Query 045704
Match_columns 362
No_of_seqs 296 out of 3809
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 07:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-38 3.4E-43 322.6 21.1 318 25-357 20-387 (768)
2 4eco_A Uncharacterized protein 100.0 2.1E-37 7.2E-42 306.5 25.3 315 32-361 53-535 (636)
3 1ogq_A PGIP-2, polygalacturona 100.0 5.2E-38 1.8E-42 284.6 13.9 268 35-325 23-302 (313)
4 3rgz_A Protein brassinosteroid 100.0 6.4E-37 2.2E-41 309.4 20.1 289 67-357 317-723 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 3.5E-36 1.2E-40 304.0 19.4 294 56-361 315-775 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 1.5E-34 5.1E-39 275.2 22.6 284 67-352 29-408 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 3.7E-33 1.3E-37 267.2 24.9 276 67-356 31-313 (477)
8 4eco_A Uncharacterized protein 100.0 2.3E-33 7.8E-38 277.5 21.8 287 66-359 247-586 (636)
9 3v47_A TOLL-like receptor 5B a 100.0 2.8E-33 9.5E-38 266.4 20.3 264 67-331 78-412 (455)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-32 4E-37 271.4 23.6 142 218-361 396-543 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1.3E-32 4.4E-37 271.1 23.5 283 69-353 255-561 (606)
12 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-33 2.8E-37 267.6 20.2 289 65-360 42-466 (520)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-32 1E-36 266.2 23.1 142 218-361 350-496 (562)
14 3t6q_A CD180 antigen; protein- 100.0 1.7E-31 5.9E-36 263.0 26.9 153 197-352 278-438 (606)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-31 4E-36 271.0 25.1 287 66-359 489-826 (876)
16 2id5_A Lingo-1, leucine rich r 100.0 4.3E-32 1.5E-36 259.8 20.1 276 64-354 52-335 (477)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-31 7.8E-36 259.1 25.0 122 68-189 26-162 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-31 2.7E-35 253.8 26.2 278 64-353 65-482 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-31 1.1E-35 270.3 24.6 288 66-355 22-378 (844)
20 3oja_B Anopheles plasmodium-re 100.0 4.9E-31 1.7E-35 259.2 23.1 275 67-355 50-340 (597)
21 3o6n_A APL1; leucine-rich repe 100.0 6.6E-31 2.3E-35 245.2 22.5 275 67-355 44-334 (390)
22 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-32 9.9E-37 246.8 11.9 248 92-356 50-309 (313)
23 1xku_A Decorin; proteoglycan, 100.0 2.1E-30 7.1E-35 236.4 24.1 262 68-350 52-330 (330)
24 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-31 2E-35 259.3 21.5 156 197-353 399-559 (606)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-30 7.2E-35 253.1 25.3 280 66-353 74-511 (562)
26 3j0a_A TOLL-like receptor 5; m 100.0 2E-30 6.9E-35 264.4 26.1 293 64-358 69-523 (844)
27 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4.3E-35 238.1 21.9 271 71-350 36-331 (332)
28 2z63_A TOLL-like receptor 4, v 100.0 5.2E-31 1.8E-35 257.6 20.7 115 241-356 392-511 (570)
29 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-30 1.1E-34 257.3 26.2 283 70-353 250-623 (680)
30 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-29 4.1E-34 253.2 26.7 290 68-358 222-579 (680)
31 4fmz_A Internalin; leucine ric 100.0 4.6E-29 1.6E-33 229.0 27.7 260 67-356 65-328 (347)
32 4fmz_A Internalin; leucine ric 100.0 3.1E-29 1E-33 230.2 25.0 260 64-353 84-347 (347)
33 4fcg_A Uncharacterized protein 100.0 1.6E-30 5.5E-35 236.8 16.3 252 32-308 43-315 (328)
34 1o6v_A Internalin A; bacterial 100.0 9.2E-29 3.2E-33 236.0 27.2 269 67-354 67-368 (466)
35 2z63_A TOLL-like receptor 4, v 100.0 7.3E-30 2.5E-34 249.5 19.7 138 217-356 392-536 (570)
36 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.3E-33 224.0 25.0 246 64-325 72-330 (330)
37 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4.2E-33 220.0 22.3 260 57-337 5-271 (285)
38 1o6v_A Internalin A; bacterial 100.0 1.7E-28 5.9E-33 234.2 24.2 274 64-358 86-394 (466)
39 4g8a_A TOLL-like receptor 4; l 100.0 9E-29 3.1E-33 244.4 22.6 156 198-353 421-581 (635)
40 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-29 1.9E-33 242.2 20.5 181 76-259 13-210 (549)
41 3o6n_A APL1; leucine-rich repe 100.0 2E-28 6.8E-33 228.4 22.8 270 67-352 68-352 (390)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-28 9.1E-33 222.7 22.1 252 67-325 53-331 (332)
43 3bz5_A Internalin-J, INLJ; leu 100.0 8.8E-28 3E-32 228.2 25.3 264 66-356 62-356 (457)
44 2z80_A TOLL-like receptor 2, v 100.0 6.7E-29 2.3E-33 228.5 15.8 253 67-331 51-318 (353)
45 3oja_B Anopheles plasmodium-re 100.0 3E-28 1E-32 239.5 21.2 270 66-352 73-358 (597)
46 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-27 5E-32 235.7 26.1 291 67-359 51-563 (635)
47 2z66_A Variable lymphocyte rec 100.0 2.5E-28 8.5E-33 220.3 18.3 268 56-337 10-297 (306)
48 2z66_A Variable lymphocyte rec 100.0 4.7E-28 1.6E-32 218.4 18.1 243 71-329 10-263 (306)
49 3zyi_A Leucine-rich repeat-con 100.0 2.4E-27 8E-32 225.4 22.8 230 67-311 74-307 (452)
50 3zyj_A Leucine-rich repeat-con 100.0 4.1E-27 1.4E-31 223.0 23.7 229 67-310 63-295 (440)
51 4fcg_A Uncharacterized protein 100.0 6.8E-28 2.3E-32 219.5 17.6 235 90-356 79-318 (328)
52 2z80_A TOLL-like receptor 2, v 100.0 4.8E-28 1.6E-32 222.8 16.0 262 76-356 39-318 (353)
53 3bz5_A Internalin-J, INLJ; leu 100.0 7.7E-27 2.6E-31 221.7 24.4 272 67-361 41-338 (457)
54 3zyi_A Leucine-rich repeat-con 99.9 1.3E-26 4.3E-31 220.4 22.6 239 71-327 57-303 (452)
55 1jl5_A Outer protein YOPM; leu 99.9 2.4E-26 8.2E-31 218.2 23.9 265 68-361 131-421 (454)
56 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 6E-31 218.7 21.4 239 71-327 46-292 (440)
57 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-26 5.5E-31 226.3 21.5 279 34-353 10-298 (622)
58 1jl5_A Outer protein YOPM; leu 99.9 1.2E-25 4.3E-30 213.2 27.0 264 67-360 90-381 (454)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1E-28 3.5E-33 224.0 5.1 256 68-348 10-271 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.5E-31 207.5 16.5 237 66-316 30-270 (285)
61 2o6q_A Variable lymphocyte rec 99.9 1.6E-25 5.4E-30 198.3 22.2 220 43-311 2-222 (270)
62 1wwl_A Monocyte differentiatio 99.9 4.7E-28 1.6E-32 219.1 3.4 245 88-353 39-310 (312)
63 3oja_A Leucine-rich immune mol 99.9 3.4E-27 1.1E-31 226.1 9.2 235 88-347 30-270 (487)
64 1wwl_A Monocyte differentiatio 99.9 1.8E-27 6.2E-32 215.2 5.4 241 67-329 42-311 (312)
65 2z62_A TOLL-like receptor 4, v 99.9 5.4E-25 1.8E-29 195.4 20.5 206 92-311 28-241 (276)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5E-27 1.7E-31 212.8 6.5 244 93-359 11-259 (317)
67 1z7x_W Ribonuclease inhibitor; 99.9 2.9E-28 1E-32 232.1 -3.8 285 68-353 28-412 (461)
68 2z62_A TOLL-like receptor 4, v 99.9 3.6E-24 1.2E-28 190.1 18.4 218 97-352 12-237 (276)
69 3oja_A Leucine-rich immune mol 99.9 4E-25 1.4E-29 211.7 12.7 224 66-315 32-259 (487)
70 2o6q_A Variable lymphocyte rec 99.9 2.9E-23 9.9E-28 183.7 23.6 200 92-329 16-220 (270)
71 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.6E-28 187.1 21.6 201 90-309 8-210 (290)
72 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-27 1.5E-31 224.0 -2.3 284 69-352 86-440 (461)
73 3rfs_A Internalin B, repeat mo 99.9 2.8E-24 9.6E-29 190.4 15.9 208 88-337 37-245 (272)
74 3g06_A SSPH2 (leucine-rich rep 99.9 3E-22 1E-26 196.1 26.8 236 92-362 40-284 (622)
75 1p9a_G Platelet glycoprotein I 99.9 1.5E-22 5E-27 181.0 21.7 199 67-284 9-209 (290)
76 3rfs_A Internalin B, repeat mo 99.9 4.5E-23 1.5E-27 182.6 17.2 175 67-257 40-217 (272)
77 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.6E-27 175.7 18.0 186 56-285 8-194 (251)
78 3goz_A Leucine-rich repeat-con 99.9 3.8E-24 1.3E-28 197.4 5.4 79 74-152 4-92 (362)
79 1h6u_A Internalin H; cell adhe 99.9 2.4E-22 8.4E-27 181.1 17.1 192 90-309 39-232 (308)
80 4glp_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 186.3 11.0 220 93-328 65-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 2.6E-22 8.7E-27 174.3 15.3 193 93-304 32-236 (239)
82 2ast_B S-phase kinase-associat 99.9 4.7E-24 1.6E-28 194.6 3.3 258 56-336 40-315 (336)
83 2ca6_A RAN GTPase-activating p 99.9 2E-24 7E-29 201.0 0.7 217 84-308 24-288 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 3.2E-22 1.1E-26 173.7 14.3 197 67-281 30-237 (239)
85 3goz_A Leucine-rich repeat-con 99.9 5.9E-24 2E-28 196.1 2.9 243 67-316 21-306 (362)
86 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.3E-27 182.7 9.8 224 67-309 63-309 (310)
87 3m19_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 168.3 18.1 154 175-329 35-194 (251)
88 2ca6_A RAN GTPase-activating p 99.9 6.3E-24 2.2E-28 197.7 -0.7 237 67-311 31-320 (386)
89 1h6u_A Internalin H; cell adhe 99.9 7.1E-21 2.4E-25 171.5 18.1 191 67-285 40-232 (308)
90 3cvr_A Invasion plasmid antige 99.9 4.3E-21 1.5E-25 185.8 14.6 161 35-234 32-193 (571)
91 2ast_B S-phase kinase-associat 99.9 8.5E-23 2.9E-27 186.3 2.2 233 68-316 70-315 (336)
92 4ay9_X Follicle-stimulating ho 99.8 2.2E-20 7.5E-25 171.4 15.7 220 72-311 13-240 (350)
93 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.1E-24 152.5 15.8 161 91-293 27-188 (208)
94 3cvr_A Invasion plasmid antige 99.8 3.8E-19 1.3E-23 172.2 19.2 186 93-316 60-252 (571)
95 4ay9_X Follicle-stimulating ho 99.8 2E-19 6.9E-24 165.0 16.2 220 67-304 29-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 149.7 16.6 159 176-338 29-189 (208)
97 1h6t_A Internalin B; cell adhe 99.8 1.9E-19 6.5E-24 160.8 12.3 171 88-284 42-214 (291)
98 1m9s_A Internalin B; cell inva 99.8 8.4E-19 2.9E-23 171.4 16.1 186 73-286 26-213 (605)
99 3ogk_B Coronatine-insensitive 99.8 9.4E-21 3.2E-25 185.8 0.3 284 67-353 163-527 (592)
100 3e6j_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 145.2 17.8 161 37-235 10-173 (229)
101 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.1E-23 159.8 13.0 151 176-327 40-202 (361)
102 1h6t_A Internalin B; cell adhe 99.8 5.3E-18 1.8E-22 151.4 15.6 169 67-260 45-215 (291)
103 2v9t_B SLIT homolog 2 protein 99.8 9.9E-18 3.4E-22 143.4 16.6 150 72-258 15-165 (220)
104 3ogk_B Coronatine-insensitive 99.8 9E-20 3.1E-24 178.8 3.8 283 68-352 138-501 (592)
105 2v9t_B SLIT homolog 2 protein 99.8 9E-18 3.1E-22 143.7 15.1 136 175-311 32-169 (220)
106 2xot_A Amphoterin-induced prot 99.8 9.6E-18 3.3E-22 154.4 15.1 172 72-258 22-202 (361)
107 3e6j_A Variable lymphocyte rec 99.8 2.7E-17 9.3E-22 141.6 16.9 135 175-311 40-176 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-17 8.1E-22 141.0 16.0 136 176-312 33-171 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-17 4.6E-22 142.6 14.3 152 178-331 14-170 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.4E-22 162.4 14.9 193 92-312 21-215 (605)
111 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.1E-22 139.8 11.9 154 113-308 41-195 (197)
112 1xeu_A Internalin C; cellular 99.7 6.6E-18 2.2E-22 148.5 9.1 167 70-285 21-187 (263)
113 1w8a_A SLIT protein; signaling 99.7 4.1E-17 1.4E-21 136.5 13.3 170 178-353 11-184 (192)
114 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 139.9 10.4 155 88-284 40-195 (197)
115 2p1m_B Transport inhibitor res 99.7 1.6E-19 5.4E-24 177.1 -2.2 81 269-351 431-518 (594)
116 1dce_A Protein (RAB geranylger 99.7 1.4E-20 4.7E-25 182.9 -10.1 190 89-311 346-550 (567)
117 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.9E-22 146.4 10.0 145 66-234 39-185 (263)
118 2p1m_B Transport inhibitor res 99.7 2.3E-19 7.8E-24 175.9 -2.3 283 67-352 129-494 (594)
119 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.4E-22 166.8 5.3 222 56-307 166-404 (727)
120 2ell_A Acidic leucine-rich nuc 99.7 4.2E-16 1.4E-20 127.3 12.4 134 175-310 24-163 (168)
121 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6.3E-22 165.7 5.1 174 171-352 220-404 (727)
122 2wfh_A SLIT homolog 2 protein 99.7 1.5E-15 5.1E-20 127.0 14.1 131 178-311 13-143 (193)
123 2o6r_A Variable lymphocyte rec 99.7 2E-15 6.9E-20 124.4 14.1 134 177-312 9-142 (177)
124 2ell_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 126.0 10.7 141 197-358 24-166 (168)
125 1dce_A Protein (RAB geranylger 99.6 1.6E-18 5.5E-23 168.4 -8.6 201 67-301 348-567 (567)
126 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.3E-20 123.5 7.8 127 175-303 17-149 (149)
127 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.6E-20 137.6 10.0 229 68-314 25-317 (329)
128 1w8a_A SLIT protein; signaling 99.6 1.7E-14 5.7E-19 120.6 12.9 104 71-189 11-116 (192)
129 2je0_A Acidic leucine-rich nuc 99.6 8.7E-15 3E-19 117.0 9.9 124 221-348 17-149 (149)
130 2wfh_A SLIT homolog 2 protein 99.5 9.1E-14 3.1E-18 116.1 14.5 126 71-234 13-139 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.1E-19 119.6 7.6 133 171-308 15-154 (176)
132 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 112.1 15.0 130 71-237 10-140 (177)
133 3sb4_A Hypothetical leucine ri 99.5 1.1E-13 3.9E-18 125.4 11.9 222 67-301 48-328 (329)
134 4fdw_A Leucine rich hypothetic 99.5 1.6E-12 5.6E-17 120.8 18.9 242 85-350 129-381 (401)
135 3g39_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 109.2 12.0 109 199-311 11-119 (170)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-13 5E-18 113.1 8.5 58 89-150 16-74 (176)
137 4fdw_A Leucine rich hypothetic 99.4 5E-12 1.7E-16 117.6 19.1 241 91-357 112-363 (401)
