Query 045704
Match_columns 362
No_of_seqs 296 out of 3809
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-37 4.3E-42 321.9 27.5 321 25-360 37-402 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.9E-33 1.1E-37 289.0 22.1 245 66-313 116-375 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.6E-30 1.4E-34 233.6 3.8 241 67-309 77-356 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.7E-29 1.4E-33 227.1 4.7 245 69-314 53-337 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.5E-27 3.2E-32 220.0 -2.9 285 68-361 7-338 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-27 3E-32 220.3 -4.6 287 67-361 54-361 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2.4E-25 5.2E-30 195.7 -4.5 185 67-258 67-310 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 5.3E-21 1.2E-25 188.1 19.2 250 68-352 201-458 (788)
9 KOG0472 Leucine-rich repeat pr 99.9 9.4E-24 2E-28 185.8 -4.1 256 89-356 249-544 (565)
10 PLN03210 Resistant to P. syrin 99.8 1.6E-19 3.4E-24 189.4 22.6 271 69-360 612-891 (1153)
11 PRK15370 E3 ubiquitin-protein 99.8 8.9E-20 1.9E-24 180.3 16.5 245 68-352 178-428 (754)
12 KOG0618 Serine/threonine phosp 99.8 3.3E-21 7.1E-26 185.4 1.7 282 70-361 47-429 (1081)
13 PLN03210 Resistant to P. syrin 99.8 1.5E-18 3.2E-23 182.1 20.6 256 94-361 591-868 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 4.8E-19 1E-23 174.4 15.2 236 92-361 201-444 (788)
15 KOG4237 Extracellular matrix p 99.8 1.7E-21 3.6E-26 171.3 -5.0 247 66-326 65-358 (498)
16 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 171.4 12.2 228 92-359 178-408 (754)
17 KOG0618 Serine/threonine phosp 99.7 6.5E-20 1.4E-24 176.5 -2.1 239 92-350 241-487 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-19 5.9E-24 163.2 0.9 154 198-351 138-319 (319)
19 KOG4237 Extracellular matrix p 99.7 8.6E-20 1.9E-24 160.6 -3.3 196 63-258 86-359 (498)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-19 7.6E-24 162.5 0.1 252 67-325 22-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-18 4.3E-23 135.9 -3.9 161 88-267 29-193 (264)
22 KOG0617 Ras suppressor protein 99.6 2.4E-17 5.2E-22 129.8 -4.1 158 138-312 31-191 (264)
23 KOG0532 Leucine-rich repeat (L 99.3 6E-14 1.3E-18 129.4 -2.7 188 93-325 76-271 (722)
24 PLN03150 hypothetical protein; 99.3 1E-11 2.2E-16 122.5 12.1 120 56-187 405-527 (623)
25 KOG1909 Ran GTPase-activating 99.3 8.7E-13 1.9E-17 115.2 1.4 235 67-307 29-311 (382)
26 KOG3207 Beta-tubulin folding c 99.3 6.5E-13 1.4E-17 119.1 0.0 211 89-310 118-342 (505)
27 COG4886 Leucine-rich repeat (L 99.2 2.1E-11 4.6E-16 114.6 6.9 198 96-314 97-297 (394)
28 KOG1909 Ran GTPase-activating 99.2 2.6E-12 5.6E-17 112.3 0.3 244 84-352 22-311 (382)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.2E-16 99.9 5.0 130 171-302 15-148 (175)
30 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.3E-17 121.3 -3.1 170 180-358 80-253 (722)
31 COG4886 Leucine-rich repeat (L 99.1 6.8E-11 1.5E-15 111.2 6.9 196 73-290 98-297 (394)
32 KOG3207 Beta-tubulin folding c 99.1 5.9E-12 1.3E-16 113.0 -1.8 188 113-309 118-316 (505)
33 PLN03150 hypothetical protein; 99.1 5.4E-10 1.2E-14 110.4 9.1 106 222-328 419-529 (623)
34 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 94.2 4.4 57 197-253 88-148 (175)
35 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.7E-15 100.0 0.7 132 219-356 282-416 (490)
36 PF13855 LRR_8: Leucine rich r 98.9 4.3E-10 9.3E-15 75.8 2.6 61 92-152 1-61 (61)
37 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 99.5 0.1 132 173-311 282-416 (490)
38 KOG2120 SCF ubiquitin ligase, 98.8 9.1E-11 2E-15 100.7 -4.8 197 92-298 185-391 (419)
39 PF13855 LRR_8: Leucine rich r 98.8 5.1E-09 1.1E-13 70.5 3.8 60 198-257 2-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 104.9 -1.9 60 92-153 72-131 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 8E-09 1.7E-13 104.8 3.8 107 67-186 544-653 (889)
42 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.7E-14 101.5 -0.4 126 68-210 72-199 (414)
43 KOG2982 Uncharacterized conser 98.6 1.1E-08 2.4E-13 88.1 -0.4 207 90-308 69-291 (418)
44 KOG4658 Apoptotic ATPase [Sign 98.5 9.3E-08 2E-12 97.1 5.9 148 68-229 523-676 (889)
45 KOG1859 Leucine-rich repeat pr 98.5 2.3E-09 5E-14 102.3 -6.8 103 198-307 165-267 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.5 2.9E-08 6.2E-13 84.5 0.0 234 67-307 29-316 (388)
47 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.3E-12 81.2 0.2 187 66-259 69-263 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 4.2E-08 9E-13 83.6 -3.7 183 171-354 88-318 (388)
49 KOG1859 Leucine-rich repeat pr 98.2 5.2E-08 1.1E-12 93.3 -4.8 175 171-355 105-295 (1096)
50 KOG1644 U2-associated snRNP A' 98.2 3.2E-06 6.8E-11 69.2 5.2 106 197-304 42-150 (233)
51 KOG2120 SCF ubiquitin ligase, 98.1 5.3E-08 1.2E-12 84.0 -6.0 178 68-256 185-374 (419)
52 PF12799 LRR_4: Leucine Rich r 98.0 5.4E-06 1.2E-10 51.3 3.4 37 93-130 2-38 (44)
53 KOG4579 Leucine-rich repeat (L 97.9 5.8E-07 1.3E-11 69.0 -3.1 83 222-307 54-136 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 49.5 3.4 37 271-308 2-38 (44)
55 PRK15386 type III secretion pr 97.8 9E-05 2E-09 68.4 9.2 14 92-105 52-65 (426)
56 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.6E-10 62.9 5.8 85 92-188 42-126 (233)
57 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.2E-10 62.2 -0.6 84 90-188 51-136 (177)
58 KOG3665 ZYG-1-like serine/thre 97.5 2.1E-05 4.6E-10 78.3 0.5 81 174-256 147-231 (699)
59 PRK15386 type III secretion pr 97.5 0.00051 1.1E-08 63.5 8.4 137 111-281 47-188 (426)
60 KOG3665 ZYG-1-like serine/thre 97.3 6.7E-05 1.5E-09 74.7 0.6 82 68-151 148-231 (699)
61 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4E-09 61.4 1.4 83 218-300 62-149 (260)
62 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.6E-09 37.2 0.4 22 340-361 1-22 (22)
63 PF13306 LRR_5: Leucine rich r 96.9 0.0026 5.7E-08 49.3 6.0 59 88-148 8-66 (129)
64 PF13306 LRR_5: Leucine rich r 96.9 0.0031 6.7E-08 48.9 6.1 39 110-149 6-44 (129)
65 KOG2123 Uncharacterized conser 96.7 6.1E-05 1.3E-09 64.9 -4.9 99 198-300 20-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 56.5 2.7 39 114-152 63-103 (260)
67 PF13504 LRR_7: Leucine rich r 96.4 0.0022 4.8E-08 30.6 1.4 17 339-355 1-17 (17)
68 KOG2123 Uncharacterized conser 96.1 0.00045 9.8E-09 59.7 -3.1 92 220-316 18-110 (388)
69 PF08263 LRRNT_2: Leucine rich 96.1 0.009 1.9E-07 36.6 3.5 29 26-61 12-43 (43)
70 KOG4341 F-box protein containi 95.6 0.00098 2.1E-08 60.7 -3.3 134 174-307 293-439 (483)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.01 2.2E-07 30.4 0.6 12 118-129 2-13 (22)
72 smart00369 LRR_TYP Leucine-ric 94.6 0.024 5.3E-07 30.3 1.6 22 339-360 2-23 (26)
73 smart00370 LRR Leucine-rich re 94.6 0.024 5.3E-07 30.3 1.6 22 339-360 2-23 (26)
74 smart00364 LRR_BAC Leucine-ric 93.8 0.038 8.2E-07 29.4 1.3 19 339-357 2-20 (26)
75 KOG4308 LRR-containing protein 93.0 0.00074 1.6E-08 64.5 -10.6 182 141-329 88-305 (478)
76 KOG4308 LRR-containing protein 92.8 0.00094 2E-08 63.8 -10.2 186 70-259 89-304 (478)
77 KOG1947 Leucine rich repeat pr 92.7 0.015 3.2E-07 56.0 -2.4 60 174-233 242-307 (482)
78 KOG3864 Uncharacterized conser 92.5 0.023 4.9E-07 47.1 -1.2 83 222-304 102-186 (221)
79 smart00370 LRR Leucine-rich re 91.7 0.2 4.3E-06 26.6 2.4 21 116-136 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 91.7 0.2 4.3E-06 26.6 2.4 21 116-136 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 91.7 0.0038 8.2E-08 52.7 -6.6 85 66-153 40-124 (326)
82 KOG3864 Uncharacterized conser 88.8 0.092 2E-06 43.6 -0.8 82 67-148 100-184 (221)
83 PF13516 LRR_6: Leucine Rich r 87.2 0.18 3.9E-06 26.2 0.0 16 294-309 2-17 (24)
84 KOG1947 Leucine rich repeat pr 87.2 0.19 4.2E-06 48.3 0.2 131 173-303 186-330 (482)
85 smart00368 LRR_RI Leucine rich 75.6 1.9 4.2E-05 23.3 1.4 14 339-352 2-15 (28)
86 KOG0473 Leucine-rich repeat pr 75.3 0.043 9.3E-07 46.6 -7.8 85 218-306 39-123 (326)
87 smart00365 LRR_SD22 Leucine-ri 74.3 3 6.5E-05 22.3 1.8 12 117-128 3-14 (26)
88 KOG4242 Predicted myosin-I-bin 74.2 13 0.00027 35.4 7.0 110 197-307 354-481 (553)
89 KOG4341 F-box protein containi 70.7 1.4 3E-05 40.9 0.0 176 115-301 267-459 (483)
90 KOG3763 mRNA export factor TAP 59.3 5.8 0.00013 38.3 1.8 63 90-154 216-284 (585)
91 KOG4242 Predicted myosin-I-bin 52.0 22 0.00048 33.9 4.2 174 175-351 165-366 (553)
92 KOG3763 mRNA export factor TAP 48.1 9.1 0.0002 37.0 1.2 64 219-284 216-284 (585)
93 smart00367 LRR_CC Leucine-rich 44.1 18 0.00038 18.9 1.5 12 116-127 2-13 (26)
94 TIGR00864 PCC polycystin catio 33.3 31 0.00067 40.3 2.5 32 277-308 2-33 (2740)
95 TIGR00864 PCC polycystin catio 32.7 33 0.00072 40.0 2.7 34 98-131 1-34 (2740)
96 PF05725 FNIP: FNIP Repeat; I 30.8 80 0.0017 18.9 3.1 29 176-204 13-41 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-37 Score=321.87 Aligned_cols=321 Identities=33% Similarity=0.463 Sum_probs=194.9
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcC
Q 045704 25 FFGTTVAPGSCLSLWDFSVDPGDHLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSF 104 (362)
Q Consensus 25 ~~~~~~~~~~~l~~w~~~~~~c~~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i 104 (362)
|+....++...+.+|+...++|.| .|++|+. .++|+.|+++++.+++.++..+..+++|+.|++++|.+
T Consensus 37 ~~~~~~~~~~~~~~w~~~~~~c~w-------~gv~c~~----~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 37 FKSSINDPLKYLSNWNSSADVCLW-------QGITCNN----SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred HHHhCCCCcccCCCCCCCCCCCcC-------cceecCC----CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 455555677778999877899999 8999986 47899999999999999999999999999999999999
Q ss_pred CCCCchhhc-CCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC------------eeEeecCCCCCCCCC-
Q 045704 105 SGSVPDSLS-KLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP------------RLEIRQNSISSEFPY- 170 (362)
Q Consensus 105 ~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~l~l~~n~~~~~~~~- 170 (362)
.+.+|..+. ++++|++|++++|++++.+|. +.+++|++|++++|.+.+. .+++++|.+.+..|.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 888887654 788888888888877665543 3455566666666555422 445555555554444
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
+.++++|++|++++|.+.+..|..+. ++|++|++++|++.+.+|..+.++++|++|++++|.+.+..|..+..+++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 55555555555555555555554444 4555555555555555555555555555555555555555555555555555
Q ss_pred EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCc------------------------CCCCChhhhcCCCCCCeEeccCC
Q 045704 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNE------------------------LGGFLPAYLASMPNLSALSLEHN 304 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~L~~n 304 (362)
+|++++|.+.+ .+|..+..+++|++|++++|. +.+..|..+..+++|+.|++++|
T Consensus 264 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 264 YLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred EEECcCCeeec-cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 55555555443 234444444444444444444 44444444444445555555555
Q ss_pred cCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCC-CCCCcccC
Q 045704 305 KFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY-MCPEMFFF 360 (362)
Q Consensus 305 ~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~-~~P~~~~~ 360 (362)
.+.+.+|..+... .|++++|++++.+|..++.. ++|+.|++++|++. .+|..+..
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhC
Confidence 5544444443322 45555555555555555555 35555555555553 44444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-33 Score=289.05 Aligned_cols=245 Identities=34% Similarity=0.506 Sum_probs=134.4
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
...+++.|++++|.+++.+|. +.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+.++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 345666777776666655553 345566666666666655556556666666666666666655555556666666666
Q ss_pred EccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC
Q 045704 146 YLDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV 210 (362)
Q Consensus 146 ~L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~ 210 (362)
++++|.+.+. .++++.|.+.+..|. +.++++|++|++++|.+.+..|..+. ++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 6665554432 445555555555544 55555666666665555555555444 55555555555555
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhh
Q 045704 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL 290 (362)
Q Consensus 211 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 290 (362)
+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 5555555555555555555555555555555555555555555555544 234444444555555555555544444444
Q ss_pred cCCCCCCeEeccCCcCccCCChh
Q 045704 291 ASMPNLSALSLEHNKFIGMIPTQ 313 (362)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~~~~~~ 313 (362)
..+++|+.|++++|++.+.+|..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChh
Confidence 44445555555554444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.6e-30 Score=233.60 Aligned_cols=241 Identities=23% Similarity=0.294 Sum_probs=161.3
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCC-----
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQ----- 141 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~----- 141 (362)
+...+.|++++|.+...-+..|-++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+.+-.+.+..++.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345677888888877666666677777777777777666 55554444444555555555555544444444444
Q ss_pred -------------------CcEEEccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCC
Q 045704 142 -------------------LEELYLDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITG 189 (362)
Q Consensus 142 -------------------L~~L~L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~ 189 (362)
+++|+|++|.|+.. .+.++.|+++..++. |+++++|+.|++..|.+..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 45555555544433 566777777766665 7777777777777777764
Q ss_pred CCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcC
Q 045704 190 KIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMG 267 (362)
Q Consensus 190 ~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~ 267 (362)
.-...|. ++++.|.+..|++...-..+|..+.++++|+++.|+++..-.+++.+++.|+.|++++|.|..++ ++.+.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-IDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee-cchhh
Confidence 3333444 66777777777777666667777888888888888887777777778888888888888887755 44566
Q ss_pred CCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccC
Q 045704 268 LTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 268 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
..++|+.|+|++|+|+...+..|..+..|+.|+|+.|.+...
