RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045702
(728 letters)
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 643 bits (1658), Expect = 0.0
Identities = 279/747 (37%), Positives = 411/747 (55%), Gaps = 56/747 (7%)
Query: 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+IP++NRLQD FS + G+ + + LPQ+AVVG QS+GKSSVLE VGRDFLPRG I TR
Sbjct: 28 DLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 86
Query: 81 RPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
RPL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S
Sbjct: 87 RPLVLQLVNSTT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVP 139
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANS
Sbjct: 140 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 199
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ
Sbjct: 200 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 259
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
+DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++
Sbjct: 260 KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNK 319
Query: 321 LHSRLNAVAKELQKYGD-VMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGG 379
L S+L ++ KE+ +Y + + A K LL ++ ++ F ++G +I T ELSGG
Sbjct: 320 LQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGG 379
Query: 380 ARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIAR 439
ARI IF F L +++ + +I AI+N R LF P++ FE V++Q+ +
Sbjct: 380 ARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQK 439
Query: 440 LLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSL 499
L +P ++C+ V EL C+ +LQ++P LR ++ ++ IR+ + + L
Sbjct: 440 LKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLL 498
Query: 500 IEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQDG-------TDGEKGTLSEIGQRFGLT 552
I+IE+ Y+N+++ +F+G A + + Q K G T++ IG G +
Sbjct: 499 IDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGS 558
Query: 553 SQGRHSQSNNQRAASVGGNSSSRTWGFPIIFGGKVQAGESPASRSPHETLHNVEQLPSTI 612
+ + + + + + + S L N EQ
Sbjct: 559 KEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYK 618
Query: 613 QLT---------------------------------------EPPSILGPLEMTEQEAVE 633
E S M Q +
Sbjct: 619 DYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQ 678
Query: 634 ILVTKLLLQSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEH 693
+ + L+ SY +V K V+DL+PK+IMH ++N+ K + + + LY L++E
Sbjct: 679 VETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEES 738
Query: 694 DEVAANRRQVKEVSLVLQQAVQTLDEV 720
E A R ++ + L++A+ + ++
Sbjct: 739 AEQAQRRDEMLRMYHALKEALSIIGDI 765
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 510 bits (1315), Expect = e-174
Identities = 160/501 (31%), Positives = 255/501 (50%), Gaps = 14/501 (2%)
Query: 20 SSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
V P I+ L D + G ++LP +AV+G QSSGKSSVLEAL G PRG I T
Sbjct: 22 EKVRPCID-LIDSLRAL-GVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL-PRGSGIVT 78
Query: 80 RRPLALMLVNRPRNPGDDGREWAEFRHLP-GKRFFDFTKVRQEIMAETNKEAGSNRGVSE 138
R PL L L + ++ + + + D ++V +EI N AG G+S
Sbjct: 79 RCPLVLKL----KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISH 134
Query: 139 KQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPA 198
+ I L+ISS +V ++TL+DLPGIT+V VG+QP DI +I+ +I YI+++ I L V P+
Sbjct: 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPS 194
Query: 199 NSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGT--NACNFLLGKVVPLRLGYVGVV 256
N D+AT++AL MA+E DP G RTIG++TK D++D+GT + + V L+ GY+ V
Sbjct: 195 NVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVK 254
Query: 257 NRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSD--RCGIPQLAKKLNQILEQHIRMVL 314
R Q++I S+ +AL EK FF +HP + L + + +P LA+KL L HI L
Sbjct: 255 CRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSL 314
Query: 315 PGLKSELHSRLNAVAKELQKYG-DVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEIST 373
P L++++ + +ELQKYG D+ E + EK L++ + + + +A++ G +
Sbjct: 315 PLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEE-TVGE 373
Query: 374 KELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLV 433
+++ R+R+ F + I+ A FV FE +V
Sbjct: 374 EDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIV 433
Query: 434 RRQIARLLDPCLQCLRFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAE 493
++QI L +P + L V D + ++ + F L R + + R E
Sbjct: 434 KQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGE 493
Query: 494 RMIDSLIEIEMDYINSSNPNF 514
++I ++E + +
Sbjct: 494 KLIRLHFQMEQIVYGAFQSSS 514
Score = 68.2 bits (166), Expect = 5e-12
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 642 QSYYDVVRKNVQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDEVAANRR 701
+Y+ K + +P I F++ + L +Q L ++ LL+E + + R+
