BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045704
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 157/367 (42%), Gaps = 66/367 (17%)
Query: 28 TTVAPGSCLSLWDFSVDPGDHLFSDRFTCGLRCDRI---------VSGSARVTEITLDPV 78
T + GSC L +V F + + GL+ + + +SG+ V + D
Sbjct: 115 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 174
Query: 79 G------YPGSLISSKWNL---LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFK 129
G G+ IS ++ ++L LD+S N+FS +P L + L +SGN
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 130 CLIHASVGSLSQLEELYLDNNDFQGP----------RLEIRQNSISSEFPYL--GSLKSL 177
++ + ++L+ L + +N F GP L + +N + E P G+ +L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 178 SFLDASDNNITGKIPPTFPT---------------------------SLVELSVRNNNLV 210
+ LD S N+ G +PP F + L L + N
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 211 GNVPENFGDMEF-LQVLDLSRNKLSGTIFSVLFDHP--SLQQLTLSYNNFTSLQVPANMG 267
G +PE+ ++ L LDLS N SG I L +P +LQ+L L N FT ++P +
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLS 412
Query: 268 LTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF----ALKRLLWGG 323
S+LV+L LS+N L G +P+ L S+ L L L N G IP + L+ L+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 324 NYLFGPI 330
N L G I
Sbjct: 473 NDLTGEI 479
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 91 LLHLPTLDISDNSFSGSVPDSLSKLVRR-KRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
L L L +++N F+G +PD LS L LSGN F + GS S LE L L +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 150 NDFQG-------------PRLEIRQNSISSEFPYLGSLKSLSF----LDASDNNITGKIP 192
N+F G L++ N S E P SL +LS LD S NN +G I
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPIL 382
Query: 193 PTF----PTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
P +L EL ++NN G +P + L L LS N LSGTI S L L+
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308
L L + N ++P + L L L +N+L G +P+ L++ NL+ +SL +N+ G
Sbjct: 443 DLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 309 MIP 311
IP
Sbjct: 502 EIP 504
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 94 LPTLDISDNSFSGSVPDSLSKL-VRRKRLGLSGNSFKCLIHASV--GSLSQLEELYLDNN 150
L LD+S N FSG +P+SL+ L L LS N+F I ++ + L+ELYL NN
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 151 DFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPT--SLVELSVRNNN 208
F G P L + L L S N ++G IP + + L +L + N
Sbjct: 402 GFTGKIP-----------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 209 LVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGL 268
L G +P+ ++ L+ L L N L+G I S L + +L ++LS N T ++P +G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGR 509
Query: 269 TSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFG 328
L L+LS N G +PA L +L L L N F G IP + N++ G
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 141/355 (39%), Gaps = 71/355 (20%)
Query: 70 VTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFK 129
+ E+ L G+ G + + N L +L +S N SG++P SL L + + L L N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 130 CLIHASVGSLSQLEELYLDNNDFQGP------------RLEIRQNSISSEFP-YLGSLKS 176
I + + LE L LD ND G + + N ++ E P ++G L++
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 177 LSFLDASDNNITGKIPPTFPT--SLVELSVRNNNLVGNVPE-----------NF------ 217
L+ L S+N+ +G IP SL+ L + N G +P NF
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 218 ---------------GDM-EFLQVLDLSRNKLS------------GTIFSVLFDH-PSLQ 248
G++ EF + N+LS G S FD+ S+
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308
L +SYN S +P +G L L L +N++ G +P + + L+ L L NK G
Sbjct: 633 FLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 309 MIPTQFA----LKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDN---CLYMCPE 356
IP + L + N L GPI MG F ++N C Y P
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPE--MGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 94 LPTLDISDNSFSGSVPD--SLSKLVRRKRLGLSGNSFKCLIHASVG-SLSQLEELYLDNN 150
L +LD+S NS SG V SL K L +S N+ S G L+ LE L L N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 151 DFQGP---------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTF 195
G L I N IS + + +L FLD S NN + IP
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLG 217
Query: 196 PTS-LVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
S L L + N L G+ L++L++S N+ G I + SLQ L+L+
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAE 275
Query: 255 NNFTSLQVPANM-GLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ 313
N FT ++P + G L L+LS N G +P + S L +L+L N F G +P
Sbjct: 276 NKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 314 FALK 317
LK
Sbjct: 335 TLLK 338
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 157/367 (42%), Gaps = 66/367 (17%)
Query: 28 TTVAPGSCLSLWDFSVDPGDHLFSDRFTCGLRCDRI---------VSGSARVTEITLDPV 78
T + GSC L +V F + + GL+ + + +SG+ V + D
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177
Query: 79 G------YPGSLISSKWNL---LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFK 129
G G+ IS ++ ++L LD+S N+FS +P L + L +SGN
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 130 CLIHASVGSLSQLEELYLDNNDFQGP----------RLEIRQNSISSEFPYL--GSLKSL 177
++ + ++L+ L + +N F GP L + +N + E P G+ +L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 178 SFLDASDNNITGKIPPTFPT---------------------------SLVELSVRNNNLV 210
+ LD S N+ G +PP F + L L + N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 211 GNVPENFGDMEF-LQVLDLSRNKLSGTIFSVLFDHP--SLQQLTLSYNNFTSLQVPANMG 267
G +PE+ ++ L LDLS N SG I L +P +LQ+L L N FT ++P +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLS 415
Query: 268 LTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF----ALKRLLWGG 323
S+LV+L LS+N L G +P+ L S+ L L L N G IP + L+ L+
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 324 NYLFGPI 330
N L G I
Sbjct: 476 NDLTGEI 482
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 91 LLHLPTLDISDNSFSGSVPDSLSKLVRR-KRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
L L L +++N F+G +PD LS L LSGN F + GS S LE L L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 150 NDFQG-------------PRLEIRQNSISSEFPYLGSLKSLSF----LDASDNNITGKIP 192
N+F G L++ N S E P SL +LS LD S NN +G I
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPIL 385
Query: 193 PTF----PTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
P +L EL ++NN G +P + L L LS N LSGTI S L L+
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308
L L + N ++P + L L L +N+L G +P+ L++ NL+ +SL +N+ G
Sbjct: 446 DLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 309 MIP 311
IP
Sbjct: 505 EIP 507
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 112/240 (46%), Gaps = 17/240 (7%)
Query: 94 LPTLDISDNSFSGSVPDSLSKL-VRRKRLGLSGNSFKCLIHASV--GSLSQLEELYLDNN 150
L LD+S N FSG +P+SL+ L L LS N+F I ++ + L+ELYL NN
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 151 DFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPT--SLVELSVRNNN 208
F G P L + L L S N ++G IP + + L +L + N
Sbjct: 405 GFTGKIP-----------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 209 LVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGL 268
L G +P+ ++ L+ L L N L+G I S L + +L ++LS N T ++P +G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGR 512
Query: 269 TSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFG 328
L L+LS N G +PA L +L L L N F G IP + N++ G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 132/326 (40%), Gaps = 66/326 (20%)
Query: 70 VTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFK 129
+ E+ L G+ G + + N L +L +S N SG++P SL L + + L L N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 130 CLIHASVGSLSQLEELYLDNNDFQGP------------RLEIRQNSISSEFP-YLGSLKS 176
I + + LE L LD ND G + + N ++ E P ++G L++
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 177 LSFLDASDNNITGKIPPTFPT--SLVELSVRNNNLVGNVPE-----------NF------ 217
L+ L S+N+ +G IP SL+ L + N G +P NF
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 218 ---------------GDM-EFLQVLDLSRNKLS------------GTIFSVLFDH-PSLQ 248
G++ EF + N+LS G S FD+ S+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308
L +SYN S +P +G L L L +N++ G +P + + L+ L L NK G
Sbjct: 636 FLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 309 MIPTQFA----LKRLLWGGNYLFGPI 330
IP + L + N L GPI
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 105/244 (43%), Gaps = 24/244 (9%)
Query: 94 LPTLDISDNSFSGSVPD--SLSKLVRRKRLGLSGNSFKCLIHASVG-SLSQLEELYLDNN 150
L +LD+S NS SG V SL K L +S N+ S G L+ LE L L N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 151 DFQGP---------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTF 195
G L I N IS + + +L FLD S NN + IP
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLG 220
