RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045702
(728 letters)
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 317 bits (814), Expect = e-103
Identities = 171/307 (55%), Positives = 234/307 (76%), Gaps = 3/307 (0%)
Query: 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+IP+IN+LQD+F+ + + + LPQ+ VVGSQSSGKSSVLE +VGRDFLPRG I TR
Sbjct: 2 QLIPVINKLQDVFNTLGSD--PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTR 59
Query: 81 RPLALMLVNRPRNP-GDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEK 139
RPL L L + P G +EW EF H P F+DF+++R+EI+ +T++ G N+G+S +
Sbjct: 60 RPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQ 119
Query: 140 QIGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPAN 199
I LKI SP+V+N+TLVDLPGITKVPVGDQPTDIE +IR+M+MAYI+++N II+AV+PAN
Sbjct: 120 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179
Query: 200 SDLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRS 259
+DLA SDALQ+A+E DP G RTIGVITKLD+MD+GT+A L G+V+PL LG++GV+NRS
Sbjct: 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239
Query: 260 QEDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKS 319
QEDI +S++++L E +F +HP+Y +++R G L+K LN++L HIR LP LK
Sbjct: 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV 299
Query: 320 ELHSRLN 326
++ L+
Sbjct: 300 KVSKMLS 306
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 296 bits (757), Expect = 2e-95
Identities = 179/305 (58%), Positives = 227/305 (74%), Gaps = 8/305 (2%)
Query: 21 SVIPIINRLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+IP++NRLQD FS + G+ + + LPQ+AVVG QS+GKSSVLE VGRDFLPRG I TR
Sbjct: 3 DLIPLVNRLQDAFSAI-GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR 61
Query: 81 RPLALMLVNRPRNPGDDGREWAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQ 140
RPL L L + E+AEF H GK+F DF +VR EI AET++ G+N+G+S
Sbjct: 62 RPLVLQL-------VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVP 114
Query: 141 IGLKISSPNVLNMTLVDLPGITKVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
I L++ SP+VLN+TLVDLPG+TKVPVGDQP DIE +IR M+M ++ +ENC+ILAVSPANS
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174
Query: 201 DLATSDALQMAREADPTGSRTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQ 260
DLA SDAL++A+E DP G RTIGVITKLD+MD GT+A + L K++PLR GY+GVVNRSQ
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234
Query: 261 EDINKNRSMQDALAYEKNFFHDHPVYNGLSDRCGIPQLAKKLNQILEQHIRMVLPGLKSE 320
+DI+ + + ALA E+ FF HP Y L+DR G P L K LNQ L HIR LPGL+++
Sbjct: 235 KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNK 294
Query: 321 LHSRL 325
L S+L
Sbjct: 295 LQSQL 299
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 35.8 bits (81), Expect = 0.007
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 9/149 (6%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
+ ++G ++GK+++L+ G D + + G++
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 64
Query: 108 PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVG 167
D + + S + ++ DLPG
Sbjct: 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG------- 117
Query: 168 DQPTDIEARIRKMIMAYIRQENCIILAVS 196
A + + IR + I S
Sbjct: 118 --ALSCNAIQEALELDSIRSHHWRIQGCS 144
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.6 bits (78), Expect = 0.020
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRP 82
+ V +VG ++GKSS+L A+ T P
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP 38
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 33.5 bits (75), Expect = 0.044
Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 17/171 (9%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFL----PRGCDICTRRPLALMLVNRPRNPGDDGREWAE 103
+ VVG GKS++ + F+ P D + G+E
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 104 FRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITK 163
R D + + + + E ++ + S P +L VDL + K
Sbjct: 67 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 126
Query: 164 VPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQ-MARE 213
V R + N + S + L + R
Sbjct: 127 VT------------RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 165
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 33.4 bits (75), Expect = 0.061
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRP 82
L V +VG S GKS++L + T P
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP 38
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.2 bits (74), Expect = 0.063
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 39 ELSKISLPQVAVVGSQSSGKSSVLEALVGRDFL 71
+ + LP++A+ G + GKSS + +L+ R L
Sbjct: 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNL 49
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.4 bits (72), Expect = 0.10
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRH 106
VA+VG + GKS++L L+G P T R ++ R +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.7 bits (73), Expect = 0.10
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 46 PQVAVVGSQSSGKSSVLEALVGRDFLP 72
P + + G Q+SGK+S+L L P
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSVRP 30
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 32.1 bits (71), Expect = 0.13
Identities = 15/86 (17%), Positives = 26/86 (30%)
Query: 39 ELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDG 98
L + +VA G ++GKSS L L + L R R L + D
Sbjct: 10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 69
Query: 99 REWAEFRHLPGKRFFDFTKVRQEIMA 124
+ + + + +
Sbjct: 70 PGYGYAEVPEEMKRKWQRALGEYLEK 95
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.8 bits (74), Expect = 0.16
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 27 NRLQDIFSPVDGELSKI--SLPQVAVVGSQSSGKSSVLEALVGRDFLPRG 74
