchh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 68999999976321 11 222221 13344677555544 45433 34566666665422225579999999
Q ss_pred CCCCccH
Q 045702 231 MDRGTNA 237 (728)
Q Consensus 231 ~~~~~~~ 237 (728)
...+..+
T Consensus 253 ~~~~g~~ 259 (433)
T 2xxa_A 253 DARGGAA 259 (433)
T ss_dssp SSCCTHH
T ss_pred CccHHHH
Confidence 7665433
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.29 E-value=0.001 Score=69.50 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=49.8
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhh--cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIR--QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKL 228 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 228 (728)
+++.|+||||..... ...+.++. ..+. .++ -+++|+++..+ ..++.++++.+.. -...-+|+||.
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~-~~~lVl~at~~--~~~~~~~~~~~~~-l~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSI-QSFLVLSATAK--YEDMKHIVKRFSS-VPVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTE-EEEEEEETTBC--HHHHHHHTTTTSS-SCCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCC-eEEEEEECCCC--HHHHHHHHHHHhc-CCCCEEEEeCC
Confidence 478999999987331 11222322 2333 244 34555555543 2344455555553 23456788999
Q ss_pred CCCCCCccHHHhHcCCCcccCCceeEeecC
Q 045702 229 DIMDRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 229 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
|....+.....++.....| +-|+++-.+
T Consensus 250 D~~~~~g~~~~~~~~~~~p--i~~i~~ge~ 277 (296)
T 2px0_A 250 DETTSLGSVFNILAESKIG--VGFMTNGQN 277 (296)
T ss_dssp TTCSCCHHHHHHHHTCSCC--CSEECCSSC
T ss_pred CcccchhHHHHHHHHHCcC--EEEEECCCC
Confidence 9987665555555433233 345554333
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.28 E-value=0.0016 Score=68.13 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=44.3
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCc-eEEeeccCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSR-TIGVITKLDI 230 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D~ 230 (728)
++.||||||..... ....+...+..+ . .+..++.++|++ ++.. .+++...++.+.+. .+ +.+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~---~~~~l~~el~~i-~-~~~~~d~vllVv-da~~---g~~~~~~~~~~~~~-~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYG---EEAALLEEMKNI-Y-EAIKPDEVTLVI-DASI---GQKAYDLASKFNQA-SKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTT---CHHHHHHHHHHH-H-HHHCCSEEEEEE-EGGG---GGGHHHHHHHHHHT-CTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccc---cHHHHHHHHHHH-H-HHhcCCEEEEEe-eCCc---hHHHHHHHHHHHhh-CCCCEEEEeCCCC
Confidence 68999999987410 001111112211 2 233577555555 4433 24556677776653 45 7889999998
Q ss_pred CCCCccHHHhH
Q 045702 231 MDRGTNACNFL 241 (728)
Q Consensus 231 ~~~~~~~~~~l 241 (728)
...+.....+.
T Consensus 252 ~~~~g~~~~~~ 262 (297)
T 1j8m_F 252 TAKGGGALSAV 262 (297)
T ss_dssp CTTHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 76554333333
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.27 E-value=0.00089 Score=70.21 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=53.8
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.++||+|..... ......+..+...+.+..+..++ .+|++.++... ++++..++.+......+++|+||.|..
T Consensus 186 d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~-~~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPK-EVWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCS-EEEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCC-eEEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 46799999986321 01122333333334444455677 44445555433 344556665543334689999999987
Q ss_pred CCCccHHHhHcCCCcccCCceeEeecC
Q 045702 232 DRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
..+.....+... ..+.+-|+++-.+
T Consensus 261 a~gg~~l~i~~~--~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 261 AKGGVLIPIVRT--LKVPIKFVGVGEG 285 (304)
T ss_dssp CCCTTHHHHHHH--HCCCEEEEECSSS
T ss_pred ccccHHHHHHHH--HCCCeEEEeCCCC
Confidence 666544433222 1233455655443
No 220
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.24 E-value=0.00087 Score=73.79 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.--|+|+|.+++|||+|||.|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 346899999999999999999974
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.17 E-value=0.0021 Score=71.38 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=46.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHH---HHHHhh-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeecc
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKM---IMAYIR-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITK 227 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~---~~~yi~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 227 (728)
++.||||+|..... ......+.++ ++.+.. .++.++|++ ++..+ ++++..++.+.....-+.+|+||
T Consensus 377 DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvL-DattG---q~al~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 377 DVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTI-DASTG---QNAVSQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp SEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEE-EGGGT---HHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEe-cCccc---HHHHHHHHHHHhhcCCCEEEEEc
Confidence 57899999986331 1122222222 221211 355455544 44332 56677777776544568899999
Q ss_pred CCCCCCCccHHHhH
Q 045702 228 LDIMDRGTNACNFL 241 (728)
Q Consensus 228 ~D~~~~~~~~~~~l 241 (728)
+|-...+.....++
T Consensus 448 LD~takgG~~lsi~ 461 (503)
T 2yhs_A 448 LDGTAKGGVIFSVA 461 (503)
T ss_dssp GGGCSCCTHHHHHH
T ss_pred CCCcccccHHHHHH
Confidence 99876666555444
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.93 E-value=0.0026 Score=67.38 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=45.1
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.++||+|...... .....+..+.+ .+ .++-.++++. +.. .+++...++.+.....-+++|+||.|..
T Consensus 213 d~vliDtaG~~~~~~-----~l~~eL~~i~r-al-~~de~llvLD-a~t---~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETNR-----NLMDEMKKIAR-VT-KPNLVIFVGD-ALA---GNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTTT-----CHHHHHHHHHH-HH-CCSEEEEEEE-GGG---TTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHHH-----HHHHHHHHHHH-Hh-cCCCCEEEEe-cHH---HHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 567899999864321 12223333322 22 3564455544 332 2566777877765556789999999986
Q ss_pred CCCccHHH
Q 045702 232 DRGTNACN 239 (728)
Q Consensus 232 ~~~~~~~~ 239 (728)
..+.....