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 777888888888888777666666666666666666655543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=6.7e-29 Score=227.08 Aligned_cols=245 Identities=22% Similarity=0.204 Sum_probs=173.1
Q ss_pred eEEEEEecCCCCcccccccccC-C-CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 69 RVTEITLDPVGYPGSLISSKWN-L-LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 69 ~l~~L~l~~~~l~~~~~~~~~~-l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
+...++.+.++++..--..+.. + +.-+.|++++|.+....+..|.++++|+++++..|.++.+ |.......+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-ccccccccceeEEe
Confidence 4456666776665322222222 1 3567899999999988999999999999999999999876 66555556699999
Q ss_pred ccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCC
Q 045704 147 LDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVG 211 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~ 211 (362)
|.+|.|+.. .++++.|.++.+... +..-.++++|++++|.++......|. .+|..|.+++|+++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 999999876 688999988876544 88888999999999999876666666 788899999999986
Q ss_pred CCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCC-----------------------CCCcCC
Q 045704 212 NVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQV-----------------------PANMGL 268 (362)
Q Consensus 212 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l-----------------------~~~~~~ 268 (362)
..+..|..+++|+.|++..|.+.-.---.|.++++|+.|.|..|++..+.. ..++..
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 556667778888888888887764434455666666666666665554321 223344
Q ss_pred CCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhh
Q 045704 269 TSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314 (362)
Q Consensus 269 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 314 (362)
+++|+.|++++|.|..+.++.+...++|++|+|++|+++...+..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 4555566666666555555555555666666666666665555444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.5e-27 Score=220.03 Aligned_cols=285 Identities=24% Similarity=0.326 Sum_probs=130.1
Q ss_pred CeEEEEEecCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 68 ARVTEITLDPVGYP-GSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 68 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
+-|+.+++++|.++ +..|..+..++.++.|.|.+.++. .+|+.++.+.+|++|.+++|++..+ -..++.++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 44555666666665 345555555566666666555555 4555555555555555555555433 22344444444444
Q ss_pred ccCCcccCC-------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc---cCCcEEEeeCCccC
Q 045704 147 LDNNDFQGP-------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP---TSLVELSVRNNNLV 210 (362)
Q Consensus 147 L~~n~l~~~-------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---~~L~~L~l~~n~l~ 210 (362)
+..|++... .++++.|+++..+..+..-+++-.|++++|++. .+|..+. +.|-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 444443211 122222222222222333333334444444433 2333322 33333444444443
Q ss_pred CCCcccccCCCCCCEEEccCCcCCC-------------------------cchhhhcCCCCCcEEEccCCCCCCCCCCCC
Q 045704 211 GNVPENFGDMEFLQVLDLSRNKLSG-------------------------TIFSVLFDHPSLQQLTLSYNNFTSLQVPAN 265 (362)
Q Consensus 211 ~~~~~~l~~l~~L~~L~ls~n~l~~-------------------------~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~ 265 (362)
.+|.-+..+.+|++|++++|.+.. .+|..+.++.+|+.+|++.|.+.. +|..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHH
Confidence 333333344444444444443322 233344444444444555544442 2444
Q ss_pred cCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeeccccccc-ccCChhhhcCCCC
Q 045704 266 MGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLF-GPISGHLMGMKPG 340 (362)
Q Consensus 266 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~-~~~~~~~~~~~~~ 340 (362)
+..+++|+.|+|++|+|+. .......+.+|+.|+++.|+++. .|...+.. .|++.+|+++ +.||+.++.+ ..
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-~~ 317 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-IQ 317 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh-hh
Confidence 4444455555555555443 22223334445555555555442 23333322 4555555543 2355666665 36
Q ss_pred CcEEEecCCCCCCCCCcccCC
Q 045704 341 FANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 341 L~~L~L~~N~l~~~P~~~~~~ 361 (362)
|+++..++|.+.-+|+++.+|
T Consensus 318 Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred hHHHHhhccccccCchhhhhh
Confidence 666666666666666666555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-27 Score=220.26 Aligned_cols=287 Identities=24% Similarity=0.284 Sum_probs=222.1
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCC-CCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSG-SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
..+++.|.+.+|.+. .+...+..+|.|+.+.+.+|+++. -+|..+..+..|..|||++|++... |..+.+.+++-.|
T Consensus 54 lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEE
Confidence 345566666666664 334455666667777777666652 2566666666777777777766654 5666666666677
Q ss_pred EccCCcccCC------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC-
Q 045704 146 YLDNNDFQGP------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV- 210 (362)
Q Consensus 146 ~L~~n~l~~~------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~- 210 (362)
+|++|+|..+ .++++.|.+...+|.+..+..|+.|++++|.+.-.....++ ++|+.|.+++.+-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 7777666554 46666777777888888999999999999988654444454 78889999887654
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhh
Q 045704 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL 290 (362)
Q Consensus 211 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 290 (362)
..+|..+..+.+|..+|+|.|.+. ..|+.+..+++|+.|+|++|.|+.+ ....+...+|++|++++|+++. .|+++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL--~~~~~~W~~lEtLNlSrNQLt~-LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL--NMTEGEWENLETLNLSRNQLTV-LPDAV 287 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee--eccHHHHhhhhhhccccchhcc-chHHH
Confidence 468899999999999999999998 7888899999999999999999964 5566677899999999999996 88999
Q ss_pred cCCCCCCeEeccCCcCcc-CCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 291 ASMPNLSALSLEHNKFIG-MIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~-~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
+.+++|+.|.+.+|+++- -+|+.+... .+..++|++ ..+|..++.+ +.|+.|.|+.|.+..+|+.+-.+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC-~kL~kL~L~~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRC-VKLQKLKLDHNRLITLPEAIHLL 361 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhh-HHHHHhcccccceeechhhhhhc
Confidence 999999999999999873 356655544 677777777 6899999999 79999999999999999887544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2.4e-25 Score=195.73 Aligned_cols=185 Identities=30% Similarity=0.393 Sum_probs=117.6
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
...++.+.++++.+. .+|++++.+..++.++.++|+++ ++|+.+..+.+++++++++|.+... ++.++.+..|+.++
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeec-CchHHHHhhhhhhh
Confidence 445667777777765 45666776667777777777776 5666666666777777766666654 34455555566666
Q ss_pred ccCCcccCC----------------------------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCC
Q 045704 147 LDNNDFQGP----------------------------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIP 192 (362)
Q Consensus 147 L~~n~l~~~----------------------------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 192 (362)
..+|+++.. +++...|-+...+|.++.+.+|+.|++..|.+. ..|
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC
Confidence 555555543 445555555555555666666666666666654 233
Q ss_pred ----------------------CCcc---cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 045704 193 ----------------------PTFP---TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247 (362)
Q Consensus 193 ----------------------~~l~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L 247 (362)
.... +++..||+++|++. +.|+.+..+.+|++||+++|.++ ..|..++++ +|
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence 2222 45677778888777 77777777788888888888777 344456666 66
Q ss_pred cEEEccCCCCC
Q 045704 248 QQLTLSYNNFT 258 (362)
Q Consensus 248 ~~L~L~~n~l~ 258 (362)
+.|.+.+|.+.
T Consensus 300 ~~L~leGNPlr 310 (565)
T KOG0472|consen 300 KFLALEGNPLR 310 (565)
T ss_pred eehhhcCCchH
Confidence 76666666543
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=5.3e-21 Score=188.06 Aligned_cols=250 Identities=28% Similarity=0.284 Sum_probs=192.6
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
.+-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++.+ |.. .++|++|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence 44456888888887 5777665 47899999999998 4564 357899999999999876 432 367889999
Q ss_pred cCCcccCC--------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccC
Q 045704 148 DNNDFQGP--------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGD 219 (362)
Q Consensus 148 ~~n~l~~~--------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~ 219 (362)
++|.+... .++++.|.++..+. ..++|++|++++|.+++ +|. +...|+.|++++|++. .+|..
T Consensus 270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~-~LP~l--- 340 (788)
T PRK15387 270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLT-SLPTL--- 340 (788)
T ss_pred cCCchhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCC-CcccccccccccCccc-ccccc---
Confidence 99887653 56777888775433 24689999999999884 454 4467899999999987 45532
Q ss_pred CCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeE
Q 045704 220 MEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSAL 299 (362)
Q Consensus 220 l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 299 (362)
..+|++|++++|.+++. |.. .++|+.|++++|.+..+ |.. ..+|+.|++++|.+.+ +|.. .++|+.|
T Consensus 341 p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L--P~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~L 407 (788)
T PRK15387 341 PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL--PAL---PSGLKELIVSGNRLTS-LPVL---PSELKEL 407 (788)
T ss_pred ccccceEecCCCccCCC-CCC---CcccceehhhccccccC--ccc---ccccceEEecCCcccC-CCCc---ccCCCEE
Confidence 25799999999999854 332 36788999999999854 543 3579999999999997 4432 3689999
Q ss_pred eccCCcCccCCChhhhhceeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 300 SLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 300 ~L~~n~l~~~~~~~~~~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
++++|++++.+........|++++|+++ .+|..+..+ ++|+.|+|++|+|+
T Consensus 408 dLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L-~~L~~LdLs~N~Ls 458 (788)
T PRK15387 408 MVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLS 458 (788)
T ss_pred EccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhc-cCCCeEECCCCCCC
Confidence 9999999975432222338999999997 689999999 79999999999997
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=9.4e-24 Score=185.76 Aligned_cols=256 Identities=29% Similarity=0.376 Sum_probs=187.1
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC-------------
Q 045704 89 WNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP------------- 155 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------- 155 (362)
++++++..||+++|+++ +.|+.+..+++|++||+++|.+++. |..++++ .|+.|.+.+|++...
T Consensus 249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence 36777888888888887 6788888888888888888888876 5567777 788888888876543
Q ss_pred -ee-------EeecC---------CCCCCCCCCCCCCCCCEEeCcccccCCCCCCC-cc----cCCcEEEeeCCccCCCC
Q 045704 156 -RL-------EIRQN---------SISSEFPYLGSLKSLSFLDASDNNITGKIPPT-FP----TSLVELSVRNNNLVGNV 213 (362)
Q Consensus 156 -~l-------~l~~n---------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~----~~L~~L~l~~n~l~~~~ 213 (362)
++ .++.. ...+..|..-.+.+.+.|++++-+++. +|.. |. .-+..++++.|++. ++
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-el 403 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-EL 403 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hh
Confidence 00 00000 011112223334567778888877774 4443 33 33678888888887 67
Q ss_pred cccccCCCCCCE-EEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcC
Q 045704 214 PENFGDMEFLQV-LDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLAS 292 (362)
Q Consensus 214 ~~~l~~l~~L~~-L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 292 (362)
|..+..++.+.+ +.+++|.+ +.+|..+..+++|..|++++|-+.+ +|..++.+..|+.++++.|.+.. .|..+..
T Consensus 404 Pk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~ 479 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRM-LPECLYE 479 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccccccccc-chHHHhh
Confidence 776666654443 44455544 4778888899999999999999884 58888888889999999998886 7888887
Q ss_pred CCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 293 MPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 293 l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
+..++.+-.++|++....++.+... .||+.+|.+ ..+|..++++ .+|++|++.+|+|. .|.
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~Lgnm-tnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNM-TNLRHLELDGNPFR-QPR 544 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccc-cceeEEEecCCccC-CCH
Confidence 7788888888899988877755443 899999998 5799999999 59999999999998 554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.6e-19 Score=189.41 Aligned_cols=271 Identities=20% Similarity=0.166 Sum_probs=145.8
Q ss_pred eEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEcc
Q 045704 69 RVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLD 148 (362)
Q Consensus 69 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 148 (362)
+++.|++.++.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+.++++|++|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3444444444433 2333344444444444444332223332 4444444444444444333344444444444444444
Q ss_pred CCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEc
Q 045704 149 NNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDL 228 (362)
Q Consensus 149 ~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 228 (362)
+|. ..+.+|...++++|+.|++++|.....+|. ...+|+.|++++|.+. .+|..+ .+++|++|.+
T Consensus 690 ~c~------------~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~-~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 690 RCE------------NLEILPTGINLKSLYRLNLSGCSRLKSFPD-ISTNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCC------------CcCccCCcCCCCCCCEEeCCCCCCcccccc-ccCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 332 222333322566777777777654434442 2356777777777665 444433 3555666655
Q ss_pred cCCcCC-------CcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 229 SRNKLS-------GTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 229 s~n~l~-------~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
.++... ...+......++|+.|++++|.... .+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 543211 1111112234567777777775444 457777777777788877765444455443 5677777777
Q ss_pred cCCcCccCCChhhhhc-eeecccccccccCChhhhcCCCCCcEEEecC-CCCCCCCCcccC
Q 045704 302 EHNKFIGMIPTQFALK-RLLWGGNYLFGPISGHLMGMKPGFANVSLVD-NCLYMCPEMFFF 360 (362)
Q Consensus 302 ~~n~l~~~~~~~~~~~-~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~-N~l~~~P~~~~~ 360 (362)
++|.....+|...... .|++++|.++ .+|.++..+ ++|++|++++ |+++.+|..+..