Query: 196 PTS-LVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
S L L + N L G+ L++L++S N+ G I + SLQ L+L+
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAE 278
Query: 255 NNFTSLQVPANM-GLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ 313
N FT ++P + G L L+LS N G +P + S L +L+L N F G +P
Sbjct: 279 NKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 314 FALK 317
LK
Sbjct: 338 TLLK 341
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
+L L++ N SGS+PD + L L LS N I ++ +L+ L E+ L NN+
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 153 QGPRLEIRQ 161
GP E+ Q
Sbjct: 717 SGPIPEMGQ 725
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 130/283 (45%), Gaps = 50/283 (17%)
Query: 78 VGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSF--KCLIHAS 135
+G P +L S W LPT D + ++ G + D+ ++ R L LSG + I +S
Sbjct: 18 LGNPTTL--SSW----LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71
Query: 136 VGSLSQLEELYLDN-NDFQGP------------RLEIRQNSISSEFP-YLGSLKSLSFLD 181
+ +L L LY+ N+ GP L I ++S P +L +K+L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 182 ASDNNITGKIPPTFPT--SLVELSVRNNNLVGNVPENFGDM-EFLQVLDLSRNKLSGTI- 237
S N ++G +PP+ + +LV ++ N + G +P+++G + + +SRN+L+G I
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 238 ---------------------FSVLF-DHPSLQQLTLSYNNFTSLQVPANMGLTSKLVAL 275
SVLF + Q++ L+ N+ + + +GL+ L L
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDL-GKVGLSKNLNGL 249
Query: 276 ELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKR 318
+L N + G LP L + L +L++ N G IP L+R
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 213 VPENFGDMEFLQVLDLSR-NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSK 271
+P + ++ +L L + N L G I + L L +++ N + +P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKT 126
Query: 272 LVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFA-----LKRLLWGGNYL 326
LV L+ SYN L G LP ++S+PNL ++ + N+ G IP + + N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 327 FGPISGHLMGMKPGFANVSLV 347
G I P FAN++L
Sbjct: 187 TGKI-------PPTFANLNLA 200
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 103/248 (41%), Gaps = 30/248 (12%)
Query: 82 GSLISSKWNLLHLPTLDISDN--SFSG--SVPDSLSKLVRRKRLGLSGNSFKCLIHASVG 137
GS+ K L L LD+S N SFSG S D + +R L +G ++ A+
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFM 396
Query: 138 SLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP- 196
L +L+ L DFQ L+ +EF SL+ L +LD S N F
Sbjct: 397 GLEELQHL-----DFQHSTLKR-----VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 197 -TSLVELSVRNNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
TSL L + N+ N N F + L LDLS+ +L + V LQ L +S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 255 NNFTSLQVPANMGLTSKLVALELSYNEL---GGFLPAYLASMP------NLSALSLEHNK 305
NN L L S L L+ S+N + G L + S+ N A EH K
Sbjct: 507 NNLLFLDSSHYNQLYS-LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565
Query: 306 FIGMIPTQ 313
F+ + Q
Sbjct: 566 FLQWVKEQ 573
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
K+P P+S + + N L +F + LQ LDLSR ++ L
Sbjct: 24 SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 249 QLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF--------------------- 285
L L+ N S + GLTS LVA+E L F
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 286 -LPAYLASMPNLSALSLEHN 304
LPAY +++ NL + L +N
Sbjct: 144 KLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 103/248 (41%), Gaps = 30/248 (12%)
Query: 82 GSLISSKWNLLHLPTLDISDN--SFSG--SVPDSLSKLVRRKRLGLSGNSFKCLIHASVG 137
GS+ K L L LD+S N SFSG S D + +R L +G ++ A+
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFM 391
Query: 138 SLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP- 196
L +L+ L DFQ L+ +EF SL+ L +LD S N F
Sbjct: 392 GLEELQHL-----DFQHSTLKR-----VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 441
Query: 197 -TSLVELSVRNNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
TSL L + N+ N N F + L LDLS+ +L + V LQ L +S+
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 501
Query: 255 NNFTSLQVPANMGLTSKLVALELSYNEL---GGFLPAYLASMP------NLSALSLEHNK 305
NN L L S L L+ S+N + G L + S+ N A EH K
Sbjct: 502 NNLLFLDSSHYNQLYS-LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 560
Query: 306 FIGMIPTQ 313
F+ + Q
Sbjct: 561 FLQWVKEQ 568
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
K+P P+S + + N L +F + LQ LDLSR ++ L
Sbjct: 19 SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 249 QLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF--------------------- 285
L L+ N S + GLTS LVA+E L F
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 286 -LPAYLASMPNLSALSLEHN 304
LPAY +++ NL + L +N
Sbjct: 139 KLPAYFSNLTNLVHVDLSYN 158
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 98/240 (40%), Gaps = 46/240 (19%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
HL + SD +VP +S L L N L L L L L NN
Sbjct: 34 HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLV-- 210
+I + + S L+ L L S N++ +IPP P+SLVEL + +N +
Sbjct: 91 S----KIHEKAFSP-------LRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKV 138
Query: 211 -----------------GNVPENFG------DMEFLQVLDLSRNKLSGTIFSVLFDHP-S 246
GN EN G D L L +S KL+G + D P +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG----IPKDLPET 194
Query: 247 LQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
L +L L +N ++++ ++ SKL L L +N++ L+ +P L L L++NK
Sbjct: 195 LNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 69 RVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSF 128
R++E L G P L + N LHL N + L + + RLGL N
Sbjct: 178 RISEAKL--TGIPKDLPET-LNELHL-----DHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 129 KCLIHASVGSLSQLEELYLDNNDF 152
+ + + S+ L L EL+LDNN
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKL 253
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPEN--FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247
+IP P EL + N+N +G + + FG + L L+L RN+L+G + +
Sbjct: 22 EIPRDIPLHTTEL-LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80
Query: 248 QQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
Q+L L N + +GL +L L L N++ +P + +L++L+L N F
Sbjct: 81 QELQLGENKIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 99/233 (42%), Gaps = 55/233 (23%)
Query: 94 LPTLDISDNS-----FSGSVPD---SLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145
L TLD+ DN+ F S+PD S +KLV ++ L+ N LIH S L L+ L
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN----LIHLSENRLENLDIL 419
Query: 146 YLDNNDFQGPRLEI---RQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVEL 202
Y + P L+I QN SS +G P+ SL +L
Sbjct: 420 YFL---LRVPHLQILILNQNRFSS--------------------CSGDQTPSENPSLEQL 456
Query: 203 SVRNNNL-----VGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257
+ N L + F + LQVL L+ N L+ V +L+ L+L+ N
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 258 TSL---QVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFI 307
T L +PAN+ + L++S N+L P S LS L + HNKFI
Sbjct: 517 TVLSHNDLPANLEI------LDISRNQLLAPNPDVFVS---LSVLDITHNKFI 560
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
F ++ L+VL+L+ NK++ + +LQ L LSYN L GL K+ ++
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYID 344
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHN-----KFIGMIPTQF 314
L N + + L L L N FI IP F
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 107 SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISS 166
S+ S ++ ++G N+ + +V L++L + Y N+ F + + +S
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNI-TFVSKAVXRLTKLRQFYXGNSPFVAENICEAWENENS 232
Query: 167 EFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVL 226
E+ + L + + D L ++ V N + +P + Q++
Sbjct: 233 EYAQQYKTEDLKWDNLKD--------------LTDVEVYNCPNLTKLPTFLKALPEXQLI 278
Query: 227 DLSRNK-LSGTI----FSVLFDHP---SLQQLTLSYNNFTSLQVPANMGLTSKLVALELS 278
+++ N+ +SG + L D P +Q + + YNN + V ++ KL LE
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECL 338
Query: 279 YNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314
YN+L G LPA+ S L++L+L +N+ I IP F
Sbjct: 339 YNQLEGKLPAF-GSEIKLASLNLAYNQ-ITEIPANF 372
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 166 SEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQV 225
++ L +L +L+ L+ S N I+ + TSL +LS +N + P ++ L+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 226 LDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF 285
LD+S NK+S SVL +L+ L ++ NN S P +G+ + L L L+ N+L
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDELSLNGNQLKDI 232
Query: 286 LPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGPISG 332
LAS+ NL+ L L +N+ + P L L G N + P++G
Sbjct: 233 --GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 46 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL+