Sbjct: 528 MAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRK 587
Query: 702 QVKEVSLVLQQAVQTLDE 719
+KE L QA + L +
Sbjct: 588 FLKERLARLTQARRRLAQ 605
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 448 bits (1153), Expect = e-153
Identities = 155/359 (43%), Positives = 222/359 (61%), Gaps = 13/359 (3%)
Query: 21 SVIPIINRLQDIFSPV-------DGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPR 73
++I ++N++Q + + SLP +AVVG QSSGKSSVLE++VG+DFLPR
Sbjct: 3 NLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPR 62
Query: 74 GCDICTRRPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSN 133
G I TRRPL L L + D RE+AEF HLP K+F DF VR+EI ET++E G +
Sbjct: 63 GSGIVTRRPLVLQL----QKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRS 118
Query: 134 RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIIL 193
+ +S I L I SPNV+N+TL+DLPG+TKV V Q I I M+ +YI + NCIIL
Sbjct: 119 KAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178
Query: 194 AVSPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYV 253
A+SPAN DLATSDA++++RE DP+G RT GV+TK+D+MD+GT+A L G+ L+ +V
Sbjct: 179 AISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWV 238
Query: 254 GVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMV 313
GVVNRSQ DINKN M A E+ +F + Y L+++ G LAK L++ LE+ I+
Sbjct: 239 GVVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSR 298
Query: 314 LPGLKSELHSRLNAVAKELQKYGDVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEIS 372
+PG++S ++ + + EL + G + + + + + A S ++ S
Sbjct: 299 IPGIQSLINKTVLELETELSRLGKPIAHGTDSR--VDPAIMERRSAISKRLELYRAAQS 355
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 431 bits (1109), Expect = e-147
Identities = 175/315 (55%), Positives = 238/315 (75%), Gaps = 3/315 (0%)
Query: 22 VIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRR 81
+IP+IN+LQD+F+ + + + LPQ+ VVGSQSSGKSSVLE +VGRDFLPRG I TRR
Sbjct: 3 LIPVINKLQDVFNTLGSD--PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR 60
Query: 82 PLALMLVNRPRNP-GDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
PL L L + P G +EW EF H P F+DF+++R+EI+ +T++ G N+G+S +
Sbjct: 61 PLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQP 120
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I LKI SP+V+N+TLVDLPGITKVPVGDQPTDIE +IR+M+MAYI+++N II+AV+PAN+
Sbjct: 121 INLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDALQ+A+E DP G RTIGVITKLD+MD+GT+A L G+V+PL LG++GV+NRSQ
Sbjct: 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQ 240
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
EDI +S++++L E +F +HP+Y +++R G L+K LN++L HIR LP LK +
Sbjct: 241 EDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVK 300
Query: 321 LHSRLNAVAKELQKY 335
+ L+ V EL Y
Sbjct: 301 VSKMLSDVQGELSTY 315
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 426 bits (1096), Expect = e-144
Identities = 187/353 (52%), Positives = 248/353 (70%), Gaps = 13/353 (3%)
Query: 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+IP++NRLQD FS + G+ + + LPQ+AVVG QS+GKSSVLE VGRDFLPRG I TR
Sbjct: 8 DLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 66
Query: 81 RPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
RPL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S
Sbjct: 67 RPLVLQLVNATT-------EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVP 119
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANS
Sbjct: 120 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 179
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 239
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
+DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++
Sbjct: 240 KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNK 299
Query: 321 LHSRLNAVAKELQKYGDVMESKAEKETMLLNILTKYCE-----AFSAMVDGRS 368
L S+L ++ KE+++Y + K ++ + +L Y + ++ +
Sbjct: 300 LQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSIIGNINTTT 352
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 404 bits (1039), Expect = e-137
Identities = 181/305 (59%), Positives = 228/305 (74%), Gaps = 8/305 (2%)
Query: 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+IP++NRLQD FS + G+ + + LPQ+AVVG QS+GKSSVLE VGRDFLPRG I TR
Sbjct: 3 DLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 61
Query: 81 RPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
RPL L LVN E+AEF H GK+F DF +VR EI AET++ G+N+G+S
Sbjct: 62 RPLVLQLVN-------STTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVP 114
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANS
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
+DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++
Sbjct: 235 KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNK 294
Query: 321 LHSRL 325
L S+L
Sbjct: 295 LQSQL 299