+Q S + L +I S+ VAV G SGKSS + L G G
Sbjct: 36 GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEG 85
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.20
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 47 QVAVVGSQSSGKSSVLEALVGRDF 70
+V + G ++GKSS+L AL GR+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREA 26
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 30.7 bits (68), Expect = 0.34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 47 QVAVVGSQSSGKSSVLEALVGRD 69
++ +VG + GKS++L L+ D
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNED 24
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.8 bits (68), Expect = 0.35
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 48 VAVVGSQSSGKSSVLEALVGRD 69
+A+VG + GKS++L L+G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK 29
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.38
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 48 VAVVGSQSSGKSSVLEALVGRD 69
V +VG + GKS++ LV +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK 24
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 31.2 bits (70), Expect = 0.39
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
VA+VG +GKS ++ L G+
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKK 57
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.7 bits (68), Expect = 0.40
Identities = 16/149 (10%), Positives = 34/149 (22%), Gaps = 9/149 (6%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
+ ++G ++GK+++L+ L D + G+
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 78
Query: 108 PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVG 167
D + E + P ++ DL
Sbjct: 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT------- 131
Query: 168 DQPTDIEARIRKMIMAYIRQENCIILAVS 196
+ + IR I + S
Sbjct: 132 --AAPASEIAEGLNLHTIRDRVWQIQSCS 158
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.4 bits (67), Expect = 0.46
Identities = 14/149 (9%), Positives = 36/149 (24%), Gaps = 9/149 (6%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
+ ++G +GK+++L L + + I + + G
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWR 67
Query: 108 PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVG 167
D + + V+ + + V+ D+
Sbjct: 68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME-------- 119
Query: 168 DQPTDIEARIRKMIMAYIRQENCIILAVS 196
Q + + ++ I S
Sbjct: 120 -QAMTSSEMANSLGLPALKDRKWQIFKTS 147
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.0 bits (66), Expect = 0.65
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTR 80
+ +G ++GK+++L L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT 35
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.6 bits (65), Expect = 0.67
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRR 81
+ +VG ++GK+++L L + + I
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 30.0 bits (66), Expect = 0.73
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 47 QVAVVGSQSSGKSSVLEALVGRD 69
+VA+VG + GKS++ A++ ++
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKE 32
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.9 bits (67), Expect = 0.85
Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 20/183 (10%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
A+VG SGKS+V L + P G + L++ P + R
Sbjct: 43 TALVGPNGSGKSTVAALL-QNLYQPTGGQL---------LLDGKPLPQYEHRYLHRQVAA 92
Query: 108 PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVG 167
G+ F + QE +A + + ++ + + + LP V
Sbjct: 93 VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG------AHSFISGLPQGYDTEVD 146
Query: 168 DQPTDIEA--RIRKMIMAYIRQENCIILAVSP-ANSDLATSDALQMA-READPTGSRTIG 223
+ + + R + + ++ C+++ + D + ++ E+ SR++
Sbjct: 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206
Query: 224 VIT 226
+IT
Sbjct: 207 LIT 209
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.87
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
V +VG GK+ +L FL
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 40
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.7 bits (65), Expect = 0.89
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 48 VAVVGSQSSGKSSVLEALVGRD 69
+ G + GKS+++ L G+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK 24
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 29.6 bits (65), Expect = 0.93
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP-----RGCDICTRRPLALMLVNRPRNPGDDGREWA 102
+ ++G + GKSS++ V DF G T+R + G+E
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE-- 63
Query: 103 EFRHLPGKRFFDFTKV 118
F L + +
Sbjct: 64 RFASLAPMYYRNAQAA 79
>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 298
Score = 29.9 bits (67), Expect = 0.98
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 172 DIEARIRKMIMAYIRQENCIILA---VSPANSDLA--TSDALQMAREADPTGSRTI 222
D+ I ++ + N IILA P D+A D+L++AR A + I
Sbjct: 2 DLVEEILRLK----EERNAIILAHNYQLPEVQDIADFIGDSLELARRATRVDADVI 53
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 29.2 bits (64), Expect = 1.3
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 44 SLPQ--VAVVGSQSSGKSSVLEALVGRDF 70
S+P+ + V+G SGKSS++ + +
Sbjct: 2 SIPELRLGVLGDARSGKSSLIHRFLTGSY 30
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 28.9 bits (63), Expect = 1.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
V ++G GK+S++ V + F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKF 27
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.7 bits (63), Expect = 1.6
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
+ ++G+ S GK+S L F P
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.8 bits (63), Expect = 1.6