T Consensus 282 a~~G~~l~ 289 (328)
T 3e70_C 282 ARGGAALS 289 (328)
T ss_dssp SCCHHHHH
T ss_pred cchhHHHH
Confidence 65544433
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.86 E-value=0.00034 Score=73.43 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=51.0
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh----h-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEee
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI----R-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVI 225 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi----~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 225 (728)
+++.|+||||.... ...+...+..+ ...+ . .++. +++|+++. ..++++..++.+.....-+-+|+
T Consensus 187 ~dvvIiDtpg~~~~-----~~~l~~eL~~l-~~~i~~~i~~~p~~-vllVlda~---t~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 187 KDVVIIDTAGRLHT-----KKNLMEELRKV-HRVVKKKIPDAPHE-TLLVIDAT---TGQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp CSEEEEEECCCCSC-----HHHHHHHHHHH-HHHGGGTCTTCCSE-EEEEEEGG---GHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCEEEEECCCchhh-----HHHHHHHHHHH-HHHHhhccCCCCcE-EEEEEECC---CCHHHHHHHHHHHhcCCCCEEEE
Confidence 46899999996321 11222222222 2222 2 3564 44555554 23455666666544334567889
Q ss_pred ccCCCCCCCccHHHhHcCCCcccCCceeEeecC
Q 045702 226 TKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNR 258 (728)
Q Consensus 226 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~r 258 (728)
||.|....+..+..+..... +.+-|+++-.+
T Consensus 257 Tk~D~~~~gG~~l~~~~~~~--~Pi~~i~~Ge~ 287 (306)
T 1vma_A 257 TKLDGTAKGGITLAIARELG--IPIKFIGVGEK 287 (306)
T ss_dssp ECGGGCSCTTHHHHHHHHHC--CCEEEEECSSS
T ss_pred eCCCCccchHHHHHHHHHHC--CCEEEEeCCCC
Confidence 99999877765544433221 23455555444
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.66 E-value=0.055 Score=56.90 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=44.4
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHh----h-cCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeec
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYI----R-QENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVIT 226 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi----~-~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 226 (728)
++.||||||..... ......+.. +...+ . .++.+ ++|+++... ++++..++.+.+...-+-+|+|
T Consensus 193 D~VIIDTpg~l~~~-----~~l~~eL~~-~~~vi~~~~p~~~d~v-llVl~a~~~---~~~l~~~~~~~~~~~i~GvVlt 262 (320)
T 1zu4_A 193 DLLLIDTAGRLQNK-----TNLMAELEK-MNKIIQQVEKSAPHEV-LLVIDATTG---QNGVIQAEEFSKVADVSGIILT 262 (320)
T ss_dssp SEEEEECCCCGGGH-----HHHHHHHHH-HHHHHHTTCTTCCSEE-EEEEEGGGT---HHHHHHHHHHTTTSCCCEEEEE
T ss_pred CEEEEcCCCccccc-----HHHHHHHHH-HHHHHhcccCCCCceE-EEEEECCCc---HHHHHHHHHHhhcCCCcEEEEe
Confidence 78999999976431 011111111 11222 2 35644 455555432 5567777777765445557899
Q ss_pred cCCCCCCCccHHHhH
Q 045702 227 KLDIMDRGTNACNFL 241 (728)
Q Consensus 227 K~D~~~~~~~~~~~l 241 (728)
|+|....+..+..++
T Consensus 263 k~d~~~~~g~~~~~~ 277 (320)
T 1zu4_A 263 KMDSTSKGGIGLAIK 277 (320)
T ss_dssp CGGGCSCTTHHHHHH
T ss_pred CCCCCCchhHHHHHH
Confidence 999876655444433
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.59 E-value=0.0045 Score=67.74 Aligned_cols=77 Identities=26% Similarity=0.300 Sum_probs=43.6
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
++.||||||..... ...-..+..+ ... -.++.++|++ ++.. .+++...++.+.+.-..+.+|+||+|..
T Consensus 182 DvVIIDTaG~l~~d-----~~l~~el~~i-~~~-~~pd~vlLVv-Da~t---gq~av~~a~~f~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 182 DLILVDTAGRLQID-----EPLMGELARL-KEV-LGPDEVLLVL-DAMT---GQEALSVARAFDEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp SEEEEECCCCSSCC-----HHHHHHHHHH-HHH-HCCSEEEEEE-EGGG---TTHHHHHHHHHHHHTCCCEEEEESGGGC
T ss_pred CEEEEcCCCccccc-----HHHHHHHHHh-hhc-cCCceEEEEE-eccc---hHHHHHHHHHHHhcCCceEEEEeCcCCc
Confidence 68999999976331 1111111111 222 2567555554 4432 2566777777765334477899999987
Q ss_pred CCCccHHH
Q 045702 232 DRGTNACN 239 (728)
Q Consensus 232 ~~~~~~~~ 239 (728)
..+..+..
T Consensus 251 ~~~g~als 258 (425)
T 2ffh_A 251 ARGGAALS 258 (425)
T ss_dssp SSCHHHHH
T ss_pred ccHHHHHH
Confidence 66544433
No 226
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.038 Score=59.02 Aligned_cols=85 Identities=24% Similarity=0.206 Sum_probs=47.0
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
+..++||.|+.... ...+.++..+...+.+..+..++-++|++. +.... |+...++.+......+++|+||.|-.
T Consensus 242 d~~lldt~Gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 35789999986431 111123332333344445566775666665 44333 22333444433234689999999987
Q ss_pred CCCccHHHhH
Q 045702 232 DRGTNACNFL 241 (728)
Q Consensus 232 ~~~~~~~~~l 241 (728)
..+.....++
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7665554433
No 227
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.80 E-value=0.016 Score=60.26 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=43.9
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDI 230 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 230 (728)
+++.||||||.... + ......+..+.. .+ .++.+++ |+++.. .+++...++.+.+.-.-+-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~----d-~~~~~~l~~~~~-~~-~~~~~~l-v~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQI----D-EPLMGELARLKE-VL-GPDEVLL-VLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSC----C-HHHHHHHHHHHH-HH-CCSEEEE-EEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCccc----c-HHHHHHHHHHhh-hc-CCCEEEE-EEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 37899999997633 1 111122222222 22 4665554 444432 255566666665432335578999998
Q ss_pred CCCCccHHHhH
Q 045702 231 MDRGTNACNFL 241 (728)
Q Consensus 231 ~~~~~~~~~~l 241 (728)
...+..+..++
T Consensus 250 ~~~~g~~~~~~ 260 (295)
T 1ls1_A 250 DARGGAALSAR 260 (295)
T ss_dssp CSSCHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 76665444444
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.77 E-value=0.064 Score=55.90 Aligned_cols=84 Identities=24% Similarity=0.192 Sum_probs=44.7
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
+..++||.|+.... ...+.++..+...+.+..+.+++-++|++. +...+. +...++.+......+++++||.|-.