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 141 bits (357), Expect = 6e-38
Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 10/217 (4%)
Query: 340 ESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDP 399
E + EK L++ + + + +A++ G + + +++ R+R+ F
Sbjct: 1 EDENEKMFFLIDKVNAFNQDITALMQG-EETVGEEDIRLFTRLRHEFHKWSTIIENNFQE 59
Query: 400 CQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMS 459
+ I+ G FV FE +V++QI L +P + L V D +
Sbjct: 60 GHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAF 119
Query: 460 HACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSLIEIEMDYINSSNPNFVGGKK 519
++ + F L R + + R E++I ++E + + + G +
Sbjct: 120 TDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQ-IVYCQDQVYRGALQ 178
Query: 520 AVEVAMQQLKSSQDGTDGEKG--------TLSEIGQR 548
V + + + D ++ EI Q
Sbjct: 179 KVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQH 215
Score = 59.6 bits (144), Expect = 7e-10
Identities = 15/96 (15%), Positives = 33/96 (34%)
Query: 600 ETLHNVEQLPSTIQLTEPPSILGPLEMTEQEAVEILVTKLLLQSYYDVVRKNVQDLVPKS 659
L V + + + G + + + L +Y+ K + +P
Sbjct: 175 GALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLI 234
Query: 660 IMHFLVNHAKRNLHNTFIQKLYRENHVEELLQEHDE 695
I F++ + L +Q L ++ LL+E +
Sbjct: 235 IQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSD 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 1e-12
Identities = 83/603 (13%), Positives = 153/603 (25%), Gaps = 234/603 (38%)
Query: 6 SFSNKNVAASTTIGSSVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEAL 65
F+ NV + + + L EL V + G SGK + +
Sbjct: 125 VFAKYNV----SRLQPYLKLRQALL--------ELRPA--KNVLIDGVLGSGK-TWVALD 169
Query: 66 VGRDF-----LPRG--------CDICTRRPLALMLVN-----------------RPRNPG 95
V + + C+ + + ML +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 96 DDGREWAEFRHLPGKRF------------------FDF-------TK---VRQEIMAETN 127
+ R L K + F+ T+ V + A T
Sbjct: 228 HSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 128 KEAGSN---RGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAY 184
+ ++ + + L+ DLP + R +I
Sbjct: 287 THISLDHHSMTLTPDE-VKSLLL-KYLDCRPQDLP--------REVLTTNPRRLSIIAES 336
Query: 185 IRQENCIILAVSPANSDLATSDALQMAREA-----DPTGSRTIGVITKLDIMDRGTNACN 239
IR N D L E+ +P R + +L + +
Sbjct: 337 IRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAH--- 386
Query: 240 FLLGKVVP---LRLGYVGVVNRSQEDI-NK--NRSMQDALAYEKNFFHDHPVYNGLSDRC 293
+P L L + V+ + NK S+ EK
Sbjct: 387 ------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPK---------ESTI 426
Query: 294 GIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKYGDVMESKAEKETMLLNIL 353
IP + +L LE + LH + + Y NI
Sbjct: 427 SIPSIYLELKVKLEN---------EYALHRSI------VDHY---------------NIP 456
Query: 354 TKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSI--FVKTLEEVDPCQDLTDEDIRTA 411
+ S ++ L Y + I +K +E +
Sbjct: 457 KTFD----------SDDLIPPYLDQ-----YFYSHIGHHLKNIEHPE------------- 488
Query: 412 IQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTE----- 466
R LF R + LD RF+ ++ S A +
Sbjct: 489 -------RMTLF-----------RMV--FLD-----FRFLEQKIRHDSTAWNASGSILNT 523
Query: 467 LQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSLIEIEMDYINSSNPNFVGGKKA--VEVA 524
LQ+ + + I D+ ER+++++ +D++ N + K + +A
Sbjct: 524 LQQLKFYKPY--------ICDNDPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIA 571
Query: 525 MQQ 527
+
Sbjct: 572 LMA 574
Score = 61.4 bits (148), Expect = 8e-10
Identities = 89/615 (14%), Positives = 178/615 (28%), Gaps = 169/615 (27%)
Query: 201 DLATSDALQMAR------EAD------PTGSRTIGVITKLDIMDRGTNACNFLLGKVVPL 248
+ D M + E D S T+ + L + + + +V L
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEV--L 87
Query: 249 RLGYVGVVNR-SQEDINKNRSMQDALAYEKNFFHDHPVYNGLS-DRCGIPQLAKKLNQIL 306
R+ Y +++ E + + + ++D+ V+ + R Q KL Q L
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQAL 144
Query: 307 EQ---HIRMVLPGL----KSELHSRLNAVAKELQKYG--DVME--------SKAEKETML 349
+ +++ G+ K+ + Y M+ +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 350 LNILTKYCEAFSAMVDGR---SQEISTKELSGGARIRYIFQS--------IF--VKTLEE 396
L +L K R S I + S A +R + +S + V+ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 397 VDP----CQDL--T-DEDIRTAIQNAT-------------GPRNA--LF-------VPEV 427
+ C+ L T + + + AT P L ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 428 PFEV-----LVRRQIARLL--DPC-LQCLRFV-YDEL---IKMSHACAVTELQRFPVLRR 475
P EV IA + + V D+L I+ S + L+ P R
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLE--PAEYR 372
Query: 476 HLDDVMGKFIRDSVR-PAERMIDSLIEIEMDYINSSNPNFVGGKKAVEVAMQQL--KSSQ 532
+ D + F S P + SLI ++ + V V + +L S
Sbjct: 373 KMFDRLSVF-PPSAHIPTILL--SLIWFDVIKSD------------VMVVVNKLHKYSLV 417
Query: 533 DGTDGEKGTLSEIGQRFGLTSQGRHSQSNNQRA-ASVGGNSSSRTWGF--PIIFG----- 584
+ ++ T+S L + + + ++ + + P +