138 2r9u_A Variable lymphocyte rec 99.4 9.6E-13 3.3E-17 108.0 12.2 108 200-311 15-122 (174)
139 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 106.7 12.6 108 177-286 11-118 (170)
140 1ds9_A Outer arm dynein; leuci 99.4 1.5E-15 5E-20 127.6 -6.0 84 221-308 93-186 (198)
141 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.8E-20 128.4 -6.8 62 89-152 15-82 (198)
142 2r9u_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 105.3 12.7 107 178-286 15-121 (174)
143 3un9_A NLR family member X1; l 99.2 7.7E-14 2.6E-18 128.5 -8.6 86 174-259 154-253 (372)
144 4fs7_A Uncharacterized protein 99.2 1.3E-09 4.5E-14 101.1 19.6 273 63-362 66-388 (394)
145 2ifg_A High affinity nerve gro 99.2 9.1E-11 3.1E-15 107.0 10.6 102 179-284 12-117 (347)
146 3un9_A NLR family member X1; l 99.2 1E-12 3.5E-17 121.0 -2.7 164 174-337 71-262 (372)
147 2ifg_A High affinity nerve gro 99.1 2.2E-10 7.4E-15 104.5 11.5 101 73-188 13-116 (347)
148 4gt6_A Cell surface protein; l 98.9 1.7E-07 5.8E-12 86.8 19.8 79 69-149 65-146 (394)
149 4fs7_A Uncharacterized protein 98.9 6.4E-08 2.2E-12 89.7 16.2 263 85-361 64-365 (394)
150 2ra8_A Uncharacterized protein 98.8 1.2E-09 4.2E-14 99.8 4.1 57 269-325 278-341 (362)
151 2ra8_A Uncharacterized protein 98.8 2.6E-09 8.8E-14 97.6 4.9 208 67-305 106-341 (362)
152 4gt6_A Cell surface protein; l 98.6 2.1E-06 7.2E-11 79.4 19.3 276 63-351 82-390 (394)
153 4h09_A Hypothetical leucine ri 98.5 3.2E-06 1.1E-10 77.7 17.0 114 197-315 217-330 (379)
154 1io0_A Tropomodulin; LRR prote 98.5 7.4E-09 2.5E-13 85.5 -2.2 70 84-153 28-106 (185)
155 1io0_A Tropomodulin; LRR prote 98.4 1.4E-08 4.8E-13 83.8 -2.3 46 108-153 28-78 (185)
156 4h09_A Hypothetical leucine ri 98.3 1.8E-05 6.2E-10 72.6 16.6 262 67-354 45-347 (379)
157 3rw6_A Nuclear RNA export fact 98.2 1E-06 3.6E-11 76.5 5.4 82 218-300 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.2 9E-07 3.1E-11 71.5 3.8 85 67-151 60-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 2.9E-06 9.8E-11 73.7 4.8 88 89-183 167-259 (267)
160 3e4g_A ATP synthase subunit S, 98.0 1.3E-06 4.4E-11 70.6 1.5 83 222-305 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 6.3E-05 2.2E-09 61.8 1.0 110 197-306 41-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 5E-05 1.7E-09 62.5 0.0 67 87-153 36-111 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.9E-08 48.9 6.2 56 179-234 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0035 1.2E-07 47.8 6.9 59 249-309 12-70 (130)
165 2lz0_A Uncharacterized protein 71.4 5.4 0.00019 28.3 4.4 45 104-149 8-52 (100)
166 2lz0_A Uncharacterized protein 54.0 26 0.00089 24.6 5.3 46 80-126 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-38 Score=322.57 Aligned_cols=318 Identities=27% Similarity=0.328 Sum_probs=173.4
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceecCcCCCCCCeEEEEEecCCCCccc---ccccccCCCCCCEEeCCC
Q 045704 25 FFGTTVAPGSCLSLWDFSVDPGDHLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPGS---LISSKWNLLHLPTLDISD 101 (362)
Q Consensus 25 ~~~~~~~~~~~l~~w~~~~~~c~~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~---~~~~~~~l~~L~~L~L~~ 101 (362)
||.+..||. .+++|..+.|||.| .||+|+. ++|+.|+++++.+.|. +++++.+++.|+.++++.
T Consensus 20 ~k~~~~~~~-~l~~W~~~~~~C~w-------~gv~C~~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~ 86 (768)
T 3rgz_A 20 FKDVLPDKN-LLPDWSSNKNPCTF-------DGVTCRD-----DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86 (768)
T ss_dssp HHTTCSCTT-SSTTCCTTSCGGGS-------TTEEEET-----TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred HHhhCCCcc-cccCCCCCCCCcCC-------cceEECC-----CcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence 556666777 89999877899999 9999984 8999999999999887 665555555555555544
Q ss_pred CcCCCCCchhhcCCCCCCEEeCcCCcCCccchh--hhcCCCCCcEEEccCCcccCC-------------eeEeecCCCCC
Q 045704 102 NSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHA--SVGSLSQLEELYLDNNDFQGP-------------RLEIRQNSISS 166 (362)
Q Consensus 102 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~-------------~l~l~~n~~~~ 166 (362)
+.+. .+|..|.++++|++|+|++|.+++.+|. .++++++|++|++++|.+.+. .++++.|.+.+
T Consensus 87 ~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 165 (768)
T 3rgz_A 87 SHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165 (768)
T ss_dssp SCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred CCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence 4443 2334444555555555555555444444 444555555555554443211 34444444444
Q ss_pred CCCC----CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhc
Q 045704 167 EFPY----LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLF 242 (362)
Q Consensus 167 ~~~~----~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 242 (362)
..+. +.++++|++|++++|.+.+..+..-.++|++|++++|.+.+.+|. +..+++|++|++++|.+++..+..+.
T Consensus 166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp ETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred cCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence 3332 344445555555555444433332224455555555555444433 44455555555555555544444454
Q ss_pred CCCCCcEEEccCCCCCCC---------------------CCCCCcCCC-CCCCEEEccCCcCCCCChhhhcCCCCCCeEe
Q 045704 243 DHPSLQQLTLSYNNFTSL---------------------QVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALS 300 (362)
Q Consensus 243 ~~~~L~~L~L~~n~l~~~---------------------~l~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 300 (362)
.+++|++|++++|.+.+. .+|..+... ++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 555555555555544431 234443332 5555555555555555555555555666666
Q ss_pred ccCCcCccCCChh-hhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCC-CCCCc
Q 045704 301 LEHNKFIGMIPTQ-FALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY-MCPEM 357 (362)
Q Consensus 301 L~~n~l~~~~~~~-~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~-~~P~~ 357 (362)
+++|++++.+|.. +... +|++++|.+++.+|..+..+.++|++|++++|.++ .+|..
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 6666555555543 3221 56666666655566555555225666666666554 34443
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-37 Score=306.46 Aligned_cols=315 Identities=19% Similarity=0.266 Sum_probs=210.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcC-------
Q 045704 32 PGSCLSLWDFSVDPGDHLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSF------- 104 (362)
Q Consensus 32 ~~~~l~~w~~~~~~c~~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i------- 104 (362)
+.+....|+.+.++|.|.. +.||+|+. .++|+.|+|+++++.|.+|++++++++|++|+|++|.+
T Consensus 53 ~~~~~~~W~~~~~~c~w~~----~~GV~C~~----~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~ 124 (636)
T 4eco_A 53 GTQPGANWNFNKELDMWGA----QPGVSLNS----NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124 (636)
T ss_dssp -----CCCCCSSCGGGTTC----CTTEEECT----TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSB
T ss_pred CCccCCCCCCCCCcccccC----CCCeEEcC----CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccc
Confidence 4445778998899999833 37999987 38999999999999999998888888888888887743
Q ss_pred -----------------------------------------------------------------------CCCCchhhc
Q 045704 105 -----------------------------------------------------------------------SGSVPDSLS 113 (362)
Q Consensus 105 -----------------------------------------------------------------------~~~~~~~~~ 113 (362)
++ +|..+.
T Consensus 125 ~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~ 203 (636)
T 4eco_A 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM 203 (636)
T ss_dssp STTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG
T ss_pred cccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh
Confidence 23 556666
Q ss_pred CCCCCCEEeCcCCcCCcc-----------------chhhhc--CCCCCcEEEccCCcccCC------------eeEeecC
Q 045704 114 KLVRRKRLGLSGNSFKCL-----------------IHASVG--SLSQLEELYLDNNDFQGP------------RLEIRQN 162 (362)
Q Consensus 114 ~l~~L~~L~L~~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~------------~l~l~~n 162 (362)
++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+. .+++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 666666666666666663 455555 566666666655554332 3444444
Q ss_pred --------------------------------CCCCCCC--CCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeC
Q 045704 163 --------------------------------SISSEFP--YLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRN 206 (362)
Q Consensus 163 --------------------------------~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~ 206 (362)
.+...+. .+..+++|++|++++|.+++.+| .+. ++|++|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 4442222 25556666666666666655555 443 5666666666
Q ss_pred CccCCCCcccccCCCC-CCEEEccCCcCCCcchhhhcCCC--CCcEEEccCCCCCCCCCCCCcC-------CCCCCCEEE
Q 045704 207 NNLVGNVPENFGDMEF-LQVLDLSRNKLSGTIFSVLFDHP--SLQQLTLSYNNFTSLQVPANMG-------LTSKLVALE 276 (362)
Q Consensus 207 n~l~~~~~~~l~~l~~-L~~L~ls~n~l~~~~~~~l~~~~--~L~~L~L~~n~l~~~~l~~~~~-------~~~~L~~L~ 276 (362)
|++. .+|..+.++++ |++|++++|.++ .+|..+...+ +|++|++++|.+++ ..|..+. .+++|++|+
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCCCCCCEEEEE
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC-cchhhhcccccccccCCCCCEEE
Confidence 6665 55666666666 777777777766 4455554433 67777777777766 3455555 556788888
Q ss_pred ccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhh-----------hhceeecccccccccCChhhh--cCCCCCcE
Q 045704 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF-----------ALKRLLWGGNYLFGPISGHLM--GMKPGFAN 343 (362)
Q Consensus 277 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~L~l~~N~l~~~~~~~~~--~~~~~L~~ 343 (362)
+++|.+++.++..+..+++|++|++++|+++...+..+ ...+|++++|+++ .+|..+. .+ ++|++
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l-~~L~~ 517 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL-PYLVG 517 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC-TTCCE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC-CCcCE
Confidence 88888886655666677888888888888884443333 2237888888887 6777776 77 68888
Q ss_pred EEecCCCCCCCCCcccCC
Q 045704 344 VSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 344 L~L~~N~l~~~P~~~~~~ 361 (362)
|+|++|+++.+|..++.+
T Consensus 518 L~Ls~N~l~~ip~~~~~l 535 (636)
T 4eco_A 518 IDLSYNSFSKFPTQPLNS 535 (636)
T ss_dssp EECCSSCCSSCCCGGGGC
T ss_pred EECCCCCCCCcChhhhcC
Confidence 888888888888877665
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.2e-38 Score=284.61 Aligned_cols=268 Identities=26% Similarity=0.402 Sum_probs=217.3
Q ss_pred CCCCCCCCCCCCC--CCCCCCcccceecCcCCCCCCeEEEEEecCCCCcc--cccccccCCCCCCEEeCCC-CcCCCCCc
Q 045704 35 CLSLWDFSVDPGD--HLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPG--SLISSKWNLLHLPTLDISD-NSFSGSVP 109 (362)
Q Consensus 35 ~l~~w~~~~~~c~--~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~ 109 (362)
.+++|+.+.++|. | .||.|+... ...+|+.|+++++.+++ .+|..+.++++|++|++++ |.+.+.+|
T Consensus 23 ~l~~W~~~~~~C~~~w-------~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p 94 (313)
T 1ogq_A 23 TLSSWLPTTDCCNRTW-------LGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94 (313)
T ss_dssp GGTTCCTTSCTTTTCS-------TTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC
T ss_pred cccCCCCCCCCCcCCC-------cceEeCCCC-CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC
Confidence 6899988889998 8 899998611 12799999999999999 8999999999999999995 99998999
Q ss_pred hhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccC
Q 045704 110 DSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNIT 188 (362)
Q Consensus 110 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~ 188 (362)
..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ +..|. +..+++|++|++++|.++
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------------GTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE------------SCCCGGGGGCTTCCEEECCSSCCE
T ss_pred hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC------------CcCChHHhcCCCCCeEECcCCccc
Confidence 99999999999999999999888999999999999999977764 34454 778889999999999888
Q ss_pred CCCCCCcc--c-CCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCC
Q 045704 189 GKIPPTFP--T-SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPAN 265 (362)
Q Consensus 189 ~~~~~~l~--~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~ 265 (362)
+.+|..+. + .|++|++++|++.+.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++. +..
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~ 239 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGK 239 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB--GGG
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee--cCc
Confidence 77777766 3 788888888888877888887776 88888888888877777788888888888888888752 233
Q ss_pred cCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc---eeeccccc
Q 045704 266 MGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK---RLLWGGNY 325 (362)
Q Consensus 266 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~L~l~~N~ 325 (362)
+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|...... .+++++|.