T Consensus 833 s~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l-~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 833 SGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKF-SNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred CCCCccccccccccccCEeECCCCCCc-cChHHHhcC-CCCCEEECCCCCCcCccCccccc
Confidence 7775555555433222 7777777775 577777777 5788888777 566677665443
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=8.9e-20 Score=180.33 Aligned_cols=245 Identities=25% Similarity=0.350 Sum_probs=186.1
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
.+.+.|++++++++ .+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++.+ |..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEEC
Confidence 56788999998887 3565443 57999999999999 5676554 5899999999999865 55443 47999999
Q ss_pred cCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEE
Q 045704 148 DNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVL 226 (362)
Q Consensus 148 ~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 226 (362)
++|.+.. +|. +. .+|+.|++++|.++ .+|..+..+|+.|++++|++. .+|..+. ++|+.|
T Consensus 249 s~N~L~~-------------LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L 309 (754)
T PRK15370 249 SINRITE-------------LPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHL 309 (754)
T ss_pred cCCccCc-------------CChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCccc-cCcccch--hhHHHH
Confidence 9887652 232 32 47999999999998 577777789999999999998 4555443 478999
Q ss_pred EccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcC
Q 045704 227 DLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 227 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 306 (362)
++++|.++.. |..+ .++|+.|++++|.++.+ |..+ .++|+.|++++|++.. +|..+. ++|+.|++++|++
T Consensus 310 ~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 310 NVQSNSLTAL-PETL--PPGLKTLEAGENALTSL--PASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred HhcCCccccC-Cccc--cccceeccccCCccccC--Chhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcC
Confidence 9999999854 3333 36899999999999864 5544 3689999999999986 555543 6899999999999
Q ss_pred ccCCChhhh-hceeecccccccccCChhh----hcCCCCCcEEEecCCCCC
Q 045704 307 IGMIPTQFA-LKRLLWGGNYLFGPISGHL----MGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 307 ~~~~~~~~~-~~~L~l~~N~l~~~~~~~~----~~~~~~L~~L~L~~N~l~ 352 (362)
+..++.... ...|++++|+++ .+|..+ ... +.+..|++.+|+|+
T Consensus 380 t~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~-~~l~~L~L~~Npls 428 (754)
T PRK15370 380 TNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEG-PQPTRIIVEYNPFS 428 (754)
T ss_pred CCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcC-CCccEEEeeCCCcc
Confidence 965443322 228999999997 455443 344 68899999999985
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=3.3e-21 Score=185.36 Aligned_cols=282 Identities=27% Similarity=0.297 Sum_probs=170.5
Q ss_pred EEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccC
Q 045704 70 VTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149 (362)
Q Consensus 70 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 149 (362)
++.|++++|.+. ..|..+..+.+|+.|.+++|.|. ..|.+..++++|+++.|.+|.+... |..+..+++|++|+++.
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcC-chhHHhhhcccccccch
Confidence 677777777664 45666666667777777777776 5566666677777777776665543 66666677777777776
Q ss_pred CcccCC----------------------------------------------------eeEeecCCCCCCCCCCCCCCC-
Q 045704 150 NDFQGP----------------------------------------------------RLEIRQNSISSEFPYLGSLKS- 176 (362)
Q Consensus 150 n~l~~~----------------------------------------------------~l~l~~n~~~~~~~~~~~l~~- 176 (362)
|.+... .+++.+|.+. .-.+..+.+
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l 201 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANL 201 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccch
Confidence 665543 2455555544 111222333
Q ss_pred -------------------CCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcc
Q 045704 177 -------------------LSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTI 237 (362)
Q Consensus 177 -------------------L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 237 (362)
|+.|+...|.++...+...+.++++++++.|+++ .+|.++..+.+|+.+++..|.+. ..
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l 279 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL 279 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh
Confidence 3333333333332222222256777777777776 55677777777777777777774 55
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCC------------------------
Q 045704 238 FSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM------------------------ 293 (362)
Q Consensus 238 ~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------------------------ 293 (362)
|..+....+|+.|.+.+|.+.. +|.+......|++|+|..|.+...++..+...
T Consensus 280 p~ri~~~~~L~~l~~~~nel~y--ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEY--IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhh--CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 5666667777777777777774 47777777888888888888877544333222
Q ss_pred -CCCCeEeccCCcCccCCChhhhh----ceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 294 -PNLSALSLEHNKFIGMIPTQFAL----KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 294 -~~L~~L~L~~n~l~~~~~~~~~~----~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
+.|+.|.+.+|+++...-..+.. ..|+|++|.+.......+.++ +.|++|+|+||.++.+|+++.+|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-e~LeeL~LSGNkL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-EELEELNLSGNKLTTLPDTVANL 429 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch-HHhHHHhcccchhhhhhHHHHhh
Confidence 23444555555555433222211 166777776644444455556 56777777777777777666554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.5e-18 Score=182.08 Aligned_cols=256 Identities=20% Similarity=0.221 Sum_probs=134.6
Q ss_pred CCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCc-ccCC----------eeEeecC
Q 045704 94 LPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND-FQGP----------RLEIRQN 162 (362)
Q Consensus 94 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~----------~l~l~~n 162 (362)
|+.|++.++.+. .+|..| ...+|++|++.+|++... +..+..+++|+.|+++++. +... .+++.+|
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc-ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 555555554444 344333 234555555555554432 3444455555555554432 1100 1111121
Q ss_pred CCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhh
Q 045704 163 SISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSV 240 (362)
Q Consensus 163 ~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~ 240 (362)
.....+|. +.++++|+.|++++|.....+|..+. ++|+.|++++|.....+|.. ..+|++|++++|.+.. +|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~ 743 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSN 743 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-cccc
Confidence 11112222 44444455555544432223333332 44444444444333222221 2344455555554432 2222
Q ss_pred hcCCCCCcEEEccCCCCCCC-----CC-CCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhh
Q 045704 241 LFDHPSLQQLTLSYNNFTSL-----QV-PANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314 (362)
Q Consensus 241 l~~~~~L~~L~L~~n~l~~~-----~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 314 (362)
+ .+++|++|.+.++....+ .+ +.....+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|...
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 1 344444444444221100 00 1111234678999999998777789999999999999999986655666544
Q ss_pred hh---ceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 315 AL---KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 315 ~~---~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
.. ..|++++|.....+|.. . .+|++|+|++|.++.+|..+..+
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~---~-~nL~~L~Ls~n~i~~iP~si~~l 868 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDI---S-TNISDLNLSRTGIEEVPWWIEKF 868 (1153)
T ss_pred CccccCEEECCCCCcccccccc---c-cccCEeECCCCCCccChHHHhcC
Confidence 22 28999998665666653 2 58899999999999999887655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=4.8e-19 Score=174.38 Aligned_cols=236 Identities=27% Similarity=0.314 Sum_probs=171.8
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC--------eeEeecCC
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP--------RLEIRQNS 163 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~l~l~~n~ 163 (362)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++.+ |. ..++|++|++++|+++.. .+++..|.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCc
Confidence 34678999999998 6787775 4899999999999975 44 257899999999988754 45666666
Q ss_pred CCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcC
Q 045704 164 ISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFD 243 (362)
Q Consensus 164 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 243 (362)
+..... ...+|+.|++++|.++ .+|. ..++|+.|++++|++.+ +|.. ...|+.|++++|.+++ +|. -
T Consensus 274 L~~Lp~---lp~~L~~L~Ls~N~Lt-~LP~-~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---l 340 (788)
T PRK15387 274 LTHLPA---LPSGLCKLWIFGNQLT-SLPV-LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---L 340 (788)
T ss_pred hhhhhh---chhhcCEEECcCCccc-cccc-cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---c
Confidence 654332 1246777888888777 3444 33678888888888773 4432 2357777888888764 332 1
Q ss_pred CCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhceeeccc
Q 045704 244 HPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGG 323 (362)
Q Consensus 244 ~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~l~~ 323 (362)
..+|+.|++++|+++.+ |.. .++|+.|++++|++.+ +|.. ..+|+.|++++|++++.++..-....|++++
T Consensus 341 p~~Lq~LdLS~N~Ls~L--P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 341 PSGLQELSVSDNQLASL--PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSG 411 (788)
T ss_pred ccccceEecCCCccCCC--CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCcccCCCEEEccC
Confidence 25789999999998854 543 3578888999999886 4443 3579999999999986543322233899999
Q ss_pred ccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 324 NYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 324 N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
|++++ +|... .+|+.|++++|+|+.+|++++++
T Consensus 412 N~Lss-IP~l~----~~L~~L~Ls~NqLt~LP~sl~~L 444 (788)
T PRK15387 412 NRLTS-LPMLP----SGLLSLSVYRNQLTRLPESLIHL 444 (788)
T ss_pred CcCCC-CCcch----hhhhhhhhccCcccccChHHhhc
Confidence 99975 67543 46788999999999999988765
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-21 Score=171.30 Aligned_cols=247 Identities=26% Similarity=0.278 Sum_probs=160.1
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcC-CcCCccchhhhcCCCCCcE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSG-NSFKCLIHASVGSLSQLEE 144 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~ 144 (362)
-+...+.|+|..|.|+...+.+|+.+++||+|||++|.|+.+.|.+|.+++.|..|.+.+ |+|+.+...+|.++..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 366788999999999988788999999999999999999988999999999998888887 9999998889999999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCC-Ccc--cCCcEEEeeCCccC----------
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPP-TFP--TSLVELSVRNNNLV---------- 210 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~l~--~~L~~L~l~~n~l~---------- 210 (362)
|.+..|.+.-. ... +..+++|..|.+.+|.+. .++. .+. ..++.+.+..|.+.
T Consensus 145 LllNan~i~Ci------------r~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 145 LLLNANHINCI------------RQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred HhcChhhhcch------------hHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhh
Confidence 99987776522 112 556667777777777665 3333 333 45555555555421
Q ss_pred --CCCcccccCCCCCCEEEccCCcCCC--------------------------cchhhhcCCCCCcEEEccCCCCCCCCC
Q 045704 211 --GNVPENFGDMEFLQVLDLSRNKLSG--------------------------TIFSVLFDHPSLQQLTLSYNNFTSLQV 262 (362)
Q Consensus 211 --~~~~~~l~~l~~L~~L~ls~n~l~~--------------------------~~~~~l~~~~~L~~L~L~~n~l~~~~l 262 (362)
...+..+++..-.....+.+.++.. .+...|..+++|+.|++++|+++.+.
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~- 290 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE- 290 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-
Confidence 1122222222222222222222221 22244556666666666666666543
Q ss_pred CCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccc
Q 045704 263 PANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYL 326 (362)
Q Consensus 263 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l 326 (362)
+.++.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|... +|++-.|.+
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 4455555666666666666665555556666666666666666666655555433 555555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.7e-18 Score=171.40 Aligned_cols=228 Identities=25% Similarity=0.369 Sum_probs=178.6
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY- 170 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~- 170 (362)
.+.+.|++++++++ .+|..+. +.|+.|++++|+++.+ |..+. ++|++|++++|.++. +|.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-------------LP~~ 238 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-------------IPAT 238 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-------------CChh
Confidence 45789999999998 5676553 5899999999999976 44443 589999999887652 222
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEE
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L 250 (362)
+ ..+|+.|++++|.+. .+|..+..+|+.|++++|++. .+|..+. ++|+.|++++|.+++. |..+ .++|+.|
T Consensus 239 l--~~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L 309 (754)
T PRK15370 239 L--PDTIQEMELSINRIT-ELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHL 309 (754)
T ss_pred h--hccccEEECcCCccC-cCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccc--hhhHHHH
Confidence 2 247999999999998 678777789999999999998 5676654 5899999999999854 3333 2579999
Q ss_pred EccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh--ceeecccccccc
Q 045704 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL--KRLLWGGNYLFG 328 (362)
Q Consensus 251 ~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~l~~N~l~~ 328 (362)
++++|.++.+ |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+.. ..|++++|+++
T Consensus 310 ~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 310 NVQSNSLTAL--PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLPPTITTLDVSRNALT- 380 (754)
T ss_pred HhcCCccccC--Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhcCCcCEEECCCCcCC-
Confidence 9999999854 5433 3689999999999987 555554 799999999999985 4544432 29999999997
Q ss_pred cCChhhhcCCCCCcEEEecCCCCCCCCCccc
Q 045704 329 PISGHLMGMKPGFANVSLVDNCLYMCPEMFF 359 (362)
Q Consensus 329 ~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~ 359 (362)
.+|..+. ..|+.|++++|+|+.+|..+.
T Consensus 381 ~LP~~l~---~sL~~LdLs~N~L~~LP~sl~ 408 (754)
T PRK15370 381 NLPENLP---AALQIMQASRNNLVRLPESLP 408 (754)
T ss_pred CCCHhHH---HHHHHHhhccCCcccCchhHH
Confidence 5676653 368999999999999998654
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=6.5e-20 Score=176.55 Aligned_cols=239 Identities=29% Similarity=0.374 Sum_probs=151.8
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCC
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYL 171 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~ 171 (362)
.+|+++++++|.+. .+|+.+..+.+|+.+++.+|.++.. |..+....+|+.|+...|. +.-.+|..
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~ne------------l~yip~~l 306 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNE------------LEYIPPFL 306 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhh------------hhhCCCcc
Confidence 35556666666665 4445555666666666666665433 4555555555555555444 44455557
Q ss_pred CCCCCCCEEeCcccccCCCCCCCcc----cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 045704 172 GSLKSLSFLDASDNNITGKIPPTFP----TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247 (362)
Q Consensus 172 ~~l~~L~~L~l~~n~~~~~~~~~l~----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L 247 (362)
..++.|+.|++..|.+. ..|..+. ..++.|..+.|++.......=...+.|+.|.+.+|.++...-..+.++.+|
T Consensus 307 e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 77889999999999887 4555443 345666666666652221112234567777778887777666667777788
Q ss_pred cEEEccCCCCCCCCCCC-CcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc---eeeccc
Q 045704 248 QQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK---RLLWGG 323 (362)
Q Consensus 248 ~~L~L~~n~l~~~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~L~l~~ 323 (362)
+.|+|++|++..+ |+ .+..++.|+.|++++|+++. +|..+..++.|+.|...+|++...+ +..... .+|++-
T Consensus 386 KVLhLsyNrL~~f--pas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSF--PASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred eeeeecccccccC--CHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc
Confidence 8888888877754 33 45667777788888888775 5677777777888877777777554 222211 778887
Q ss_pred ccccccCChhhhcCCCCCcEEEecCCC
Q 045704 324 NYLFGPISGHLMGMKPGFANVSLVDNC 350 (362)
Q Consensus 324 N~l~~~~~~~~~~~~~~L~~L~L~~N~ 350 (362)
|+++...-..-... |+|++||+++|.
T Consensus 462 N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred chhhhhhhhhhCCC-cccceeeccCCc
Confidence 77765433333333 578888888875
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.7e-19 Score=163.19 Aligned_cols=154 Identities=23% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCcEEEeeCCccCCC----CcccccCCCCCCEEEccCCcCCCc----chhhhcCCCCCcEEEccCCCCCCCC---CCCCc
Q 045704 198 SLVELSVRNNNLVGN----VPENFGDMEFLQVLDLSRNKLSGT----IFSVLFDHPSLQQLTLSYNNFTSLQ---VPANM 266 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~---l~~~~ 266 (362)
+|+.|++++|.+++. ++..+..+++|++|++++|.+++. .+..+...++|++|++++|.+++.. +...+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 445555555544421 222344445566666666655532 1222334455666666666554321 11223
Q ss_pred CCCCCCCEEEccCCcCCCCChhhhc-----CCCCCCeEeccCCcCccCCCh----hhh----hceeeccccccccc----
Q 045704 267 GLTSKLVALELSYNELGGFLPAYLA-----SMPNLSALSLEHNKFIGMIPT----QFA----LKRLLWGGNYLFGP---- 329 (362)
Q Consensus 267 ~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~----~~~----~~~L~l~~N~l~~~---- 329 (362)
..+++|++|++++|.+.+.....+. ..+.|+.|++++|.++..... .+. ..++++++|.++..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 3445566666666655542111111 124566666666665421111 111 11566666666543
Q ss_pred CChhhhcCCCCCcEEEecCCCC
Q 045704 330 ISGHLMGMKPGFANVSLVDNCL 351 (362)
Q Consensus 330 ~~~~~~~~~~~L~~L~L~~N~l 351 (362)
+...+....+.|+++++.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCchhhcccCCCCC
Confidence 3333333335777777777764
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=8.6e-20 Score=160.62 Aligned_cols=196 Identities=23% Similarity=0.223 Sum_probs=160.4
Q ss_pred CCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCC-CcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCC
Q 045704 63 IVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISD-NSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQ 141 (362)
Q Consensus 63 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 141 (362)
.|+...+++.|+|++|+|+..-|.+|.+++++.+|-+.+ |+|+......|.++..|+.|.+.-|++..+..++|..+++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 356688999999999999999999999999988876655 9999666678999999999999999988888888888888
Q ss_pred CcEEEccCCcccCC------------------------------------------------------------------
Q 045704 142 LEELYLDNNDFQGP------------------------------------------------------------------ 155 (362)
Q Consensus 142 L~~L~L~~n~l~~~------------------------------------------------------------------ 155 (362)
|..|.+.+|.+...