Sbjct: 418 EK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 585 ------GKVQAGESPASRSPHETLHNVEQLPSTIQLTEPP-SILGPLEMTEQEAVEILVT 637
R +EQ I+ + G + T Q+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQ------- 526
Query: 638 KLLLQSYYDVVRKN--VQDLVPKSIMHFLVNHAKRNLHNTFIQKLYRENHVEELLQ---- 691
L+ Y + N + + +I+ FL + L + +LL+
Sbjct: 527 ---LKFYKPYICDNDPKYERLVNAILDFLPKIE---------ENLICSKYT-DLLRIALM 573
Query: 692 -EHDEVAAN-RRQVK 704
E + + +QV+
Sbjct: 574 AEDEAIFEEAHKQVQ 588
Score = 59.9 bits (144), Expect = 2e-09
Identities = 69/506 (13%), Positives = 155/506 (30%), Gaps = 136/506 (26%)
Query: 248 LRLGYVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQ-------LAK 300
+ Y +++ ++ N +D K+ + + + + + L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 301 KLNQILEQHIRMVL----PGLKSELHSRLNAVAKELQKYGDVMESKAEKETMLLN---IL 353
K +++++ + VL L S + + + + Y + ++ L N +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDR---LYNDNQVF 126
Query: 354 TKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQ 413
KY V R Q ++R + L E+ P +++ I
Sbjct: 127 AKY------NVS-RLQPYL--------KLR--------QALLELRPAKNVL-------ID 156
Query: 414 NATGP----------RNALFVPEVPFEV----LVRRQIARLLDPCLQ--CLRFVYDELIK 457
G + ++ F++ L + LQ + + +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 458 MSHACAV--------TELQRFPVLRRH------LDDVMGKFIRDSVRPAERMIDSLIEIE 503
H+ + EL+R + + L +V +++ + ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNA-----KAWNA----- 261
Query: 504 MDY---I-----NSSNPNFVGGKKAVEVAMQQLKSSQDG-TDGEKGTLSEIGQRFGLTSQ 554
+ I +F+ +++ T E S + + Q
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHH---SMTLTPDE--VKSLLLKYLDCRPQ 316
Query: 555 G--RHSQSNNQRAASVGGNSSSR---TW-GFPIIFGGKVQA--GESPASRSPHETLHNVE 606
R + N R S+ S TW + + K+ S P E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 607 QL---PSTIQLTEPPSILGPL--EMTEQEAVEILVTKLLLQSYYDVVRKNVQDLVPKSIM 661
+L P + + P +L + ++ + + V ++V KL S +V K ++ SI
Sbjct: 377 RLSVFPPSAHI--PTILLSLIWFDVIKSD-VMVVVNKLHKYS---LVEKQPKEST-ISIP 429
Query: 662 H-FLVNHAKRN----LHNTFIQKLYR 682
+L K LH + + Y
Sbjct: 430 SIYLELKVKLENEYALHRSIVDH-YN 454
Score = 54.5 bits (130), Expect = 1e-07
Identities = 69/428 (16%), Positives = 121/428 (28%), Gaps = 127/428 (29%)
Query: 322 HSRLNAVAKELQ-KYGDVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGA 380
H ++ E Q +Y D IL+ + +AF D + + K
Sbjct: 4 HHHMDFETGEHQYQYKD--------------ILSVFEDAFVDNFDCKDVQDMPK------ 43
Query: 381 RIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQ---I 437
SI K EE+D D T L + F L+ +Q +
Sbjct: 44 -------SILSK--EEIDHIIMSKDAVSGT-----------LRL----FWTLLSKQEEMV 79
Query: 438 ARLLDPCLQCLRFVYDELI-KMSHACAVTEL--QRFPVLRRHLDDVMGKFIRDSV-RPAE 493
+ ++ + LR Y L+ + + + + R L + F + +V R
Sbjct: 80 QKFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-- 134
Query: 494 RMIDSLIEIEMDYINSSNPNFVGGKKAVEVAMQQLKSSQD-GTDGEKGTLSEIGQRFGLT 552
+ L + A+ +L+ +++ DG G G T
Sbjct: 135 QPYLKLRQ----------------------ALLELRPAKNVLIDGVLG--------SGKT 164
Query: 553 SQGRHSQSNNQRAASVGGNSSSRTWGFPIIFGGKV---QAGESPASRSPHETLHNVEQLP 609
A V ++ K+ SP L +++L
Sbjct: 165 WV----------ALDV-----CLSYKVQCKMDFKIFWLNLKN---CNSPETVLEMLQKLL 206
Query: 610 STI--QLTEPPSILGPLEMTEQEAVEILVTKLLLQSY---YDVVRKNVQDLVPKSIMHFL 664
I T +++ L L + Y V+ NVQ+ K+ F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN--AKAWNAFN 263
Query: 665 VNHAK-----RNLHNTFIQKLYRENHVEELLQEHDEVAANRRQVKEV-SLVLQQAVQTLD 718
+ K R T H+ +H + +VK + L Q L
Sbjct: 264 L-SCKILLTTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 719 EVESEYLP 726
P
Sbjct: 320 REVLTTNP 327
Score = 44.8 bits (105), Expect = 1e-04
Identities = 59/385 (15%), Positives = 118/385 (30%), Gaps = 107/385 (27%)
Query: 8 SNKNVAASTTIGSSVIPIINRLQDIFSPVDGELSK-ISLPQVAVVGSQSSGKSSVLEALV 66
N + + ++ + R + + + + ISL ++ + KS +L+ L
Sbjct: 254 QNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 67 GRDF-LPRGCDICTRRPLAL-MLVNRPRNPGDDGREWAEFRHL----------------- 107
R LPR ++ T P L ++ R D W ++H+
Sbjct: 313 CRPQDLPR--EVLTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 108 PG---KRFFDF----------TKV---------RQEIMAETNKEAGSNRGVSEKQIGLKI 145
P K F T + + ++M NK + EKQ
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQ----- 420
Query: 146 SSPNVLNMTLVDLPGI---TKVPVGDQPTDIEARI-RKMIMAYIRQENCIILAVSPANSD 201
+ + +P I KV + + E + R ++ Y + + P D
Sbjct: 421 -----PKESTISIPSIYLELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 202 ----------LATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLG 251
L ++ R + LD FL K+
Sbjct: 471 QYFYSHIGHHLK---NIEHPERMT--LFRMV----FLDF--------RFLEQKIR--HDS 511
Query: 252 YVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCG--IPQLAKKLNQILEQH 309
+ S + +Q Y+ + P Y L + +P++ + L I ++