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 5667788888888888877777777778888888888777776666541111 45555554
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.4e-37 Score=309.38 Aligned_cols=289 Identities=33% Similarity=0.462 Sum_probs=226.6
Q ss_pred CCeEEEEEecCCCCccccccc-ccCCCCCCEEeCCCCcCCCCCchhhc-------------------------C--CCCC
Q 045704 67 SARVTEITLDPVGYPGSLISS-KWNLLHLPTLDISDNSFSGSVPDSLS-------------------------K--LVRR 118 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~-------------------------~--l~~L 118 (362)
.++++.|++++|.+.|.+|.. +.++++|++|++++|.+.+.+|..+. . +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 455666666666665555543 55555555555555555544444443 3 4566
Q ss_pred CEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCccc
Q 045704 119 KRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDN 185 (362)
Q Consensus 119 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n 185 (362)
++|++++|.+++.+|..+.++++|++|++++|.+++. .+++++|.+.+.+|. +..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 6777777777667777788888888888888877643 677888888877776 888888889999888
Q ss_pred ccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCC
Q 045704 186 NITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVP 263 (362)
Q Consensus 186 ~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~ 263 (362)
.+++..|..+. ++|++|++++|++.+.+|.++..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+ .+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG-TIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES-BCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC-cCC
Confidence 88888887776 888999999999888888888889999999999999988888888889999999999888764 333
Q ss_pred C----------------------------------------------------------------------CcCCCCCCC
Q 045704 264 A----------------------------------------------------------------------NMGLTSKLV 273 (362)
Q Consensus 264 ~----------------------------------------------------------------------~~~~~~~L~ 273 (362)
. .++.+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 2 233356788
Q ss_pred EEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCC
Q 045704 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDN 349 (362)
Q Consensus 274 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N 349 (362)
+|++++|++++.+|..+..+++|+.|+|++|+++|.+|..+... .|++++|+++|.+|..+..+ ++|++|+|++|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-CCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-CCCCEEECcCC
Confidence 99999999999999999999999999999999999999888764 89999999999999999999 69999999999
Q ss_pred CCC-CCCCc
Q 045704 350 CLY-MCPEM 357 (362)
Q Consensus 350 ~l~-~~P~~ 357 (362)
+++ .+|+.
T Consensus 715 ~l~g~iP~~ 723 (768)
T 3rgz_A 715 NLSGPIPEM 723 (768)
T ss_dssp EEEEECCSS
T ss_pred cccccCCCc
Confidence 986 77764
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-36 Score=303.97 Aligned_cols=294 Identities=20% Similarity=0.276 Sum_probs=198.7
Q ss_pred cceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeC-CCCcCCCC---------------------------
Q 045704 56 CGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDI-SDNSFSGS--------------------------- 107 (362)
Q Consensus 56 ~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L-~~n~i~~~--------------------------- 107 (362)
.||+|+. .++|+.|+|+++++.|.+|+.++++++|++|+| ++|.+.|.
T Consensus 315 ~GV~C~~----~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~ 390 (876)
T 4ecn_A 315 PGVDLDN----NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390 (876)
T ss_dssp TTEEECT----TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred CceEecC----CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhh
Confidence 7999986 589999999999999999999999999999999 66643322
Q ss_pred -------------------------------------------------CchhhcCCCCCCEEeCcCCcCCc--------
Q 045704 108 -------------------------------------------------VPDSLSKLVRRKRLGLSGNSFKC-------- 130 (362)
Q Consensus 108 -------------------------------------------------~~~~~~~l~~L~~L~L~~n~~~~-------- 130 (362)
+|..|.++++|++|+|++|.+++
T Consensus 391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~ 470 (876)
T 4ecn_A 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470 (876)
T ss_dssp HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccc
Confidence 67778888888888888888887
Q ss_pred ---------cchhhhc--CCCCCcEEEccCCcccCC------------eeEeecCC-CCC-CCCC-C-------CCCCCC
Q 045704 131 ---------LIHASVG--SLSQLEELYLDNNDFQGP------------RLEIRQNS-ISS-EFPY-L-------GSLKSL 177 (362)
Q Consensus 131 ---------~~~~~~~--~l~~L~~L~L~~n~l~~~------------~l~l~~n~-~~~-~~~~-~-------~~l~~L 177 (362)
.+|..++ ++++|++|++++|.+.+. .+++++|. +++ .+|. + ..+++|
T Consensus 471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 2566666 777888888877765442 56666665 555 3332 2 233466
Q ss_pred CEEeCcccccCCCCCC--Ccc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCC-CcEEEc
Q 045704 178 SFLDASDNNITGKIPP--TFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPS-LQQLTL 252 (362)
Q Consensus 178 ~~L~l~~n~~~~~~~~--~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~-L~~L~L 252 (362)
++|++++|.++ .+|. .+. ++|+.|++++|++. .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 66666666666 5555 444 56666666666665 555 5555666666666666655 44444555555 555555
Q ss_pred cCCCCCCCCCCCCcCC-------------------------------CCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 253 SYNNFTSLQVPANMGL-------------------------------TSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~-------------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
++|.++. +|..+.. .++|+.|++++|.+...++..+..+++|+.|++
T Consensus 627 s~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 627 SHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704 (876)
T ss_dssp CSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEEC
T ss_pred cCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEEC
Confidence 5555552 2332222 235667777777776544445557788888888
Q ss_pred cCCcCccCCChhh-----------hhceeecccccccccCChhhh--cCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 302 EHNKFIGMIPTQF-----------ALKRLLWGGNYLFGPISGHLM--GMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 302 ~~n~l~~~~~~~~-----------~~~~L~l~~N~l~~~~~~~~~--~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
++|+++...+..+ ....|++++|+++ .+|..+. .+ ++|+.|+|++|+++.+|..++.+
T Consensus 705 s~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l-~~L~~L~Ls~N~L~~lp~~l~~L 775 (876)
T 4ecn_A 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL-PYLSNMDVSYNCFSSFPTQPLNS 775 (876)
T ss_dssp CSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC-TTCCEEECCSSCCSSCCCGGGGC
T ss_pred CCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC-CCcCEEEeCCCCCCccchhhhcC
Confidence 8888874433332 2237888888887 6777776 67 68888888888888888777665
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-34 Score=275.19 Aligned_cols=284 Identities=22% Similarity=0.223 Sum_probs=212.6
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSV-PDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
.+++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 478999999999999888999999999999999999997555 5679999999999999999999989999999999999
Q ss_pred EccCCcccCC--------------eeEeecCCCCCCCCC--CCCCCCCCEEeCcccccCCCCCCCcc-------------
Q 045704 146 YLDNNDFQGP--------------RLEIRQNSISSEFPY--LGSLKSLSFLDASDNNITGKIPPTFP------------- 196 (362)
Q Consensus 146 ~L~~n~l~~~--------------~l~l~~n~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~------------- 196 (362)
++++|.+++. .+++++|.+.+..|. +..+++|++|++++|.+.+..+..+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999998751 688889999888776 78889999999999988876665443
Q ss_pred -----------------------cCCcEEEeeCCccCCCCccccc-----------------------------------
Q 045704 197 -----------------------TSLVELSVRNNNLVGNVPENFG----------------------------------- 218 (362)
Q Consensus 197 -----------------------~~L~~L~l~~n~l~~~~~~~l~----------------------------------- 218 (362)
++|++|++++|++.+..+..+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 2456666666655432222211
Q ss_pred ----CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC
Q 045704 219 ----DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP 294 (362)
Q Consensus 219 ----~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 294 (362)
..++|++|++++|.+.+..+..+..+++|++|++++|++++. .|..+..+++|++|++++|.+.+..+..+..++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 114566666666666666666667777777777777777652 345566667777777777777766666777777
Q ss_pred CCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 295 NLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
+|+.|++++|++++..|..+... +|++++|++++..+..+..+ ++|++|++++|+++
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTNPWD 408 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBC
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC-CcccEEEccCCCcc
Confidence 77777777777776666555432 67777777766555555666 57777777777776
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=267.25 Aligned_cols=276 Identities=19% Similarity=0.168 Sum_probs=183.3
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 56789999999999988888999999999999999999988899999999999999999999998878899999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFL 223 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L 223 (362)
+++|.+.. ..+. +..+++|++|++++|.+.+..+..+. ++|++|++++|++.+..+..+.++++|
T Consensus 111 Ls~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 111 ISENKIVI------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp CTTSCCCE------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred CCCCcccc------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 99887652 2222 55556666666666665554444444 566666666666654444455566666
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccC
Q 045704 224 QVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEH 303 (362)
Q Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 303 (362)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.......+|++|++++|.+++.++..+..+++|+.|++++
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 666666666655555555555666666666555443 2333333334555555555555554444555555555555555
Q ss_pred CcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 304 NKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 304 n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
|++++..+..+... +|++++|++++..|..+..+ ++|++|+|++|.++.+|.
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCH
Confidence 55555544433221 55555555555555555555 455555555555555554
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-33 Score=277.54 Aligned_cols=287 Identities=19% Similarity=0.217 Sum_probs=250.1
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc-CCC-CCchhhcCC------CCCCEEeCcCCcCCccchh--h
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS-FSG-SVPDSLSKL------VRRKRLGLSGNSFKCLIHA--S 135 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~ 135 (362)
...+++.|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+.++ ++|++|++++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 56889999999999999999999999999999999998 988 799888876 99999999999999 5677 8
Q ss_pred hcCCCCCcEEEccCCcccC-C----------eeEeecCCCCCCCCCCCCCCC-CCEEeCcccccCCCCCCCcc----cCC
Q 045704 136 VGSLSQLEELYLDNNDFQG-P----------RLEIRQNSISSEFPYLGSLKS-LSFLDASDNNITGKIPPTFP----TSL 199 (362)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~-~----------~l~l~~n~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~----~~L 199 (362)
++++++|++|++++|.+++ . .+++++|.+...+..+..+++ |++|++++|.++ .+|..+. ++|
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 9999999999999999882 2 688899999855445999999 999999999999 7787765 379
Q ss_pred cEEEeeCCccCCCCccccc-------CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCC-C--
Q 045704 200 VELSVRNNNLVGNVPENFG-------DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGL-T-- 269 (362)
Q Consensus 200 ~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~-~-- 269 (362)
++|++++|.+.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++. +|..... .
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccc
Confidence 9999999999998888888 78899999999999997766777789999999999999994 4553322 2
Q ss_pred -----CCCCEEEccCCcCCCCChhhhc--CCCCCCeEeccCCcCccCCChhhhhc----eeec------ccccccccCCh
Q 045704 270 -----SKLVALELSYNELGGFLPAYLA--SMPNLSALSLEHNKFIGMIPTQFALK----RLLW------GGNYLFGPISG 332 (362)
Q Consensus 270 -----~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l------~~N~l~~~~~~ 332 (362)
++|++|++++|.++. +|..+. .+++|+.|++++|++++ +|..+... .|++ ++|++.+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 289999999999995 666665 89999999999999998 66655443 8888 67889999999
Q ss_pred hhhcCCCCCcEEEecCCCCCCCCCccc
Q 045704 333 HLMGMKPGFANVSLVDNCLYMCPEMFF 359 (362)
Q Consensus 333 ~~~~~~~~L~~L~L~~N~l~~~P~~~~ 359 (362)
.+..+ ++|++|+|++|+++.+|..+.
T Consensus 561 ~l~~l-~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 561 GITLC-PSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp TGGGC-SSCCEEECCSSCCCBCCSCCC
T ss_pred HHhcC-CCCCEEECCCCcCCccCHhHh
Confidence 99999 799999999999999998754
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-33 Score=266.40 Aligned_cols=264 Identities=19% Similarity=0.214 Sum_probs=187.1
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchh--hcCCCCCCEEeCcCCcCCccchhh-hcCCCCCc
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDS--LSKLVRRKRLGLSGNSFKCLIHAS-VGSLSQLE 143 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~ 143 (362)
.+++++|++++|.+++..|..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+++..|.. +.++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 444555555555554444445555555555555555554333332 445555555555555555444433 44555555
Q ss_pred EEEccCCcccCC--------------eeEeecCCCCCCCCC---------CCCCCCCCEEeCcccccCCCCCCCc-----
Q 045704 144 ELYLDNNDFQGP--------------RLEIRQNSISSEFPY---------LGSLKSLSFLDASDNNITGKIPPTF----- 195 (362)
Q Consensus 144 ~L~L~~n~l~~~--------------~l~l~~n~~~~~~~~---------~~~l~~L~~L~l~~n~~~~~~~~~l----- 195 (362)
+|++++|.+.+. .++++.|.+.+..+. +..+++|++|++++|.+++..+..+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 555555544332 233444444433222 2245789999999997754222111
Q ss_pred --------------------------------c----cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchh
Q 045704 196 --------------------------------P----TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFS 239 (362)
Q Consensus 196 --------------------------------~----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 239 (362)
. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 1 4799999999999988899999999999999999999998899
Q ss_pred hhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc--
Q 045704 240 VLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK-- 317 (362)
Q Consensus 240 ~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-- 317 (362)
.+..+++|++|++++|.++++ .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.++..+...
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 999999999999999999863 36678889999999999999999889999999999999999999998877665432
Q ss_pred --eeecccccccccCC
Q 045704 318 --RLLWGGNYLFGPIS 331 (362)
Q Consensus 318 --~L~l~~N~l~~~~~ 331 (362)
+|++++|++++..|
T Consensus 397 L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCCcccCCC
Confidence 99999999999887
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-32 Score=271.39 Aligned_cols=142 Identities=20% Similarity=0.134 Sum_probs=97.2
Q ss_pred cCCCCCCEEEccCCcCCCcch-hhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCC-CChhhhcCCCC
Q 045704 218 GDMEFLQVLDLSRNKLSGTIF-SVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGG-FLPAYLASMPN 295 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~ 295 (362)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 334444444444444444444 445556666666666666655 345556667777777777777776 35667777788
Q ss_pred CCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCC
Q 045704 296 LSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFC 361 (362)
Q Consensus 296 L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~ 361 (362)
|+.|++++|++++..|..+... +|++++|++++.+|..+..+ ++|++|+|++|+++.+|..+..+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~p~~~~~l 543 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL-YSLSTLDCSFNRIETSKGILQHF 543 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC-TTCCEEECTTSCCCCEESCGGGS
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC-CcCCEEECCCCcCcccCHhHhhh
Confidence 8888888888877777665443 88888888888778888888 68888888888888888776543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-32 Score=271.08 Aligned_cols=283 Identities=22% Similarity=0.235 Sum_probs=248.7
Q ss_pred eEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEcc
Q 045704 69 RVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLD 148 (362)
Q Consensus 69 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 148 (362)
+++.|+++++.+++..+..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 8999999999999888888999999999999999998 788889999999999999999999888899999999999999
Q ss_pred CCcccCC-------------eeEeecCCCCCCC--CC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC
Q 045704 149 NNDFQGP-------------RLEIRQNSISSEF--PY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV 210 (362)
Q Consensus 149 ~n~l~~~-------------~l~l~~n~~~~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~ 210 (362)
+|.+... .+++++|.+.+.. +. +..+++|++|++++|.+.+..+..+. ++|++|++++|++.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9976521 6788888888764 44 88999999999999998877777776 89999999999998
Q ss_pred CCCcc-cccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCC--CCCCcCCCCCCCEEEccCCcCCCCCh
Q 045704 211 GNVPE-NFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQ--VPANMGLTSKLVALELSYNELGGFLP 287 (362)
Q Consensus 211 ~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~--l~~~~~~~~~L~~L~L~~n~l~~~~~ 287 (362)
+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. .+..+..+++|++|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 76554 4888999999999999999888888999999999999999987632 23457888999999999999999888
Q ss_pred hhhcCCCCCCeEeccCCcCccCCChhhhhc---eeecccccccccCChhhhcCCCCCcEEEecCCCCCC
Q 045704 288 AYLASMPNLSALSLEHNKFIGMIPTQFALK---RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 288 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~ 353 (362)
..+..+++|+.|++++|++++..|..+... +|++++|++++..|..+..+ ++|++|++++|+++.