T Consensus 166 l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~ 245 (498)
T KOG4237|consen 166 LSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL 245 (498)
T ss_pred cchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh
Confidence 88888888876543
Q ss_pred -e---e--Ee-ecCCCCCCCCC--CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCC
Q 045704 156 -R---L--EI-RQNSISSEFPY--LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQ 224 (362)
Q Consensus 156 -~---l--~l-~~n~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 224 (362)
. + .+ +.+...+.-|. |..+++|+.|++++|.++.+-+..|. ..+++|++..|++...-...|.++..|+
T Consensus 246 c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 246 CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLK 325 (498)
T ss_pred hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccce
Confidence 0 0 11 22233344454 88899999999999999987777777 8899999999999866667788999999
Q ss_pred EEEccCCcCCCcchhhhcCCCCCcEEEccCCCCC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFT 258 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 258 (362)
.|++.+|+|+...|..|..+.+|.+|.+-.|.+.
T Consensus 326 tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 326 TLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999999889999998999999998887654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.5e-19 Score=162.49 Aligned_cols=252 Identities=27% Similarity=0.211 Sum_probs=180.7
Q ss_pred CCeEEEEEecCCCCccc----ccccccCCCCCCEEeCCCCcCCC------CCchhhcCCCCCCEEeCcCCcCCccchhhh
Q 045704 67 SARVTEITLDPVGYPGS----LISSKWNLLHLPTLDISDNSFSG------SVPDSLSKLVRRKRLGLSGNSFKCLIHASV 136 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 136 (362)
...+++|++.++.+++. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+....+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 45589999999998543 55567788889999999988862 244567789999999999999987666666
Q ss_pred cCCCC---CcEEEccCCcccCCeeEeecCCCCCCCCCCCCC-CCCCEEeCcccccCCCCCCC----cc--cCCcEEEeeC
Q 045704 137 GSLSQ---LEELYLDNNDFQGPRLEIRQNSISSEFPYLGSL-KSLSFLDASDNNITGKIPPT----FP--TSLVELSVRN 206 (362)
Q Consensus 137 ~~l~~---L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~----l~--~~L~~L~l~~ 206 (362)
..+.+ |++|++++|.++...... ....+..+ ++|+.|++++|.+++..... +. .+|++|++++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~-------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRL-------LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHH-------HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 65555 999999988765211100 00114455 78999999999988533222 22 5899999999
Q ss_pred CccCCC----CcccccCCCCCCEEEccCCcCCCcc----hhhhcCCCCCcEEEccCCCCCCCCCCCCcC----CCCCCCE
Q 045704 207 NNLVGN----VPENFGDMEFLQVLDLSRNKLSGTI----FSVLFDHPSLQQLTLSYNNFTSLQVPANMG----LTSKLVA 274 (362)
Q Consensus 207 n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~----~~~~L~~ 274 (362)
|.+.+. ++..+...++|+.|++++|.+++.. ...+..+++|++|++++|.+++..+..... ..+.|++
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 998742 3344566789999999999987543 345667899999999999988532111111 2478999
Q ss_pred EEccCCcCCC----CChhhhcCCCCCCeEeccCCcCccCCChhhhhc---------eeeccccc
Q 045704 275 LELSYNELGG----FLPAYLASMPNLSALSLEHNKFIGMIPTQFALK---------RLLWGGNY 325 (362)
Q Consensus 275 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---------~L~l~~N~ 325 (362)
|++++|.+++ .+...+..+++|+++++++|.+.......+... ++++.+|.
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9999999973 234556777899999999999997654433321 66666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2e-18 Score=135.86 Aligned_cols=161 Identities=29% Similarity=0.460 Sum_probs=126.8
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
+.++.+++.|.+++|+++ .+|..+..+.+|+.|++++|+++.. |..++.+++|+.|+++-|.+. .
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-------------~ 93 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-------------I 93 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-------------c
Confidence 456677888888888888 6677788888888888888888865 677888888888888877664 4
Q ss_pred CCC-CCCCCCCCEEeCcccccCC-CCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcC
Q 045704 168 FPY-LGSLKSLSFLDASDNNITG-KIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFD 243 (362)
Q Consensus 168 ~~~-~~~l~~L~~L~l~~n~~~~-~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 243 (362)
.|. |+.++.|+.||+.+|++.. ..|..|. +.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 555 8888888888888887753 4566665 88888899999887 78888889999999999888876 56777888
Q ss_pred CCCCcEEEccCCCCCCCCCCCCcC
Q 045704 244 HPSLQQLTLSYNNFTSLQVPANMG 267 (362)
Q Consensus 244 ~~~L~~L~L~~n~l~~~~l~~~~~ 267 (362)
+..|++|.+.+|+++. +|+.++
T Consensus 172 lt~lrelhiqgnrl~v--lppel~ 193 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTV--LPPELA 193 (264)
T ss_pred HHHHHHHhcccceeee--cChhhh
Confidence 8888888888888874 354433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.4e-17 Score=129.78 Aligned_cols=158 Identities=30% Similarity=0.484 Sum_probs=103.7
Q ss_pred CCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcc
Q 045704 138 SLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPE 215 (362)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~ 215 (362)
++..++.|.++.|+++ ..+|.+..+.+|+.|++.+|++. ..|..+. +.|+.|++.-|++. .+|.
T Consensus 31 ~~s~ITrLtLSHNKl~------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred chhhhhhhhcccCcee------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc
Confidence 4455555566655443 34455667777777777777776 4555555 66777777777666 6677
Q ss_pred cccCCCCCCEEEccCCcCCC-cchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC
Q 045704 216 NFGDMEFLQVLDLSRNKLSG-TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP 294 (362)
Q Consensus 216 ~l~~l~~L~~L~ls~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 294 (362)
.|+.++.|+.||+++|.+.+ ..|..|..+..|+.|++++|.+.- +|..++.+++|+.|.++.|.+.. .|..++.+.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndll~-lpkeig~lt 173 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLT 173 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCchhh-CcHHHHHHH
Confidence 77777777777777776653 456666666777777777777763 36666777777777777776664 566667777
Q ss_pred CCCeEeccCCcCccCCCh
Q 045704 295 NLSALSLEHNKFIGMIPT 312 (362)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~ 312 (362)
.|++|.+.+|.++-.+|+
T Consensus 174 ~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHhcccceeeecChh
Confidence 777777777776654443
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=6e-14 Score=129.41 Aligned_cols=188 Identities=28% Similarity=0.384 Sum_probs=129.4
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCC
Q 045704 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLG 172 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~ 172 (362)
.-...|++.|.+. ++|..+..+..|+.+.|+.|.+..+ |.++.++..|++|+++.|+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~Nq--------------------- 132 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQ--------------------- 132 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccch---------------------
Confidence 3445566666665 5565555555666666666655543 5555555555555555444
Q ss_pred CCCCCCEEeCcccccCCCCCCCcc-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEE
Q 045704 173 SLKSLSFLDASDNNITGKIPPTFP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~ 251 (362)
++ ..|..++ --|+.|.+++|++. .+|..++..+.|..||.+.|.+. .+|..++.+.+|+.|.
T Consensus 133 --------------lS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 133 --------------LS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred --------------hh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 44 3444444 56777777777776 77788888888888888888887 5556677888888888
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc-------eeecccc
Q 045704 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK-------RLLWGGN 324 (362)
Q Consensus 252 L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------~L~l~~N 324 (362)
+..|++.. +|..+..++ |..||++.|++.. +|..|..|.+|++|-|.+|++.+. |..++.. +|+..-+
T Consensus 196 vrRn~l~~--lp~El~~Lp-Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 196 VRRNHLED--LPEELCSLP-LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Hhhhhhhh--CCHHHhCCc-eeeeecccCceee-cchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 88888874 477666554 8889999888885 788888899999999999988854 4444332 5666555
Q ss_pred c
Q 045704 325 Y 325 (362)
Q Consensus 325 ~ 325 (362)
+
T Consensus 271 q 271 (722)
T KOG0532|consen 271 Q 271 (722)
T ss_pred c
Confidence 3
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=1e-11 Score=122.54 Aligned_cols=120 Identities=31% Similarity=0.432 Sum_probs=98.4
Q ss_pred cceecCcCC-CCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchh
Q 045704 56 CGLRCDRIV-SGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHA 134 (362)
Q Consensus 56 ~g~~c~~~~-~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 134 (362)
.||.|.... .....++.|+|+++.+.|.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+
T Consensus 405 ~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 405 SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred ccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 899996311 1224699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCC-CCCCCEEeCccccc
Q 045704 135 SVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGS-LKSLSFLDASDNNI 187 (362)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~-l~~L~~L~l~~n~~ 187 (362)
.++++++|++|+|++|.++ +.+|. +.. ..++..+++.+|..
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~------------g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLS------------GRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HHhcCCCCCEEECcCCccc------------ccCChHHhhccccCceEEecCCcc
Confidence 9999999999999977654 44554 333 23455666666653
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=8.7e-13 Score=115.21 Aligned_cols=235 Identities=23% Similarity=0.280 Sum_probs=166.1
Q ss_pred CCeEEEEEecCCCCccc----ccccccCCCCCCEEeCCCCc---CCCCCch-------hhcCCCCCCEEeCcCCcCCccc
Q 045704 67 SARVTEITLDPVGYPGS----LISSKWNLLHLPTLDISDNS---FSGSVPD-------SLSKLVRRKRLGLSGNSFKCLI 132 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~---i~~~~~~-------~~~~l~~L~~L~L~~n~~~~~~ 132 (362)
...+++|+|++|.+... +...+.+.++|+..++++-- ....+|+ ++..+++|++|+||+|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 57899999999998543 44556677889998887642 2234554 3456789999999999987554
Q ss_pred hhh----hcCCCCCcEEEccCCcccCCe--------eEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc----
Q 045704 133 HAS----VGSLSQLEELYLDNNDFQGPR--------LEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP---- 196 (362)
Q Consensus 133 ~~~----~~~l~~L~~L~L~~n~l~~~~--------l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---- 196 (362)
+.. +..+..|++|+|.+|.+.... ..+..+. ....-++|+++.+..|.+.......+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~k------k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNK------KAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHh------ccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 443 456789999999999876430 0111111 144567899999999988744333322
Q ss_pred --cCCcEEEeeCCccCCC----CcccccCCCCCCEEEccCCcCCCc----chhhhcCCCCCcEEEccCCCCCCCCCC---
Q 045704 197 --TSLVELSVRNNNLVGN----VPENFGDMEFLQVLDLSRNKLSGT----IFSVLFDHPSLQQLTLSYNNFTSLQVP--- 263 (362)
Q Consensus 197 --~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~l~--- 263 (362)
+.|+.+.+..|.+... +..++..+++|+.||+.+|-++.. +...+..+++|++|++++|.+..-...
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 6889999999988633 345577899999999999988754 345566788999999999988753111
Q ss_pred -CCcCCCCCCCEEEccCCcCCCC----ChhhhcCCCCCCeEeccCCcCc
Q 045704 264 -ANMGLTSKLVALELSYNELGGF----LPAYLASMPNLSALSLEHNKFI 307 (362)
Q Consensus 264 -~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 307 (362)
..-...++|+.+.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1123467899999999988742 2334456789999999999883
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.5e-13 Score=119.10 Aligned_cols=211 Identities=25% Similarity=0.188 Sum_probs=149.7
Q ss_pred cCCCCCCEEeCCCCcCCCCCc--hhhcCCCCCCEEeCcCCcCCccch--hhhcCCCCCcEEEccCCcccCCeeEeecCCC
Q 045704 89 WNLLHLPTLDISDNSFSGSVP--DSLSKLVRRKRLGLSGNSFKCLIH--ASVGSLSQLEELYLDNNDFQGPRLEIRQNSI 164 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~ 164 (362)
.++..|+++.|++..+. ..+ .....+++++.|||+.|-+....+ .....+++|+.|.++.|.+.. ..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--------~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--------FI 188 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--------Cc
Confidence 46778999999999887 333 367789999999999998865432 345678999999999888742 11
Q ss_pred CCCCCCCCCCCCCCEEeCcccccCCCCCCCcc---cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcc-hhh
Q 045704 165 SSEFPYLGSLKSLSFLDASDNNITGKIPPTFP---TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTI-FSV 240 (362)
Q Consensus 165 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~ 240 (362)
.... -..+++|+.|.++.|.++...-..+. ++++.|++..|.....-.....-++.|++||+++|.+-... ...
T Consensus 189 ~s~~--~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 189 SSNT--TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred cccc--hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 1111 12467889999999988732222222 88999999988532222233445678999999999876443 244
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCC-----cCCCCCCCEEEccCCcCCCCC-hhhhcCCCCCCeEeccCCcCccCC
Q 045704 241 LFDHPSLQQLTLSYNNFTSLQVPAN-----MGLTSKLVALELSYNELGGFL-PAYLASMPNLSALSLEHNKFIGMI 310 (362)
Q Consensus 241 l~~~~~L~~L~L~~n~l~~~~l~~~-----~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 310 (362)
.+.++.|+.|+++.+.+.++..|+. ....++|++|++..|++..-. -..+..+++|+.+.+..|++..+-
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence 5678899999999999988877765 456789999999999986421 133456678888888888887553
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=2.1e-11 Score=114.62 Aligned_cols=198 Identities=29% Similarity=0.411 Sum_probs=138.1
Q ss_pred EEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCC-CCcEEEccCCcccCCeeEeecCCCCCCCCCCCCC
Q 045704 96 TLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLS-QLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSL 174 (362)
Q Consensus 96 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l 174 (362)
.+++..+.+. .....+..++.++.|++.+|.++.+ +.....++ +|+.|++++|.+.. ....+..+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~------------l~~~~~~l 162 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES------------LPSPLRNL 162 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh------------hhhhhhcc
Confidence 5677777764 2333455667788888888888776 34445553 78888888777652 11236678
Q ss_pred CCCCEEeCcccccCCCCCCCc--ccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 175 KSLSFLDASDNNITGKIPPTF--PTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
++|+.|+++.|++.. ++... .+.++.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+
T Consensus 163 ~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 163 PNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred ccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence 888888888888874 44443 378888888888887 66665556666888888888533 34455667777787888
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhh
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 314 (362)
.+|++... +..++.++.+++|++++|.++.... +....+++.+++++|.+....+...