T Consensus 185 d~~lldt~gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD---~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLN---MLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCC-HHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGG---GHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcch-hHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcC---HHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 35789999986431 011122222222233334456775566665 544332 2333444433234689999999987
Q ss_pred CCCccHHHh
Q 045702 232 DRGTNACNF 240 (728)
Q Consensus 232 ~~~~~~~~~ 240 (728)
..+.....+
T Consensus 260 ~~~g~~l~~ 268 (302)
T 3b9q_A 260 ARGGCVVSV 268 (302)
T ss_dssp SCTHHHHHH
T ss_pred CccChheeh
Confidence 666554433
No 229
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.34 E-value=0.04 Score=60.41 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.5
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
--|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 357899999999999999776
No 230
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.29 E-value=0.018 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|+++|+.|||||||+++|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999975
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.14 E-value=0.16 Score=48.95 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=37.1
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCC-----CCceEEee
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPT-----GSRTIGVI 225 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~-----~~rti~Vl 225 (728)
.++.|||+||... ..+...+..+|.+|+++.+...+ ..+..+++.+... ..+..+|+
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLD---FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTT---HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHH---HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3789999998551 12334566788665555544332 3334444444321 34668999
Q ss_pred ccCCCC
Q 045702 226 TKLDIM 231 (728)
Q Consensus 226 tK~D~~ 231 (728)
|++|..
T Consensus 138 N~~~~~ 143 (206)
T 4dzz_A 138 TRKIEM 143 (206)
T ss_dssp CSBCTT
T ss_pred eccCCC
Confidence 999854
No 232
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.07 E-value=0.02 Score=55.28 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=25.6
Q ss_pred EEEECCCCCCHHHHHHHHhCCC--CCcccCCcccccc
Q 045702 48 VAVVGSQSSGKSSVLEALVGRD--FLPRGCDICTRRP 82 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~--~lP~~~~~~Tr~p 82 (728)
|||+|+.||||+||+++|+... -+......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233344566655
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.75 E-value=0.026 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.73 E-value=0.026 Score=53.84 Aligned_cols=22 Identities=14% Similarity=0.514 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|+.|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.71 E-value=0.041 Score=58.66 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..|||||||||+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999974
No 236
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.60 E-value=0.032 Score=54.91 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRDF 70 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~~ 70 (728)
..+.|+|+|..|||||||+++|++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999997643
No 237
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.52 E-value=0.029 Score=54.84 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++++|+.|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.50 E-value=0.033 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.27 E-value=0.041 Score=55.20 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999974
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.19 E-value=0.05 Score=56.66 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=22.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++++|..|||||||||+|.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 368999999999999999999975
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.18 E-value=0.046 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|+.|||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.16 E-value=0.036 Score=54.97 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-++|+|+.|||||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999963
No 243
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.14 E-value=0.052 Score=55.51 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999974
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.13 E-value=0.045 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999986
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.06 E-value=0.038 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 246
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.02 E-value=0.043 Score=54.56 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999974
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.00 E-value=0.019 Score=60.04 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++++|.+|||||||||+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999975
No 248
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.97 E-value=0.055 Score=57.27 Aligned_cols=69 Identities=17% Similarity=0.382 Sum_probs=48.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC---------CCcccHHHHHHHHHhC----CC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN---------SDLATSDALQMAREAD----PT 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~l~~~~d----~~ 217 (728)
..+.+|||+|- +..+.++..|.+.++++|+++..+. ..-.-.+++.++..+. ..
T Consensus 161 v~l~iwDtaGQ-------------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 161 IPFHLIDVGGQ-------------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CEEEEEECCSC-------------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeccccCCCc-------------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 46999999992 3678899999999998888876541 1111223444444432 24
Q ss_pred CCceEEeeccCCCCC
Q 045702 218 GSRTIGVITKLDIMD 232 (728)
Q Consensus 218 ~~rti~VltK~D~~~ 232 (728)
..++|+|+||+|+..
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 689999999999964
No 249
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.90 E-value=0.041 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3799999999999999999986
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.90 E-value=0.051 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.85 E-value=0.042 Score=54.30 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999995
No 252
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.77 E-value=0.039 Score=57.49 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=40.9
Q ss_pred CeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCC
Q 045702 152 NMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIM 231 (728)
Q Consensus 152 ~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 231 (728)
.+.+||| .- ..+.+...|++++|++|+++...+.+........++..+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qe-------------r~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LH-------------RKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CC-------------CSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cc-------------ccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 6899998 11 12234456999999666665544333222222233333333478999999999997
Q ss_pred CC
Q 045702 232 DR 233 (728)
Q Consensus 232 ~~ 233 (728)
+.
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.76 E-value=0.038 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|.++||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 254
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.74 E-value=0.056 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999974
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.71 E-value=0.057 Score=54.18 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.65 E-value=0.057 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.60 E-value=0.058 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|.|+|+|..|||||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 688999999999999999999975
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.60 E-value=0.057 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999974
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.59 E-value=0.059 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.59 E-value=0.058 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 261
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.54 E-value=0.058 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 262
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.43 E-value=0.062 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 263
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.41 E-value=0.062 Score=56.59 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=48.1
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecC---------CCCcccHHHHHHHHHhCC----C
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPA---------NSDLATSDALQMAREADP----T 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a---------~~d~~~~~~l~l~~~~d~----~ 217 (728)
..+.+|||.|- +..+.++..|.+.++++|+++.-+ +..-.-.+++.+++.+.. .