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPIL-SQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHHHH-HTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcccC-CCCCEEeCCCCCccc
Confidence 999999999999999999999888877654 79999999998888888888 799999999999874
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.3e-33 Score=267.58 Aligned_cols=289 Identities=20% Similarity=0.206 Sum_probs=214.4
Q ss_pred CCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCcc-chhhhcCCCCCc
Q 045704 65 SGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCL-IHASVGSLSQLE 143 (362)
Q Consensus 65 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~ 143 (362)
...++++.|++++|.+++..|..+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 35678899999999998888888999999999999999998 56655 789999999999999873 578899999999
Q ss_pred EEEccCCcccC-----------CeeEeecCCC--CCCCCC-CCCCC----------------------------------
Q 045704 144 ELYLDNNDFQG-----------PRLEIRQNSI--SSEFPY-LGSLK---------------------------------- 175 (362)
Q Consensus 144 ~L~L~~n~l~~-----------~~l~l~~n~~--~~~~~~-~~~l~---------------------------------- 175 (362)
+|++++|.+.. ..++++.|.+ .+..|. +..+.
T Consensus 119 ~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred EEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 99999998764 4677888877 444444 44322
Q ss_pred -------------------------------------------------CCCEEeCcccccCCCCCCCc-----c--cC-
Q 045704 176 -------------------------------------------------SLSFLDASDNNITGKIPPTF-----P--TS- 198 (362)
Q Consensus 176 -------------------------------------------------~L~~L~l~~n~~~~~~~~~l-----~--~~- 198 (362)
+|++|++++|.+++.+|..+ . +.
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 56666666666665566554 1 22
Q ss_pred -------------------------CcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEcc
Q 045704 199 -------------------------LVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLS 253 (362)
Q Consensus 199 -------------------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~ 253 (362)
++.|++++|++.... .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 333444444332111 01567788888888888887777788888888888888
Q ss_pred CCCCCCC-CCCCCcCCCCCCCEEEccCCcCCCCCh-hhhcCCCCCCeEeccCCcCccCCChhhh--hceeeccccccccc
Q 045704 254 YNNFTSL-QVPANMGLTSKLVALELSYNELGGFLP-AYLASMPNLSALSLEHNKFIGMIPTQFA--LKRLLWGGNYLFGP 329 (362)
Q Consensus 254 ~n~l~~~-~l~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~l~~N~l~~~ 329 (362)
+|+++++ .+|..++.+++|++|++++|.+.+.+| ..+..+++|+.|++++|++++..|..+. ...|++++|+++ .
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-S 435 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-C
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-c
Confidence 8888753 123456778888888888888887344 3477788888888888888877766653 238899999887 7
Q ss_pred CChhhhcCCCCCcEEEecCCCCCCCCCc-ccC
Q 045704 330 ISGHLMGMKPGFANVSLVDNCLYMCPEM-FFF 360 (362)
Q Consensus 330 ~~~~~~~~~~~L~~L~L~~N~l~~~P~~-~~~ 360 (362)
+|..+..+ ++|++|++++|+++.+|.. +..
T Consensus 436 ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 436 IPKQVVKL-EALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp CCGGGGGC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred cchhhhcC-CCCCEEECCCCcCCccCHHHhcc
Confidence 88888788 6899999999999888886 443
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-32 Score=266.16 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=115.7
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCC-CCCCcCCCCCCCEEEccCCcCCC-CChhhhcCCCC
Q 045704 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQ-VPANMGLTSKLVALELSYNELGG-FLPAYLASMPN 295 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-l~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~ 295 (362)
..+++|++|++++|.+++..+..+..+++|++|++++|++++++ +|..+..+++|++|++++|.+.+ .++..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788999999999998888888888999999999999988642 23457788899999999999987 44456788899
Q ss_pred CCeEeccCCcCccCCChhhh--hceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCc-ccCC
Q 045704 296 LSALSLEHNKFIGMIPTQFA--LKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEM-FFFC 361 (362)
Q Consensus 296 L~~L~L~~n~l~~~~~~~~~--~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~-~~~~ 361 (362)
|++|++++|++++..|..+. ..+|++++|+++ .+|..+..+ ++|++|+|++|+++.+|.. +..+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHL-QALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSS-CCCSEEECCSSCCCCCCTTSTTTC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCC-CCCCEEECCCCCCCCCCHHHHhcC
Confidence 99999999999887776653 338999999987 688877788 7999999999999999987 5443
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-31 Score=263.02 Aligned_cols=153 Identities=20% Similarity=0.177 Sum_probs=77.7
Q ss_pred cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCC-CcCCCCCCCEE
Q 045704 197 TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVAL 275 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~-~~~~~~~L~~L 275 (362)
++|++|++++|++. .+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.. .++. .+..+++|++|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchhhhhccCcCCEE
Confidence 45555556555555 455555666666666666666665555555555556666665555543 1222 24455555555
Q ss_pred EccCCcCCCCC--hhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChh-hhcCCCCCcEEEecC
Q 045704 276 ELSYNELGGFL--PAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGH-LMGMKPGFANVSLVD 348 (362)
Q Consensus 276 ~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~-~~~~~~~L~~L~L~~ 348 (362)
++++|.+.+.. +..+..+++|+.|++++|++.+..|..+... +|++++|.+++..+.. +..+ ++|++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEECCC
Confidence 55555555433 3444555555555555555554444433221 4444444444433322 3334 3444444444
Q ss_pred CCCC
Q 045704 349 NCLY 352 (362)
Q Consensus 349 N~l~ 352 (362)
|.++
T Consensus 435 n~l~ 438 (606)
T 3t6q_A 435 SLLD 438 (606)
T ss_dssp CCCB
T ss_pred CccC
Confidence 4443
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-31 Score=271.02 Aligned_cols=287 Identities=19% Similarity=0.196 Sum_probs=241.4
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc-CCC-CCchhhcCCC-------CCCEEeCcCCcCCccchh--
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS-FSG-SVPDSLSKLV-------RRKRLGLSGNSFKCLIHA-- 134 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~-- 134 (362)
...+++.|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+.+++ +|++|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 56889999999999999999999999999999999998 887 7887776555 9999999999999 5577
Q ss_pred hhcCCCCCcEEEccCCcccCC----------eeEeecCCCCCCCCCCCCCCC-CCEEeCcccccCCCCCCCcc----cCC
Q 045704 135 SVGSLSQLEELYLDNNDFQGP----------RLEIRQNSISSEFPYLGSLKS-LSFLDASDNNITGKIPPTFP----TSL 199 (362)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~~----------~l~l~~n~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~----~~L 199 (362)
.|.++++|++|++++|.++.. .+++++|.+...+..+..+++ |++|++++|.++ .+|..+. ++|
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 899999999999999988743 688899999944445889999 999999999998 6777665 349
Q ss_pred cEEEeeCCccCCCCccc---cc--CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCC------
Q 045704 200 VELSVRNNNLVGNVPEN---FG--DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGL------ 268 (362)
Q Consensus 200 ~~L~l~~n~l~~~~~~~---l~--~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~------ 268 (362)
+.|++++|++.+.+|.. +. .+++|+.|++++|.++...+..+..+++|+.|++++|+++. +|.....
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccc
Confidence 99999999998765532 22 34589999999999996665666689999999999999984 4554332
Q ss_pred --CCCCCEEEccCCcCCCCChhhhc--CCCCCCeEeccCCcCccCCChhhhhc----eeeccc------ccccccCChhh
Q 045704 269 --TSKLVALELSYNELGGFLPAYLA--SMPNLSALSLEHNKFIGMIPTQFALK----RLLWGG------NYLFGPISGHL 334 (362)
Q Consensus 269 --~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~------N~l~~~~~~~~ 334 (362)
+++|+.|++++|+++. +|..+. .+++|+.|+|++|++++ +|..+... .|++++ |.+.+.+|..+
T Consensus 725 ~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 2389999999999995 667776 89999999999999998 45555433 888865 88899999999
Q ss_pred hcCCCCCcEEEecCCCCCCCCCccc
Q 045704 335 MGMKPGFANVSLVDNCLYMCPEMFF 359 (362)
Q Consensus 335 ~~~~~~L~~L~L~~N~l~~~P~~~~ 359 (362)
..+ ++|++|+|++|+++.+|..+.
T Consensus 803 ~~L-~~L~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 803 TTC-PSLIQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp GGC-SSCCEEECCSSCCCBCCSCCC
T ss_pred hcC-CCCCEEECCCCCCCccCHhhc
Confidence 999 799999999999999998754
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=259.84 Aligned_cols=276 Identities=21% Similarity=0.187 Sum_probs=233.6
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCc
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLE 143 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 143 (362)
+...+++++|++++|.+++..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 45678999999999999998899999999999999999999966666789999999999999999999999999999999
Q ss_pred EEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCC
Q 045704 144 ELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDM 220 (362)
Q Consensus 144 ~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l 220 (362)
+|++++|.+. +..+. +..+++|++|++++|.+++..+..+. ++|+.|++++|.+.+..+..+..+
T Consensus 132 ~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 132 SLEVGDNDLV------------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp EEEECCTTCC------------EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred EEECCCCccc------------eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 9999988764 23333 77889999999999988854444444 889999999999987777788889
Q ss_pred CCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCC-CCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeE
Q 045704 221 EFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVP-ANMGLTSKLVALELSYNELGGFLPAYLASMPNLSAL 299 (362)
Q Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 299 (362)
++|++|++++|...+..+.......+|++|++++|+++.+ | ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV--PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC--CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCccccc--CHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 9999999999887777776666667899999999998853 4 356778899999999999988888888889999999
Q ss_pred eccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCC
Q 045704 300 SLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMC 354 (362)
Q Consensus 300 ~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~ 354 (362)
++++|++++..|..+... +|++++|.+++..+..+..+ ++|++|+|++|++..-
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV-GNLETLILDSNPLACD 335 (477)
T ss_dssp ECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG-GGCCEEECCSSCEECS
T ss_pred ECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC-cccCEEEccCCCccCc
Confidence 999999998888776543 89999999987666677778 6999999999988743
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-31 Score=259.10 Aligned_cols=122 Identities=22% Similarity=0.177 Sum_probs=79.0
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
++++.|++++|.+++..|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777777777777666677777777777777777777666667777777777777777777776666777777777777
Q ss_pred cCCcccCC-------------eeEeecCCCCCCCC-C-CCCCCCCCEEeCcccccCC
Q 045704 148 DNNDFQGP-------------RLEIRQNSISSEFP-Y-LGSLKSLSFLDASDNNITG 189 (362)
Q Consensus 148 ~~n~l~~~-------------~l~l~~n~~~~~~~-~-~~~l~~L~~L~l~~n~~~~ 189 (362)
++|.++.. .+++++|.+.+.++ . +..+++|++|++++|.+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 77766531 34555554222222 2 4444555555555444443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=7.8e-31 Score=253.77 Aligned_cols=278 Identities=23% Similarity=0.250 Sum_probs=220.5
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCC-CCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCC
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSG-SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQL 142 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 142 (362)
+...+++++|++++|.++ .+|.. .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++. .+..+++|
T Consensus 65 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L 138 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHL 138 (520)
T ss_dssp GTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTS
T ss_pred hhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccc
Confidence 456789999999999998 56665 89999999999999986 4788999999999999999998763 34555555
Q ss_pred --cEEEccCCcc--------------------------------------------------------------------
Q 045704 143 --EELYLDNNDF-------------------------------------------------------------------- 152 (362)
Q Consensus 143 --~~L~L~~n~l-------------------------------------------------------------------- 152 (362)
++|++++|.+
T Consensus 139 ~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218 (520)
T ss_dssp CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG
T ss_pred eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc
Confidence 7777666655
Q ss_pred -----------------------------cCCeeEeecCCCCCCCCC-C-----CCCCCCCEEeCccccc----------
Q 045704 153 -----------------------------QGPRLEIRQNSISSEFPY-L-----GSLKSLSFLDASDNNI---------- 187 (362)
Q Consensus 153 -----------------------------~~~~l~l~~n~~~~~~~~-~-----~~l~~L~~L~l~~n~~---------- 187 (362)
.-..+++++|.+.+.+|. + ..+++|+.+++++|.+
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~ 298 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcc
Confidence 112456677777766665 5 6666666665555554
Q ss_pred ----------------CCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCC--cchhhhcCCCCCcE
Q 045704 188 ----------------TGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSG--TIFSVLFDHPSLQQ 249 (362)
Q Consensus 188 ----------------~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~~~~L~~ 249 (362)
.......-.++|++|++++|++.+..|..+.++++|++|++++|.+++ ..|..+..+++|++
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred cccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 321111222899999999999998899999999999999999999997 55678999999999
Q ss_pred EEccCCCCCCCCCCC-CcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccc
Q 045704 250 LTLSYNNFTSLQVPA-NMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGN 324 (362)
Q Consensus 250 L~L~~n~l~~~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N 324 (362)
|++++|.+++ .+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+... +|++++|
T Consensus 379 L~Ls~N~l~~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 379 LDISQNSVSY-DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp EECCSSCCBC-CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcCCc-ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence 9999999987 2454 367789999999999999887776654 79999999999999 455544332 9999999
Q ss_pred cccccCChh-hhcCCCCCcEEEecCCCCCC
Q 045704 325 YLFGPISGH-LMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 325 ~l~~~~~~~-~~~~~~~L~~L~L~~N~l~~ 353 (362)
+++ .+|.. +..+ ++|++|++++|++++
T Consensus 455 ~l~-~l~~~~~~~l-~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 455 QLK-SVPDGIFDRL-TSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCC-CCCTTTTTTC-TTCCEEECCSSCBCC
T ss_pred cCC-ccCHHHhccC-CcccEEECcCCCCcc
Confidence 998 46665 7788 799999999999974
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3.3e-31 Score=270.28 Aligned_cols=288 Identities=22% Similarity=0.181 Sum_probs=216.3
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSV-PDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEE 144 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 144 (362)
..++++.|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3588999999999999888999999999999999999665555 778999999999999999999998999999999999
Q ss_pred EEccCCcccCC--------------eeEeecCCCCCCCCC--CCCCCCCCEEeCcccccCCCCCCCcc----cCCcEEEe
Q 045704 145 LYLDNNDFQGP--------------RLEIRQNSISSEFPY--LGSLKSLSFLDASDNNITGKIPPTFP----TSLVELSV 204 (362)
Q Consensus 145 L~L~~n~l~~~--------------~l~l~~n~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~----~~L~~L~l 204 (362)
|++++|.+++. .++++.|.+.+..+. +.++++|++|++++|.+++..+..+. ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 99999988641 688889998887653 88999999999999998877776665 67788888
Q ss_pred eCCccCCCCcccccCCCC------CCEEEccCCcCCCcchhhhc------------------------------------
Q 045704 205 RNNNLVGNVPENFGDMEF------LQVLDLSRNKLSGTIFSVLF------------------------------------ 242 (362)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~------L~~L~ls~n~l~~~~~~~l~------------------------------------ 242 (362)
+.|.+.+..+..+..+++ |++|++++|.+++..+..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888777666666555544 77777777765543332221
Q ss_pred C--CCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc---
Q 045704 243 D--HPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK--- 317 (362)
Q Consensus 243 ~--~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--- 317 (362)
+ .++|+.|++++|.+... .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+...