Sbjct: 512 TAWNASGSILNT-----LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--ICSKY 564
Query: 310 IRMVLPGLKSELHSRLNAVAKELQK 334
++ L +E + K++Q+
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 61.9 bits (149), Expect = 5e-10
Identities = 77/569 (13%), Positives = 155/569 (27%), Gaps = 63/569 (11%)
Query: 46 PQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFR 105
++ V+G GKS+ L AL+G + LP + CT L G + + F
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLR-------YGPEKKVTIHFN 122
Query: 106 HLPGKRFFDFTKVRQEIM---AETNKEAGSNRGVSEKQIGLKISSPNVL---NMTLVDLP 159
+ DF + + AE K + + P L + +VD P
Sbjct: 123 DGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSP 182
Query: 160 GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGS 219
G+ ++ + + Y+ + I+ V A+ + + G
Sbjct: 183 GLNDTEARNE----------LSLGYVNNCHAILF-VMRASQPCTLGERRYLENYIKGRGL 231
Query: 220 RTIGVITKLDIMDRG----------TNACNFLLGKVVPLRLGYVGVVNRSQEDINKNR-S 268
++ D + + N L Y V ++ D S
Sbjct: 232 TVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELS 291
Query: 269 MQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSELHSRLNAV 328
AL D G P+ LN L + +EL
Sbjct: 292 SIQALRRRLK------NPQADLDGTGFPKFMDSLNTFLTRERA------IAELRQVRTLA 339
Query: 329 AKELQKYGDVMESKAEKETMLLNILTKYCEAFSAMVDGRSQEISTKELSGGARIRYIFQS 388
+ + + +N L K ++ + ++ I
Sbjct: 340 RLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFN---------------KLTGIRDE 384
Query: 389 IFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIARLLDPCLQCL 448
+ + D E R+ + N F+ P L + + L
Sbjct: 385 FQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNAAL 444
Query: 449 -RFVYDELIKMSHACAVTELQRFPVLRRHLDDVMGKFIRDSVRPAERMIDSLIEIEMDYI 507
+ + S A +T + + L ++ + +++ + L ++
Sbjct: 445 QKAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQITEKLTGKDVKVH 504
Query: 508 NSSNPNFVGGKKAVEVAMQQLKSSQDGTDGEKGTLSEIGQRFGLTSQGRHSQSNNQRAAS 567
++ + AM L S+ G + + L + A
Sbjct: 505 TTTTAEEDNSPGWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAV 564
Query: 568 VGGNSSSRTWGFPIIFGGKVQAGESPASR 596
G + + G +QA ++
Sbjct: 565 TGILLGPIGFALLGLGVGFLQADQARREL 593
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 55.2 bits (132), Expect = 5e-08
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 32/212 (15%)
Query: 28 RLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDF--LPRGCDICTRRPLAL 85
R SP + P V V G S+GK+S ++ L+ ++ G + T +A+
Sbjct: 48 RFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV 107
Query: 86 MLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKI 145
M G P F + + + ++
Sbjct: 108 MHGETEGTV--PGNALVVDPEKP---FRKLNPFGNTFL--------------NRFMCAQL 148
Query: 146 SSPNVLNMTLVDLPGITKVP--VGDQPTDIEARIRKMI-MAYIRQENCIILAVSPANSDL 202
+ + +++++D PGI + D A +R + IIL L
Sbjct: 149 PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDL-----IILLFDAHK--L 201
Query: 203 ATSDALQMAREA-DPTGSRTIGVITKLDIMDR 233
SD A A + V+ K D+++
Sbjct: 202 EISDEFSEAIGALRGHEDKIRVVLNKADMVET 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-06
Identities = 56/290 (19%), Positives = 87/290 (30%), Gaps = 93/290 (32%)
Query: 2 GEEASF---SNKNVAASTTIG---------SSVIPIINRLQDIFSPVDGELSKISLPQVA 49
SF K + IG +S+ P I L+D +G S P ++
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI--LEDSLENNEGVPS----PMLS 340
Query: 50 VVG-SQSSGKSSVLEALVGR--DFLPRGCDICTRRPLALMLVNRPRN------PGDDGRE 100
+ +Q ++ V + LP G + + + LVN +N P
Sbjct: 341 ISNLTQEQ-----VQDYVNKTNSHLPAG------KQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 101 WAEFRHLPGKRFFDFTKV--RQEIMAETNKEAGSNRGVSEKQIGLKISSP-------NVL 151
R D +++ + K SNR L ++SP
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSER------KLKFSNR-------FLPVASPFHSHLLVPAS 436
Query: 152 NMTLVDLPGIT--------KVPV-----G----DQPTDIEARIRKMIMAY-IRQENCI-- 191
++ DL ++PV G I RI I+ ++ E
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 192 ----ILAVSP-ANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTN 236
IL P S L L R D TG R I T +D +
Sbjct: 497 KATHILDFGPGGASGLGV---L-THRNKDGTGVRVIVAGT----LDINPD 538
Score = 48.9 bits (116), Expect = 6e-06
Identities = 54/319 (16%), Positives = 91/319 (28%), Gaps = 115/319 (36%)
Query: 52 GSQSSG------KSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPR-NP--------GD 96
GSQ G K+S +D R D + +++ NP G+
Sbjct: 1625 GSQEQGMGMDLYKTSK----AAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 97 DGREWAE-FRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPN-VLNMT 154
G+ E + + + D ++I E N E S +L+ T
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEIN----------EHSTSYTFRSEKGLLSAT 1729
Query: 155 LVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCI----ILA----------VSPANS 200
T QP + + K ++ + I A S A+
Sbjct: 1730 -----QFT------QPA-LTL-MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 201 DLATSDAL----------QMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRL 250