T Consensus 167 v~l~iwDtgGQ-------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 167 VIFRMVDVGGQ-------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EEEEEEEECCS-------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEcCCc-------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 46899999993 366788889999999888888422 111122344555555532 4
Q ss_pred CCceEEeeccCCCCC
Q 045702 218 GSRTIGVITKLDIMD 232 (728)
Q Consensus 218 ~~rti~VltK~D~~~ 232 (728)
..++++|+||+|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 689999999999964
No 264
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.41 E-value=0.066 Score=57.31 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|+.|||||||+++|+|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999996
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.40 E-value=0.055 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|+|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999973
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.40 E-value=0.064 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 267
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.33 E-value=0.065 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 268
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.31 E-value=0.066 Score=54.64 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999974
No 269
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.28 E-value=0.067 Score=54.35 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.26 E-value=0.069 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++++|..|||||||++++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 489999999999999998764
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.21 E-value=0.06 Score=56.90 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|+.|||||||+++|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3999999999999999999996
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.20 E-value=0.07 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 273
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.20 E-value=0.054 Score=58.02 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=43.2
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCC---------cccHHHHHHHHHhCC----C
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD---------LATSDALQMAREADP----T 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~l~~~~d~----~ 217 (728)
..+.+|||+|-. ..+.++..|....+++|+++..++-| -.-.++..++..+.. .
T Consensus 201 ~~l~i~Dt~Gq~-------------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 201 VPFKMVDVGGQR-------------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eEEEEEeccchh-------------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 468999999943 45567788999999888877665422 112234445544422 3
Q ss_pred CCceEEeeccCCCC
Q 045702 218 GSRTIGVITKLDIM 231 (728)
Q Consensus 218 ~~rti~VltK~D~~ 231 (728)
+.++|+|+||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 68999999999996
No 274
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.13 E-value=0.07 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999974
No 275
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.06 E-value=0.075 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.06 E-value=0.072 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.04 E-value=0.073 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999974
No 278
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.92 E-value=0.077 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 279
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.92 E-value=0.078 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999974
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.89 E-value=0.069 Score=59.91 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccCCccc
Q 045702 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~~lP~~~~~~T 79 (728)
|+|+|+.||||||++++|+|. +|.+.+.+|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 999999999999999999985 354444443
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.82 E-value=0.067 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|+.||||||++++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999985
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.77 E-value=0.063 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 283
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=91.54 E-value=0.056 Score=57.67 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=47.6
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCc---------ccHHHHHHHHHhCC----C
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDL---------ATSDALQMAREADP----T 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~l~~~~d~----~ 217 (728)
..+.+|||+|-. ..+.++..|.+.++++|+|+..++-|- .-.++..++..+.. .
T Consensus 193 ~~l~iwDt~GQe-------------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 193 LHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp EEEEEEEECCSG-------------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeEEEEeCCCch-------------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 468999999943 345677789999998888886654321 22344555554432 4
Q ss_pred CCceEEeeccCCCC
Q 045702 218 GSRTIGVITKLDIM 231 (728)
Q Consensus 218 ~~rti~VltK~D~~ 231 (728)
+.++|+|+||+|+.
T Consensus 260 ~~piiLv~NK~DL~ 273 (353)
T 1cip_A 260 DTSIILFLNKKDLF 273 (353)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCcEEEEEECcCch
Confidence 68999999999995
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.50 E-value=0.08 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.|+++|..||||||+++.|.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999863
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.44 E-value=0.081 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|.++||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.44 E-value=0.079 Score=55.22 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999985
No 287
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.34 E-value=0.098 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
.++++|+.+||||||++.|+|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 58999999999999999999984 64
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.32 E-value=0.06 Score=52.88 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
++++|+.+||||||++.|+|.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999997
No 289
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.31 E-value=0.045 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 290
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.27 E-value=0.12 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++++|..|||||||+|+|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 368999999999999999999 53
No 291
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.20 E-value=0.081 Score=50.15 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-.+|+|+.+||||||++||.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999999864
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.07 E-value=0.091 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|+++|..|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999764
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.07 E-value=0.091 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|+++|.++||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 294
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.98 E-value=0.078 Score=55.33 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|+|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999974
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.98 E-value=0.12 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.6
Q ss_pred CeEEEECCCCCCHHHHHHHHh---CCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALV---GRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~---g~~~ 70 (728)
..|+|+|..||||||+++.|. |...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 479999999999999999999 8753
No 296
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.82 E-value=0.11 Score=53.92 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999974
No 297
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.65 E-value=0.26 Score=50.67 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
.....+..++..+| +|+.|++|........ ..+.+.+ .+++.++|+||+|+.+.
T Consensus 12 ka~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 12 KARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 34567788999999 6666667766555432 2233333 47899999999999863
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.60 E-value=0.1 Score=54.64 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|..|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5789999999999999999985
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.56 E-value=0.13 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|+|+|.+||||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999753
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.46 E-value=0.087 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.2
Q ss_pred eEEEECCCCCCHHHHHHHHh-CC
Q 045702 47 QVAVVGSQSSGKSSVLEALV-GR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~-g~ 68 (728)
-|+++|+.+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 301
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.46 E-value=0.15 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.7
Q ss_pred CeEEEECCCCCCHHHHHHHH
Q 045702 46 PQVAVVGSQSSGKSSVLEAL 65 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL 65 (728)
+-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.44 E-value=0.1 Score=55.61 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999986
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.40 E-value=0.12 Score=49.99 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999985
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.27 E-value=0.12 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|.++|||||+.+.|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 305
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.19 E-value=0.14 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58999999999999999999975
No 306
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.15 E-value=0.15 Score=50.00 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCcccC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLPRGC 75 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP~~~ 75 (728)
-++++|+.+||||||+..|+|.-..|.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~ 55 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEE 55 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 48999999999999999999854334433
No 307
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.94 E-value=0.15 Score=47.00 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.2
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
.-.+|+|+.+|||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999986
No 308
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.94 E-value=0.15 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999975
No 309
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.81 E-value=0.09 Score=54.74 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHhhcCCeEEEEEecCC-CCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 180 MIMAYIRQENCIILAVSPAN-SDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 180 ~~~~yi~~~~~iIL~V~~a~-~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+.+.|+.+.|.+++ |++++ .+.......+++..+...+.+.++|+||+|+.+..
