BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045703
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UGF|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis
 pdb|3UGF|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis
 pdb|3UGG|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis In Complex With 1-Kestose
 pdb|3UGG|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis In Complex With 1-Kestose
 pdb|3UGH|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis In Complex With 6-Kestose
 pdb|3UGH|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
           Terminalis In Complex With 6-Kestose
          Length = 546

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 126 NEALSKQLFDLQKQLKGFKYSLFDLNS-SLRKRINHPFKYGFKEGKAAC 173
           +E+ S +  D+ KQ+KGF   + D    ++R  ++H     F +G  +C
Sbjct: 451 DESRSSKASDVSKQVKGFTVPVLDGEKFTMRLLVDHSIVESFAQGGRSC 499


>pdb|3HI0|A Chain A, Crystal Structure Of Putative Exopolyphosphatase
           (17739545) From Agrobacterium Tumefaciens Str. C58
           (Dupont) At 2.30 A Resolution
 pdb|3HI0|B Chain B, Crystal Structure Of Putative Exopolyphosphatase
           (17739545) From Agrobacterium Tumefaciens Str. C58
           (Dupont) At 2.30 A Resolution
          Length = 508

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 85  GGRKFAFMNVPDLGC-----LPVMRIMNTEKNGSCLEKATSLAKLHNEALSKQL 133
           GG     +++ D  C     LP+  +  +E++   LEKA ++A+ H ++ +K L
Sbjct: 148 GGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLL 201


>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
           The Yeast Chd1 Chromatin Remodeler
          Length = 800

 Score = 26.9 bits (58), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 129 LSKQLFDLQKQLKGFKYSLFDLNSSLRKRINHPFKYGFKE-------GKAACCGTGQFRG 181
           L+K    L    KG  +SL ++ + L+K  NHP+ +   E       G          RG
Sbjct: 491 LTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550

Query: 182 VLSCGGK 188
           ++   GK
Sbjct: 551 LIMSSGK 557


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,525,957
Number of Sequences: 62578
Number of extensions: 311378
Number of successful extensions: 573
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 5
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)