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 157
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
S N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 158 FSSNQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 166 SEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQV 225
++ L +L +L+ L+ S N I+ + TSL +LS +N + P ++ L+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 226 LDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF 285
LD+S NK+S SVL +L+ L ++ NN S P +G+ + L L L+ N+L
Sbjct: 178 LDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDELSLNGNQLKDI 232
Query: 286 LPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGPISG 332
LAS+ NL+ L L +N+ + P L L G N + P++G
Sbjct: 233 --GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 46 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL+
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 157
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
S N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 158 FSSNQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 156 RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPE 215
RLE+ N+IS + L L SL L+ S N +T P
Sbjct: 133 RLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKP----------------------- 168
Query: 216 NFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVAL 275
++ L+ LD+S NK+S SVL +L+ L ++ NN S P +G+ + L L
Sbjct: 169 -LANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDEL 222
Query: 276 ELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGPIS 331
L+ N+L LAS+ NL+ L L +N+ + P L L G N + P++
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
Query: 332 G 332
G
Sbjct: 281 G 281
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 33/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 46 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN 157
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
S N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 158 FSSNQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 68/235 (28%)
Query: 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
NL +L TL + +N S P + + LV+ +RL LS N K L +L +EL +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHE 130
Query: 150 NDFQGPR------------LEIRQNSISS---EFPYLGSLKSLSFLDASDNNITGKIPPT 194
N+ R +E+ N + S E +K LS++ +D NIT IP
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 195 FPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
P PSL +L L
Sbjct: 190 LP------------------------------------------------PSLTELHLDG 201
Query: 255 NNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309
N T + + GL + L L LS+N + LA+ P+L L L +NK + +
Sbjct: 202 NKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC 130
T IT P G P SL LHL N + SL L +LGLS NS
Sbjct: 181 TNITTIPQGLPPSLTE-----LHL-----DGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 131 LIHASVGSLSQLEELYLDNNDF 152
+ + S+ + L EL+L+NN
Sbjct: 231 VDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 68/235 (28%)
Query: 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
NL +L TL + +N S P + + LV+ +RL LS N K L +L +EL +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHE 130
Query: 150 NDFQGPR------------LEIRQNSISS---EFPYLGSLKSLSFLDASDNNITGKIPPT 194
N+ R +E+ N + S E +K LS++ +D NIT IP
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 195 FPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
P PSL +L L
Sbjct: 190 LP------------------------------------------------PSLTELHLDG 201
Query: 255 NNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309
N T + + GL + L L LS+N + LA+ P+L L L +NK + +
Sbjct: 202 NKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC 130
T IT P G P SL LHL N + SL L +LGLS NS
Sbjct: 181 TNITTIPQGLPPSLTE-----LHL-----DGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 131 LIHASVGSLSQLEELYLDNNDF 152
+ + S+ + L EL+L+NN
Sbjct: 231 VDNGSLANTPHLRELHLNNNKL 252
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N+ + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N+ + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDH-PSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
G + L LDLS N+L +L P+L L +S+N TSL + A GL +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELY 130
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMG 336
L NEL P L P L LSL +N+ + +G L G
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL--------------------PAGLLNG 170
Query: 337 MKPGFANVSLVDNCLYMCPEMFF 359
++ + L +N LY P+ FF
Sbjct: 171 LE-NLDTLLLQENSLYTIPKGFF 192
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 13/161 (8%)
Query: 97 LDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPR 156
LD S+N + +V ++ L + L L N K LS++ E+ Q +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK--------ELSKIAEMTTQMKSLQ--Q 378
Query: 157 LEIRQNSISSEFPY--LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVP 214
L+I QNS+S + KSL L+ S N +T I P + L + +N + ++P
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIP 437
Query: 215 ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYN 255
+ +E LQ L+++ N+L + SLQ++ L N
Sbjct: 438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N+ + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 132
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------------------PAGLLNGL 172
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 173 E-NLDTLLLQENSLYTIPKGFF 193
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 23/142 (16%)
Query: 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277
G + L LDLS N+L ++ + P+L L +S+N TSL + A GL +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYL 131
Query: 278 SYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGM 337
NEL P L P L LSL +N + +G L G+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTEL--------------------PAGLLNGL 171
Query: 338 KPGFANVSLVDNCLYMCPEMFF 359
+ + L +N LY P+ FF
Sbjct: 172 E-NLDTLLLQENSLYTIPKGFF 192
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257
L LS+ NNNL + F LQ L LS N+L+ S++ PSL +SYN
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLL 204
Query: 258 TSLQV-------------------PANMGLT------------------SKLVALELSYN 280
++L + P N+ LT LV ++LSYN
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264
Query: 281 ELGGFLPAYLASMPNLSALSLEHNKFIGM------IPTQFALKRLLWGGNYLFGPISGHL 334
EL + M L L + +N+ + + IPT LK L N+L H+
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT---LKVLDLSHNHLL-----HV 316
Query: 335 MGMKPGF 341
+P F
Sbjct: 317 ERNQPQF 323
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV 273
P F ++ L VL L RN LS + + P L L++S NN ++ TS L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQ 174
Query: 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGG---NYLFGPI 330
L+LS N L L+ +P+L ++ +N + + A++ L N + GP+
Sbjct: 175 NLQLSSNRLTH---VDLSLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPV 230
Query: 331 SGHLMGMKPGFANVS 345
+ L +K N++
Sbjct: 231 NVELTILKLQHNNLT 245
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257
L LS+ NNNL + F LQ L LS N+L+ S++ PSL +SYN
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLL 198
Query: 258 TSLQV-------------------PANMGLT------------------SKLVALELSYN 280
++L + P N+ LT LV ++LSYN
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258
Query: 281 ELGGFLPAYLASMPNLSALSLEHNKFIGM------IPTQFALKRLLWGGNYLFGPISGHL 334
EL + M L L + +N+ + + IPT LK L N+L H+
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT---LKVLDLSHNHLL-----HV 310
Query: 335 MGMKPGF 341
+P F
Sbjct: 311 ERNQPQF 317
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV 273
P F ++ L VL L RN LS + + P L L++S NN ++ TS L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQ 168
Query: 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGG---NYLFGPI 330
L+LS N L L+ +P+L ++ +N + + A++ L N + GP+
Sbjct: 169 NLQLSSNRLTH---VDLSLIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPV 224
Query: 331 SGHLMGMKPGFANVS 345
+ L +K N++
Sbjct: 225 NVELTILKLQHNNLT 239
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 22/215 (10%)
Query: 121 LGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY--LGSLK--- 175
L +S N+ + + + + + L+ L L +N L + + + Y L +L
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205
Query: 176 SLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG-----NVPENFGDMEFLQVLDLSR 230
++ LDAS N+I P L L +++NNL N P G +E +DLS
Sbjct: 206 AVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYP---GLVE----VDLSY 257
Query: 231 NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL 290
N+L ++ L++L +S N +L + T K+ L+LS+N L +
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV--LDLSHNHLLH-VERNQ 314