T Consensus 72 l~r~~~~naD~vli-V~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 72 LIRPKVANVDRVII-VETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EETTEEESCCEEEE-EECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred HhHHHHHhcCEEEE-EEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence 34468999995554 44554 33333322233333333578999999999998653
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.79 E-value=0.15 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-++++|+.+|||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999975
No 311
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.69 E-value=0.17 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999975
No 312
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.68 E-value=0.19 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999963
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.65 E-value=0.22 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|+|+|.++||||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 314
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.64 E-value=0.17 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999999974
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=89.63 E-value=0.14 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..+||||||.++|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 316
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.60 E-value=0.17 Score=54.37 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-++++|+.+||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48999999999999999999975
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.53 E-value=0.22 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|.|+|+|.++||||||++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999863
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.50 E-value=0.16 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 319
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.44 E-value=0.15 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 320
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.43 E-value=0.17 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999975
No 321
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.42 E-value=0.22 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-++++|++|+|||||+.+|.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 322
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.27 E-value=0.13 Score=54.91 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.++|+|..|||||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999973
No 323
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.26 E-value=0.19 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999975
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.08 E-value=0.15 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|+.||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999985
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.91 E-value=0.16 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.84 E-value=0.22 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|..+|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.76 E-value=0.18 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|..+|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.72 E-value=0.23 Score=46.59 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.67 E-value=0.18 Score=48.64 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+++|.+||||||+.+.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.53 E-value=0.22 Score=48.18 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCCCCCCCC-eEEEECCCCCCHHHHHHHHhCC
Q 045702 38 GELSKISLP-QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 38 g~~~~~~lP-~IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.-..+.-+ .|+|+|.++|||||+.+.|.+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 433344444 5789999999999999999985
No 331
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.51 E-value=0.16 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999999975
No 332
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.46 E-value=0.17 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 333
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.46 E-value=0.38 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 334
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.40 E-value=0.28 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.524 Sum_probs=22.4
Q ss_pred CeEEEECCCCCCHHHHHHHHh---CCCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALV---GRDF 70 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~---g~~~ 70 (728)
..|+++|..||||||+++.|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 469999999999999999999 8754
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.25 E-value=0.27 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|..||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 336
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=88.22 E-value=0.22 Score=53.86 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=46.7
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCC---------CcccHHHHHHHHHhC----CC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS---------DLATSDALQMAREAD----PT 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~---------d~~~~~~l~l~~~~d----~~ 217 (728)
..+.||||+|-. ..+.++..|.+.++++|+|+...+- .-.-.++..++..+. ..
T Consensus 217 v~l~iwDtaGQe-------------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQR-------------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCSG-------------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchhh-------------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 478999999943 3456778899999988887765541 111223444555442 24
Q ss_pred CCceEEeeccCCCC
Q 045702 218 GSRTIGVITKLDIM 231 (728)
Q Consensus 218 ~~rti~VltK~D~~ 231 (728)
..++|+|+||+|+.
T Consensus 284 ~~piiLvgNK~DL~ 297 (402)
T 1azs_C 284 TISVILFLNKQDLL 297 (402)
T ss_dssp SCCEEEEEECHHHH
T ss_pred CCeEEEEEEChhhh
Confidence 67899999999985
No 337
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.07 E-value=0.22 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+|||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999963
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.06 E-value=0.2 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+|+|..+|||||+++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 339
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.02 E-value=0.26 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|+++|.+||||||+.++|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.88 E-value=0.26 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++++|+.+||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 341
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.86 E-value=0.14 Score=53.68 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
+|-++|+|..||||||||+.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999863
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.83 E-value=0.19 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.-+.++|+|+.+||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34679999999999999999999974
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.82 E-value=0.19 Score=49.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 344
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.76 E-value=0.15 Score=47.02 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-.-++++|+.++|||+|+++|.|.-
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999999853
No 345
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.71 E-value=0.26 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.2
Q ss_pred CCCeEEEECCCCCCHHHHHHHHh
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~ 66 (728)
+..-.+|+|+.||||||+++||+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33468899999999999999998
No 346
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=87.60 E-value=0.16 Score=54.02 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=45.4
Q ss_pred cCeEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCC--------CCc-ccHHHHHHHHHhC----CC
Q 045702 151 LNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN--------SDL-ATSDALQMAREAD----PT 217 (728)
Q Consensus 151 ~~LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~--------~d~-~~~~~l~l~~~~d----~~ 217 (728)
..+.+|||+|-. ..+.++..|.+.++++|+|+.-.. .+. .-.++..+...+. ..
T Consensus 183 v~l~iwDtaGQe-------------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 183 EVYRLFDVGGQR-------------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 249 (354)
T ss_dssp -EEEEEEECCST-------------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred eeeEEEECCCch-------------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence 469999999943 345677789999998888776431 111 1223344444442 24
Q ss_pred CCceEEeeccCCCCC
Q 045702 218 GSRTIGVITKLDIMD 232 (728)
Q Consensus 218 ~~rti~VltK~D~~~ 232 (728)
..++|+|.||+|+..