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 11/151 (7%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF----LPRGCDICTRRPLALMLVNRPRNPGDDGREWAE 103
VVG + GK+ +L + F +P D + + G+E +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 104 FRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTL---VDLPG 160
D + I A ++ ++ PN + + +DL
Sbjct: 68 RLRPLSYPQTDVSL----ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 161 ITKVPVGDQPTDIEARIRKMIMAYIRQENCI 191
+ + +A ++ +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+ +VG Q SGK++ + + F
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 27.5 bits (61), Expect = 1.7
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 605 VEQLPSTIQLTEPPSILGPLEMTEQEAVEIL---VTKLLLQSYYDVVRKNVQDLVPKSIM 661
+E P P G L+ +++A+ L + D +++
Sbjct: 7 LESYPQNCPPDALPGTPGNLDSAQEKALAELRKLLEDAGFIERLD----------DSTLL 56
Query: 662 HFL------VNHAKRNLHNTFIQKLYRENHVEELLQE 692
FL V AK N K ++ + +LQ+
Sbjct: 57 RFLRARKFDVQLAKEMFENCE--KWRKDYGTDTILQD 91
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 1.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
V VG SGK+ + L+ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQY 25
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 1.9
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 43 ISLPQVAVVGSQSSGKSSVLEALVGRDFLP 72
+++ ++ VVG+ + GKSS+++ F
Sbjct: 1 VAI-KMVVVGNGAVGKSSMIQRYCKGIFTK 29
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.5 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
V ++G+ GKS++ G + P
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGP 28
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.4 bits (62), Expect = 2.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 42 KISLPQVAVVGSQSSGKSSVLEALVGRDFLP 72
K SL +V ++G GKSS++ V F
Sbjct: 3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT 33
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.0 bits (64), Expect = 2.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 47 QVAVVGSQSSGKSSVLEALVGRD 69
+ V+G GKSS + +++G
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGER 56
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.3 bits (62), Expect = 2.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
VVG + SGK++++E V + G + T
Sbjct: 4 WQVVGYKHSGKTTLMEKWV-AAAVREGWRVGT 34
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 2.1
Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 13/184 (7%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
++++GS SGKS+ L + + G I + + L+ + D + R
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90
Query: 108 PGKRF-----FDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGIT 162
F + V + +M + G+S+ + + V +
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQ----VLGLSKHDARERALK----YLAKVGIDERA 142
Query: 163 KVPVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSDALQMAREADPTGSRTI 222
+ + + + + A + + ++ + D + + +T+
Sbjct: 143 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 202
Query: 223 GVIT 226
V+T
Sbjct: 203 VVVT 206
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.5 bits (62), Expect = 2.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
V ++G GK+S++ V +
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQ 29
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (61), Expect = 2.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
V ++G Q GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHD 28
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.0 bits (61), Expect = 2.6
Identities = 13/156 (8%), Positives = 42/156 (26%), Gaps = 16/156 (10%)
Query: 45 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEF 104
+P +A +GK+++L+ L+ RG + +
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLI-PALCARGIRPGLIKH-------------THHDMDVDK 47
Query: 105 RHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKV 164
+ + + + +++ + ++ + +DL +
Sbjct: 48 PGKDSYELRKAGAAQTIVAS--QQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGF 105
Query: 165 PVGDQPTDIEARIRKMIMAYIRQENCIILAVSPANS 200
+ + R + ++AV+
Sbjct: 106 KHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVP 141
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+A++G +S GKSS+ V F
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF 29
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.0 bits (61), Expect = 2.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
VAV G+ GKSS++ V F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRE 29
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.9 bits (61), Expect = 3.0
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
+ ++G+ GK+ ++ F P
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 39
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.0 bits (61), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 44 SLP--QVAVVGSQSSGKSSVLEALVGRDFLP 72
SL +V +VGS GKS++ + +F+
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE 31
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 3.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
V V+GS GKS++ V F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIE 30
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.1 bits (61), Expect = 3.1
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 4/72 (5%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF----LPRGCDICTRRPLALMLVNRPRNPGDDGREWAE 103
+ +VG + GK+ +L F +P + G E +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 104 FRHLPGKRFFDF 115
D
Sbjct: 65 RLRPLSYPDTDV 76
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.7 bits (60), Expect = 3.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ VVG GKS++ + F+