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred ccccCCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 1 25677777777776653 35556667777777777777777666667777777777777777776666555332
Q ss_pred -eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCC
Q 045704 318 -RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCP 355 (362)
Q Consensus 318 -~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P 355 (362)
.|++++|.+.+..+..+..+ ++|++|++++|.++.+|
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCS
T ss_pred CEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCccc
Confidence 67777777766555566666 57777777777766554
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.9e-31 Score=259.22 Aligned_cols=275 Identities=20% Similarity=0.157 Sum_probs=179.4
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.++++++.++...+..+.++++|++|++++|.+.+..+..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 36678888888888766556678899999999999999877777899999999999999999998888889999999999
Q ss_pred ccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCC
Q 045704 147 LDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 213 (362)
+++|.++.. .+++++|.+.+..|. +..+++|++|++++|.+++. +....++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSE--
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCcccc--
Confidence 998876542 455555555555554 55666666666666665532 22222455555555554432
Q ss_pred cccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCC
Q 045704 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM 293 (362)
Q Consensus 214 ~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 293 (362)
+...++|++|++++|.+....+. ..++|+.|++++|.+++ +..+..+++|+.|++++|.+.+.+|..+..+
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ---ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 12234455555555555433221 12456666666666664 2455566667777777777666666666666
Q ss_pred CCCCeEeccCCcCccCCChhh---hhceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCC
Q 045704 294 PNLSALSLEHNKFIGMIPTQF---ALKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCP 355 (362)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P 355 (362)
++|+.|++++|.+++..+... ....|++++|.++ .+|..+..+ ++|++|+|++|.++.+|
T Consensus 278 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCCC
T ss_pred cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccC-CCCCEEECCCCCCCCcC
Confidence 777777777776665432221 1116677777665 456666666 56677777777666554
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.6e-31 Score=245.19 Aligned_cols=275 Identities=20% Similarity=0.150 Sum_probs=177.0
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.++++++.++...+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 47788899999888755445578899999999999999877777899999999999999999998888899999999999
Q ss_pred ccCCcccCC------------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCC
Q 045704 147 LDNNDFQGP------------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 213 (362)
+++|.++.. .+++++|.+.+..+. +..+++|++|++++|.+++. +....++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~~-- 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST-- 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCSE--
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecccccccc--
Confidence 998876532 445555555554444 55555555555555555532 21111444444444444331
Q ss_pred cccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCC
Q 045704 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM 293 (362)
Q Consensus 214 ~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 293 (362)
+...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+
T Consensus 201 ---~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 201 ---LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ---EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ---cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 1222345555555555543322 1235666666666666642 345566667777777777666666666666
Q ss_pred CCCCeEeccCCcCccCCChhh---hhceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCC
Q 045704 294 PNLSALSLEHNKFIGMIPTQF---ALKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCP 355 (362)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P 355 (362)
++|+.|++++|++++...... ...+|++++|+++ .+|..+..+ ++|++|++++|.++.+|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCCC
T ss_pred ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCccceeC
Confidence 777777777776665432211 1126677777665 455556666 56677777777666655
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.9e-32 Score=246.84 Aligned_cols=248 Identities=26% Similarity=0.407 Sum_probs=223.1
Q ss_pred CCCCEEeCCCCcCCC--CCchhhcCCCCCCEEeCcC-CcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCC
Q 045704 92 LHLPTLDISDNSFSG--SVPDSLSKLVRRKRLGLSG-NSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEF 168 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~ 168 (362)
.++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.++ +..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS------------GAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE------------EEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC------------CcC
Confidence 578999999999998 8999999999999999995 9999889999999999999999977654 345
Q ss_pred CC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCC-CCCEEEccCCcCCCcchhhhcCC
Q 045704 169 PY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDME-FLQVLDLSRNKLSGTIFSVLFDH 244 (362)
Q Consensus 169 ~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~~ 244 (362)
|. +..+++|++|++++|.+++..|..+. ++|++|++++|++.+.+|..+..++ +|++|++++|.+++..|..+..+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 55 88899999999999999988888887 9999999999999989999999998 99999999999999999999888
Q ss_pred CCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eee
Q 045704 245 PSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLL 320 (362)
Q Consensus 245 ~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~ 320 (362)
+ |++|++++|.+++ ..|..+..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+... +|+
T Consensus 198 ~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp C-CSEEECCSSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred c-ccEEECcCCcccC-cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 7 9999999999987 4577888999999999999999986665 7889999999999999999999887654 999
Q ss_pred cccccccccCChhhhcCCCCCcEEEecCCC-CCCCCC
Q 045704 321 WGGNYLFGPISGHLMGMKPGFANVSLVDNC-LYMCPE 356 (362)
Q Consensus 321 l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~-l~~~P~ 356 (362)
+++|++++.+|.. ..+ ++|+.+++++|+ +...|.
T Consensus 275 Ls~N~l~~~ip~~-~~l-~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNL-QRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCSSEEEEECCCS-TTG-GGSCGGGTCSSSEEESTTS
T ss_pred CcCCcccccCCCC-ccc-cccChHHhcCCCCccCCCC
Confidence 9999999999987 777 799999999998 544443
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.1e-30 Score=236.41 Aligned_cols=262 Identities=21% Similarity=0.223 Sum_probs=178.1
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
+.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++.. |..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEEEC
Confidence 3455566666555554444555556666666666665544455555566666666666655543 22222 45555555
Q ss_pred cCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCC--CCCCCcc--cCCcEEEeeCCccCCCCcccccCCCC
Q 045704 148 DNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITG--KIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEF 222 (362)
Q Consensus 148 ~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~--~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~ 222 (362)
++|. +.+..+. +..+++|++|++++|.+.. ..+..+. ++|++|++++|++. .+|..+. ++
T Consensus 129 ~~n~------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~ 193 (330)
T 1xku_A 129 HENE------------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS 193 (330)
T ss_dssp CSSC------------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TT
T ss_pred CCCc------------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--cc
Confidence 5444 4444444 7778888899988888753 4455555 78888888888887 4555443 78
Q ss_pred CCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEecc
Q 045704 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLE 302 (362)
Q Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 302 (362)
|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECC
Confidence 88899998888887788888888899999998888863 24467778888899999888884 66677888889999999
Q ss_pred CCcCccCCChhhhh----------ceeecccccccc--cCChhhhcCCCCCcEEEecCCC
Q 045704 303 HNKFIGMIPTQFAL----------KRLLWGGNYLFG--PISGHLMGMKPGFANVSLVDNC 350 (362)
Q Consensus 303 ~n~l~~~~~~~~~~----------~~L~l~~N~l~~--~~~~~~~~~~~~L~~L~L~~N~ 350 (362)
+|++++..+..+.. ..+++++|.+.. ..|..+..+ ++++.++|++|+
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~-~~l~~l~L~~N~ 330 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV-YVRAAVQLGNYK 330 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC-CCGGGEEC----
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc-cceeEEEecccC
Confidence 98888877665532 178888887753 445666666 688888888874
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.8e-31 Score=259.25 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=137.0
Q ss_pred cCCcEEEeeCCccCCCCc-ccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEE
Q 045704 197 TSLVELSVRNNNLVGNVP-ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVAL 275 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L 275 (362)
++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+|..++.+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 566777777777776666 5788999999999999999998999999999999999999999863357888999999999
Q ss_pred EccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCC
Q 045704 276 ELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCL 351 (362)
Q Consensus 276 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l 351 (362)
++++|.+++..|..+..+++|+.|++++|++++..|..+... +|++++|+++ .+|..+..+..+|++|++++|++
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 999999999889999999999999999999999988887653 9999999997 67777888833699999999999
Q ss_pred CC
Q 045704 352 YM 353 (362)
Q Consensus 352 ~~ 353 (362)
..
T Consensus 558 ~c 559 (606)
T 3vq2_A 558 AC 559 (606)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.1e-30 Score=253.07 Aligned_cols=280 Identities=21% Similarity=0.227 Sum_probs=201.7
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCcc-chhhhcCCCCCcE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCL-IHASVGSLSQLEE 144 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~ 144 (362)
..+++++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|++++. .|..|+++++|++
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 3445555555555555554555555555555555555555 34433 555666666666666553 2466777777777
Q ss_pred EEccCCcccC-----------CeeEeecCCC--CCCCCC-CCCCC-----------------------------------
Q 045704 145 LYLDNNDFQG-----------PRLEIRQNSI--SSEFPY-LGSLK----------------------------------- 175 (362)
Q Consensus 145 L~L~~n~l~~-----------~~l~l~~n~~--~~~~~~-~~~l~----------------------------------- 175 (362)
|++++|.+.. ..++++.|.+ .+..|. +..+.
T Consensus 151 L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred EecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 7777777653 3556666666 444333 32221
Q ss_pred ----------------------------------------------CCCEEeCcccccCCCCCCCc--------------
Q 045704 176 ----------------------------------------------SLSFLDASDNNITGKIPPTF-------------- 195 (362)
Q Consensus 176 ----------------------------------------------~L~~L~l~~n~~~~~~~~~l-------------- 195 (362)
+|++|++++|.+++.+|..+
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence 56677777777766565543
Q ss_pred ---------------------------------------c--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCC
Q 045704 196 ---------------------------------------P--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLS 234 (362)
Q Consensus 196 ---------------------------------------~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 234 (362)
. ++|++|++++|++.+..|..+.++++|++|++++|.++
T Consensus 311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp EEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred hcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 2 68899999999999888999999999999999999998
Q ss_pred Cc--chhhhcCCCCCcEEEccCCCCCCCCCCC-CcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 235 GT--IFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 235 ~~--~~~~l~~~~~L~~L~L~~n~l~~~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+. .|..+..+++|++|++++|.+++ .+|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++..++
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~ 467 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNS-HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK 467 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBS-CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCC-ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh
Confidence 74 45678899999999999999987 2344 477889999999999999886665544 799999999999995544
Q ss_pred hhhhh---ceeecccccccccCChh-hhcCCCCCcEEEecCCCCCC
Q 045704 312 TQFAL---KRLLWGGNYLFGPISGH-LMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 312 ~~~~~---~~L~l~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~l~~ 353 (362)
..+.. .+|++++|+++ .+|.. +..+ ++|++|++++|+++.
T Consensus 468 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l-~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLK-SVPDGVFDRL-TSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTTSSCCCSEEECCSSCCC-CCCTTSTTTC-TTCCCEECCSCCBCC
T ss_pred hhcCCCCCCEEECCCCCCC-CCCHHHHhcC-CCCCEEEecCCCcCC
Confidence 44422 29999999998 56666 8888 799999999999874
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=264.44 Aligned_cols=293 Identities=24% Similarity=0.254 Sum_probs=197.5
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchh--hcCCCCCCEEeCcCCcCCccch-hhhcCCC
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDS--LSKLVRRKRLGLSGNSFKCLIH-ASVGSLS 140 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~ 140 (362)
+...++++.|++++|.+.+..|..+.++++|++|++++|.+.+..|.. |.++++|++|++++|.+++..+ ..|++++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 456788899999999988888888999999999999999988766655 8889999999999999887654 5788999
Q ss_pred CCcEEEccCCcccCC--------------eeEeecCCCCCCCCC-CCCCCC------CCEEeCccc--------------
Q 045704 141 QLEELYLDNNDFQGP--------------RLEIRQNSISSEFPY-LGSLKS------LSFLDASDN-------------- 185 (362)
Q Consensus 141 ~L~~L~L~~n~l~~~--------------~l~l~~n~~~~~~~~-~~~l~~------L~~L~l~~n-------------- 185 (362)
+|++|++++|.++.. .++++.|.+.+..+. +..+++ |++|++++|
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 999999998887542 456666666654443 333332 555555555
Q ss_pred ------------------------------------------------ccCCCCCCCcc--cCCcEEEeeCCccCCCCcc
Q 045704 186 ------------------------------------------------NITGKIPPTFP--TSLVELSVRNNNLVGNVPE 215 (362)
Q Consensus 186 ------------------------------------------------~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~ 215 (362)
.+.+..+..+. ++|+.|++++|++.+..+.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 43333333333 5566666666666655555
Q ss_pred cccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC---------
Q 045704 216 NFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL--------- 286 (362)
Q Consensus 216 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~--------- 286 (362)
.|.++++|++|++++|.+++..+..+..+++|+.|++++|.+..+. +..+..+++|++|++++|.+++..
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~ 387 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEE
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCcccCCCCcchhc
Confidence 6666666666666666666665666666666666666666665532 334556666777777666655421
Q ss_pred -------------------------------hhhhcCCCCCCeEeccCCcCccCCCh-----------------------
Q 045704 287 -------------------------------PAYLASMPNLSALSLEHNKFIGMIPT----------------------- 312 (362)
Q Consensus 287 -------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------- 312 (362)
+..+..+++|+.|++++|++++..+.
T Consensus 388 l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp EESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred cCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 11123556666666666666532221
Q ss_pred -------hhhh----ceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcc
Q 045704 313 -------QFAL----KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMF 358 (362)
Q Consensus 313 -------~~~~----~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~ 358 (362)
.+.. ..|++++|++++..|..+..+ ++|++|+|++|+|+.+|...