T Consensus 250 ~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFE 264 (354)
T ss_dssp SCEEEEEEECHHHHH
T ss_pred CCeEEEEEECcchhh
Confidence 689999999999853
No 347
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.55 E-value=0.15 Score=54.20 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999975
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.36 E-value=0.3 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999863
No 349
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.33 E-value=0.28 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.09 E-value=0.35 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+++|.++|||||+..+|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999973
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.97 E-value=0.42 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.+.|+++|.++|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999643
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.94 E-value=0.26 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.85 E-value=0.37 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHh
Q 045702 45 LPQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~ 66 (728)
.+.|+++|.++|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999995
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=86.51 E-value=0.37 Score=45.20 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+.|+++|.++|||||+..+|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.47 E-value=0.35 Score=45.71 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
|.|+++|.++|||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998885
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.44 E-value=0.37 Score=45.55 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+++|.++|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 357
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.40 E-value=0.36 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 358
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.38 E-value=0.33 Score=46.04 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
-|+|+|.++|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 359
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.23 E-value=3.2 Score=49.75 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHH
Q 045702 47 QVAVVGSQSSGKSSVLEAL 65 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL 65 (728)
.++++|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 360
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.07 E-value=0.38 Score=46.15 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999754
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.99 E-value=0.39 Score=46.22 Aligned_cols=21 Identities=38% Similarity=0.367 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.++|||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 362
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.93 E-value=0.36 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999974
No 363
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.85 E-value=0.44 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..+||||||+++|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.82 E-value=0.51 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..|||||||+++|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.82 E-value=0.42 Score=46.42 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 366
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.78 E-value=0.42 Score=46.46 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
.-.+|+|+.++||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467999999999999999986
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.57 E-value=0.36 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 368
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.55 E-value=0.42 Score=44.97 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHh
Q 045702 45 LPQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~ 66 (728)
.+.|+++|.++|||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4569999999999999999997
No 369
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.39 E-value=0.65 Score=47.24 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|++++|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999975
No 370
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.37 E-value=0.34 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||+++|.|..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999963
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.28 E-value=0.44 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999974
No 372
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.27 E-value=0.53 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|..|||||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.18 E-value=0.47 Score=46.11 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 374
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.13 E-value=0.47 Score=45.10 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=19.3
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
+.|+++|.++|||||+.+.|.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 375
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.12 E-value=0.42 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999974
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.04 E-value=0.37 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|+++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 377
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.03 E-value=0.38 Score=46.96 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-++++|++++|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999965
No 378
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.98 E-value=0.41 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.96 E-value=0.49 Score=44.02 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.0
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
+.|+++|.++|||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999985
No 380
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.85 E-value=0.42 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999999974
No 381
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.78 E-value=0.5 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|+++|.++|||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999754
No 382
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.77 E-value=0.44 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999974
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.72 E-value=0.47 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 384
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.64 E-value=0.5 Score=44.69 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.4
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+++|.++|||||+.+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.61 E-value=0.44 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|+|..+|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999963
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.59 E-value=0.22 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 387
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.45 E-value=0.55 Score=43.45 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+++|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 388
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=84.39 E-value=0.55 Score=50.22 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 175 ARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 175 ~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+.++++...|.+..+ ++++|+++.. .. ..+...++++.. +.++++|+||+|+.+..
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~d-~~-~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIFD-FN-GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETTS-HH-HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCc-EEEEEEECCC-Cc-ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 467778888888877 5566666543 21 222223334332 68999999999998654
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.29 E-value=0.46 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.++|||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.28 E-value=0.68 Score=44.42 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.++|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.03 E-value=0.4 Score=49.33 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-++|+|++|+|||||+..|+|.-
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999863
No 392
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=83.95 E-value=0.38 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|+|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999974
No 393
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.93 E-value=0.57 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+.|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999863
No 394
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.79 E-value=1.1 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 395
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.78 E-value=0.74 Score=46.09 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 396
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.65 E-value=0.41 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|+|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999999974
No 397
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.60 E-value=0.43 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|+|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999974
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.58 E-value=0.56 Score=45.68 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|..+|||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 399
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.53 E-value=0.52 Score=49.72 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.8
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
.-.+++|+.+|||||+++||+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999985
No 400
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.51 E-value=0.4 Score=54.77 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.|||||||++.|+|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999974
No 401
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=83.43 E-value=2.7 Score=41.18 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=44.0
Q ss_pred eEEEeCCCCcccCCCCCchhHHHHHHHHHHHHhhcCCeEEEEEecCCCCccc-HHHH-HHHHHhCC----CCCceEEeec
Q 045702 153 MTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLAT-SDAL-QMAREADP----TGSRTIGVIT 226 (728)
Q Consensus 153 LtlVDtPGi~~~~~~~~~~~~~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~-~~~l-~l~~~~d~----~~~rti~Vlt 226 (728)
|-..-+|| +...++| ..++.+++.|.++.|+||++|++++.+... .+.+ ++.+.+++ .+.+.++..|
T Consensus 98 ~~~~~~~~--~~~~GGQ-----~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 98 MFSRHNEG--DDQQGSR-----YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp --------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred cccccCCC--ccccCcH-----HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 44455566 2233444 478899999999999988888877653322 1112 12232332 4668888889
Q ss_pred cC-CCCCCCccH--HHhHcCCCcccCCceeEeec
Q 045702 227 KL-DIMDRGTNA--CNFLLGKVVPLRLGYVGVVN 257 (728)
Q Consensus 227 K~-D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~ 257 (728)
|. |+...-+.. .+.+.-. .+...|+...|
T Consensus 171 KqqDlp~Ams~~EI~e~L~L~--~l~R~W~Iq~c 202 (227)
T 3l82_B 171 ISQGDVKRMPCFYLAHELHLN--LLNHPWLVQDT 202 (227)
T ss_dssp ESSTTSCBCCHHHHHHHTTGG--GGCSCEEEEEE
T ss_pred CCcCccCCCCHHHHHHHcCCc--CCCCCEEEEEe
Confidence 96 664322221 1222211 13467876655
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.21 E-value=0.62 Score=45.78 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
..|+|+|.++|||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.99 E-value=0.58 Score=44.15 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+++|.++|||||+.+.|.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.95 E-value=0.6 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+-|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 405
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=82.94 E-value=0.71 Score=49.36 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 176 RIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 176 ~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
.++++...|...++ +|+.|+++..... +-...+.+.+. +.++++|+||+|+.+..