T Consensus 240 ~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 240 SNNKLEDL--PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred CCceeeec--cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 88887642 5667777788888888888886443 6777888888888888876655443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=2.6e-12 Score=112.28 Aligned_cols=244 Identities=21% Similarity=0.217 Sum_probs=119.1
Q ss_pred ccccccCCCCCCEEeCCCCcCCCC----CchhhcCCCCCCEEeCcCCcCCc----cchh-------hhcCCCCCcEEEcc
Q 045704 84 LISSKWNLLHLPTLDISDNSFSGS----VPDSLSKLVRRKRLGLSGNSFKC----LIHA-------SVGSLSQLEELYLD 148 (362)
Q Consensus 84 ~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~-------~~~~l~~L~~L~L~ 148 (362)
+-+....+..++.++|++|.+... +...+.+.++|+..++++- +++ .+|+ ++...++|++|+||
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 334455667888999999988743 4455667778888888754 222 2232 34556678888888
Q ss_pred CCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc---------------cCCcEEEeeCCccCCC-
Q 045704 149 NNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP---------------TSLVELSVRNNNLVGN- 212 (362)
Q Consensus 149 ~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---------------~~L~~L~l~~n~l~~~- 212 (362)
+|-+... .+.+.-.-+..+..|++|.+.+|.+.......+. +.|+.+...+|++...
T Consensus 101 DNA~G~~-------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 101 DNAFGPK-------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred ccccCcc-------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 7766521 1111111155566777777777765432222111 4455555555554321
Q ss_pred ---CcccccCCCCCCEEEccCCcCCCc----chhhhcCCCCCcEEEccCCCCCCC---CCCCCcCCCCCCCEEEccCCcC
Q 045704 213 ---VPENFGDMEFLQVLDLSRNKLSGT----IFSVLFDHPSLQQLTLSYNNFTSL---QVPANMGLTSKLVALELSYNEL 282 (362)
Q Consensus 213 ---~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~---~l~~~~~~~~~L~~L~L~~n~l 282 (362)
+...|...+.|+.+.++.|.+... ....+..+++|+.|||.+|.++.. .+...+..++.|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 122233344555555555544321 223344455555555555544421 1111222333444455554444
Q ss_pred CCCChhhh-----cCCCCCCeEeccCCcCccCCChhhhhceeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 283 GGFLPAYL-----ASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 283 ~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
...-...+ ...|+|+.+.+.+|.++..... .+..++... |.|..|+|++|.+.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----------------~la~~~~ek-~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL----------------ALAACMAEK-PDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHH----------------HHHHHHhcc-hhhHHhcCCccccc
Confidence 43221111 1234444444444444422111 133344443 56666666666663
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.9e-11 Score=99.86 Aligned_cols=130 Identities=25% Similarity=0.241 Sum_probs=51.5
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcE
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~ 249 (362)
+.+..++++|++.+|.++..-.-... .+++.|++++|++.. + +.+..++.|++|++++|.++...+.....+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 44445566677777766532111111 577778888888763 3 35777889999999999998654433345789999
Q ss_pred EEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC---hhhhcCCCCCCeEecc
Q 045704 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL---PAYLASMPNLSALSLE 302 (362)
Q Consensus 250 L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~ 302 (362)
|++++|+|..+..-..+..+++|+.|++.+|+++... ...+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999987654456777889999999999887542 2356778899888753
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1e-12 Score=121.35 Aligned_cols=170 Identities=30% Similarity=0.403 Sum_probs=133.6
Q ss_pred EeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC
Q 045704 180 LDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257 (362)
Q Consensus 180 L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 257 (362)
.+++.|.+. .+|..+. -.|+.+.+..|.+. .+|..+..+..|+.|+++.|+++ ..|..++.++ |+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 344445444 4555544 56666667777776 77888888889999999999887 4555566654 88999999999
Q ss_pred CCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc--eeecccccccccCChhhh
Q 045704 258 TSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK--RLLWGGNYLFGPISGHLM 335 (362)
Q Consensus 258 ~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~l~~N~l~~~~~~~~~ 335 (362)
+. +|..++...+|..|+.+.|.+.. .|..++.+.+|+.+++..|++...+++..... .||++.|+++ .+|-+|.
T Consensus 156 ~~--lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 156 TS--LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred cc--CCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhh
Confidence 85 47778888899999999999987 56667889999999999999987776655333 8999999995 6999999
Q ss_pred cCCCCCcEEEecCCCCCCCCCcc
Q 045704 336 GMKPGFANVSLVDNCLYMCPEMF 358 (362)
Q Consensus 336 ~~~~~L~~L~L~~N~l~~~P~~~ 358 (362)
++ .+|++|-|.+|.++.=|..+
T Consensus 232 ~m-~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 232 KM-RHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred hh-hhheeeeeccCCCCCChHHH
Confidence 99 69999999999998777654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=6.8e-11 Score=111.17 Aligned_cols=196 Identities=31% Similarity=0.475 Sum_probs=151.6
Q ss_pred EEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCC-CCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCc
Q 045704 73 ITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLV-RRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND 151 (362)
Q Consensus 73 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 151 (362)
+++..+.+... ...+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+... |..+..++.|+.|++++|+
T Consensus 98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence 44444444222 223445578999999999998 6676677774 999999999999876 4668899999999999888
Q ss_pred ccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCC--cccCCcEEEeeCCccCCCCcccccCCCCCCEEEc
Q 045704 152 FQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPT--FPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDL 228 (362)
Q Consensus 152 l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~--l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 228 (362)
+.. ++. ....+.|+.|++++|.+. .+|.. ....|+++.+++|.+. ..+..+..+.++..+.+
T Consensus 175 l~~-------------l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 175 LSD-------------LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhh-------------hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence 762 233 337889999999999998 56665 3367999999999654 56677888899999999
Q ss_pred cCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhh
Q 045704 229 SRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL 290 (362)
Q Consensus 229 s~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 290 (362)
.+|++.. .+..+..++.+++|++++|.++.+ +. ++...+++.|++++|.+...++...
T Consensus 240 ~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 240 SNNKLED-LPESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred CCceeee-ccchhccccccceecccccccccc--cc-ccccCccCEEeccCccccccchhhh
Confidence 9988763 356778888999999999999965 33 7788899999999999887655543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.9e-12 Score=113.04 Aligned_cols=188 Identities=22% Similarity=0.199 Sum_probs=137.0
Q ss_pred cCCCCCCEEeCcCCcCCccch-hhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCC
Q 045704 113 SKLVRRKRLGLSGNSFKCLIH-ASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKI 191 (362)
Q Consensus 113 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 191 (362)
+++++|+.+.|.++.+..... .....+++++.|+|+.|-+... .........+|+|+.|+++.|.+.-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw---------~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW---------FPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH---------HHHHHHHHhcccchhcccccccccCCc
Confidence 567899999999998875532 3456789999999998876521 111111557899999999999886433
Q ss_pred CCCcc---cCCcEEEeeCCccCCC-CcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcC
Q 045704 192 PPTFP---TSLVELSVRNNNLVGN-VPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMG 267 (362)
Q Consensus 192 ~~~l~---~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~ 267 (362)
..... +.++.|.++.|+++.. +......+|+|+.|++..|.....-.....-+..|++|+|++|.+.+++.-...+
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 33222 8999999999999842 3334567899999999999533232333344678999999999988765445678
Q ss_pred CCCCCCEEEccCCcCCCC-Chhh-----hcCCCCCCeEeccCCcCccC
Q 045704 268 LTSKLVALELSYNELGGF-LPAY-----LASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 268 ~~~~L~~L~L~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~ 309 (362)
.++.|+.|+++.+.+.+. .|+. ....++|++|++..|++...
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 889999999999988763 2222 35578999999999998543
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=5.4e-10 Score=110.45 Aligned_cols=106 Identities=27% Similarity=0.441 Sum_probs=84.0
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
.++.|++++|.+.+..|..+..+++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 36778888888888888888888888888888888876 56777788888888888888888888888888888888888
Q ss_pred cCCcCccCCChhhhhc-----eeecccccccc
Q 045704 302 EHNKFIGMIPTQFALK-----RLLWGGNYLFG 328 (362)
Q Consensus 302 ~~n~l~~~~~~~~~~~-----~L~l~~N~l~~ 328 (362)
++|+++|.+|..+... .+++.+|....
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 8888888888776542 67777775443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.8e-10 Score=94.18 Aligned_cols=57 Identities=28% Similarity=0.353 Sum_probs=24.4
Q ss_pred cCCcEEEeeCCccCCC-CcccccCCCCCCEEEccCCcCCCcc---hhhhcCCCCCcEEEcc
Q 045704 197 TSLVELSVRNNNLVGN-VPENFGDMEFLQVLDLSRNKLSGTI---FSVLFDHPSLQQLTLS 253 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~---~~~l~~~~~L~~L~L~ 253 (362)
++|++|++++|++... .-..+..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4555555555555421 1134566778888888888776432 2334567777777643
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.3e-10 Score=99.99 Aligned_cols=132 Identities=25% Similarity=0.270 Sum_probs=97.4
Q ss_pred CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCe
Q 045704 219 DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSA 298 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 298 (362)
..+.|+++|+++|.++ .+.+...-.|.++.|++++|.+..+ ..+..+++|+.||+++|.++. ...+-..+-+++.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 3466888999999887 4555666778899999999998864 247778889999999998875 4455566778889
Q ss_pred EeccCCcCccCC--Chhhhhceeeccccccccc-CChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 299 LSLEHNKFIGMI--PTQFALKRLLWGGNYLFGP-ISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 299 L~L~~n~l~~~~--~~~~~~~~L~l~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
|.|++|.+...- ...++...||+++|++... --..++.+ |-|+.+.|.+|++..+|+
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCccccch
Confidence 999998876431 2233334889999988542 22456677 789999999999887775
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=4.3e-10 Score=75.75 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=47.6
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcc
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 152 (362)
|+|++|++++|++....+..|.++++|++|++++|+++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888755556777888888888888888877777888888888888887764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.6e-10 Score=99.45 Aligned_cols=132 Identities=28% Similarity=0.379 Sum_probs=99.0
Q ss_pred CCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEE
Q 045704 173 SLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L 250 (362)
....|+++|+++|.++ .+..... +.++.|+++.|++.. + ..+..+++|+.||+++|.++. ...+-..+.+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 3456888899998887 3444333 888999999998873 2 347788899999999998873 33444567788999
Q ss_pred EccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC-hhhhcCCCCCCeEeccCCcCccCCC
Q 045704 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL-PAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 251 ~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
.|+.|.+.++ ..++.+-+|.+||+++|+|.... -..++++|.|+.+.|.+|++.+.+.
T Consensus 358 ~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999988764 35666778899999999887632 2457888999999999999887654
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.1e-11 Score=100.71 Aligned_cols=197 Identities=21% Similarity=0.177 Sum_probs=135.0
Q ss_pred CCCCEEeCCCCcCCC-CCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCc-ccCCeeEeecCCCCCCCC
Q 045704 92 LHLPTLDISDNSFSG-SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND-FQGPRLEIRQNSISSEFP 169 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~l~l~~n~~~~~~~ 169 (362)
..|+++||++..|+. .+...++.+.+|+.|.|.++++...+...+++...|+.|+++.+. ++ .|..+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t-------~n~~~l--- 254 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT-------ENALQL--- 254 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc-------hhHHHH---
Confidence 358999999999973 234457789999999999999999888899999999999999765 22 111110
Q ss_pred CCCCCCCCCEEeCcccccCCCCCCCc----ccCCcEEEeeCCccC---CCCcccccCCCCCCEEEccCCc-CCCcchhhh
Q 045704 170 YLGSLKSLSFLDASDNNITGKIPPTF----PTSLVELSVRNNNLV---GNVPENFGDMEFLQVLDLSRNK-LSGTIFSVL 241 (362)
Q Consensus 170 ~~~~l~~L~~L~l~~n~~~~~~~~~l----~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l 241 (362)
.+.+++.|..|+++.+.+....-... .++++.|++++++-. ..+......+++|..||+++|. ++......+
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 16678899999999998764332222 288999999987632 1223334678899999999864 344444566
Q ss_pred cCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCe
Q 045704 242 FDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSA 298 (362)
Q Consensus 242 ~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 298 (362)
..++.|++|.++.|+.-....-..++..|.|.+|++-++--.+.+.-....+++|+.
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 778889999998887432111123566778888888777544433333344555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=5.1e-09 Score=70.47 Aligned_cols=60 Identities=35% Similarity=0.509 Sum_probs=38.1
Q ss_pred CCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC
Q 045704 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 257 (362)
+|++|++++|++....+..|.++++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666644445666666666666666666666666666666666666666653
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=6.6e-10 Score=104.95 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=26.4
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCccc
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQ 153 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 153 (362)
..++.+.++.|.+. .+-..+..+++|+.|++.+|.+..+.. .+..+++|++|++++|.|+
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~ 131 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKIT 131 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccc
Confidence 33444444444444 122224444455555555555544321 1344455555555544443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=8e-09 Score=104.76 Aligned_cols=107 Identities=25% Similarity=0.263 Sum_probs=79.6
Q ss_pred CCeEEEEEecCCC--CcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcE
Q 045704 67 SARVTEITLDPVG--YPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEE 144 (362)
Q Consensus 67 ~~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 144 (362)
.+.++.|-+..+. +.......|..+|.|+.||+++|.--+.+|+.++.+-+|++|++++..+... |..+.++++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhhhe
Confidence 4468888888876 4433344577799999999998776678999999999999999999998854 888999999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccc
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNN 186 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~ 186 (362)
|++..+.-. ..++. ...+.+|++|.+....
T Consensus 623 Lnl~~~~~l------------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRL------------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ecccccccc------------ccccchhhhcccccEEEeeccc
Confidence 999865521 11233 4447777777776554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=2.1e-09 Score=101.48 Aligned_cols=126 Identities=31% Similarity=0.320 Sum_probs=83.6
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
..+..+.+..+.+.. +-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+.+. .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 334444455555542 2334677788899999999987 34433677889999999999988773 4667777899999
Q ss_pred cCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCC--CcccCCcEEEeeCCccC
Q 045704 148 DNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPP--TFPTSLVELSVRNNNLV 210 (362)
Q Consensus 148 ~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~l~~~L~~L~l~~n~l~ 210 (362)
++|.++. +..+..++.|+.+++++|.+...-+. .-...++.+++.+|.+.
T Consensus 148 ~~N~i~~-------------~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISD-------------ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchh-------------ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 9888762 22344567777777777777643331 22256666666666654
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.1e-08 Score=88.12 Aligned_cols=207 Identities=21% Similarity=0.164 Sum_probs=131.8
Q ss_pred CCCCCCEEeCCCCcCCC--CCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 90 NLLHLPTLDISDNSFSG--SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
..+.++++||..|.|+. ++..-+.++|.|+.|+|+.|.+...+-..-....+|+.|.|.+..+... ..