++ + Q+A D G G+I A N P R+
Sbjct: 1777 -MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI-----------AIN-------PGRV 1817
Query: 251 GYVGVVNRSQEDINKNRSMQDALAYEKNFFHDHPV----YN---------GLSDRCGIPQ 297
SQE + + + + + + V YN G D +
Sbjct: 1818 AASF----SQEAL---QYVVERVGKRTGWL----VEIVNYNVENQQYVAAG--DLRALDT 1864
Query: 298 LAKKLNQILEQHIRMV-LP 315
+ LN I Q I ++ L
Sbjct: 1865 VTNVLNFIKLQKIDIIELQ 1883
Score = 43.9 bits (103), Expect = 2e-04
Identities = 63/403 (15%), Positives = 116/403 (28%), Gaps = 151/403 (37%)
Query: 419 RNALFVPEVPFEVLVRRQIARLLDPCLQCLRFVYDELIKMSHACAVTEL-QRFPVLRRHL 477
+ L VP F + ++L + + L + EL +F
Sbjct: 17 EHVLLVPTASFFIA-----SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF------- 64
Query: 478 DDVMGKFIRDSVRPAER-MIDSLIEIEMDYINSSNPNFVGGKKAVEV--AMQQLKSSQDG 534
+G ++ V P++ D ++ + + + ++ G ++ +L D
Sbjct: 65 ---LG-YVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLEGN---DIHALAAKLLQENDT 114
Query: 535 TDGEKGTL-------SEIGQRFGLTSQGRHSQSNNQRAASVGGNSSSRTWGFPIIFGGKV 587
T + L + +R + S S RA G +++ IFGG
Sbjct: 115 TLVKTKELIKNYITARIMAKR----PFDKKSNSALFRAVGEG---NAQLVA---IFGG-- 162
Query: 588 Q---------------------------AGE--SPASRSPHET-------------LHNV 605
Q + E S R+ + L N
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 606 EQLPSTIQLTEPP-SILGPLEMTEQEAVEILVTKLLLQSYYDVVRKN------------- 651
P L P S PL I V +L ++Y V K
Sbjct: 223 SNTPDKDYLLSIPISC--PL---------IGVIQL---AHYVVTAKLLGFTPGELRSYLK 268
Query: 652 -----VQDLV-------PKSIMHFLVNHAKRNLHNTFI-----QKLYRENHVE-ELLQ-- 691
Q LV S F V+ ++ + F + Y + +L+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 692 -EHDE------VAANRRQVKEVSLVLQQAVQTLDEVESEYLPE 727
E++E ++ +S + Q+ VQ + +LP
Sbjct: 328 LENNEGVPSPMLS--------ISNLTQEQVQDYVNKTNSHLPA 362
Score = 42.7 bits (100), Expect = 4e-04
Identities = 46/291 (15%), Positives = 91/291 (31%), Gaps = 114/291 (39%)
Query: 308 QHIRMVLPGLKSELHSRLNAVAKELQKYGDVMESKAEKETM---LLNILTKYCEAFSAMV 364
Q M G+ +L+ + A+++ D K+T +L+I+ +
Sbjct: 1627 QEQGM---GM--DLYKT-SKAAQDVWNRAD----NHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 365 DG-RSQEISTKELSGGARIRY---IFQSI------FVKTLEEVDPC-QDLT---DEDI-- 408
G + + I R Y IF++I K +E++ T ++ +
Sbjct: 1677 GGEKGKRI---------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 409 RTAIQNATGPRNALFVPEV-PFEVLVRRQIARLLDPCLQCLRFVYDELIKMS-H------ 460
T Q T P AL + E FE L + + + + H
Sbjct: 1728 AT--QF-TQP--ALTLMEKAAFEDL--KS------------KGLIPADATFAGHSLGEYA 1768
Query: 461 A-CAVTELQRFPVLRRHLDDVM------GKFI-----RDS----------VRPAERMIDS 498
A ++ + V+ ++ ++ G + RD + P R+ S
Sbjct: 1769 ALASLAD-----VM--SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAAS 1820
Query: 499 LIEIEMDYI-----------------NSSNPNFV--GGKKAVEVAMQQLKS 530
+ + Y+ N N +V G +A++ L
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 35.7 bits (83), Expect = 0.027
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 16/125 (12%)
Query: 149 NVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAY----IRQENCIILAV--------- 195
N ++D+PG + P +++ RI+ I+ + + + +L V
Sbjct: 42 EWKNHKIIDMPGFGFMMGL--PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99
Query: 196 SPANSDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFL-LGKVVPLRLGYVG 254
++ + TI + KLD + NFL VPL
Sbjct: 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKV 159
Query: 255 VVNRS 259
+ S
Sbjct: 160 FIPIS 164
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 36.2 bits (83), Expect = 0.039
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 27 NRLQDIFSPVDGELSKI--SLPQVAVVGSQSSGKSSVLEALVGRDFL-----PRGCDICT 79
+Q S + L +I S+ VAV G SGKSS + L G G T
Sbjct: 49 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT 108
Query: 80 RRPLALMLVNRPR 92
N P
Sbjct: 109 MERHPYKHPNIPN 121
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 34.1 bits (79), Expect = 0.11
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 29 LQDI-FSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVG 67
L I FS +G L VAVVG GKSS+L AL+
Sbjct: 21 LNGITFSIPEGAL-------VAVVGQVGCGKSSLLSALLA 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 34.1 bits (79), Expect = 0.11
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 29 LQDI-FSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVG 67
L+DI F G+L +AV GS +GK+S+L ++G
Sbjct: 24 LKDINFKIERGQL-------LAVAGSTGAGKTSLLMMIMG 56
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 34.2 bits (79), Expect = 0.11
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 29 LQDI-FSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVG 67
L+DI F G+L +AV GS +GK+S+L ++G
Sbjct: 54 LKDINFKIERGQL-------LAVAGSTGAGKTSLLMMIMG 86