T Consensus 60 ~f~~~L~~~~~~~~-lil~VvD~~d~~~-s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 60 DFLSMLHRIGESKA-LVVNIVDIFDFNG-SFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHHHCC-EEEEEEETTCSGG-GCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHhhccCc-EEEEEEECCCCCC-chhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 56677788888888 5555555543221 11112233332 68999999999998754
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.88 E-value=0.53 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
-..|+++|..+|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.75 E-value=0.6 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|+|+|..+|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999854
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.68 E-value=0.64 Score=45.22 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 409
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.55 E-value=1.8 Score=45.82 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|-++|.|++|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.52 E-value=0.68 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|+|.++|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
No 411
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=82.45 E-value=0.12 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHhCCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~ 69 (728)
++|+|+.+||||||+++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999864
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.36 E-value=0.75 Score=44.10 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
|.|++.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 413
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.34 E-value=0.77 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|+|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.23 E-value=0.64 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.2
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
..|+|+|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999986
No 415
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=82.11 E-value=0.67 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHhCCCCCcc
Q 045702 48 VAVVGSQSSGKSSVLEALVGRDFLPR 73 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~~~lP~ 73 (728)
++++|..|||||||++.|.|.. -|.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~-~p~ 405 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL-KPD 405 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS-CCS
T ss_pred EEEECCCCCcHHHHHHHHhcCC-CCC
Confidence 7999999999999999999975 254
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.09 E-value=0.56 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999973
No 417
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=82.02 E-value=0.48 Score=44.50 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.1
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
..|+++|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999986
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.01 E-value=0.71 Score=46.44 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|+|+|.++||||||..+|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999974
No 419
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=81.96 E-value=0.58 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-.+++|+.++||||++++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 36799999999999999999853
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=81.69 E-value=0.59 Score=49.54 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.55 E-value=0.64 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|..+|||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=81.50 E-value=0.68 Score=48.61 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-++++|++|+|||||+++|.|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999874
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.50 E-value=0.64 Score=44.98 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++++|++++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.34 E-value=1.2 Score=44.55 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|.+||||||+...|.+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999753
No 425
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.32 E-value=0.82 Score=42.40 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHh
Q 045702 45 LPQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~ 66 (728)
.--|++.|.++|||||+...|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 4469999999999999999984
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.27 E-value=0.66 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCCCCc
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRDFLP 72 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~~lP 72 (728)
-++++|++++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 48999999999999999999853333
No 427
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.18 E-value=0.83 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+-|+++|++|+|||+++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 428
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=81.12 E-value=0.63 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-++|+|+.++|||||++||.+.-
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 57999999999999999999764
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.09 E-value=0.81 Score=44.91 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 430
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=81.03 E-value=1.4 Score=45.76 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=33.9
Q ss_pred HHhhcCCeEEEEEecCCC-CcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 183 AYIRQENCIILAVSPANS-DLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 183 ~yi~~~~~iIL~V~~a~~-d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
..+.+.| .|+.|+++.. ++.....-+++..+...+.+.++|+||+|+.+..
T Consensus 82 ~~~anvD-~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVD-QAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCC-EEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHhCC-EEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 4588889 5566666664 4444333344444445689999999999999764
No 431
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.96 E-value=0.72 Score=49.27 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.2
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
.-.+++|+.+|||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999986
No 432
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.68 E-value=0.57 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-.+++|+.+||||||++||...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999843
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=80.60 E-value=0.67 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.+||||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999964
No 434
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=80.45 E-value=0.25 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.9
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-.++++|+.|||||||+++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.30 E-value=0.89 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHhC
Q 045702 43 ISLPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 43 ~~lP~IvVvG~~ssGKSSllnaL~g 67 (728)
..-..|+++|..+|||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999863
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.12 E-value=0.97 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
..|+++|.++|||||+...|.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999996
No 437
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=79.70 E-value=8 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-++++|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998643
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.68 E-value=0.97 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|++.|..+|||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 439
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=79.58 E-value=7.8 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++++|+.++||||+++.|.|..
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999998864
No 440
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=79.55 E-value=1.6 Score=46.21 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..+.|+++|.+++||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3578999999999999999988763
No 441
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.35 E-value=11 Score=40.84 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCCC-eEEEECCCCCCHHHHHHHHhCC
Q 045702 43 ISLP-QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 43 ~~lP-~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+..| -|.+.|++|+|||++..||.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3344 5999999999999999999753
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.17 E-value=1 Score=43.82 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.1
Q ss_pred CeEEEECCCCCCHHHHHHHHh
Q 045702 46 PQVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~ 66 (728)
..|+|+|.++|||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999985
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.16 E-value=1.1 Score=44.11 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|+|.++|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.05 E-value=2.4 Score=43.32 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCCCCCCCeEEEECCCCCCHHHHHHHHhC
Q 045702 38 GELSKISLPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 38 g~~~~~~lP~IvVvG~~ssGKSSllnaL~g 67 (728)
|....-...-|++.|++|+|||++..+|..
T Consensus 60 g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 60 GLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp TCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 433333344699999999999999987764
No 445
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.95 E-value=1.2 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+-|+|+|+.+||||+|...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 4689999999999999999974
No 446
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.79 E-value=0.65 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 447
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.15 E-value=3.1 Score=42.99 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+-++|.|..++|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 56999999999999999999753
No 448
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.07 E-value=0.87 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..|.++++|+.|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4556999999999999999999883
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.81 E-value=1.1 Score=44.74 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.61 E-value=0.9 Score=46.22 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++|+|++|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 451
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.52 E-value=1 Score=56.43 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.++|||+.|||||||++.|+|.-
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 59999999999999999999963
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.38 E-value=1.2 Score=45.62 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=77.22 E-value=1.4 Score=43.88 Aligned_cols=20 Identities=50% Similarity=0.567 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+++|.++|||||+.+.|.
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.20 E-value=1.1 Score=45.83 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.|+|+|..+|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.11 E-value=1.3 Score=43.83 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
...|+++|.++|||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 456
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.11 E-value=0.73 Score=57.68 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCC-CCCceEEeecc
Q 045702 174 EARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADP-TGSRTIGVITK 227 (728)
Q Consensus 174 ~~~~~~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~-~~~rti~VltK 227 (728)
+.+.-.+++..++++. ||+.+.|+..+-......+.+.++. ...+|+++++.
T Consensus 1222 QrQriaiARAllr~~~--ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPK--ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HHHHHHHHHHHHSCCS--EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HHHHHHHHHHHHhCCC--EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4566788999999988 6667776654443332334444443 24678888775
No 457
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=77.09 E-value=0.9 Score=46.04 Aligned_cols=49 Identities=29% Similarity=0.367 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCC
Q 045702 179 KMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDR 233 (728)
Q Consensus 179 ~~~~~yi~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 233 (728)
..+...+.+.| +|+.|++|..+..... ..+. +- +++.++|+||+|+.+.