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~----------~~ 138 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT----------QS 138 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh----------hh
Confidence 45678888888888873 3444567888888888888887655332213556788888887765421 11
Q ss_pred CCCCCCCCCCCEEeCcccccCC-----CCCCCcccCCcEEEeeCCccCC--CCcccccCCCCCCEEEccCCcCCCcch-h
Q 045704 168 FPYLGSLKSLSFLDASDNNITG-----KIPPTFPTSLVELSVRNNNLVG--NVPENFGDMEFLQVLDLSRNKLSGTIF-S 239 (362)
Q Consensus 168 ~~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~-~ 239 (362)
-..+..+|.+++|.++.|.+.. .-...+.+.+++|.+..|.... .......-++++..+-+..|.+...-. .
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek 218 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEK 218 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcc
Confidence 1125567778888888774321 1112222566677666665320 111122335778888888887754322 3
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh------hhhcCCCCCCeEeccCCcCcc
Q 045704 240 VLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP------AYLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 240 ~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~ 308 (362)
....++.+-.|+|+.++|.++.--+.+..++.|..|.++++.+.+... -.++.+++++.|+=+ +++.
T Consensus 219 ~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 344567777889999998887656677888889999999998765322 124667788877644 5553
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=9.3e-08 Score=97.15 Aligned_cols=148 Identities=24% Similarity=0.257 Sum_probs=102.2
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc--CCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS--FSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
..++.+.+.++.+. .++... ..++|++|-+..|. +.......|..++.|++|||++|.-.+..|..++++-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45666666666553 222222 34579999998886 554445568889999999999988777889999999999999
Q ss_pred EccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC--CCCcccccCCC
Q 045704 146 YLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV--GNVPENFGDME 221 (362)
Q Consensus 146 ~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~--~~~~~~l~~l~ 221 (362)
+++++.+. ..+..+.++..|.+|++..+......+.... .+|++|.+...... ...-..+..+.
T Consensus 601 ~L~~t~I~------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 601 DLSDTGIS------------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred cccCCCcc------------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 99977654 2333388999999999998876544544444 88999988765422 12223344555
Q ss_pred CCCEEEcc
Q 045704 222 FLQVLDLS 229 (362)
Q Consensus 222 ~L~~L~ls 229 (362)
+|+.+...
T Consensus 669 ~L~~ls~~ 676 (889)
T KOG4658|consen 669 HLENLSIT 676 (889)
T ss_pred chhhheee
Confidence 55555543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=2.3e-09 Score=102.27 Aligned_cols=103 Identities=30% Similarity=0.341 Sum_probs=44.6
Q ss_pred CCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEc
Q 045704 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L 277 (362)
.|...+++.|++. .+..++.-++.++.|+++.|+++.+. .+..+++|+.|||++|.++.+ |..-..-.+|..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc--cccchhhhhheeeee
Confidence 3444444444443 33334444444555555555544332 344445555555555554432 222111122455555
Q ss_pred cCCcCCCCChhhhcCCCCCCeEeccCCcCc
Q 045704 278 SYNELGGFLPAYLASMPNLSALSLEHNKFI 307 (362)
Q Consensus 278 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 307 (362)
++|.++.. ..+.++.+|+.||+++|-+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 55544432 12344445555555555443
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=2.9e-08 Score=84.52 Aligned_cols=234 Identities=20% Similarity=0.211 Sum_probs=151.5
Q ss_pred CCeEEEEEecCCCCcccc----cccccCCCCCCEEeCCCCcC---CCCCc-------hhhcCCCCCCEEeCcCCcCCccc
Q 045704 67 SARVTEITLDPVGYPGSL----ISSKWNLLHLPTLDISDNSF---SGSVP-------DSLSKLVRRKRLGLSGNSFKCLI 132 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~i---~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~ 132 (362)
...+++++|++|.+...- ...+.+-.+|+..++++--. .+.++ +++-+||+|++.+|+.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567889999999986543 33455567788887775422 22333 44677899999999999987655
Q ss_pred hh----hhcCCCCCcEEEccCCcccCC---ee-----EeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc----
Q 045704 133 HA----SVGSLSQLEELYLDNNDFQGP---RL-----EIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP---- 196 (362)
Q Consensus 133 ~~----~~~~l~~L~~L~L~~n~l~~~---~l-----~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---- 196 (362)
|+ .+++-+.|++|.+++|.+... .+ .+..| .....-|.|+.+.+..|.+. ..+....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n------KKaa~kp~Le~vicgrNRle-ngs~~~~a~~l 181 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN------KKAADKPKLEVVICGRNRLE-NGSKELSAALL 181 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH------hhhccCCCceEEEeccchhc-cCcHHHHHHHH
Confidence 54 456778999999999987632 00 11111 12456688999999999886 3443322
Q ss_pred ---cCCcEEEeeCCccCCCCc-----ccccCCCCCCEEEccCCcCCCcc----hhhhcCCCCCcEEEccCCCCCCCCCCC
Q 045704 197 ---TSLVELSVRNNNLVGNVP-----ENFGDMEFLQVLDLSRNKLSGTI----FSVLFDHPSLQQLTLSYNNFTSLQVPA 264 (362)
Q Consensus 197 ---~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~ls~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~l~~ 264 (362)
..++.+.+..|.+...-. ..+..+.+|+.||+.+|.++-.. ...+...+.|++|.+.+|-++......
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 578999999998863311 12345688999999999887543 344456677888888888776532111
Q ss_pred Cc-----CCCCCCCEEEccCCcCCCCC------hhh-hcCCCCCCeEeccCCcCc
Q 045704 265 NM-----GLTSKLVALELSYNELGGFL------PAY-LASMPNLSALSLEHNKFI 307 (362)
Q Consensus 265 ~~-----~~~~~L~~L~L~~n~l~~~~------~~~-~~~l~~L~~L~L~~n~l~ 307 (362)
.+ ...++|..|...+|.+.+.. +.. =..+|-|..+.+.||.+.
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 11 23467777777777665421 111 123556666666677665
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.5e-07 Score=81.20 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=112.4
Q ss_pred CCCeEEEEEecCCCCcc--cccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccc-hhhhcCCCCC
Q 045704 66 GSARVTEITLDPVGYPG--SLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLI-HASVGSLSQL 142 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L 142 (362)
..++|+.++|.+|.++. .+...+.++|.|+.|+++.|++...+-..-..+.+|+.|.|.+..+.... ...+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35789999999999863 45556789999999999999998443322146679999999998876443 3456788999
Q ss_pred cEEEccCCcccCCeeEeecCCCCCCCCC---CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCC-Cccccc
Q 045704 143 EELYLDNNDFQGPRLEIRQNSISSEFPY---LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGN-VPENFG 218 (362)
Q Consensus 143 ~~L~L~~n~l~~~~l~l~~n~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~l~ 218 (362)
++|.++.|.+... .+.++......+. +...+.+..+...-|.+...+ +++..+.+..|.+... -.....
T Consensus 149 telHmS~N~~rq~--n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F-----pnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 149 TELHMSDNSLRQL--NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF-----PNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred hhhhhccchhhhh--ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc-----ccchheeeecCcccchhhcccCC
Confidence 9999999965532 2223333322221 111122222222222222111 4556666666655422 123344
Q ss_pred CCCCCCEEEccCCcCCCc-chhhhcCCCCCcEEEccCCCCCC
Q 045704 219 DMEFLQVLDLSRNKLSGT-IFSVLFDHPSLQQLTLSYNNFTS 259 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~l~~ 259 (362)
.++.+.-|.++.|.+..- ....+.++++|..|.++++.+.+
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 455566666776666532 22556667777777777776543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=4.2e-08 Score=83.57 Aligned_cols=183 Identities=22% Similarity=0.153 Sum_probs=94.2
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc------cCCcEEEeeCCccCCC----Cccc---------ccCCCCCCEEEccCC
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP------TSLVELSVRNNNLVGN----VPEN---------FGDMEFLQVLDLSRN 231 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~------~~L~~L~l~~n~l~~~----~~~~---------l~~l~~L~~L~ls~n 231 (362)
+..||+|+..++++|.+....|..+. +.+++|.+++|++... +..+ ...-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 33455555555555555544444332 5566666666655411 1111 122356777777777
Q ss_pred cCCCcc----hhhhcCCCCCcEEEccCCCCCCCCCCC----CcCCCCCCCEEEccCCcCCCC----ChhhhcCCCCCCeE
Q 045704 232 KLSGTI----FSVLFDHPSLQQLTLSYNNFTSLQVPA----NMGLTSKLVALELSYNELGGF----LPAYLASMPNLSAL 299 (362)
Q Consensus 232 ~l~~~~----~~~l~~~~~L~~L~L~~n~l~~~~l~~----~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 299 (362)
++..-. ...+..-..|+++.+..|.|....+.. .+.++++|+.||++.|-++.. ...+++.++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 664321 122333356777777777766421110 123456777777777766532 33455666777777
Q ss_pred eccCCcCccCCChhhhh----------ceeecccccccccCCh------hh-hcCCCCCcEEEecCCCCCCC
Q 045704 300 SLEHNKFIGMIPTQFAL----------KRLLWGGNYLFGPISG------HL-MGMKPGFANVSLVDNCLYMC 354 (362)
Q Consensus 300 ~L~~n~l~~~~~~~~~~----------~~L~l~~N~l~~~~~~------~~-~~~~~~L~~L~L~~N~l~~~ 354 (362)
.+..|-++......+-. ..|-...|.+.+.+.. .. .++ |-|..|.+.+|.|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~-p~L~~le~ngNr~~E~ 318 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAV-PLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhccc-HHHHHHHHccCcchhH
Confidence 77777666544332211 1444445544332211 11 123 5666666777776543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=5.2e-08 Score=93.27 Aligned_cols=175 Identities=24% Similarity=0.247 Sum_probs=119.3
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc---cCCcEEEeeCCccC----------CCCcccccCCCCCCEEEccCCcCCCcc
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP---TSLVELSVRNNNLV----------GNVPENFGDMEFLQVLDLSRNKLSGTI 237 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~---~~L~~L~l~~n~l~----------~~~~~~l~~l~~L~~L~ls~n~l~~~~ 237 (362)
+..+.+|+.|.+.++.+.. ...+. ..|++|. ..|.+. +.+..++. --+|.+.+.++|.+. .+
T Consensus 105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV-LM 179 (1096)
T ss_pred eccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-hH
Confidence 6667889999999988763 11121 4555542 222221 11111111 135778888999887 55
Q ss_pred hhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCCh-hhhh
Q 045704 238 FSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPT-QFAL 316 (362)
Q Consensus 238 ~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 316 (362)
...+.-++.++.|+|+.|+++.+ ..+..+++|++|||++|++...+--....+ +|+.|++++|.++....- .+..
T Consensus 180 D~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhhh
Confidence 66777789999999999999975 378899999999999999987433223333 599999999998854321 2222
Q ss_pred c-eeecccccccccC-ChhhhcCCCCCcEEEecCCCCCCCC
Q 045704 317 K-RLLWGGNYLFGPI-SGHLMGMKPGFANVSLVDNCLYMCP 355 (362)
Q Consensus 317 ~-~L~l~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~l~~~P 355 (362)
. .||++.|-+.+.- -..++.+ ..|..|+|.||++-.=|
T Consensus 256 L~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCccccCH
Confidence 2 8999999887642 2344556 58999999999986544
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=3.2e-06 Score=69.23 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=80.5
Q ss_pred cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEE
Q 045704 197 TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~ 276 (362)
.+...+++++|.+... ..|..++.|.+|.+.+|+|+.+.|..-.-+++|..|.|.+|.+..+.--..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 5667788888887532 45777888999999999998777766666788999999999887654444567788899999
Q ss_pred ccCCcCCCC---ChhhhcCCCCCCeEeccCC
Q 045704 277 LSYNELGGF---LPAYLASMPNLSALSLEHN 304 (362)
Q Consensus 277 L~~n~l~~~---~~~~~~~l~~L~~L~L~~n 304 (362)
+-+|+++.. -...+..+|+|+.||+.+=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999988753 2345677899999988763
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.3e-08 Score=83.97 Aligned_cols=178 Identities=21% Similarity=0.192 Sum_probs=125.2
Q ss_pred CeEEEEEecCCCCcc-cccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCc-CCcc-chhhhcCCCCCcE
Q 045704 68 ARVTEITLDPVGYPG-SLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNS-FKCL-IHASVGSLSQLEE 144 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~-~~~~~~~l~~L~~ 144 (362)
.+++.+||+...++. .+...+..+.+|+.|++.++.+.+.+...+.+..+|+.|+|+.+. ++.- ..-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457788888877753 233456778999999999999998888999999999999999874 3322 1234678999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccC--CCCCCCcc---cCCcEEEeeCCcc-CCCCccccc
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNIT--GKIPPTFP---TSLVELSVRNNNL-VGNVPENFG 218 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l~---~~L~~L~l~~n~l-~~~~~~~l~ 218 (362)
|+++.|.+....+...- ..+ -++|+.|+++++.-. ...-..+. +++.+||++++.. .......|.
T Consensus 265 LNlsWc~l~~~~Vtv~V-------~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAV-------AHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred cCchHhhccchhhhHHH-------hhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 99999887643221111 111 257888888886432 11111222 8899999998764 334456678
Q ss_pred CCCCCCEEEccCCcCCCcchhhh---cCCCCCcEEEccCCC
Q 045704 219 DMEFLQVLDLSRNKLSGTIFSVL---FDHPSLQQLTLSYNN 256 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~~~~~l---~~~~~L~~L~L~~n~ 256 (362)
+++.|++|.++.|.. .+|..+ ...++|.+|++.++-
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 899999999998864 555554 456889999987753
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=5.4e-06 Score=51.25 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=20.3
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCc
Q 045704 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC 130 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 130 (362)
+|++|++++|+|+ .+|..++++++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666665 344445666666666666665554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=5.8e-07 Score=68.95 Aligned_cols=83 Identities=24% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
.|+..++++|.+....+..-..++.++.|++++|.+.. +|..+..++.|+.++++.|.+.. .|..+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence 34444455554443333333333444444444444442 24444444444444444444443 2223333444444444
Q ss_pred cCCcCc
Q 045704 302 EHNKFI 307 (362)
Q Consensus 302 ~~n~l~ 307 (362)
-+|++.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.3e-05 Score=49.54 Aligned_cols=37 Identities=38% Similarity=0.619 Sum_probs=21.2
Q ss_pred CCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCcc
Q 045704 271 KLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 271 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (362)
+|++|++++|+|+. +|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 45666666666664 33445666666666666666654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=9e-05 Score=68.42 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=6.2
Q ss_pred CCCCEEeCCCCcCC
Q 045704 92 LHLPTLDISDNSFS 105 (362)
Q Consensus 92 ~~L~~L~L~~n~i~ 105 (362)
+++++|++++|.++
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 34444444444443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=4e-05 Score=62.93 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=61.0
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCC
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYL 171 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~ 171 (362)
.+...+||++|++. ..+.|..++.|.+|.+.+|+|+.+.|..-.-+++|+.|.|.+|.+.. +.. +..+
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~---------l~d-l~pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE---------LGD-LDPL 109 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh---------hhh-cchh
Confidence 35677888888886 23357778889999999999888877655567788888888887652 111 1125
Q ss_pred CCCCCCCEEeCcccccC
Q 045704 172 GSLKSLSFLDASDNNIT 188 (362)
Q Consensus 172 ~~l~~L~~L~l~~n~~~ 188 (362)
..+|+|++|.+-+|..+
T Consensus 110 a~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ccCCccceeeecCCchh
Confidence 66778888888877765
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=1e-05 Score=62.23 Aligned_cols=84 Identities=24% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhc-CCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCC
Q 045704 90 NLLHLPTLDISDNSFSGSVPDSLS-KLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEF 168 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~ 168 (362)
...+|+..+|++|.+. .+|+.|. ..+.++.|++++|.++.. |..+..++.|+.|+++.|.+. ..