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL-TALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC-CSCSEEEEESCCCSSCCCCC
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHccch-hhhheeECCCCCCCccChhh
Confidence 1111 178888888888788888888 69999999999999887654
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=238.09 Aligned_cols=271 Identities=19% Similarity=0.246 Sum_probs=161.7
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
+.+++++++++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 34444444443 2333321 34555555555555444444555555555555555555544555555555555555554
Q ss_pred cccCC---------eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCC--CCCCCcc-cCCcEEEeeCCccCCCCcccc
Q 045704 151 DFQGP---------RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITG--KIPPTFP-TSLVELSVRNNNLVGNVPENF 217 (362)
Q Consensus 151 ~l~~~---------~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~--~~~~~l~-~~L~~L~l~~n~l~~~~~~~l 217 (362)
.+... .+++++|.+.+..+. +..+++|++|++++|.++. ..+..+. .+|++|++++|++.+ +|..+
T Consensus 113 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~ 191 (332)
T 2ft3_A 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL 191 (332)
T ss_dssp CCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSS
T ss_pred cCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCccc
Confidence 44321 223333444444444 6677777777777777642 3444444 477777777777763 44444
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCC
Q 045704 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLS 297 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 297 (362)
. ++|++|++++|.+++..+..+..+++|+.|++++|.++++ .+..+..+++|++|++++|+++. +|..+..+++|+
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~ 267 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQ 267 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCC
T ss_pred c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCC
Confidence 3 5777777887777777767777777788888888777763 24456677778888888777774 556677777788
Q ss_pred eEeccCCcCccCCChhhhh----------ceeeccccccc--ccCChhhhcCCCCCcEEEecCCC
Q 045704 298 ALSLEHNKFIGMIPTQFAL----------KRLLWGGNYLF--GPISGHLMGMKPGFANVSLVDNC 350 (362)
Q Consensus 298 ~L~L~~n~l~~~~~~~~~~----------~~L~l~~N~l~--~~~~~~~~~~~~~L~~L~L~~N~ 350 (362)
.|++++|++++..+..+.. ..+++++|.+. +..|..+..+ ++|+.+++++|.
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l-~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV-TDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB-CCSTTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc-chhhhhhccccc
Confidence 8888888777766554432 16777777765 4555666666 577777777764
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.2e-31 Score=257.60 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=72.1
Q ss_pred hcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCc-cCCChhhhhc--
Q 045704 241 LFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFI-GMIPTQFALK-- 317 (362)
Q Consensus 241 l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-- 317 (362)
+..+++|++|++++|.+.+......+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. +.+|..+...
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4444555555555555544221234556667777777777776666666677777777777777766 3445443322
Q ss_pred --eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 318 --RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 318 --~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
+|++++|++++..|..+..+ ++|++|++++|.++.+|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCT
T ss_pred CCEEECCCCccccCChhhhhcc-cCCCEEeCCCCcCCCCCH
Confidence 67777777777667777777 577777777777776654
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.2e-30 Score=257.31 Aligned_cols=283 Identities=19% Similarity=0.138 Sum_probs=187.3
Q ss_pred EEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCch---------------------------------hhcCCC
Q 045704 70 VTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPD---------------------------------SLSKLV 116 (362)
Q Consensus 70 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---------------------------------~~~~l~ 116 (362)
++.|++++|.+++..+..+..+++|++|++++|.+.+..|. .|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 55555555555555555555555555555555555443332 455667
Q ss_pred CCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccC----------------CeeEeecCCCCCCCCC-CCCCCCCCE
Q 045704 117 RRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQG----------------PRLEIRQNSISSEFPY-LGSLKSLSF 179 (362)
Q Consensus 117 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------~~l~l~~n~~~~~~~~-~~~l~~L~~ 179 (362)
+|++|++++|.+++..+..|.++++|++|++++|.+.. ..+++++|.+.+..|. +..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 77777777888888777788888888888888875321 2566777777777665 777888888
Q ss_pred EeCcccccCCCCCC-Ccc--cCCcEEEeeCCccCC--------------------------CCcccccCCCCCCEEEccC
Q 045704 180 LDASDNNITGKIPP-TFP--TSLVELSVRNNNLVG--------------------------NVPENFGDMEFLQVLDLSR 230 (362)
Q Consensus 180 L~l~~n~~~~~~~~-~l~--~~L~~L~l~~n~l~~--------------------------~~~~~l~~l~~L~~L~ls~ 230 (362)
|++++|.+.+.++. .+. ++|++|++++|++.+ ..|..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 88888877654442 332 566666666665432 3455566667777777777
Q ss_pred CcCCCcchhhhcCCCCCcEEEccCCCCCCCC---C----CCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccC
Q 045704 231 NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQ---V----PANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEH 303 (362)
Q Consensus 231 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~---l----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 303 (362)
|.+++..+..+..+++|++|++++|+++.+. + +..+..+++|++|++++|+++..++..|..+++|+.|++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 7777666666777777777777777766431 0 11256667777777777777765555677777777777777
Q ss_pred CcCccCCChhhhhc----eeecccccccccCChhhh-cCCCCCcEEEecCCCCCC
Q 045704 304 NKFIGMIPTQFALK----RLLWGGNYLFGPISGHLM-GMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 304 n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~l~~ 353 (362)
|++++.++..+... .|++++|++++..+..+. .+ ++|++|++++|++.+
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF-RNLTELDMRFNPFDC 623 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH-TTCSEEECTTCCCCB
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc-cccCEEEccCCCccc
Confidence 77776666554322 777777777776666565 55 577777777777764
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.2e-29 Score=253.17 Aligned_cols=290 Identities=20% Similarity=0.212 Sum_probs=202.6
Q ss_pred CeEEEEEecCCCCcccccccccCCCC--CCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLH--LPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
.+++.|+++++.+++..+..+.+++. |++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 56888999999999888888888755 9999999999998888899999999999999999999999999999999999
Q ss_pred EccCCcccC---------------------CeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCC--CCCcc----c
Q 045704 146 YLDNNDFQG---------------------PRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKI--PPTFP----T 197 (362)
Q Consensus 146 ~L~~n~l~~---------------------~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~l~----~ 197 (362)
++++|.... ..+++++|.+.+..+. +..+++|++|++++|.+.... ...+. +
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 998764321 1678889999888776 888888888888877543211 11111 3
Q ss_pred CCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcch-hhhcCCCCCcEEEccCC---------------------
Q 045704 198 SLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIF-SVLFDHPSLQQLTLSYN--------------------- 255 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n--------------------- 255 (362)
+|+.|++++|++.+..+.++..+++|++|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 55555555555555555555555555555555555543322 33444444444444444
Q ss_pred ---CCCCC-CCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChh--------hhh----cee
Q 045704 256 ---NFTSL-QVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQ--------FAL----KRL 319 (362)
Q Consensus 256 ---~l~~~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~----~~L 319 (362)
.+... .+|..+..+++|++|++++|.+++.++..+..+++|++|++++|++++..+.. +.. .+|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 43321 23556677778888888888888777777778888888888888777542211 111 277
Q ss_pred ecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCcc
Q 045704 320 LWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMF 358 (362)
Q Consensus 320 ~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~ 358 (362)
++++|+++...+..|..+ ++|++|++++|+++.+|...
T Consensus 542 ~L~~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDL-FELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp ECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTT
T ss_pred ECCCCCCCCCCHHHcccc-cCcceeECCCCCCCcCCHhH
Confidence 777777764333456667 57777777777777777654
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.6e-29 Score=228.96 Aligned_cols=260 Identities=18% Similarity=0.243 Sum_probs=154.3
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.+++++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+.++++|++|++++|.++...+ +.++++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 4556666666666654322 5666666666666666653 22 46666666666666666665432 55666666666
Q ss_pred ccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEE
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVL 226 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 226 (362)
+++|. ..+.++.+..+++|++|++++|.+.+..+..-.++|++|++++|.+.+. +. +..+++|+.|
T Consensus 139 l~~n~------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 204 (347)
T 4fmz_A 139 LGANH------------NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYF 204 (347)
T ss_dssp CTTCT------------TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEE
T ss_pred CCCCC------------CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc-cc-ccCCCcccee
Confidence 66553 2223334666667777777776665433311116677777777766532 22 5666666777
Q ss_pred EccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcC
Q 045704 227 DLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 227 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 306 (362)
++++|.+.+..+ +..+++|++|++++|.++.. +. +..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCC--cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCcc
Confidence 776666665443 55666677777777766643 22 55666677777777666653 3456666677777777766
Q ss_pred ccCCChhhhh----ceeecccccccccCChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 307 IGMIPTQFAL----KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 307 ~~~~~~~~~~----~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
++. +. +.. ..|++++|.+++..+..+..+ ++|++|++++|+++.+|.
T Consensus 278 ~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 278 SDI-SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCC-GG-GGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG
T ss_pred CCC-hh-hcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC
Confidence 654 21 211 166777776666666666666 567777777776666654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.1e-29 Score=230.16 Aligned_cols=260 Identities=18% Similarity=0.226 Sum_probs=216.8
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCc
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLE 143 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 143 (362)
+...++++.|++++|.+++. +.+.++++|++|++++|.+.+ ++. +..+++|++|++++|......+. +..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCc
Confidence 45678999999999999863 468999999999999999984 443 89999999999999976665444 89999999
Q ss_pred EEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCC
Q 045704 144 ELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFL 223 (362)
Q Consensus 144 ~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L 223 (362)
+|++++|.+.. .+.+..+++|++|++++|.+.+..+....++|+.|++++|.+.+..+ +..+++|
T Consensus 159 ~L~l~~~~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L 223 (347)
T 4fmz_A 159 YLTVTESKVKD-------------VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRL 223 (347)
T ss_dssp EEECCSSCCCC-------------CGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred EEEecCCCcCC-------------chhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcC
Confidence 99999887652 22267889999999999999854431112899999999999985433 8889999
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccC
Q 045704 224 QVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEH 303 (362)
Q Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 303 (362)
++|++++|.+++..+ +..+++|++|++++|.++.+ ..+..+++|++|++++|.+++. ..+..+++|+.|++++
T Consensus 224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 999999999987655 88999999999999999864 3577889999999999999985 4578899999999999
Q ss_pred CcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCC
Q 045704 304 NKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 304 n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~ 353 (362)
|++++..+..+... +|++++|.+++..| +..+ ++|++|++++|.|++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL-SKMDSADFANQVIKK 347 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGC-TTCSEESSSCC----
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC--hhhh-hccceeehhhhcccC
Confidence 99999888877653 99999999988666 7788 799999999999863
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-30 Score=236.81 Aligned_cols=252 Identities=20% Similarity=0.251 Sum_probs=197.6
Q ss_pred CCCCCCCC----CCCCCCCCCCCCCCcccceecCcC-----CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCC
Q 045704 32 PGSCLSLW----DFSVDPGDHLFSDRFTCGLRCDRI-----VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDN 102 (362)
Q Consensus 32 ~~~~l~~w----~~~~~~c~~~~~~~~~~g~~c~~~-----~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n 102 (362)
+.+.++.| +...++|.| .|+.|... .....+|+.|+++++.++ .+|..++++++|++|++++|
T Consensus 43 ~~~~~~~w~~~~~~~~~~~~~-------~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n 114 (328)
T 4fcg_A 43 RNRWHSAWRQANSNNPQIETR-------TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114 (328)
T ss_dssp CTTHHHHHHHHTTTCTTSCCS-------HHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS
T ss_pred chhhhhhhccccccccccccc-------CCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC
Confidence 44456778 455788999 89999531 113578999999999998 78888999999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-C---------C
Q 045704 103 SFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-L---------G 172 (362)
Q Consensus 103 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~---------~ 172 (362)
.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+ .+|. + .
T Consensus 115 ~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~------------~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT------------ELPEPLASTDASGEHQ 180 (328)
T ss_dssp CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC------------CCCSCSEEEC-CCCEE
T ss_pred Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc------------ccChhHhhccchhhhc
Confidence 999 88999999999999999999999 458889999999999999765432 2232 2 3
Q ss_pred CCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEE
Q 045704 173 SLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L 250 (362)
.+++|++|++++|.++ .+|..+. ++|++|++++|++. .+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 4778888888888877 5666665 77888888888877 455667777888888888877777777777778888888
Q ss_pred EccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCcc
Q 045704 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 251 ~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (362)
++++|.+.+ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 259 ~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp ECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred ECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 888877766 567777777788888888887777777778888888888777765543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.2e-29 Score=236.03 Aligned_cols=269 Identities=25% Similarity=0.304 Sum_probs=146.7
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 5678888888888775433 7778888888888888874433 7778888888888887777633 67777777777
Q ss_pred ccCCcccCC-------------------------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCc
Q 045704 147 LDNNDFQGP-------------------------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTF 195 (362)
Q Consensus 147 L~~n~l~~~-------------------------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 195 (362)
+++|.+... .+++++|.+.+. +.+..+++|++|++++|.+.+..+...
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccccc
Confidence 777765432 334444444332 224444555555555555543333111
Q ss_pred ccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEE
Q 045704 196 PTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVAL 275 (362)
Q Consensus 196 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L 275 (362)
.++|++|++++|++.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.++++ +. +..+++|++|
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L 292 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SP-LAGLTALTNL 292 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc--cc-ccCCCccCeE
Confidence 24555555555555421 234455555555555555554433 45555555555555555542 22 4445555555
Q ss_pred EccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhh--hceeecccccccccCChhhhcCCCCCcEEEecCCCCCC
Q 045704 276 ELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFA--LKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 276 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~ 353 (362)
++++|.+.+..+ +..+++|+.|++++|++++..|.... ..+|++++|.+++. ..+..+ ++|++|++++|+++.