Query: 291 ASMPNLSALSLEHNKFIGM-IPTQFALKRLLWGGN 324
L L L+HN + + + T LK L N
Sbjct: 315 PQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 214 PENFG----DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLT 269
P+NF + ++ DLS++K+ + SV L+QLTL+ N + A GLT
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
L+ L LS N LG ++ L L L +N
Sbjct: 324 -HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 89 WNLLHLPTLDISDNSFSGSVPDSL-SKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147
W L HL L++S N F GS+ + L + + L LS N + L S L L+EL L
Sbjct: 320 WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 148 DNNDFQ 153
D N +
Sbjct: 379 DTNQLK 384
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 156 RLEIRQNSIS--SEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213
RLE+ N+IS S L SL+ LSF N +T P
Sbjct: 138 RLELSSNTISDISALSGLTSLQQLSF----GNQVTDLKP--------------------- 172
Query: 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV 273
++ L+ LD+S NK+S SVL +L+ L ++ NN S P +G+ + L
Sbjct: 173 ---LANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLD 224
Query: 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGP 329
L L+ N+L LAS+ NL+ L L +N+ + P L L G N + P
Sbjct: 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 282
Query: 330 ISG 332
++G
Sbjct: 283 LAG 285
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 51 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL+
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 162
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 163 FG-NQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 156 RLEIRQNSIS--SEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213
RLE+ N+IS S L SL+ LSF N +T P
Sbjct: 137 RLELSSNTISDISALSGLTSLQQLSF----GNQVTDLKP--------------------- 171
Query: 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV 273
++ L+ LD+S NK+S SVL +L+ L ++ NN S P +G+ + L
Sbjct: 172 ---LANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLD 223
Query: 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGP 329
L L+ N+L LAS+ NL+ L L +N+ + P L L G N + P
Sbjct: 224 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 281
Query: 330 ISG 332
++G
Sbjct: 282 LAG 284
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 50 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL+
Sbjct: 104 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 161
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 162 FG-NQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 157 LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPEN 216
L + N I P L SL SL + A N IT P T L L + NN + P
Sbjct: 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP-- 238
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
++ L L++ N++S + + D L+ L + N + + V N+ S+L +L
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDISVLNNL---SQLNSLF 293
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
L+ N+LG + + NL+ L L N + P
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 90/198 (45%), Gaps = 26/198 (13%)
Query: 87 SKWNLLHLPTLDISDN--SFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEE 144
S+ +L L LD+S N SF G S K L LS N + +G L QLE
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEH 400
Query: 145 LYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVEL 202
L DFQ L+ SEF SL++L +LD S + F +SL L
Sbjct: 401 L-----DFQHSNLKQM-----SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 203 SVRNNNLVGN-VPENFGDMEFLQVLDLSR---NKLSGTIFSVLFDHPSLQQLTLSYNNFT 258
+ N+ N +P+ F ++ L LDLS+ +LS T F+ L SLQ L ++ N
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQVLNMASNQLK 507
Query: 259 SLQVPANMGLTSKLVALE 276
S VP G+ +L +L+
Sbjct: 508 S--VPD--GIFDRLTSLQ 521
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 34/152 (22%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 21 KIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 286 -----LPAYLASMPNLSALSLEHNKFIGMIPT 312
LP Y +++ NL L L NK + T
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 174 LKSLSFLDASDNNITGK---IPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSR 230
L SL FLD S N ++ K F T+ ++ + N V + NF +E L+ LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 231 NKLSG-TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL------SYNELG 283
+ L + FSV +L L +S+ T +V N G+ + L +LE+ S+ E
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISH---THTRVAFN-GIFNGLSSLEVLKMAGNSFQE-- 459
Query: 284 GFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314
FLP + NL+ L L + + PT F
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 43/187 (22%)
Query: 191 IPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250
+P P + EL + N VP+ + + L ++DLS N++S
Sbjct: 25 LPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS---------------- 67
Query: 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMI 310
TLS +F+++ ++L+ L LSYN L P + +L LSL H I ++
Sbjct: 68 TLSNQSFSNM---------TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL-HGNDISVV 117
Query: 311 PTQF-----ALKRLLWGGNYLFGPISGHLMG-------MKPGFANVS----LVDNCLYMC 354
P AL L G N L+ + + +PG A + + D L
Sbjct: 118 PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTT 177
Query: 355 PEMFFFC 361
P F C
Sbjct: 178 PSKKFTC 184
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 70 VTEITLDPVGYPGSLISSKW-NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSF 128
VTE+ LD G +L+ + N HL +D+S+N S S S + + L LS N
Sbjct: 33 VTELYLD--GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 129 KCLIHASVGSLSQLEELYLDNNDF 152
+C+ + L L L L ND
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
+L HL L +S N + + L L L N + + + LS+L+EL+L N
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 150 NDFQG---------PRL------EIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPT 194
N + P L E+++ S SE + G L +L +L+ + N+ +IP
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLR-EIPNL 203
Query: 195 FP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLS 253
P L EL + N+L P +F + LQ L + ++++ + + SL ++ L+
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 254 YNNFTSL 260
+NN T L
Sbjct: 264 HNNLTLL 270
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 71/188 (37%), Gaps = 14/188 (7%)
Query: 119 KRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLS 178
K+L L N L + L++L LYL++N Q I LK+L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----------FKELKNLE 88
Query: 179 FLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGT 236
L +DN + F +L EL + N L P F + L L L N+L
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 237 IFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNL 296
V SL++L L YNN ++L L+L N+L S+ L
Sbjct: 149 PKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 297 SALSLEHN 304
L L+ N
Sbjct: 208 KMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 206 NNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA 264
N+N + +P F +++ L+ L ++ NKL V +L +L L N SL P
Sbjct: 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP-PR 127
Query: 265 NMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
+KL L L YNEL + +L L L +N+
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
++ L+ LD+S NK+S SVL +L+ L ++ NN S P +G+ + L L
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDELS 222
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGPISG 332
L+ N+L LAS+ NL+ L L +N+ + P L L G N + P++G
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 46 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN 157
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 158 FG-NQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
++ L+ LD+S NK+S SVL +L+ L ++ NN S P +G+ + L L
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDELS 222
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--FALKRLLWGGNYL--FGPISG 332
L+ N+L LAS+ NL+ L L +N+ + P L L G N + P++G
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 152 FQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211
Q RL I+ SI YL +L ++F S+N +T P T LV++ + NN +
Sbjct: 46 LQADRLGIK--SIDG-VEYLNNLTQINF---SNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 212 NVP--------------------ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
P + ++ L L+LS N +S S L SLQQL
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLN 157
Query: 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N T L+ AN+ + L L++S N++ + LA + NL +L +N+ + P
Sbjct: 158 FG-NQVTDLKPLANL---TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 197 TSLVELSVRNNNLVGNVPENFGDMEF--LQVLDLSRNKLSGT---IFSVLFDHPSLQQLT 251
TS+ LS+ NN L+ F +++ L LDLS N L FS L PSL+ L+
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYL---PSLRYLS 278