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVS 33
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 27.7 bits (60), Expect = 3.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ V+G + GK+ + F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPD 29
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 3.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ +G GK++ L F P
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNP 32
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.5 bits (60), Expect = 3.8
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICT 79
V ++G GKS++L +F
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 38
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 3.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+ VVG+ GKS++ L+ F
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHF 28
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.7 bits (60), Expect = 3.9
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+A+ G GKS+++ + + F+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIW 29
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.6 bits (60), Expect = 4.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ +G QS GK+S++ + F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDN 27
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 27.4 bits (60), Expect = 4.1
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 576 TWGFPIIFGGKVQAGESPASRSPHETL 602
P G ++ GES E L
Sbjct: 29 KLNQP---AGHLEPGESIIQACSREVL 52
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.4 bits (60), Expect = 4.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 44 SLPQVAVVGSQSSGKSSVLEALVGRDFLP 72
S+ ++ ++G GKS +L V F P
Sbjct: 1 SIMKILLIGDSGVGKSCLLVRFVEDKFNP 29
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 4.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ ++G GKSS+L F P
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDP 34
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.7 bits (60), Expect = 4.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 42 KISLPQVAVVGSQSSGKSSVLEALVG 67
KI P V+V+G GK+++L+ + G
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRG 27
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 27.6 bits (61), Expect = 4.6
Identities = 22/175 (12%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 48 VAVVGSQSSGKSSVLEALVG------RDFLPRGCDIC-TRRPLALMLVNRPRNPGDDGRE 100
V G GK+++L+ + + + G I + + + +
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVED 89
Query: 101 WAEFRHLPGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIG----LKISSPNVLNMTLV 156
+ + + K E+ + + + E G ++++S ++N +
Sbjct: 90 YLKA--VASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 157 DLPGITKVPVGDQPT---DIEAR--IRKMIMAYIRQENCIILAVSPANSDLATSD 206
L D P D +++ + K I+ ++++ +I++ +L+ D
Sbjct: 148 VL---------DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR---EELSYCD 190
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 27.1 bits (59), Expect = 4.6
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 563 QRAASVGGNSSSRTWGFPIIFGGKVQAGESPASRSPHE 600
Q G + W P G V+ GE+P + E
Sbjct: 30 QEKGIPGHPEKAGLWHIP---SGAVEDGENPQDAAVRE 64
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.3 bits (59), Expect = 4.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ VVG GKS++ + F+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVT 32
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.2 bits (59), Expect = 4.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
V+G+ +GKS +L + + F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKF 30
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.2 bits (59), Expect = 4.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
V ++G GK+S++ F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKF 28
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 4.7
Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 14/159 (8%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
+ + G GK+++++ +V R R+P R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIG----------FWTEEVRDPETKKRTGFRIITT 52
Query: 108 PGKRFFDFTKVRQEIMAETNKEAGSNRGVSEKQIGLKISSPNVLNMTLVDLPGITKVPVG 167
GK+ +K + + D + +
Sbjct: 53 EGKKKIFSSKFFTSKKLVGSYGVNVQ----YFEELAIPILERAYREAKKDRRKVIIIDEI 108
Query: 168 DQPTDIEARIRKMIMAYIRQENCIILAVSPANSDLATSD 206
+ + R ++ + N ++A P
Sbjct: 109 GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVK 147
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 130
Score = 26.6 bits (59), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 414 NATGPRNALFVPEVPFEVLVRRQIARLLDPCL---QCLRFVYDEL 455
+ + +P+ P ++ + QIA LLD C+ CL F Y L
Sbjct: 15 AYLNDLHEVLLPQYPQQIFI--QIAELLDLCVLDVDCLEFPYGIL 57
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.2 bits (59), Expect = 5.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
++G GKS +L + F P
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQP 30
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.0 bits (59), Expect = 5.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+ ++G GK+ VL F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAF 31
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.3 bits (59), Expect = 5.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
V ++G GKSS++ V F P
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDP 31
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 5.6
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ +VG +GK++ ++ + +F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEK 30