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-------------~~ 115 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-------------AE 115 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-------------cc
Confidence 3345555555555555 3343333 234555556665555544 444555555666655555543 12
Q ss_pred CC-CCCCCCCCEEeCcccccC
Q 045704 169 PY-LGSLKSLSFLDASDNNIT 188 (362)
Q Consensus 169 ~~-~~~l~~L~~L~l~~n~~~ 188 (362)
|. +..+.++-+|+..+|.+.
T Consensus 116 p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 116 PRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hHHHHHHHhHHHhcCCCCccc
Confidence 22 333555555555555544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=2.1e-05 Score=78.26 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCCCEEeCcccccCCCCCCCcc---cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCC-cchhhhcCCCCCcE
Q 045704 174 LKSLSFLDASDNNITGKIPPTFP---TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSG-TIFSVLFDHPSLQQ 249 (362)
Q Consensus 174 l~~L~~L~l~~n~~~~~~~~~l~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~l~~~~~L~~ 249 (362)
+|.|+.|.+.+-.+....-..+. ++|..||+++++++.. ..++.+++|+.|.+.+=.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555555443221101111 4555555555544421 344444555555444433322 11123334455555
Q ss_pred EEccCCC
Q 045704 250 LTLSYNN 256 (362)
Q Consensus 250 L~L~~n~ 256 (362)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00051 Score=63.54 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=80.0
Q ss_pred hhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCccc-ccC
Q 045704 111 SLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDN-NIT 188 (362)
Q Consensus 111 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n-~~~ 188 (362)
.+..+.+++.|++++|.++.. |. + -.+|++|.++++.- + ...|. + .++|++|++++| .+.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~n-----------L-tsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNN-----------L-TTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCC-----------c-ccCCchh--hhhhhheEccCccccc
Confidence 355678999999999988876 42 1 23699999986431 1 12232 2 257888998887 333
Q ss_pred CCCCCCcccCCcEEEeeCCccCCCCcccccCC-CCCCEEEccCCcCC--CcchhhhcCCCCCcEEEccCCCCCCCCCCCC
Q 045704 189 GKIPPTFPTSLVELSVRNNNLVGNVPENFGDM-EFLQVLDLSRNKLS--GTIFSVLFDHPSLQQLTLSYNNFTSLQVPAN 265 (362)
Q Consensus 189 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~ls~n~l~--~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~ 265 (362)
. ++..|+.|++..+.... +..+ ++|++|.+.++... ...+.. -.++|++|++++|.... +|..
T Consensus 109 -s----LP~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~--LP~~ 174 (426)
T PRK15386 109 -G----LPESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII--LPEK 174 (426)
T ss_pred -c----cccccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc--Cccc
Confidence 2 33567888877655431 2222 25667776443211 011111 12578888888877553 2332
Q ss_pred cCCCCCCCEEEccCCc
Q 045704 266 MGLTSKLVALELSYNE 281 (362)
Q Consensus 266 ~~~~~~L~~L~L~~n~ 281 (362)
+ ..+|+.|+++.+.
T Consensus 175 L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 175 L--PESLQSITLHIEQ 188 (426)
T ss_pred c--cccCcEEEecccc
Confidence 2 2578888887653
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=6.7e-05 Score=74.74 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=37.7
Q ss_pred CeEEEEEecCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCc-cchhhhcCCCCCcEE
Q 045704 68 ARVTEITLDPVGYP-GSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC-LIHASVGSLSQLEEL 145 (362)
Q Consensus 68 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L 145 (362)
|.++.|.+.+..+. +.......++|+|+.||+++++++.. ..++.+++|+.|.+.+-.+.. ..-..+.++++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 44555555544432 11222334455555555555555422 345555555555555444432 112234445555555
Q ss_pred EccCCc
Q 045704 146 YLDNND 151 (362)
Q Consensus 146 ~L~~n~ 151 (362)
|+|...
T Consensus 226 DIS~~~ 231 (699)
T KOG3665|consen 226 DISRDK 231 (699)
T ss_pred eccccc
Confidence 555433
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00019 Score=61.40 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=40.4
Q ss_pred cCCCCCCEEEccCC--cCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC---hhhhcC
Q 045704 218 GDMEFLQVLDLSRN--KLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL---PAYLAS 292 (362)
Q Consensus 218 ~~l~~L~~L~ls~n--~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~ 292 (362)
..+++|++|.++.| .+.+.++.....+++|++|++++|++..+.--.....+.+|..|++.+|..+... ...|.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34555666666666 3333333333334666666666666554322223344455666666666544321 123344
Q ss_pred CCCCCeEe
Q 045704 293 MPNLSALS 300 (362)
Q Consensus 293 l~~L~~L~ 300 (362)
+++|++++
T Consensus 142 l~~L~~LD 149 (260)
T KOG2739|consen 142 LPSLKYLD 149 (260)
T ss_pred hhhhcccc
Confidence 45555444
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.08 E-value=0.00017 Score=37.24 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=18.6
Q ss_pred CCcEEEecCCCCCCCCCcccCC
Q 045704 340 GFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 340 ~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
+|++|||++|+|+.+|+.|.+|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5789999999999999987765
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.89 E-value=0.0026 Score=49.32 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=21.5
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEcc
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLD 148 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 148 (362)
|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +......+|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 34444455555442 233223334445545555555443 444434444444445555543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0031 Score=48.94 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=22.5
Q ss_pred hhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccC
Q 045704 110 DSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149 (362)
Q Consensus 110 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 149 (362)
.+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 4577777888888874 56666667777777888888764
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=6.1e-05 Score=64.88 Aligned_cols=99 Identities=28% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEc
Q 045704 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALEL 277 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L 277 (362)
+.++|+..++++... .....++.|+.|.++-|+|+...| +..+++|++|+|..|.|.++.--..+..+++|+.|-|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344555555555421 223345666666666666654332 4455666666666666654432233455566666666
Q ss_pred cCCcCCCCCh-----hhhcCCCCCCeEe
Q 045704 278 SYNELGGFLP-----AYLASMPNLSALS 300 (362)
Q Consensus 278 ~~n~l~~~~~-----~~~~~l~~L~~L~ 300 (362)
..|.-.+.-+ ..+..+|+|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 6665443211 2344455555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0012 Score=56.53 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCCCCCEEeCcCC--cCCccchhhhcCCCCCcEEEccCCcc
Q 045704 114 KLVRRKRLGLSGN--SFKCLIHASVGSLSQLEELYLDNNDF 152 (362)
Q Consensus 114 ~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~l 152 (362)
.+++|++|.++.| ++.+-.+.....+++|++|++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444455444 33332222223334444444444443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.37 E-value=0.0022 Score=30.65 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=11.7
Q ss_pred CCCcEEEecCCCCCCCC
Q 045704 339 PGFANVSLVDNCLYMCP 355 (362)
Q Consensus 339 ~~L~~L~L~~N~l~~~P 355 (362)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999987
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00045 Score=59.67 Aligned_cols=92 Identities=27% Similarity=0.335 Sum_probs=75.1
Q ss_pred CCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh-hhhcCCCCCCe
Q 045704 220 MEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP-AYLASMPNLSA 298 (362)
Q Consensus 220 l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 298 (362)
+.+.++|+.-++.++.+ .....++.|+.|.|+-|+|+.+ ..+..+++|+.|+|..|.|.+... ..+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55678888888888744 3456789999999999999975 356788999999999999987432 45788999999
Q ss_pred EeccCCcCccCCChhhhh
Q 045704 299 LSLEHNKFIGMIPTQFAL 316 (362)
Q Consensus 299 L~L~~n~l~~~~~~~~~~ 316 (362)
|.|..|+-.+..+..+..
T Consensus 93 LWL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRR 110 (388)
T ss_pred HhhccCCcccccchhHHH
Confidence 999999998887776544
No 69
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.10 E-value=0.009 Score=36.56 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=18.9
Q ss_pred cCCCC-CCCCCCCCCCCC--CCCCCCCCCCCcccceecC
Q 045704 26 FGTTV-APGSCLSLWDFS--VDPGDHLFSDRFTCGLRCD 61 (362)
Q Consensus 26 ~~~~~-~~~~~l~~w~~~--~~~c~~~~~~~~~~g~~c~ 61 (362)
+..+. ++...+.+|+.+ .++|.| .||+|+
T Consensus 12 k~~l~~~~~~~l~~W~~~~~~~~C~W-------~GV~Cd 43 (43)
T PF08263_consen 12 KKSLNNDPSGVLSSWNPSSDSDPCSW-------SGVTCD 43 (43)
T ss_dssp HHCTT-SC-CCCTT--TT--S-CCCS-------TTEEE-
T ss_pred HHhcccccCcccccCCCcCCCCCeee-------ccEEeC
Confidence 34444 467889999987 799999 999995
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.60 E-value=0.00098 Score=60.73 Aligned_cols=134 Identities=20% Similarity=0.118 Sum_probs=78.4
Q ss_pred CCCCCEEeCccccc-CCCCCCCcc---cCCcEEEeeCCccC-CCCcccc-cCCCCCCEEEccCCcCCC--cchhhhcCCC
Q 045704 174 LKSLSFLDASDNNI-TGKIPPTFP---TSLVELSVRNNNLV-GNVPENF-GDMEFLQVLDLSRNKLSG--TIFSVLFDHP 245 (362)
Q Consensus 174 l~~L~~L~l~~n~~-~~~~~~~l~---~~L~~L~l~~n~l~-~~~~~~l-~~l~~L~~L~ls~n~l~~--~~~~~l~~~~ 245 (362)
+..|+.+..+++.. ++..-..+. .+|+.+.+..++-- ..-...+ .+.+.|+.+++.++.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45566666665532 111111222 78888888887732 1111222 356788888888775432 1222234678
Q ss_pred CCcEEEccCCCCCCCC----CCCCcCCCCCCCEEEccCCcCCC-CChhhhcCCCCCCeEeccCCcCc
Q 045704 246 SLQQLTLSYNNFTSLQ----VPANMGLTSKLVALELSYNELGG-FLPAYLASMPNLSALSLEHNKFI 307 (362)
Q Consensus 246 ~L~~L~L~~n~l~~~~----l~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 307 (362)
.|+.|.++.+....-. +......+..++.+.+++++... ..-..+..+++|+.+++-+++-.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 8999999877543211 11222345678888999887543 33344667788999988887643
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.01 Score=30.41 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=6.3
Q ss_pred CCEEeCcCCcCC
Q 045704 118 RKRLGLSGNSFK 129 (362)
Q Consensus 118 L~~L~L~~n~~~ 129 (362)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.55 E-value=0.024 Score=30.30 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCCcEEEecCCCCCCCCCcccC
Q 045704 339 PGFANVSLVDNCLYMCPEMFFF 360 (362)
Q Consensus 339 ~~L~~L~L~~N~l~~~P~~~~~ 360 (362)
++|++|+|++|+|+.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5899999999999999998764
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.55 E-value=0.024 Score=30.30 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCCcEEEecCCCCCCCCCcccC
Q 045704 339 PGFANVSLVDNCLYMCPEMFFF 360 (362)
Q Consensus 339 ~~L~~L~L~~N~l~~~P~~~~~ 360 (362)
++|++|+|++|+|+.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5899999999999999998764
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=93.82 E-value=0.038 Score=29.42 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCCCCCc
Q 045704 339 PGFANVSLVDNCLYMCPEM 357 (362)
Q Consensus 339 ~~L~~L~L~~N~l~~~P~~ 357 (362)
++|++|++++|+++++|+-
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 5789999999999999983
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.04 E-value=0.00074 Score=64.53 Aligned_cols=182 Identities=27% Similarity=0.231 Sum_probs=109.2
Q ss_pred CCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc-------cCCcEEEeeCCccCCC-
Q 045704 141 QLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP-------TSLVELSVRNNNLVGN- 212 (362)
Q Consensus 141 ~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-------~~L~~L~l~~n~l~~~- 212 (362)
.+..|.|.+|.+...... ..-..+...+.|+.|++++|.+.+.....+. ..+++|++..|.++..
T Consensus 88 ~l~~L~L~~~~l~~~~~~-------~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAE-------ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred hHHHhhhhhCccccchHH-------HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 377888888876532110 0111166778899999999988743322222 4566677777777643
Q ss_pred ---CcccccCCCCCCEEEccCCcCCC----cchhhhc----CCCCCcEEEccCCCCCCCCC---CCCcCCCCC-CCEEEc
Q 045704 213 ---VPENFGDMEFLQVLDLSRNKLSG----TIFSVLF----DHPSLQQLTLSYNNFTSLQV---PANMGLTSK-LVALEL 277 (362)
Q Consensus 213 ---~~~~l~~l~~L~~L~ls~n~l~~----~~~~~l~----~~~~L~~L~L~~n~l~~~~l---~~~~~~~~~-L~~L~L 277 (362)
+...+.....++.++++.|.+.. ..+..+. ...+++.|.+.++.++.... ...+...+. +..+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 34455667788888888887742 1223333 36678888888887764210 112223333 566888
Q ss_pred cCCcCCCC----ChhhhcCC-CCCCeEeccCCcCccCCChhhhhc--------eeeccccccccc
Q 045704 278 SYNELGGF----LPAYLASM-PNLSALSLEHNKFIGMIPTQFALK--------RLLWGGNYLFGP 329 (362)
Q Consensus 278 ~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~--------~L~l~~N~l~~~ 329 (362)
..|.+.+. ....+..+ +.++.+++..|.++.......... .+.+++|.+...