Query: 252 LSYNNFTSLQVPANMGLTS-KLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMI 310
L YNN L + GL++ + ++L+ ++ + LAS PN+ S + K++ +
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQS----VSLASHPNIDDFSFQWLKYLEYL 334
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 246 SLQQLTLSYNNFTSLQVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
S+Q L+L+ N + GL + L L+LSYN L + +P+L LSLE+N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 305 KFIGMIPTQF 314
+ P F
Sbjct: 283 NIQRLSPRSF 292
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Query: 191 IPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250
IP P+++ L++ +N L P NF L +LD N +S + P L+ L
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
L +N + + + L L+L N + + NL L L HN
Sbjct: 79 NLQHNELSQIS-DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 243 DHPS-LQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301
D PS + L L++N L P N S+L L+ +N + P +P L L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLP-PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 302 EHNKF 306
+HN+
Sbjct: 81 QHNEL 85
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 63/134 (47%), Gaps = 20/134 (14%)
Query: 102 NSFSGSVPDSLSKLVRRKRLGLSGNSF--------KCLIHASVGSLSQLEELYL----DN 149
N+ SG+ D S + ++ L G + +CLI+ S QL L L DN
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FSELQLNRLNLSSLPDN 77
Query: 150 NDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNL 209
Q LEI QN++ S P L + SL +LDA DN ++ P P SL L V NN L
Sbjct: 78 LPPQITVLEITQNALIS-LPELPA--SLEYLDACDNRLSTL--PELPASLKHLDVDNNQL 132
Query: 210 VGNVPENFGDMEFL 223
+PE +E++
Sbjct: 133 TX-LPELPALLEYI 145
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 157 LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNL--VGNVP 214
L++ N ++ P L +L L +++A +N +T P PTSL LSVRNN L + +P
Sbjct: 125 LDVDNNQLTX-LPELPAL--LEYINADNNQLTXL--PELPTSLEVLSVRNNQLTFLPELP 179
Query: 215 ENFGDMEFLQVLDLSRNKLSG 235
E+ L+ LD+S N L
Sbjct: 180 ES------LEALDVSTNLLES 194
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
KIP P S L + N L +F LQVLDLSR ++ L
Sbjct: 23 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 82
Query: 250 LTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF---------------------- 285
L L+ N SL + A GL+S KLVALE + L F
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Query: 286 LPAYLASMPNLSALSLEHNKF 306
LP Y +++ NL L L NK
Sbjct: 143 LPEYFSNLTNLEHLDLSSNKI 163
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 121 LGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFL 180
L LS + + + SLS L L L N Q L F L SL+ L L
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--------GAFSGLSSLQKLVAL 110
Query: 181 DASDNNITGKIPPTFPTSLVELSVRNNNLVG-NVPENFGDMEFLQVLDLSRNKLSG---T 236
+ + ++ P +L EL+V +N + +PE F ++ L+ LDLS NK+ T
Sbjct: 111 ETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 237 IFSVLFDHP 245
VL P
Sbjct: 170 DLRVLHQMP 178
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 34/146 (23%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 22 KIPDNLP-----FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 286 -----LPAYLASMPNLSALSLEHNKF 306
LP Y +++ NL L L NK
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 34/146 (23%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 23 KIPDNLP-----FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 77
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 78 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 137
Query: 286 -----LPAYLASMPNLSALSLEHNKF 306
LP Y +++ NL L L NK
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 38/281 (13%)
Query: 42 SVDPG--DHLFSDRFTCGLRCDRIVSGSARVTEITLDPVG-YPGSLISSKWNLLHLPTLD 98
+V+PG ++LF+ R T GLR +R+ L P+G + G L +L LD
Sbjct: 70 AVEPGAFNNLFNLR-TLGLRSNRL----------KLIPLGVFTG--------LSNLTKLD 110
Query: 99 ISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQG-PR- 156
IS+N + L K L + N + H + L+ LE+L L+ + P
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 157 ----------LEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPT--FPTSLVELS 203
L +R +I++ Y L L L+ S + P + +L LS
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 204 VRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVP 263
+ + NL + +L+ L+LS N +S S+L + LQ++ L ++
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 264 ANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
A GL + L L +S N+L + S+ NL L L+ N
Sbjct: 291 AFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 32/254 (12%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND- 151
HL L++++N S P + + L + LGL N K + LS L +L + N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 152 -------FQG----PRLEIRQNSI----SSEFPYLGSLKSLSFLDASDNNITGKIPPTFP 196
FQ LE+ N + F L SL+ L+ + +I PT
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-----PTEA 171
Query: 197 TS----LVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252
S L+ L +R+ N+ +F + L+VL++S T+ +L L++
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231
Query: 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPT 312
++ N T++ A L L L LSYN + + L + L + L + + P
Sbjct: 232 THCNLTAVPYLAVRHLVY-LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 313 QFALKRLLWGGNYL 326
F G NYL
Sbjct: 291 AFR------GLNYL 298
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 121 LGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQG-----PRLEIRQNSISSEFPYLGSLK 175
LG+S N + L S ++ + +DNN + P LE + +++ L L+
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKI--IDVDNNSLKKLPDLPPSLEFIA-AGNNQLEELPELQ 192
Query: 176 SLSFLDA--SDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKL 233
+L FL A +DNN K+P P SL E V NN++ +PE ++ FL + + N L
Sbjct: 193 NLPFLTAIYADNNSLKKLP-DLPLSL-ESIVAGNNILEELPE-LQNLPFLTTI-YADNNL 248
Query: 234 SGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF--LPAYLA 291
T+ + PSL+ L + N T L L L L++S N G LP L
Sbjct: 249 LKTLPDL---PPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLSELPPNLY 300
Query: 292 SM--------------PNLSALSLEHNKFIGMIPTQFALKRLLWGGNYL 326
+ P+L L++ +NK I + L+RL+ N+L
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL 349
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 34/152 (22%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 45 KIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159
Query: 286 -----LPAYLASMPNLSALSLEHNKFIGMIPT 312
LP Y +++ NL L L NK + T
Sbjct: 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 94 LPTLDISDNSFSGS-VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L L ++ NSF + +PD ++L L LS + L + SLS L+ L + +N+F
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNI-TGKIPPT--FPTSLVELSVRNNNL 209
FPY L SL LD S N+I T K FP+SL L++ N+
Sbjct: 531 FSL----------DTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Query: 210 V 210
Sbjct: 580 A 580
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 174 LKSLSFLDASDNNITGK---IPPTFPT-SLVELSVRNNNLVGNVPENFGDMEFLQVLDLS 229
L SL FLD S N ++ K F T SL L + N ++ + NF +E L+ LD
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 428
Query: 230 RNKLSG-TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL------SYNEL 282
+ L + FSV +L L +S+ T +V N G+ + L +LE+ S+ E
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISH---THTRVAFN-GIFNGLSSLEVLKMAGNSFQE- 483
Query: 283 GGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314
FLP + NL+ L L + + PT F
Sbjct: 484 -NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 17/163 (10%)
Query: 97 LDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASV--GSLSQLEELYLDNNDFQG 154
L+ + N F+ SV S L R + L L N K ++ ++S LE L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL--------- 408
Query: 155 PRLEIRQNSISSEF--PYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGN 212
++ NS++S +S+ L+ S N +TG + P + L + NN ++ +
Sbjct: 409 ---DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-S 464
Query: 213 VPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYN 255
+P++ ++ LQ L+++ N+L V SLQ + L N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 9/157 (5%)
Query: 176 SLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSG 235
++ L SD + P P+S L+ N +V + ++ LQ L L RN L
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391
Query: 236 TIFSVLF--DHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM 293
L + SL+ L +S N+ S ++ L LS N L G +
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFRCLP 449
Query: 294 PNLSALSLEHNKFIGMIPTQF----ALKRLLWGGNYL 326
P + L L HN I IP AL+ L N L
Sbjct: 450 PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQL 485
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 164 ISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFL 223
+ S P+ L+S+ +D S+ N+T +P P LS+ N++ + + L