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANL-TNINWLSAGHNQISD 367 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTC-TTCCEEECCSSCCCB
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccC-CCCCEEeCCCCccCc
Confidence 555555554322 44555555555555555544431100 01444444444432 233344 344444444444443
Q ss_pred C
Q 045704 354 C 354 (362)
Q Consensus 354 ~ 354 (362)
+
T Consensus 368 ~ 368 (466)
T 1o6v_A 368 L 368 (466)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.3e-30 Score=249.49 Aligned_cols=138 Identities=24% Similarity=0.283 Sum_probs=118.5
Q ss_pred ccCCCCCCEEEccCCcCCCcch-hhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCC-CCChhhhcCCC
Q 045704 217 FGDMEFLQVLDLSRNKLSGTIF-SVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELG-GFLPAYLASMP 294 (362)
Q Consensus 217 l~~l~~L~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~ 294 (362)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+. +.+|..+..++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 6667777777777777776555 567889999999999999987 45778889999999999999997 56788899999
Q ss_pred CCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCC-CCC
Q 045704 295 NLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM-CPE 356 (362)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~-~P~ 356 (362)
+|+.|++++|++++..|..+... +|++++|++++..+..+..+ ++|++|++++|+++. +|.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCCCTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc-cCCcEEEecCCcccCCCcc
Confidence 99999999999999988777543 99999999999888889999 799999999999984 443
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-28 Score=223.98 Aligned_cols=246 Identities=21% Similarity=0.259 Sum_probs=209.5
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCc
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLE 143 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 143 (362)
+...+++++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 446788999999999999888999999999999999999998 5665554 7999999999999999888999999999
Q ss_pred EEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCC
Q 045704 144 ELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEF 222 (362)
Q Consensus 144 ~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~ 222 (362)
+|++++|.+... +..+. +..+++|++|++++|.++ .+|..+.++|++|++++|++.+..+..+.++++
T Consensus 149 ~L~l~~n~l~~~----------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 149 VVELGTNPLKSS----------GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp EEECCSSCCCGG----------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred EEECCCCcCCcc----------CcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 999998877421 12333 778999999999999998 467666699999999999999888899999999
Q ss_pred CCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcC------CCCC
Q 045704 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLAS------MPNL 296 (362)
Q Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L 296 (362)
|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.+
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 999999999999888888999999999999999999 45888899999999999999999877776654 3789
Q ss_pred CeEeccCCcCcc--CCChhhhhc----eeeccccc
Q 045704 297 SALSLEHNKFIG--MIPTQFALK----RLLWGGNY 325 (362)
Q Consensus 297 ~~L~L~~n~l~~--~~~~~~~~~----~L~l~~N~ 325 (362)
+.+++++|++.. ..|..+... .+++++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999874 455555532 88988885
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=220.04 Aligned_cols=260 Identities=20% Similarity=0.177 Sum_probs=217.7
Q ss_pred ceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhh
Q 045704 57 GLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASV 136 (362)
Q Consensus 57 g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 136 (362)
++.|.. ...+.++.++++++. +|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|
T Consensus 5 ~C~C~~-----~~~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 76 (285)
T 1ozn_A 5 ACVCYN-----EPKVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76 (285)
T ss_dssp TCEEEC-----SSSCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CceECC-----CCCeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc
Confidence 555644 233677788887763 45433 4689999999999997777789999999999999999999889999
Q ss_pred cCCCCCcEEEccCCc-ccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCC
Q 045704 137 GSLSQLEELYLDNND-FQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGN 212 (362)
Q Consensus 137 ~~l~~L~~L~L~~n~-l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~ 212 (362)
.++++|++|++++|. +. ...+. +..+++|++|++++|.+++..+..+. ++|++|++++|++.+.
T Consensus 77 ~~l~~L~~L~l~~n~~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLR------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp TTCTTCCEEECCSCTTCC------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCCCEEeCCCCCCcc------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 999999999999775 43 33344 88899999999999999977677666 8999999999999977
Q ss_pred CcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcC
Q 045704 213 VPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLAS 292 (362)
Q Consensus 213 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 292 (362)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++.++..+..
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-CHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 777799999999999999999988877899999999999999999874 4778888999999999999999988888999
Q ss_pred CCCCCeEeccCCcCccCCChhhhh---ceeecccccccccCChhhhcC
Q 045704 293 MPNLSALSLEHNKFIGMIPTQFAL---KRLLWGGNYLFGPISGHLMGM 337 (362)
Q Consensus 293 l~~L~~L~L~~n~l~~~~~~~~~~---~~L~l~~N~l~~~~~~~~~~~ 337 (362)
+++|+.|++++|++....+..... ..+....+.+....|..+.+.
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCc
Confidence 999999999999999766543211 156677788888888887653
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.7e-28 Score=234.16 Aligned_cols=274 Identities=23% Similarity=0.310 Sum_probs=228.4
Q ss_pred CCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccch----------
Q 045704 64 VSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIH---------- 133 (362)
Q Consensus 64 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---------- 133 (362)
+....++++|++++|.+++..+ +.++++|++|++++|.+.+. +. +.++++|++|++++|.+.+...
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEe
Confidence 3456889999999999986554 88999999999999999854 33 8889999999999988776421
Q ss_pred ---------hhhcCCCCCcEEEccCCcccCC----------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCC
Q 045704 134 ---------ASVGSLSQLEELYLDNNDFQGP----------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPT 194 (362)
Q Consensus 134 ---------~~~~~l~~L~~L~L~~n~l~~~----------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 194 (362)
..+.++++|++|++++|.+... .+++++|.+.+..+ +..+++|++|++++|.+++. + .
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~ 238 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G-T 238 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-G
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h-h
Confidence 1266788899999999987654 78888998887665 77889999999999998853 3 3
Q ss_pred cc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCC
Q 045704 195 FP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKL 272 (362)
Q Consensus 195 l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L 272 (362)
+. ++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|+++++ +. +..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SP-ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GG-GGGCTTC
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--hh-hcCCCCC
Confidence 33 899999999999986543 8899999999999999987655 78899999999999999874 33 6788999
Q ss_pred CEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecC
Q 045704 273 VALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVD 348 (362)
Q Consensus 273 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~ 348 (362)
+.|++++|++.+..+ +..+++|+.|++++|++++. + .+... .|++++|++++..| +..+ ++|+.|++++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~ 384 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANL-TRITQLGLND 384 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCBCGG--GTTC-TTCCEEECCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hhccCCCCCEEeCCCCccCccch--hhcC-CCCCEEeccC
Confidence 999999999998665 67899999999999999986 2 23222 99999999998877 7888 7999999999
Q ss_pred CCCCCCCCcc
Q 045704 349 NCLYMCPEMF 358 (362)
Q Consensus 349 N~l~~~P~~~ 358 (362)
|.++.+|..+
T Consensus 385 n~~~~~p~~~ 394 (466)
T 1o6v_A 385 QAWTNAPVNY 394 (466)
T ss_dssp EEEECCCBCC
T ss_pred CcccCCchhh
Confidence 9999877654
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9e-29 Score=244.37 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=127.9
Q ss_pred CCcEEEeeCCccCCCC-cccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEE
Q 045704 198 SLVELSVRNNNLVGNV-PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276 (362)
Q Consensus 198 ~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~ 276 (362)
+++.+++..+...... ...+..+++++.++++.|.+.+..+..+..+++++.|++++|.+.....|..+..+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 3444444444433222 234667788889999999988888888888999999999999765434577888899999999
Q ss_pred ccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 277 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
+++|++++.+|..|.++++|++|+|++|++++..+..+... +|++++|++++..|..+..+.++|++|+|++|++.
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999889999999999999999999999988877643 89999999999999999887458999999999997
Q ss_pred C
Q 045704 353 M 353 (362)
Q Consensus 353 ~ 353 (362)
+
T Consensus 581 C 581 (635)
T 4g8a_A 581 C 581 (635)
T ss_dssp C
T ss_pred c
Confidence 4
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.6e-29 Score=242.21 Aligned_cols=181 Identities=19% Similarity=0.164 Sum_probs=142.3
Q ss_pred cCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC
Q 045704 76 DPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP 155 (362)
Q Consensus 76 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 155 (362)
++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|.+++.
T Consensus 13 ~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 13 RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 455665 4565543 7899999999999988888999999999999999999999889999999999999999998765
Q ss_pred ------------eeEeecCCCCCC-CC-CCCCCCCCCEEeCcccccCCCCC-CCcc--cCCcEEEeeCCccCCCCccccc
Q 045704 156 ------------RLEIRQNSISSE-FP-YLGSLKSLSFLDASDNNITGKIP-PTFP--TSLVELSVRNNNLVGNVPENFG 218 (362)
Q Consensus 156 ------------~l~l~~n~~~~~-~~-~~~~l~~L~~L~l~~n~~~~~~~-~~l~--~~L~~L~l~~n~l~~~~~~~l~ 218 (362)
.+++++|.+.+. .| .+.++++|++|++++|...+.++ ..+. ++|++|++++|++.+..|..+.
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 788889988863 33 48899999999999998444444 4455 8899999999999887888887
Q ss_pred CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCC
Q 045704 219 DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTS 259 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~ 259 (362)
.+++|++|++++|.+.......+..+++|++|++++|++++
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 77777777777766654333333456666777776666654
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2e-28 Score=228.40 Aligned_cols=270 Identities=21% Similarity=0.223 Sum_probs=213.8
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|+++++.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 57899999999999887777899999999999999999987788899999999999999999987766788999999999
Q ss_pred ccCCcccCC------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCc
Q 045704 147 LDNNDFQGP------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVP 214 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~ 214 (362)
+++|.+... .+++++|.+.+. .+..+++|+.+++++|.+++.. ....+++|++++|.+... +
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~-~ 221 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVV-R 221 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEE-E
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccccC---CCCcceEEECCCCeeeec-c
Confidence 999987654 678888888765 2566788999999998876421 126788999998888743 3
Q ss_pred ccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC
Q 045704 215 ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP 294 (362)
Q Consensus 215 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 294 (362)
. ...++|++|++++|.+++. ..+..+++|++|++++|.+++. .|..+..+++|++|++++|++++ ++..+..++
T Consensus 222 ~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 222 G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 3 2347888999999988764 4677888899999999988863 46677888889999999998887 455567788
Q ss_pred CCCeEeccCCcCccCCChhhhh---ceeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 295 NLSALSLEHNKFIGMIPTQFAL---KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~---~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
+|+.|++++|++++.++..... .+|++++|.+++. + +..+ ++|++|++++|+++
T Consensus 296 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~-~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTH-HTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT-CCCSEEECCSSCEE
T ss_pred CCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhh-ccCCEEEcCCCCcc
Confidence 8999999999888554332221 2889999988654 3 5556 68889999998875
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.7e-28 Score=222.65 Aligned_cols=252 Identities=23% Similarity=0.260 Sum_probs=214.6
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.++.. |..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI-PPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC-CSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc-Ccccc--ccCCEEE
Confidence 46799999999999988788999999999999999999988889999999999999999999865 44333 7899999
Q ss_pred ccCCcccCC------------eeEeecCCCCC--CCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCC
Q 045704 147 LDNNDFQGP------------RLEIRQNSISS--EFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVG 211 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~--~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~ 211 (362)
+++|.+... .+++++|.+.. ..+. +..+ +|++|++++|.+++ +|..+.++|++|++++|++.+
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCc
Confidence 999987654 67888888863 4455 7777 99999999999984 777777899999999999998
Q ss_pred CCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhc
Q 045704 212 NVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLA 291 (362)
Q Consensus 212 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 291 (362)
..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 88889999999999999999999988888999999999999999999 5588889999999999999999987777765
Q ss_pred C------CCCCCeEeccCCcCc--cCCChhhhhc----eeeccccc
Q 045704 292 S------MPNLSALSLEHNKFI--GMIPTQFALK----RLLWGGNY 325 (362)
Q Consensus 292 ~------l~~L~~L~L~~n~l~--~~~~~~~~~~----~L~l~~N~ 325 (362)
. .++|+.+++++|++. +..|..+... .+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5 367999999999988 5666666543 78888874
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=8.8e-28 Score=228.23 Aligned_cols=264 Identities=20% Similarity=0.163 Sum_probs=152.9
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
..++++.|++++|.+++. + ++.+++|++|++++|.+++. + +.++++|++|++++|++++. + ++++++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE
Confidence 345666666666666653 2 56666666666666666643 2 56666666666666666654 2 5666666666
Q ss_pred EccCCcccCC---------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCccc
Q 045704 146 YLDNNDFQGP---------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPEN 216 (362)
Q Consensus 146 ~L~~n~l~~~---------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 216 (362)
++++|.+++. .++++.|...+.+ .+..+++|++|++++|.+++ +|..-.++|+.|++++|++.+. .
T Consensus 133 ~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~---~ 207 (457)
T 3bz5_A 133 NCARNTLTEIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL---D 207 (457)
T ss_dssp ECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC---C
T ss_pred ECCCCccceeccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee---c
Confidence 6666665543 3444444333322 24555666666666666654 3311115666666666666543 2
Q ss_pred ccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCC----------EEEccCCcCCCCC
Q 045704 217 FGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV----------ALELSYNELGGFL 286 (362)
Q Consensus 217 l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~----------~L~L~~n~l~~~~ 286 (362)
+..+++|++|++++|.+++. | +..+++|+.|++++|++++++ .+.+++|+ .+++++|.+.+.+
T Consensus 208 l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcc
Confidence 55566666666666666652 2 555666666666666666532 12223333 3333333333333
Q ss_pred hhhhcCCCCCCeEeccCCcCccCCChhhh------------hceeecccccccccCChhhhcCCCCCcEEEecCCCCCCC
Q 045704 287 PAYLASMPNLSALSLEHNKFIGMIPTQFA------------LKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMC 354 (362)
Q Consensus 287 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~ 354 (362)
| +..+++|+.|++++|+..+.+|.... ..+|++++|++++. + +..+ ++|+.|++++|+|+.+
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l-~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHN-TKLKSLSCVNAHIQDF 354 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTC-TTCSEEECCSSCCCBC
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccC-CcCcEEECCCCCCCCc
Confidence 3 24557777777777776655543211 11788888888773 3 7777 6888999999888876
Q ss_pred CC
Q 045704 355 PE 356 (362)
Q Consensus 355 P~ 356 (362)
|.
T Consensus 355 ~~ 356 (457)
T 3bz5_A 355 SS 356 (457)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=228.53 Aligned_cols=253 Identities=17% Similarity=0.137 Sum_probs=209.7
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 45899999999999987777899999999999999999987788899999999999999999998777799999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCC--CCCCCCCCCEEeCcccc-cCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFP--YLGSLKSLSFLDASDNN-ITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDME 221 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~--~~~~l~~L~~L~l~~n~-~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~ 221 (362)
+++|.+. +..+ .+..+++|++|++++|. +....+..+. ++|++|++++|++.+..|..+..++
T Consensus 131 L~~n~l~------------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 131 LLGNPYK------------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp CTTCCCS------------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCCCCCc------------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 9988765 2333 37889999999999994 6655556665 8999999999999988899999999
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCC--CcCCCCCCCEEEccCCcCCC----CChhhhcCCCC
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA--NMGLTSKLVALELSYNELGG----FLPAYLASMPN 295 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~--~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~ 295 (362)
+|++|++++|.+.......+..+++|+.|++++|.+++..... .....+.++.++++++.+.+ .+|..+..+++
T Consensus 199 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 9999999999998666566667899999999999998753221 12345678889999888876 35677888999
Q ss_pred CCeEeccCCcCccCCChhhhhc----eeecccccccccCC
Q 045704 296 LSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPIS 331 (362)
Q Consensus 296 L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~ 331 (362)
|+.|++++|+++...+..+... +|++++|.+++..|
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999986555444332 89999999987665
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3e-28 Score=239.45 Aligned_cols=270 Identities=21% Similarity=0.210 Sum_probs=211.6
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
..++++.|++++|.+++..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++.++..|.++++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 35789999999999998888899999999999999999998888889999999999999999998877778999999999
Q ss_pred EccCCcccCC------------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCC
Q 045704 146 YLDNNDFQGP------------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNV 213 (362)
Q Consensus 146 ~L~~n~l~~~------------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 213 (362)
++++|.+.+. .+++++|.+.+.. +..+++|+.|++++|.+++.. ....|+.|++++|.+...