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 88877653 12333444 567788888888876655544332 677777777543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.79 E-value=0.00094 Score=63.84 Aligned_cols=186 Identities=25% Similarity=0.234 Sum_probs=109.2
Q ss_pred EEEEEecCCCCccc----ccccccCCCCCCEEeCCCCcCCCCCch----hhcCC-CCCCEEeCcCCcCCcc----chhhh
Q 045704 70 VTEITLDPVGYPGS----LISSKWNLLHLPTLDISDNSFSGSVPD----SLSKL-VRRKRLGLSGNSFKCL----IHASV 136 (362)
Q Consensus 70 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l-~~L~~L~L~~n~~~~~----~~~~~ 136 (362)
+..+.+.+|.+... +-..+...+.|+.|+++.|.+.+.-.. .+... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566777776533 223455667888888888888743222 22332 5567777777777643 33455
Q ss_pred cCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc-------cCCcEEEeeCCc
Q 045704 137 GSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP-------TSLVELSVRNNN 208 (362)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~-------~~L~~L~l~~n~ 208 (362)
.....++.++++.|.+... +...+....+. +....++++|++.++.++......+. ..+..+++..|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~----g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIEL----GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchh----hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 5667788888887776421 01111111111 33466788888888876632222111 225567787777
Q ss_pred cCCC----CcccccCC-CCCCEEEccCCcCCCcc----hhhhcCCCCCcEEEccCCCCCC
Q 045704 209 LVGN----VPENFGDM-EFLQVLDLSRNKLSGTI----FSVLFDHPSLQQLTLSYNNFTS 259 (362)
Q Consensus 209 l~~~----~~~~l~~l-~~L~~L~ls~n~l~~~~----~~~l~~~~~L~~L~L~~n~l~~ 259 (362)
+... ....+..+ ..++.++++.|.++... ...+..+++++.+.+++|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7633 22233444 56788888888876543 3444556778888888887764
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.71 E-value=0.015 Score=56.03 Aligned_cols=60 Identities=25% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCCCEEeCcccc-cCCCCCCCcc---cCCcEEEeeCCc-cCCC-CcccccCCCCCCEEEccCCcC
Q 045704 174 LKSLSFLDASDNN-ITGKIPPTFP---TSLVELSVRNNN-LVGN-VPENFGDMEFLQVLDLSRNKL 233 (362)
Q Consensus 174 l~~L~~L~l~~n~-~~~~~~~~l~---~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~ls~n~l 233 (362)
+.+|+.++++.+. +++..-..+. ++|+.|.+.++. ++.. +......++.|++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555555554 3322222222 455555544444 2211 111223455566666665543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=0.023 Score=47.10 Aligned_cols=83 Identities=23% Similarity=0.181 Sum_probs=55.2
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC-CCCCCCCCcCCCCCCCEEEccCC-cCCCCChhhhcCCCCCCeE
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF-TSLQVPANMGLTSKLVALELSYN-ELGGFLPAYLASMPNLSAL 299 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l-~~~~l~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 299 (362)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.- .++.+...-+..++|+.|++++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467777777777766667777777777777777642 22222222234568888888877 5776666777778888888
Q ss_pred eccCC
Q 045704 300 SLEHN 304 (362)
Q Consensus 300 ~L~~n 304 (362)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77663
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.70 E-value=0.2 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=11.0
Q ss_pred CCCCEEeCcCCcCCccchhhh
Q 045704 116 VRRKRLGLSGNSFKCLIHASV 136 (362)
Q Consensus 116 ~~L~~L~L~~n~~~~~~~~~~ 136 (362)
++|++|+|++|.++.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455555555555555544433
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.70 E-value=0.2 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=11.0
Q ss_pred CCCCEEeCcCCcCCccchhhh
Q 045704 116 VRRKRLGLSGNSFKCLIHASV 136 (362)
Q Consensus 116 ~~L~~L~L~~n~~~~~~~~~~ 136 (362)
++|++|+|++|.++.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455555555555555544433
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.68 E-value=0.0038 Score=52.74 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
...+++.||++.+.+. .+-..|.-++.+.+|+++.|.+. ..|..+.++..++.+++..|..+.. |.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhC-CccccccCCcchh
Confidence 4678888998888765 23445666778888999999887 7888888888888999888887765 7888889999998
Q ss_pred EccCCccc
Q 045704 146 YLDNNDFQ 153 (362)
Q Consensus 146 ~L~~n~l~ 153 (362)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888764
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.83 E-value=0.092 Score=43.60 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCC-Cchhhc-CCCCCCEEeCcCCc-CCccchhhhcCCCCCc
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGS-VPDSLS-KLVRRKRLGLSGNS-FKCLIHASVGSLSQLE 143 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~-~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~ 143 (362)
.-.|+.++-+++.+...--+.+.+++.++.|.+.++.--+. --+.+. -.++|+.|+|++|. |+...-..+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34577777777777666566677777777777776654311 112222 24677788887663 5544445566677777
Q ss_pred EEEcc
Q 045704 144 ELYLD 148 (362)
Q Consensus 144 ~L~L~ 148 (362)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 77665
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.22 E-value=0.18 Score=26.21 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=7.6
Q ss_pred CCCCeEeccCCcCccC
Q 045704 294 PNLSALSLEHNKFIGM 309 (362)
Q Consensus 294 ~~L~~L~L~~n~l~~~ 309 (362)
++|+.|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555556665555543
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=87.21 E-value=0.19 Score=48.26 Aligned_cols=131 Identities=26% Similarity=0.170 Sum_probs=73.6
Q ss_pred CCCCCCEEeCcccccCCCC---CCCcc-cCCcEEEeeCC-ccCCCCc----ccccCCCCCCEEEccCCc-CCCcchhhhc
Q 045704 173 SLKSLSFLDASDNNITGKI---PPTFP-TSLVELSVRNN-NLVGNVP----ENFGDMEFLQVLDLSRNK-LSGTIFSVLF 242 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~---~~~l~-~~L~~L~l~~n-~l~~~~~----~~l~~l~~L~~L~ls~n~-l~~~~~~~l~ 242 (362)
..+.|+.+.+.++...... +.... +.|+.|+++++ ......+ .....+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3567777777766432111 11111 78888888763 2111111 223445778888888777 5544444444
Q ss_pred C-CCCCcEEEccCCC-CCCCCCCCCcCCCCCCCEEEccCCcCCC--CChhhhcCCCCCCeEeccC
Q 045704 243 D-HPSLQQLTLSYNN-FTSLQVPANMGLTSKLVALELSYNELGG--FLPAYLASMPNLSALSLEH 303 (362)
Q Consensus 243 ~-~~~L~~L~L~~n~-l~~~~l~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~ 303 (362)
. +++|+.|.+.++. +++..+-.....++.|++|+++++.... ........+++++.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 3 6788888877766 5554444445566778888888776532 1233344456655555433
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.58 E-value=1.9 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.2
Q ss_pred CCCcEEEecCCCCC
Q 045704 339 PGFANVSLVDNCLY 352 (362)
Q Consensus 339 ~~L~~L~L~~N~l~ 352 (362)
++|++|+|++|.|+
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 47899999999986
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.27 E-value=0.043 Score=46.55 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=45.3
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCC
Q 045704 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLS 297 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 297 (362)
......+.||++.|++- -....+..++.+..|+++.|.+.. +|...+....+..+++..|.... .|..+...++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhh-CCccccccCCcc
Confidence 34445555565555543 111223334455556666666553 25555555555566666665554 455566666666
Q ss_pred eEeccCCcC
Q 045704 298 ALSLEHNKF 306 (362)
Q Consensus 298 ~L~L~~n~l 306 (362)
++++.+|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 666666654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.35 E-value=3 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=5.5
Q ss_pred CCCEEeCcCCcC
Q 045704 117 RRKRLGLSGNSF 128 (362)
Q Consensus 117 ~L~~L~L~~n~~ 128 (362)
+|+.|+++.|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444444
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.18 E-value=13 Score=35.41 Aligned_cols=110 Identities=24% Similarity=0.142 Sum_probs=51.3
Q ss_pred cCCcEEEeeCCccCCCCcccc--cCCCCCCEEEccCCcCCCc-chhhh--------cCCCCCcEEEccCCCCCCCCCCC-
Q 045704 197 TSLVELSVRNNNLVGNVPENF--GDMEFLQVLDLSRNKLSGT-IFSVL--------FDHPSLQQLTLSYNNFTSLQVPA- 264 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~-~~~~l--------~~~~~L~~L~L~~n~l~~~~l~~- 264 (362)
..+++|...+|.+.++..... ..-+..+.+++..-.-..+ .+... ....-+..+.++.+.... ....
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~ 432 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESA 432 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHH
Confidence 446667777766655443322 2234455555543221000 00000 011234556666665543 1111
Q ss_pred --CcCCCCCCCEEEccCCcCCCC----ChhhhcCCCCCCeEeccCCcCc
Q 045704 265 --NMGLTSKLVALELSYNELGGF----LPAYLASMPNLSALSLEHNKFI 307 (362)
Q Consensus 265 --~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 307 (362)
.....+.+..|++++|..... +|.......+++.+..+.|...
T Consensus 433 in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 433 INKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 123345677777777765432 3444444556666666666544
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.66 E-value=1.4 Score=40.90 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=90.5
Q ss_pred CCCCCEEeCcCCcC-Cccc-hhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCC-C-CCCCCCCCEEeCcccc-cCC
Q 045704 115 LVRRKRLGLSGNSF-KCLI-HASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFP-Y-LGSLKSLSFLDASDNN-ITG 189 (362)
Q Consensus 115 l~~L~~L~L~~n~~-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~-~-~~~l~~L~~L~l~~n~-~~~ 189 (362)
+..+.++++..|.. +... ...=..+..|+.|+.+++.-. ....- . -.+.++|+.+.+.+++ ++.
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-----------~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-----------TDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC-----------chHHHHHHhcCCCceEEEeccccchhhh
Confidence 34456666555532 2211 111134567777777654321 00000 1 3345677777777765 232
Q ss_pred CCCCCcc---cCCcEEEeeCCccC--CCCcccccCCCCCCEEEccCCcCCCcc-----hhhhcCCCCCcEEEccCCCCCC
Q 045704 190 KIPPTFP---TSLVELSVRNNNLV--GNVPENFGDMEFLQVLDLSRNKLSGTI-----FSVLFDHPSLQQLTLSYNNFTS 259 (362)
Q Consensus 190 ~~~~~l~---~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~~~~-----~~~l~~~~~L~~L~L~~n~l~~ 259 (362)
.....+. ..|+.+++..+... +.+.+.-.+++.|+.|.++.+..-... ...-.....++.+.++++....
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 2222222 66777777766543 123333345677888888766542111 1112345677788888876554
Q ss_pred CCCCCCcCCCCCCCEEEccCCcC-CC-CChhhhcCCCCCCeEec
Q 045704 260 LQVPANMGLTSKLVALELSYNEL-GG-FLPAYLASMPNLSALSL 301 (362)
Q Consensus 260 ~~l~~~~~~~~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L 301 (362)
-..-..+..+++|+.+++-.++- +. .+...-..+|+++...+
T Consensus 416 d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 416 DATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 33334556667777777776642 22 22333345666665444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.31 E-value=5.8 Score=38.27 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCCCCCEEeCCCCcCCCC--CchhhcCCCCCCEEeCcCC--cCCccchhhhcC--CCCCcEEEccCCcccC
Q 045704 90 NLLHLPTLDISDNSFSGS--VPDSLSKLVRRKRLGLSGN--SFKCLIHASVGS--LSQLEELYLDNNDFQG 154 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~--l~~L~~L~L~~n~l~~ 154 (362)
+.+.+..+.|++|++... +..--..-|+|+.|+|++| .+... ..+.+ ...|++|.+.+|++-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 455666667777766522 1111123466777777776 22211 12222 2346667777666543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.96 E-value=22 Score=33.87 Aligned_cols=174 Identities=24% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccc---cCCCCCCEEEccCCcCCCcchhhhc---CCCCCc
Q 045704 175 KSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENF---GDMEFLQVLDLSRNKLSGTIFSVLF---DHPSLQ 248 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~ls~n~l~~~~~~~l~---~~~~L~ 248 (362)
+.+++++++.|.+.+..|-.+....--+.++.++.+...-..+ ..-..+.+++++.|.....+|..+. ....++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence 4566667777766666665555322335555555442110000 0112366677777666555544332 123345
Q ss_pred EEEccCCCCCC--CCCCCCcCCCCCCCEEEccCCcCCC----CCh----hhhcCCCCCCeEeccCCcCccCCChhhhhc-
Q 045704 249 QLTLSYNNFTS--LQVPANMGLTSKLVALELSYNELGG----FLP----AYLASMPNLSALSLEHNKFIGMIPTQFALK- 317 (362)
Q Consensus 249 ~L~L~~n~l~~--~~l~~~~~~~~~L~~L~L~~n~l~~----~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~- 317 (362)
.++.+...+.- ..-+-..+..+++...+++.|.... ..+ ..+..-+++ +|++.+++...+-+...-..
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgl 323 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGL 323 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhccc
Confidence 55555544321 0112233444556666666554321 111 122333455 55665555444333222110
Q ss_pred ---------eeeccccccccc--CChhhhcCCCCCcEEEecCCCC
Q 045704 318 ---------RLLWGGNYLFGP--ISGHLMGMKPGFANVSLVDNCL 351 (362)
Q Consensus 318 ---------~L~l~~N~l~~~--~~~~~~~~~~~L~~L~L~~N~l 351 (362)
++++..|...+. ...++... .+++|.+.+|++
T Consensus 324 a~ne~t~g~rldl~~cp~~~a~vleaci~g~--R~q~l~~rdnnl 366 (553)
T KOG4242|consen 324 AENEATLGARLDLRRCPLERAEVLEACIFGQ--RVQVLLQRDNNL 366 (553)
T ss_pred ccccccccccCChhhccccccchhhccccce--eeeEeecccccc
Confidence 566665544332 12222222 366666666665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.05 E-value=9.1 Score=37.01 Aligned_cols=64 Identities=28% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCCCCCEEEccCCcCCCc--chhhhcCCCCCcEEEccCC--CCCCC-CCCCCcCCCCCCCEEEccCCcCCC
Q 045704 219 DMEFLQVLDLSRNKLSGT--IFSVLFDHPSLQQLTLSYN--NFTSL-QVPANMGLTSKLVALELSYNELGG 284 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~--~~~~l~~~~~L~~L~L~~n--~l~~~-~l~~~~~~~~~L~~L~L~~n~l~~ 284 (362)
+.+.+..+.+++|++... +...-...++|+.|+|++| .+... +++ -++. ..|+.|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcC-CCHHHeeecCCcccc
Confidence 456677777888877532 1222234577788888887 33321 111 1122 347777777777765
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.08 E-value=18 Score=18.92 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=7.7
Q ss_pred CCCCEEeCcCCc
Q 045704 116 VRRKRLGLSGNS 127 (362)
Q Consensus 116 ~~L~~L~L~~n~ 127 (362)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 566667776664
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.28 E-value=31 Score=40.30 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=15.5
Q ss_pred ccCCcCCCCChhhhcCCCCCCeEeccCCcCcc
Q 045704 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 277 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (362)
|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 44444444444444444555555555554443
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.68 E-value=33 Score=40.02 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=25.3
Q ss_pred eCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCcc
Q 045704 98 DISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCL 131 (362)
Q Consensus 98 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~ 131 (362)
||++|+|+...+..|..+++|++|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5778888855556777788888888888877643
No 96
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=30.80 E-value=80 Score=18.94 Aligned_cols=29 Identities=31% Similarity=0.226 Sum_probs=11.6
Q ss_pred CCCEEeCcccccCCCCCCCcccCCcEEEe
Q 045704 176 SLSFLDASDNNITGKIPPTFPTSLVELSV 204 (362)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l~~~L~~L~l 204 (362)
++++|.+..+--....+..++.++++|.+
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEe
Confidence 44555553222221223333345555544
Done!