Sbjct: 22 VGSMTPFSNELESM--VDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSEL 78
Query: 224 QVLDLSRNKLSGTIFSV-LFDH--------------------PSLQQLTLSYNNFTSLQV 262
+VL LS N++ F V LF+ SL+ L LS+N+F L V
Sbjct: 79 RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPV 138
Query: 263 PANMGLTSKLVALELS 278
G +KL L LS
Sbjct: 139 CKEFGNLTKLTFLGLS 154
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 34/146 (23%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 22 KIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 76
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 286 -----LPAYLASMPNLSALSLEHNKF 306
LP Y +++ NL L L NK
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 34/152 (22%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF-----LQVLDLSRNKLSGTIFSVLFDH 244
KIP P S +N +L N + G F LQVLDLSR ++
Sbjct: 21 KIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75
Query: 245 PSLQQLTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF----------------- 285
L L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 286 -----LPAYLASMPNLSALSLEHNKFIGMIPT 312
LP Y +++ NL L L NK + T
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 94 LPTLDISDNSFSGS-VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L L ++ NSF + +PD ++L L LS + L + SLS L+ L + +N+F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNI-TGKIPPT--FPTSLVELSVRNNNL 209
FPY L SL LD S N+I T K FP+SL L++ N+
Sbjct: 507 FSL----------DTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Query: 210 V 210
Sbjct: 556 A 556
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 174 LKSLSFLDASDNNITGK---IPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSR 230
L SL FLD S N ++ K F T+ ++ + N V + NF +E L+ LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 231 NKLSG-TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL------SYNELG 283
+ L + FSV +L L +S+ T +V N G+ + L +LE+ S+ E
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISH---THTRVAFN-GIFNGLSSLEVLKMAGNSFQE-- 459
Query: 284 GFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314
FLP + NL+ L L + + PT F
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
KIP P S L + N L +F LQVLDLSR ++ L
Sbjct: 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Query: 250 LTLSYNNFTSLQVPANMGLTS--KLVALELSYNELGGF---------------------- 285
L L+ N SL + A GL+S KLVA+E + L F
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 286 LPAYLASMPNLSALSLEHNKF 306
LP Y +++ NL L L NK
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI 161
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 178 SFLDASDNNIT---GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLS 234
+ LD S NN++ + PT T+L L + +N+L E F + L+ LDLS N L
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 235 GTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLA--- 291
T+ LF ++ L YNN + ++L L LS N++ F P L
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-PVELIKDG 159
Query: 292 -SMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLF 327
+P L L L NK + +P K W N L+
Sbjct: 160 NKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLY 195
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
++P + P + L+++ N++ + F + L++L LS+N + PSL
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLN 86
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAY-LASMPNLSALSLEHNKFI 307
L L N T++ A SKL L L N + +P+Y +P+L L L K +
Sbjct: 87 TLELFDNRLTTVPTQA-FEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRL 144
Query: 308 GMI 310
I
Sbjct: 145 EYI 147
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 94 LPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC-----------LIHASVGSLSQL 142
L TL++ DN + + L + + L L N + L +G L +L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 143 EELYLDNNDFQGPRLEIRQNSIS----SEFPYLGSLKSLSFLDASDNNITGKIPPTFP-- 196
E Y+ F+G + +R ++ + P L +L L L+ S N + P +F
Sbjct: 145 E--YISEAAFEG-LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 197 TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYN 255
TSL +L + + + F D++ L+ L+LS N L + L+++ L++N
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 214 PENFG----DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLT 269
P+NF + ++ DLS++K+ + SV L+QLTL+ N + A GLT
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLL 320
L L L N+L + +L + L N + P L R L
Sbjct: 324 -HLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 373
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 22/233 (9%)
Query: 97 LDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN----DF 152
LD++ +G +P + + K+L L+ NSF L + S L +LY+ N D
Sbjct: 282 LDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDL 340
Query: 153 QGPRLEIRQNSISSEFPY------------LGSLKSLSFLDASDNNITGKIPPTFPT--S 198
LE +N + + L +L+ L +L+ S N G F
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 199 LVELSVRNNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257
L L V +L P + F ++ L+VL+LS L + +L L+ L L N+F
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 258 TSLQVPAN--MGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308
+ + + L L LS L + N++ L L HN G
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
++P + P + L+++ N++ + F + L++L LS+N + PSL
Sbjct: 27 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLN 86
Query: 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAY-LASMPNLSALSLEHNKFI 307
L L N T++ A L SKL L L N + +P+Y +P+L L L K +
Sbjct: 87 TLELFDNRLTTVPTQAFEYL-SKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRL 144
Query: 308 GMI 310
I
Sbjct: 145 EYI 147
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 16/218 (7%)
Query: 99 ISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND-FQGPRL 157
++D+S ++ K L LSGN + A + ++LE L L +N ++ L
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 158 E----IRQNSISSEFPYLGSL---KSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLV 210
E +R +++ Y+ L S+ L A++NNI+ ++ + + + NN +
Sbjct: 77 ESLSTLRTLDLNNN--YVQELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKIT 133
Query: 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVL-FDHPSLQQLTLSYNNFTSLQVPANMGLT 269
+ G +Q LDL N++ F+ L +L+ L L YN ++ +
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VF 190
Query: 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFI 307
+KL L+LS N+L F+ S ++ +SL +NK +
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 43/244 (17%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L +LD+ N+ S P+ KL K L L N L + + L EL+L +N
Sbjct: 60 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITG-KIPPTFPTSLVELSVRNNNLVG 211
Q +I+ N P++ K+L LD S N ++ K+ ++ + +NN +
Sbjct: 120 Q----KIKNN------PFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 168
Query: 212 NVPENFGDM---EFLQVLDLSRNKLS----------GTIFSVLFDH-------------- 244
+ D+ L+ L+LS N++ G +F + ++
Sbjct: 169 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 228
Query: 245 ---PSLQQLTLSYNNFTSLQVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALS 300
S++ L+LS + ++ +GL + L L+LSYN L A +P L
Sbjct: 229 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 301 LEHN 304
LE+N
Sbjct: 289 LEYN 292
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 108 VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167
VPD L + L L+ N + L A+ SQL L ++ N+IS
Sbjct: 29 VPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSL------------DVGFNTISKL 74
Query: 168 FPYL-GSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNL--VGNVPENFGDMEF 222
P L L L L+ N ++ TF T+L EL + +N++ + N P F +
Sbjct: 75 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKN 132
Query: 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNE 281
L LDLS N LS T +LQ+L LS N +L+ ++ S L LELS N+
Sbjct: 133 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 192
Query: 282 LGGFLPAYLASMPNLSALSL 301
+ F P ++ L L L
Sbjct: 193 IKEFSPGCFHAIGRLFGLFL 212
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
++P PT++ L++ +N L NF L LD+ N +S + P L+
Sbjct: 28 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 87
Query: 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
L L +N + L + L L L N + NL L L HN
Sbjct: 88 LNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 43/244 (17%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L +LD+ N+ S P+ KL K L L N L + + L EL+L +N
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITG-KIPPTFPTSLVELSVRNNNLVG 211
Q +I+ N P++ K+L LD S N ++ K+ ++ + +NN +
Sbjct: 110 Q----KIKNN------PFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Query: 212 NVPENFGDM---EFLQVLDLSRNKLS----------GTIFSVLFDH-------------- 244
+ D+ L+ L+LS N++ G +F + ++
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218