T Consensus 13 ~~~~~~l~~~D-~vl~VvDar~P~~~~~-~~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 13 RQIKDLLRLVN-TVVEVRDARAPFATSA-YGVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp HHHHHHHTTCS-EEEEEEETTSTTTTSC-TTSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHhhCC-EEEEEeeCCCCCcCcC-hHHH--hc--CCCcEEEEECccCCCH
Confidence 46678899999 6666666765554422 1111 22 7899999999999874
No 458
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.90 E-value=2.7 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|+|||+|+++|.|.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
No 459
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.49 E-value=2 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+-|+|+|..+||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999854
No 460
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=76.44 E-value=1.5 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.+-|++.|++|+|||+++.+|...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999753
No 461
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.95 E-value=1.6 Score=41.60 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+.+++.|++|+|||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999974
No 462
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.83 E-value=1.4 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+-|+|+|+.+||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999974
No 463
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.63 E-value=2.9 Score=37.78 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.+.|++|+|||++..+|...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999754
No 464
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.58 E-value=1.4 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
.|.++|+|.++||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999975
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=75.57 E-value=1.2 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||+.|||||||++.|.|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.50 E-value=1.6 Score=42.44 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|+++|||+|.-..|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 467
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=75.08 E-value=1.3 Score=41.00 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
+-|+++|++|+|||+++.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=75.08 E-value=1.6 Score=41.72 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|++.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999853
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=75.02 E-value=1.2 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.++++|+.|||||||++.|.|-
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999953
No 470
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.99 E-value=1.4 Score=46.24 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.+|.+++.|++|+||||++.+|.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999875
No 471
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=74.61 E-value=0.81 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.|+++|..+||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4899999999999999999986
No 472
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.24 E-value=0.98 Score=47.62 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-++|.|+.|+|||||++++.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 473
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.04 E-value=2.2 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+++|++|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
No 474
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=73.17 E-value=1.2 Score=51.59 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHHh
Q 045702 47 QVAVVGSQSSGKSSVLEALV 66 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~ 66 (728)
.++|+|+.+||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999998765
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=73.00 E-value=1.9 Score=42.27 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred CCCCCe-EEEECCCCCCHHHHHHHHhC
Q 045702 42 KISLPQ-VAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 42 ~~~lP~-IvVvG~~ssGKSSllnaL~g 67 (728)
...-|+ |+|+|.++|||+|.-..|..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344454 56789999999999988874
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.70 E-value=1.8 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
.-|+++|.++|||||+...|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=72.34 E-value=1.4 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
..-|+|.|..||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998743
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.26 E-value=3.5 Score=41.18 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHhC
Q 045702 48 VAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g 67 (728)
|++.|++|+|||+++.+|.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999985
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=72.23 E-value=1.8 Score=42.75 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|++.|..+|||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999743
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=72.22 E-value=2 Score=41.47 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++|.|+.|+|||+++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.06 E-value=2 Score=41.62 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-.-|+++|++++|||+|..+|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999855
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.84 E-value=1.9 Score=42.01 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|++.|++|+|||++..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888864
No 483
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=71.12 E-value=2.1 Score=40.68 Aligned_cols=21 Identities=48% Similarity=0.669 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.|+|..+||||++-+.|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999743
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.00 E-value=2.1 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~ 68 (728)
-|+|+|..+||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999999753
No 485
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=70.98 E-value=2 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.+++||..|||||||++.|.|..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999974
No 486
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.86 E-value=1.6 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhCCC
Q 045702 47 QVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
-+.|+|++|||||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 487
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.59 E-value=6 Score=39.67 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
.+-|++.|++|+|||++..+|..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999975
No 488
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=70.39 E-value=2.1 Score=41.92 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-++|+|++++|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999777653
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=70.31 E-value=1.5 Score=46.47 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=29.0
Q ss_pred hhcCCeEEEEEecCCCCcccHHHHHHHHHhCCCCCceEEeeccCCCCCCC
Q 045702 185 IRQENCIILAVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRG 234 (728)
Q Consensus 185 i~~~~~iIL~V~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 234 (728)
+.+.|.++ +|++...++.....-+++......+.+.++|+||+|+.+..
T Consensus 128 ~anvD~v~-iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 128 AANIDQIV-IVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EECCCEEE-EEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HhcCCEEE-EEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 57788554 45555444333332233322223468899999999999754
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=69.98 E-value=2.5 Score=43.32 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=20.4
Q ss_pred CCCCCeE-EEECCCCCCHHHHHHHHhC
Q 045702 42 KISLPQV-AVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 42 ~~~lP~I-vVvG~~ssGKSSllnaL~g 67 (728)
....|.. .+.|++|+|||+|..+|..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456655 4559999999999999974
No 491
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=69.87 E-value=1.3 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g 67 (728)
+.|+|.|..+||||||.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=69.30 E-value=1.5 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
---|+++|+.++||||+..+|+++-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 3459999999999999999998653
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.13 E-value=2.6 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|.++|||||+...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 494
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.90 E-value=2.1 Score=43.65 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhCC
Q 045702 46 PQVAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 46 P~IvVvG~~ssGKSSllnaL~g~ 68 (728)
.-|++.|++|+|||+++.+|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=68.87 E-value=2.4 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+++|.++|||||+.+.|..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 496
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.86 E-value=2.6 Score=38.07 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHhCC
Q 045702 48 VAVVGSQSSGKSSVLEALVGR 68 (728)
Q Consensus 48 IvVvG~~ssGKSSllnaL~g~ 68 (728)
|.+.|++|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 899999999999999999754
No 497
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=68.82 E-value=2.7 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
-|++.|..+|||||+++.|..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 498
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.53 E-value=2.6 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Q 045702 44 SLPQVAVVGSQSSGKSSVLEALVGRD 69 (728)
Q Consensus 44 ~lP~IvVvG~~ssGKSSllnaL~g~~ 69 (728)
.-+-++|+|.++||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999754
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.34 E-value=2.7 Score=43.92 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhC
Q 045702 47 QVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 47 ~IvVvG~~ssGKSSllnaL~g 67 (728)
.|+|+|.++||||||..+|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
No 500
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=68.10 E-value=2.6 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhC
Q 045702 45 LPQVAVVGSQSSGKSSVLEALVG 67 (728)
Q Consensus 45 lP~IvVvG~~ssGKSSllnaL~g 67 (728)
.|-++|+|.++||||++|++|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999874
Done!