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 31.4 bits (72), Expect = 0.73
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 152 NMTLVDLP--GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS-------PANSDL 202
VDLP G KV ++ ++++ Y + + + P +SD
Sbjct: 69 KYYFVDLPGYGYAKVSKKER-----MLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD- 122
Query: 203 ATSDALQMAREADPTGSRTIGVITKLD 229
L M V+TK+D
Sbjct: 123 -----LMMVEWMKSLNIPFTIVLTKMD 144
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A
{Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Length = 300
Score = 31.7 bits (73), Expect = 0.81
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 172 DIEARIRKMIMAYIRQENCIILA---VSPANSDLA--TSDALQMAREADPTGSRTI---G 223
D+ I ++ + N IILA P D+A D+L++AR A + I G
Sbjct: 2 DLVEEILRLK----EERNAIILAHNYQLPEVQDIADFIGDSLELARRATRVDADVIVFAG 57
Query: 224 V 224
V
Sbjct: 58 V 58
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
2.00A {Lactobacillus acidophilus}
Length = 312
Score = 31.7 bits (72), Expect = 0.83
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 157 DLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLA-TSDALQMAREA 214
++P + D++ R+ K +Q +I + + D + + ++ + A
Sbjct: 27 NIPNMFPFIKIKTLMDLDERLTKWPDQNTKQ---VISLANISPEDFTDSKTSAELCQSA 82
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 31.0 bits (71), Expect = 1.0
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 152 NMTLVDLP--GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS-------PANSDL 202
+ VD+P G KV ++ +MI YI + V P+N D
Sbjct: 70 ELHFVDVPGYGFAKVSKSER-----EAWGRMIETYITTREELKAVVQIVDLRHAPSNDD- 123
Query: 203 ATSDALQMAREADPTGSRTIGVITKLD 229
+QM G I + TK D
Sbjct: 124 -----VQMYEFLKYYGIPVIVIATKAD 145
Score = 27.9 bits (63), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 44 SLPQVAVVGSQSSGKSSVLEALVGR 68
LP++A+ G + GKSS + +L+ R
Sbjct: 22 GLPEIALAGRSNVGKSSFINSLINR 46
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 30.4 bits (69), Expect = 1.2
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 563 QRAASVGGNSSSRTWGFPIIFGGKVQAGESPA 594
+R+ +++ W P GGKV ES
Sbjct: 26 RRSE--NSRTNAGKWDLP---GGKVNPDESLK 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.4
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 603 HNVEQLPSTIQLTEPPSILGP-LEMTEQEAVE 633
+++L ++++L S P L + + +E
Sbjct: 20 QALKKLQASLKLYADDS--APALAI--KATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.6
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 677 IQKLYRENHVEELLQEHDEVAANRRQVKEVSLVLQQAVQTLDEVESEY 724
I+K +RE + LQE D + Q ++A + L+E
Sbjct: 87 IRK-WREEQ-RKRLQELDAASKVMEQE-----WREKAKKDLEEWNQRQ 127
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin,
synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1,
coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP:
h.1.15.1
Length = 70
Score = 28.3 bits (63), Expect = 1.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 200 SDLATSDALQMAREADPTGSRTIGVI 225
S +T + L+MA++A+ G T+G++
Sbjct: 10 SVASTRNTLKMAQDAERAGMNTLGML 35
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 30.1 bits (68), Expect = 1.8
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 577 WGFPIIFGGKVQAGESPA 594
W GGKVQ GE+
Sbjct: 52 WNGF---GGKVQEGETIE 66
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 30.0 bits (68), Expect = 2.0
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 20/95 (21%)
Query: 144 KISSPNVLNMTLVDLP--GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS----- 196
+ LVDLP G +VP + A +++ +Y++ + +
Sbjct: 72 SVGPAAEPVAHLVDLPGYGYAEVPGAAK-----AHWEQLLSSYLQTRPQLCGMILMMDAR 126
Query: 197 --PANSDLATSDALQMAREADPTGSRTIGVITKLD 229
D +M PTG ++TK D
Sbjct: 127 RPLTELD------RRMIEWFAPTGKPIHSLLTKCD 155
Score = 28.0 bits (63), Expect = 8.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 44 SLPQVAVVGSQSSGKSSVLEALVGR 68
P++A G ++GKS+ + L +
Sbjct: 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 29.2 bits (66), Expect = 2.5
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 577 WGFPIIFGGKVQAGESPA 594
FP GG V+ GE A
Sbjct: 39 HSFP---GGHVEVGEPCA 53
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 29.5 bits (67), Expect = 2.7
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 20/84 (23%)
Query: 155 LVDLP--GITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVS-------PANSDLATS 205
LVDLP G +VP + + ++ + Y+ + + V + D
Sbjct: 76 LVDLPGYGYAEVPEEMK-----RKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD---- 126
Query: 206 DALQMAREADPTGSRTIGVITKLD 229
QM A + + ++TK D
Sbjct: 127 --QQMIEWAVDSNIAVLVLLTKAD 148
Score = 28.4 bits (64), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 44 SLPQVAVVGSQSSGKSSVLEALVGR 68
+ +VA G ++GKSS L L +
Sbjct: 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 563 QRAASVGGNSSSRTWGFPIIFGGKVQAGESPA 594