Query: 245 ---PSLQQLTLSYNNFTSLQVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALS 300
S++ L+LS + ++ +GL + L L+LSYN L A +P L
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 301 LEHN 304
LE+N
Sbjct: 279 LEYN 282
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 108 VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167
VPD L + L L+ N + L A+ SQL L ++ N+IS
Sbjct: 19 VPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSL------------DVGFNTISKL 64
Query: 168 FPYL-GSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNL--VGNVPENFGDMEF 222
P L L L L+ N ++ TF T+L EL + +N++ + N P F +
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKN 122
Query: 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNE 281
L LDLS N LS T +LQ+L LS N +L+ ++ S L LELS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 282 LGGFLPAYLASMPNLSALSL 301
+ F P ++ L L L
Sbjct: 183 IKEFSPGCFHAIGRLFGLFL 202
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
++P PT++ L++ +N L NF L LD+ N +S + P L+
Sbjct: 18 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77
Query: 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
L L +N + L + L L L N + NL L L HN
Sbjct: 78 LNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 43/244 (17%)
Query: 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L +LD+ N+ S P+ KL K L L N L + + L EL+L +N
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITG-KIPPTFPTSLVELSVRNNNLVG 211
Q +I+ N P++ K+L LD S N ++ K+ ++ + +NN +
Sbjct: 115 Q----KIKNN------PFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 163
Query: 212 NVPENFGDM---EFLQVLDLSRNKLS----------GTIFSVLFDH-------------- 244
+ D+ L+ L+LS N++ G +F + ++
Sbjct: 164 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 223
Query: 245 ---PSLQQLTLSYNNFTSLQVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALS 300
S++ L+LS + ++ +GL + L L+LSYN L A +P L
Sbjct: 224 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 301 LEHN 304
LE+N
Sbjct: 284 LEYN 287
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 108 VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167
VPD L + L L+ N + L A+ SQL L ++ N+IS
Sbjct: 24 VPDDLPTNI--TVLNLTHNQLRRLPAANFTRYSQLTSL------------DVGFNTISKL 69
Query: 168 FPYL-GSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNL--VGNVPENFGDMEF 222
P L L L L+ N ++ TF T+L EL + +N++ + N P F +
Sbjct: 70 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP--FVKQKN 127
Query: 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNE 281
L LDLS N LS T +LQ+L LS N +L+ ++ S L LELS N+
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 187
Query: 282 LGGFLPAYLASMPNLSALSL 301
+ F P ++ L L L
Sbjct: 188 IKEFSPGCFHAIGRLFGLFL 207
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
++P PT++ L++ +N L NF L LD+ N +S + P L+
Sbjct: 23 QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 82
Query: 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304
L L +N + L + L L L N + NL L L HN
Sbjct: 83 LNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 157 LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPEN 216
LE++ N I+ P L +L ++ L+ S N + S+ L + + + P
Sbjct: 74 LELKDNQITDLTP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-- 130
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
+ LQVL L N+++ S L +LQ L++ N L AN+ SKL L
Sbjct: 131 LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNNQVNDLTPLANL---SKLTTLR 185
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N++ P LAS+PNL + L+ N+ + P
Sbjct: 186 ADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 97 LDISDNSFSGSVPDSLSKLVRRKRLGLSGN------------SFKCLIHAS--------V 136
L++ DN + P L L + L LSGN S K L S +
Sbjct: 74 LELKDNQITDLTP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 131
Query: 137 GSLSQLEELYLDNNDFQG----------PRLEIRQNSISSEFPYLGSLKSLSFLDASDNN 186
LS L+ LYLD N L I N ++ P L +L L+ L A DN
Sbjct: 132 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP-LANLSKLTTLRADDNK 190
Query: 187 ITGKIPPTFPTSLVELSVRNNNL 209
I+ P +L+E+ +++N +
Sbjct: 191 ISDISPLASLPNLIEVHLKDNQI 213
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 151 DFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLV 210
D QG L+ + I ++ L L+S SD G T L L++ N L
Sbjct: 20 DCQGKSLDSVPSGIPADTEKL-DLQSTGLATLSDATFRG------LTKLTWLNLDYNQLQ 72
Query: 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDH-PSLQQLTLSYNNFTSLQVPANMGLT 269
F D+ L L L+ N+L+ V FDH L +L L N SL LT
Sbjct: 73 TLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
KL L L+ N+L + NL LSL N+
Sbjct: 132 -KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 248 QQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF- 306
++L L +L GLT KL L L YN+L + L L L +N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 307 ---IGMIPTQFALKRLLWGGNYLFGPISG 332
+G+ L +L GGN L SG
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 72/188 (38%), Gaps = 43/188 (22%)
Query: 62 RIVSGSARVTEI----------TLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDS 111
+I +G + VT+ TL G + I L +L L++ DN + P
Sbjct: 23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-- 80
Query: 112 LSKLVRRKRLGLSGN------------SFKCLIHAS--------VGSLSQLEELYLDNND 151
L L + L LSGN S K L S + LS L+ LYLD N
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140
Query: 152 FQG----------PRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVE 201
L I +S P L +L L+ L A DN I+ P +L+E
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIE 199
Query: 202 LSVRNNNL 209
+ ++NN +
Sbjct: 200 VHLKNNQI 207
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 157 LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPEN 216
LE++ N I+ P L +L ++ L+ S N + S+ L + + + P
Sbjct: 68 LELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-- 124
Query: 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276
+ LQVL L N+++ S L +LQ L++ + L AN+ SKL L+
Sbjct: 125 LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLANL---SKLTTLK 179
Query: 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311
N++ P LAS+PNL + L++N+ + P
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149
+L HL L + NS + + L L L N + + LS+L EL+L N
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 150 NDFQG---------PRL------EIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPT 194
N + P L E+++ SE + G L +L +L+ NI T
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMPNLT 215
Query: 195 FPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254
L EL + N+ P +F + L+ L + +++S + SL +L L++
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275
Query: 255 NNFTSL 260
NN +SL
Sbjct: 276 NNLSSL 281
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
++P P++ L++ NN+ + F + L+VL L RN + SL
Sbjct: 68 EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127
Query: 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAY-LASMPNLSALSL 301
L L ++N+ ++ SKL L L N + +P+Y +P+L L L
Sbjct: 128 LEL-FDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDL 178
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 63/157 (40%), Gaps = 10/157 (6%)
Query: 151 DFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLV 210
D QG L+ + I ++ L L+S SD G T L L++ N L
Sbjct: 20 DCQGKSLDSVPSGIPADTEKL-DLQSTGLATLSDATFRG------LTKLTWLNLDYNQLQ 72
Query: 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDH-PSLQQLTLSYNNFTSLQVPANMGLT 269
F D+ L L L+ N+L+ V FDH L +L L N SL LT
Sbjct: 73 TLSAGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
KL L L+ N+L + NL LSL N+
Sbjct: 132 -KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 248 QQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF- 306
++L L +L GLT KL L L YN+L + L L L +N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 307 ---IGMIPTQFALKRLLWGGNYLFGPISG 332
+G+ L +L GGN L SG
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 184 DNNITGKIPPTFPT--SLVELSVRNNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSV 240
DN IT P F + +L EL + +N L G +P F + L VLDL N+L+ + S
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSA 106
Query: 241 LFDH-PSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNEL 282
+FD L++L + N T L P + + L L L N+L
Sbjct: 107 VFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQL 147
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 37/216 (17%)
Query: 94 LPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQ 153
L LD++ G +P + L K+L LS N F L S + L LY+ N
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--- 332
Query: 154 GPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213
+L + + LG+L++ LD S N+I + L ++N
Sbjct: 333 VKKLHLGVGCLEK----LGNLQT---LDLSHNDIEA-------SDCCSLQLKN------- 371
Query: 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSK-- 271