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.5 bits (59), Expect = 5.7
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 49 AVVGSQSSGKSSVLEAL 65
++G SGKSS+L+A+
Sbjct: 27 LIIGQNGSGKSSLLDAI 43
>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 203
Score = 27.1 bits (60), Expect = 5.8
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 361 SAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDI---RTAIQNATG 417
SA+ D R + +E+ + + + E ++ + I R + G
Sbjct: 84 SAVDDPRFPPVKLEEMD-----NLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEKG 138
Query: 418 PRNALFVPEVPFEVL--VRRQIARLL 441
+ L +P+VP E +A
Sbjct: 139 IYSGLLLPQVPVEWGWDEEEFLAETC 164
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 26.2 bits (58), Expect = 5.9
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 300 KKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQKYGDVMESKAEKETM 348
KK ++L+ + +LP L ++ + + L+ Y + + +
Sbjct: 46 KKQEEVLDDT-KRLLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAI 93
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.9 bits (58), Expect = 6.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+ ++G + GKSS++ V F
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQF 31
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.9 bits (58), Expect = 6.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ V+GS GKS++ V F+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVE 30
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 6.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
+ VVG GK+++L F
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCF 27
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.9 bits (58), Expect = 6.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDF 70
VVG + GK+ +L + F
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAF 34
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.7 bits (58), Expect = 7.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
+ ++G+ GKS +L +
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTN 33
>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
{Methanosarcina mazei [TaxId: 2209]}
Length = 199
Score = 26.7 bits (59), Expect = 7.0
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 361 SAMVDGRSQEISTKELSGGARIRYIFQSIFVKTLEEVDPCQDLTDEDI-RTAIQNATGPR 419
+A D R + E+ I + P + +I + + G
Sbjct: 81 AATRDPRFPTVEQDEM---KNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQGYC 137
Query: 420 NALFVPEVPFE 430
L +P+V E
Sbjct: 138 QGLLLPQVAPE 148
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.8 bits (58), Expect = 7.1
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRP 82
++G GKS +L + F+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF 41
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.9 bits (58), Expect = 7.2
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLP 72
VVG + GK+ +L + F
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPS 30
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein,
SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 25.5 bits (56), Expect = 8.3
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 24/92 (26%)
Query: 379 GARIRYIFQSIFVKTLEEVDPCQDLTDEDIRTAIQNATGPRNALFVPEVPFEVLVRRQIA 438
G +I +S+ T + +E + ++ AL +V ++ V++
Sbjct: 11 GRKITSALRSLSNAT--------IINEEVLNAMLKEV---CTALLEADVNIKL-VKQLRE 58
Query: 439 RL------------LDPCLQCLRFVYDELIKM 458
+ L+ V+ EL+K+
Sbjct: 59 NVKSAIDLEEMASGLNKRKMIQHAVFKELVKV 90
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 8.6
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
+ + G SGK+++ L L + +V R + EW E+ +L
Sbjct: 25 LGIDGLSRSGKTTLANQLS--QTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYL 82
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal
domains {Bacillus stearothermophilus [TaxId: 1422]}
Length = 265
Score = 26.7 bits (58), Expect = 9.0
Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 5/120 (4%)
Query: 220 RTIGVITKLDIMDRGTNACNFLLGKVVPLRLGYVGVVNRSQEDINKNRSMQDALAYEKNF 279
+ + + + TN F G L + V + ++ A
Sbjct: 144 AILTALADIPRPEAWTNEQLFSAGLERALSVETVRAAFTGAPPGPWHEKLRRRFASLPIK 203
Query: 280 FHDHPVYNG--LSDRCGI---PQLAKKLNQILEQHIRMVLPGLKSELHSRLNAVAKELQK 334
NG + + G P + + L+ I + + K +++ L + +K
Sbjct: 204 TKGELAVNGKDVIEWVGKPAGPWVKEALDAIWRAVVNGEVENEKERIYAWLMERNRTREK 263
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 9.3
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 48 VAVVGSQSSGKSSVLEALVGRDFLPRGCDICTRRPLALMLVNRPRNPGDDGREWAEFRHL 107
++G +GK+ LE + G +P I L + + ++ F H+
Sbjct: 29 FVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 108 PGKRFFDFTKVRQEIMAE 125
K+ +F ++I
Sbjct: 88 NVKKNLEFGMRMKKIKDP 105
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 26.6 bits (57), Expect = 9.6
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 28 RLQDIFSPVDGELSKISLPQVAVVGSQSSGKSSVLEALVGRDFLP 72
+++ S D + ++G SGKSS+L+A++ + P
Sbjct: 7 TVKNFRSHSDTVVE-FKEGINLIIGQNGSGKSSLLDAILVGLYWP 50
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.8 bits (59), Expect = 9.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 PQVAVVGSQSSGKSSVLEALV 66
P ++V GS +G S+V
Sbjct: 5 PIISVTGSSGAGTSTVKHTFD 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,575,907
Number of extensions: 122605
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 104
Length of query: 728
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 636
Effective length of database: 1,144,436
Effective search space: 727861296
Effective search space used: 727861296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.3 bits)