+R + WG P GGKV E
Sbjct: 46 KRKRAPEAG----CWGLP---GGKVDWLEPVE 70
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 28.8 bits (65), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 577 WGFPIIFGGKVQAGESPA 594
W FP GGK++ GE+P
Sbjct: 37 WEFP---GGKLEPGETPE 51
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 28.9 bits (65), Expect = 4.1
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 577 WGFPIIFGGKVQAGESPA 594
W P GGK++AGES
Sbjct: 28 WVAP---GGKMEAGESIL 42
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 29.1 bits (64), Expect = 4.1
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 142 GLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSD 201
L ++ + + +++L + V P D R ++ + + ++D
Sbjct: 143 LLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTD 202
Query: 202 LATSDALQMAREA--------DPTGSRTIGVITKLDIMDR 233
D E D + +G I + ++
Sbjct: 203 DLVEDVKVTMSETRYSNYPVIDENN-KVVGSIARFHLIST 241
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 28.6 bits (64), Expect = 4.2
Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
+ P GG+++ E+
Sbjct: 43 YFLP---GGEIEGTETK 56
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 28.5 bits (64), Expect = 4.6
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
W FP GGKV+ GE+P
Sbjct: 58 WEFP---GGKVEQGETP 71
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 28.2 bits (63), Expect = 5.1
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 563 QRAASVGGNSSSRTWGFPIIFGGKVQAGESPA 594
Q G + W P G V+ GE+P
Sbjct: 31 QEKGIPGHPEKAGLWHIP---SGAVEDGENPQ 59
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 28.1 bits (63), Expect = 5.3
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
+ FP GG V+ E+
Sbjct: 38 YAFP---GGHVENDEAF 51
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 27.9 bits (63), Expect = 5.9
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
+ FP GGKV+ GES
Sbjct: 36 YEFP---GGKVEEGESL 49
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 28.3 bits (63), Expect = 6.3
Identities = 6/17 (35%), Positives = 7/17 (41%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
W GG V+ GE
Sbjct: 57 WALS---GGGVEPGERI 70
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.1 bits (62), Expect = 6.4
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAE 103
++ VVG + SGK++++E V + G + T + D R
Sbjct: 3 AMNVWQVVGYKHSGKTTLMEKWV-AAAVREGWRVGTVKHHGHGGEPARPEGVDSVR---- 57
Query: 104 FRHLPGKRFFDFTKVRQEIMAETNKEA 130
++
Sbjct: 58 HERAGAVATAVEGDGLLQLHLRRPLWR 84
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.9 bits (61), Expect = 7.5
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 41 SKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGRE 100
K +P +A +GK+++L+ L+ RG RP + + + G++
Sbjct: 2 GKTMIPLLAFAAWSGTGKTTLLKKLI-PALCARGI-----RPGLIKHTHHDMDVDKPGKD 55
Query: 101 WAEFRHLPGKRFFDFTKVRQEIMAETNKE 129
E R + ++ R +M ET E
Sbjct: 56 SYELRKAGAAQTIVASQQRWALMTETPDE 84
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 28.6 bits (65), Expect = 7.8
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 25 IINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRD 69
II +L++ ++ + +VA+VG + GKS++ A++ ++
Sbjct: 160 IIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia
coli} SCOP: c.46.1.2 c.46.1.2
Length = 280
Score = 28.3 bits (64), Expect = 8.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 91 PRNPGDDGREWAEFRHLPGKRFFD 114
P + + H+PG FFD
Sbjct: 30 PGQEDRNVAQEYLNGHIPGAVFFD 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.4 bits (64), Expect = 8.8
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 24/66 (36%)
Query: 20 SSVIPIIN-----------------RLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVL 62
S ++P + L + +G + V +VG +GKS+ +
Sbjct: 12 SGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMV-------VGIVGPNGTGKSTAV 64
Query: 63 EALVGR 68
+ L G+
Sbjct: 65 KILAGQ 70
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 27.5 bits (62), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 577 WGFPIIFGGKVQAGESP 593
FP GGK++ GE+P
Sbjct: 33 LEFP---GGKIEMGETP 46
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 27.6 bits (62), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 577 WGFPIIFGGKVQAGESPAS 595
W FP GGK++ GE+P
Sbjct: 50 WEFP---GGKIENGETPEE 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,880,454
Number of extensions: 680521
Number of successful extensions: 1933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 82
Length of query: 728
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 627
Effective length of database: 3,881,772
Effective search space: 2433871044
Effective search space used: 2433871044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)