+ LQ L+LS N+ G + P L+ L L+ FT L + A
Sbjct: 372 ------LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA---FTRLHINAPQSPFQNLH 422
Query: 272 -LVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
L L L+Y L LA +P L L+L+ N F
Sbjct: 423 FLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 28/237 (11%)
Query: 94 LPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN--- 150
L LD++ S +P L L K+L LS N F+ L S + L L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 151 ---------DFQGPR-LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPT--- 197
+ + R L++ + I + L++LS L + N++ P + T
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL--NLSYNEPLSLKTEAF 396
Query: 198 ------SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251
L++L+ V + F ++ L+VL+LS + L + + P+LQ L
Sbjct: 397 KECPQLELLDLAFTRLK-VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455
Query: 252 LSYNNFT--SLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306
L N+F ++Q ++ +L L LS+ +L S+ ++ + L HN+
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 120 RLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSF 179
RL L N + L H L+QL +L L +N L + S+F SL +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-----LSFKGCCSQSDF----GTTSLKY 82
Query: 180 LDASDNNITGKIPPTFPTSLVE-LSVRNNNLVGNVPE--NFGDMEFLQVLDLSRNKLSGT 236
LD S N + +E L +++NL + E F + L LD+S
Sbjct: 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 237 IFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNL 296
+ SL+ L ++ N+F +P L L+LS +L P S+ +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 297 SALSLEHNKFIGM 309
L++ HN F +
Sbjct: 202 QVLNMSHNNFFSL 214
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 94 LPTLDISDNSFSGS-VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152
L L ++ NSF + +PD ++L L LS + L + SLS L+ L + +N+F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNI-TGKIPPT--FPTSLVELSVRNNNL 209
FPY L SL LD S N+I T K FP+SL L++ N+
Sbjct: 212 FSL----------DTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Query: 210 V 210
Sbjct: 261 A 261
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 42/205 (20%)
Query: 107 SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISS 166
S+P L++ V K L LS N + ++ + L+ L L +N I ++S SS
Sbjct: 45 SIPSGLTEAV--KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSS 98
Query: 167 EFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQ 224
L SL LD S N ++ F +SL L NL+GN + G+
Sbjct: 99 -------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL-----NLLGNPYKTLGE----- 141
Query: 225 VLDLSRNKLSGTIFSVLFDH-PSLQQLTL-SYNNFTSLQVPANMGLTSKLVALELSYNEL 282
+ LF H LQ L + + + FT +Q GLT L LE+ ++L
Sbjct: 142 --------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDL 186
Query: 283 GGFLPAYLASMPNLSALSLEHNKFI 307
+ P L S+ N+S L L + I
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHI 211
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 172 GSLKSLSFLDASDN--NITGK----IPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQV 225
GSL + S+N + GK IP P ++ E+ + N + P F + L+
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 226 LDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSL 260
+DLS N++S SL L L N T L
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249
+IP P ++ E+ + N + P F + L+ +DLS N++S SL
Sbjct: 25 EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84
Query: 250 LTLSYNNFTSL 260
L L N T L
Sbjct: 85 LVLYGNKITEL 95
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 42/209 (20%)
Query: 106 GSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSIS 165
S+P L++ V K L LS N + ++ + L+ L L +N I ++S S
Sbjct: 18 NSIPSGLTEAV--KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFS 71
Query: 166 SEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFL 223
S L SL LD S N ++ F +SL L NL+GN + G+
Sbjct: 72 S-------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL-----NLLGNPYKTLGE---- 115
Query: 224 QVLDLSRNKLSGTIFSVLFDH-PSLQQLTL-SYNNFTSLQVPANMGLTSKLVALELSYNE 281
+ LF H LQ L + + + FT +Q GLT L LE+ ++
Sbjct: 116 ---------------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASD 159
Query: 282 LGGFLPAYLASMPNLSALSLEHNKFIGMI 310
L + P L S+ N+S L L + I ++
Sbjct: 160 LQSYEPKSLKSIQNVSHLILHMKQHILLL 188
>pdb|3H35|A Chain A, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2.
pdb|3H35|B Chain B, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2.
pdb|3H35|C Chain C, Structure Of The Uncharacterized Protein Abo_0056 From The
Hydrocarbon-Degrading Marine Bacterium Alcanivorax
Borkumensis Sk2
Length = 185
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 75 LDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHA 134
L+ + +PG L S NL L + I SVP + + LV R L+G+ + L
Sbjct: 11 LEALHHPGELEGSPQNLHQLLGVSIEQ-----SVPQAQTXLVERHLASLTGDEARLLAAL 65
Query: 135 SVGSLSQLEELY 146
S GS L LY
Sbjct: 66 SDGSAFALLTLY 77
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 86/221 (38%), Gaps = 57/221 (25%)
Query: 139 LSQLEELYLDNNDFQG----PRLE----------IRQNSISSEFPYLGSL--------KS 176
+S L+EL L+N + G P LE +R S ++ +L L K
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 177 LSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGN-------VPENFGDMEFLQVLDLS 229
LS A N + + FP +L L + +N +G P F ++ L + +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 230 RNKLSGTIFSVLFDHPSLQQLTLSYN----------------------NFTSL-QVPANM 266
SG ++ LQ L LS+N +FT L QVP
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-- 270
Query: 267 GLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFI 307
GL +KL L+LSYN L +P + LSL+ N F+
Sbjct: 271 GLPAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFL 309
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 198 SLVELSVRNNNLVGNVPEN-FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256
+L L +R N + +P + F D+E L+ ++ NKL + P L+QL L+ N
Sbjct: 148 NLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 257 FTSLQVPANMGLTSKLVALE 276
S VP G+ +L +L+
Sbjct: 206 LKS--VPD--GIFDRLTSLQ 221
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 206 NNNLVGNVPENFGD-MEFLQVLDLSRNKLSGTIF---SVLFDHPSLQQLTLSYNNFTSLQ 261
N+ V VP +F ++ L+ LDLS N + + PSLQ L LS N+ S+Q
Sbjct: 344 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 403
Query: 262 VPANMGLTSK-LVALELSYN 280
+ LT K L +L++S N
Sbjct: 404 KTGEILLTLKNLTSLDISRN 423
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248
+P PT L + NN + P F + LQ L + NKL+ V L
Sbjct: 25 ASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84
Query: 249 QLTLSYNNFTSL 260
QL L+ N+ S+
Sbjct: 85 QLDLNDNHLKSI 96
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 207 NNLVGNVPENFGD-MEFLQVLDLSRNKLSGTIF---SVLFDHPSLQQLTLSYNNFTSLQV 262
N+ V VP +F ++ L+ LDLS N + + PSLQ L LS N+ S+Q
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378
Query: 263 PANMGLTSK-LVALELSYN 280
+ LT K L +L++S N
Sbjct: 379 TGEILLTLKNLTSLDISRN 397
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 46/229 (20%)
Query: 130 CLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITG 189
I ++ L++L+ +Y N+ F + + +S++ + LS+ + D
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD----- 492
Query: 190 KIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNK------LSGTIFSVLFD 243
L ++ + N +P+ D+ LQ L+++ N+ L + D
Sbjct: 493 ---------LTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
Query: 244 H---PSLQQLTLSYNNF------TSLQVPANMGLTS----------------KLVALELS 278
P +Q YNN SLQ +GL KL L+L
Sbjct: 544 EDTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD 603
Query: 279 YNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLF 327
YN++ + A + L HNK + IP F K + G+ F
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVXGSVDF 651
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 119 KRLGLSGNSFKCLIHASVGSLSQLEELYLDNND-FQGPRLE----IRQNSISSEFPYLGS 173
K L LSGN + A + ++LE L L +N ++ LE +R ++ Y+
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR--TLDLNNNYVQE 94
Query: 174 L---KSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSR 230
L S+ L A++NNI+ ++ + + + NN + + G +Q LDL
Sbjct: 95 LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 231 NKLSGTIFSVL-FDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAY 289
N++ F+ L +L+ L L YN ++ + +KL L+LS N+L F+
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKL-AFMGPE 209
Query: 290 LASMPNLSALSLEHNKFI 307
S ++ +SL +NK +
Sbjct: 210 FQSAAGVTWISLRNNKLV 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,536,973
Number of Sequences: 62578
Number of extensions: 421804
Number of successful extensions: 1548
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 310
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)