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~- 226 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA---IPIAVEELDASHNSINVV- 226 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCEE-
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc---CCchhheeeccCCccccc-
Confidence 9999987654 6888899888753 556788999999988876421 225788888888887632
Q ss_pred cccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCC
Q 045704 214 PENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM 293 (362)
Q Consensus 214 ~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 293 (362)
+..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+++ ..|..++.+++|++|++++|.+++ +|..+..+
T Consensus 227 ~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 227 RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC-CCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 2222 35788888888888753 557778888888888888876 346677778888888888888877 45556677
Q ss_pred CCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 294 PNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 294 ~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
++|+.|++++|++++. |..+... .|++++|.+++.. +..+ ++|+.|+|++|+++
T Consensus 301 ~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~-~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 301 PTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTH-HTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTT-CCCSEEECCSSCEE
T ss_pred CCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhc-CCCCEEEeeCCCCC
Confidence 8888888888888754 3333221 8888888886542 4455 68888888888865
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.5e-27 Score=235.70 Aligned_cols=291 Identities=22% Similarity=0.202 Sum_probs=208.4
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
+..+++|+|++|.+++..+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 45799999999999987788999999999999999999977778899999999999999999999888999999999999
Q ss_pred ccCCcccCC------------eeEeecCCCCCC-CCC-CCCCCCCCEEeCcccccCCCCCCCcc--c-------------
Q 045704 147 LDNNDFQGP------------RLEIRQNSISSE-FPY-LGSLKSLSFLDASDNNITGKIPPTFP--T------------- 197 (362)
Q Consensus 147 L~~n~l~~~------------~l~l~~n~~~~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~------------- 197 (362)
+++|.++.. .+++++|.+.+. .|. +..+++|++|++++|.+++..+..+. .
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999987754 678888888764 344 77889999999998877643332211 0
Q ss_pred --------------------------------------------------------------------------------
Q 045704 198 -------------------------------------------------------------------------------- 197 (362)
Q Consensus 198 -------------------------------------------------------------------------------- 197 (362)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred --------------------------------------CCcEEEeeCCccCCCCc-------------------ccccCC
Q 045704 198 --------------------------------------SLVELSVRNNNLVGNVP-------------------ENFGDM 220 (362)
Q Consensus 198 --------------------------------------~L~~L~l~~n~l~~~~~-------------------~~l~~l 220 (362)
.++.|++.+|.+....+ .....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 11112222222111000 001123
Q ss_pred CCCCEEEccCCcCCCc--ch------------------------------------------------hhhcCCCCCcEE
Q 045704 221 EFLQVLDLSRNKLSGT--IF------------------------------------------------SVLFDHPSLQQL 250 (362)
Q Consensus 221 ~~L~~L~ls~n~l~~~--~~------------------------------------------------~~l~~~~~L~~L 250 (362)
++|+.|++++|.+... .+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 4455555555443210 00 111222333344
Q ss_pred EccCCCCCCCCCCCCcCCCCCCCEEEccCCcC-CCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeeccccc
Q 045704 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNEL-GGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNY 325 (362)
Q Consensus 251 ~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~ 325 (362)
++++|.+.. ..+..+..++.++.|++++|.+ .+..|..+..+++|++|+|++|++++.+|..+... +|+|++|+
T Consensus 451 ~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 451 DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp ECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccc-ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 444444433 2234455667888888888864 34567788899999999999999999988877643 99999999
Q ss_pred ccccCChhhhcCCCCCcEEEecCCCCCCCC-Cccc
Q 045704 326 LFGPISGHLMGMKPGFANVSLVDNCLYMCP-EMFF 359 (362)
Q Consensus 326 l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P-~~~~ 359 (362)
+++..|..+..+ ++|++|+|++|+|+.+| +.+.
T Consensus 530 l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 530 FFSLDTFPYKCL-NSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp CCBCCCGGGTTC-TTCCEEECTTSCCCBCCSSCTT
T ss_pred CCCCChhHHhCC-CCCCEEECCCCcCCCCCHHHHH
Confidence 999888999999 79999999999998774 4443
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.5e-28 Score=220.26 Aligned_cols=268 Identities=24% Similarity=0.235 Sum_probs=214.9
Q ss_pred cceecCcCC------CCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCC--CchhhcCCCCCCEEeCcCCc
Q 045704 56 CGLRCDRIV------SGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGS--VPDSLSKLVRRKRLGLSGNS 127 (362)
Q Consensus 56 ~g~~c~~~~------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~ 127 (362)
.++.|.... ...++++.|+++++.++...+..+.++++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 567775411 2245789999999999855455678999999999999998732 36777889999999999999
Q ss_pred CCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCC--CCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEE
Q 045704 128 FKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFP--YLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELS 203 (362)
Q Consensus 128 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~ 203 (362)
++.. |..+.++++|++|++++|.+.. ..+ .+..+++|++|++++|.+.+..+..+. ++|++|+
T Consensus 90 i~~l-~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 90 VITM-SSNFLGLEQLEHLDFQHSNLKQ------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp EEEE-EEEEETCTTCCEEECTTSEEES------------STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccC-hhhcCCCCCCCEEECCCCcccc------------cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 8865 5668889999999999887652 222 377889999999999998877777666 8999999
Q ss_pred eeCCccCC-CCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcC
Q 045704 204 VRNNNLVG-NVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNEL 282 (362)
Q Consensus 204 l~~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l 282 (362)
+++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++++. +..+..+++|++|++++|.+
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCC
Confidence 99999876 57788899999999999999999888888999999999999999998642 34577889999999999999
Q ss_pred CCCChhhhcCCC-CCCeEeccCCcCccCCCh-----hhhhc-eeecccccccccCChhhhcC
Q 045704 283 GGFLPAYLASMP-NLSALSLEHNKFIGMIPT-----QFALK-RLLWGGNYLFGPISGHLMGM 337 (362)
Q Consensus 283 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-----~~~~~-~L~l~~N~l~~~~~~~~~~~ 337 (362)
.+..+..+..++ +|++|++++|++.+..+. ++... .+....+.+....|..+.+.
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred cccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 998888888885 899999999999876542 22222 55666777877888877665
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.7e-28 Score=218.43 Aligned_cols=243 Identities=19% Similarity=0.181 Sum_probs=194.1
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCcc--chhhhcCCCCCcEEEcc
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCL--IHASVGSLSQLEELYLD 148 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~ 148 (362)
+.++.++++++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 36888888876 4555443 6899999999999955555689999999999999999854 35677889999999999
Q ss_pred CCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCC-CCcc--cCCcEEEeeCCccCCCCcccccCCCCCCE
Q 045704 149 NNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIP-PTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQV 225 (362)
Q Consensus 149 ~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 225 (362)
+|.+... .+.+..+++|++|++++|.+++..+ ..+. ++|++|++++|.+.+..+..+.++++|++
T Consensus 87 ~n~i~~l------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 87 FNGVITM------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSEEEE------------EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred CCccccC------------hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 9887621 1226678999999999999886544 3444 88999999999988777888888899999
Q ss_pred EEccCCcCCC-cchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCC
Q 045704 226 LDLSRNKLSG-TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304 (362)
Q Consensus 226 L~ls~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 304 (362)
|++++|.+++ ..|..+..+++|++|++++|+++++ .|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 9999998876 5677788889999999999988863 3667778888999999999988877777888889999999999
Q ss_pred cCccCCChhhhh-----ceeeccccccccc
Q 045704 305 KFIGMIPTQFAL-----KRLLWGGNYLFGP 329 (362)
Q Consensus 305 ~l~~~~~~~~~~-----~~L~l~~N~l~~~ 329 (362)
++++..|..+.. .+|++++|.+++.
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 888877765432 2788888888754
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-27 Score=225.43 Aligned_cols=230 Identities=22% Similarity=0.227 Sum_probs=201.4
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 46799999999999998899999999999999999999988888999999999999999999998888899999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCC-Ccc--cCCcEEEeeCCccCCCCcccccCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPP-TFP--TSLVELSVRNNNLVGNVPENFGDMEF 222 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~ 222 (362)
+++|.+. +..+. +..+++|++|++++|...+.++. .+. ++|++|++++|++.+ +| .+..+++
T Consensus 154 L~~N~l~------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 219 (452)
T 3zyi_A 154 LRNNPIE------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVG 219 (452)
T ss_dssp CCSCCCC------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTT
T ss_pred CCCCCcc------------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccccc
Confidence 9988765 23333 88899999999999544334444 344 899999999999984 43 5888999
Q ss_pred CCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEecc
Q 045704 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLE 302 (362)
Q Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 302 (362)
|++|++++|.+++..+..+..+++|+.|++++|+++.+ .+..+..+++|+.|++++|++++.++..+..+++|+.|+++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 99999999999999999999999999999999999874 36678889999999999999999888888999999999999
Q ss_pred CCcCccCCC
Q 045704 303 HNKFIGMIP 311 (362)
Q Consensus 303 ~n~l~~~~~ 311 (362)
+|++.....
T Consensus 299 ~Np~~CdC~ 307 (452)
T 3zyi_A 299 HNPWNCDCD 307 (452)
T ss_dssp SSCEECSTT
T ss_pred CCCcCCCCC
Confidence 999876543
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=223.00 Aligned_cols=229 Identities=24% Similarity=0.249 Sum_probs=198.4
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46789999999999988888999999999999999999977788899999999999999999988888899999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCC-Ccc--cCCcEEEeeCCccCCCCcccccCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPP-TFP--TSLVELSVRNNNLVGNVPENFGDMEF 222 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~ 222 (362)
+++|.+. +..+. +..+++|++|++++|...+.++. .+. ++|++|++++|++. .+| .+..+++
T Consensus 143 L~~N~i~------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~ 208 (440)
T 3zyj_A 143 LRNNPIE------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIK 208 (440)
T ss_dssp CCSCCCC------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSS
T ss_pred CCCCccc------------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcc
Confidence 9988765 23333 88899999999999554334443 444 89999999999998 454 4788999
Q ss_pred CCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEecc
Q 045704 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLE 302 (362)
Q Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 302 (362)
|++|++++|.+++..+..+..+++|+.|++++|+++.+ .+..+..+++|++|++++|++++.++..+..+++|+.|+++
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 99999999999988899999999999999999999974 36678889999999999999999888889999999999999
Q ss_pred CCcCccCC
Q 045704 303 HNKFIGMI 310 (362)
Q Consensus 303 ~n~l~~~~ 310 (362)
+|++....
T Consensus 288 ~Np~~CdC 295 (440)
T 3zyj_A 288 HNPWNCNC 295 (440)
T ss_dssp SSCEECSS
T ss_pred CCCccCCC
Confidence 99987654
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.8e-28 Score=219.48 Aligned_cols=235 Identities=14% Similarity=0.182 Sum_probs=174.0
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCC
Q 045704 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFP 169 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~ 169 (362)
..+++++|++++|.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-------------~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------------ALP 143 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-------------CCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-------------cCc
Confidence 3578999999999998 78888999999999999999999 56888999999999999987764 234
Q ss_pred C-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 170 Y-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 170 ~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
. +..+++|++|++++|...+.+|..+.. . ..+..+.++++|++|++++|.++ .+|..+..+++|+
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLAS----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEE----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhh----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC
Confidence 3 888899999999998887777765521 0 11233455667777777777766 4555566677777
Q ss_pred EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccc
Q 045704 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGN 324 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N 324 (362)
+|++++|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+... +|++++|
T Consensus 210 ~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 210 SLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred EEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 77777777764 35556666777777777777766666667777777777777777777776655443 6777777
Q ss_pred cccccCChhhhcCCCCCcEEEecCCCCCCCCC
Q 045704 325 YLFGPISGHLMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 325 ~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
++.+.+|..+..+ ++|+.+++..|.+..++.
T Consensus 288 ~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 288 VNLSRLPSLIAQL-PANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp TTCCCCCGGGGGS-CTTCEEECCGGGSCC---
T ss_pred CchhhccHHHhhc-cCceEEeCCHHHHHHHhh
Confidence 7778888888888 688999888887766554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=222.85 Aligned_cols=262 Identities=21% Similarity=0.203 Sum_probs=212.3
Q ss_pred cCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC
Q 045704 76 DPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP 155 (362)
Q Consensus 76 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 155 (362)
++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-- 113 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-- 113 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC--
Confidence 556665 4565444 58999999999999766668999999999999999999998889999999999999988765
Q ss_pred eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCC-CCcc--cCCcEEEeeCCc-cCCCCcccccCCCCCCEEEccC
Q 045704 156 RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIP-PTFP--TSLVELSVRNNN-LVGNVPENFGDMEFLQVLDLSR 230 (362)
Q Consensus 156 ~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~l~--~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~ 230 (362)
+..+. +..+++|++|++++|.++.... ..+. ++|++|++++|. +....+..+.++++|++|++++
T Consensus 114 ----------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 114 ----------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ----------SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ----------cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 23333 7889999999999999985333 2454 899999999994 6656677899999999999999
Q ss_pred CcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCC-CcCCCCCCCEEEccCCcCCCCChhhh---cCCCCCCeEeccCCcC
Q 045704 231 NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA-NMGLTSKLVALELSYNELGGFLPAYL---ASMPNLSALSLEHNKF 306 (362)
Q Consensus 231 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l 306 (362)
|.+++..+..+..+++|++|++++|.++.+ |. .+..+++|++|++++|.+++..+..+ ...+.++.++++++.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTH--HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccc--hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 999988899999999999999999999753 43 34457899999999999998654433 3467889999999988
Q ss_pred ccC----CChhhhhc----eeecccccccccCChh-hhcCCCCCcEEEecCCCCCCCCC
Q 045704 307 IGM----IPTQFALK----RLLWGGNYLFGPISGH-LMGMKPGFANVSLVDNCLYMCPE 356 (362)
Q Consensus 307 ~~~----~~~~~~~~----~L~l~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~l~~~P~ 356 (362)
.+. +|..+... +|++++|+++ .+|.. +..+ ++|++|++++|+++.-++
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l-~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL-TSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSCBCCCHH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC-CCCCEEEeeCCCccCcCC
Confidence 763 44444332 9999999998 56666 4788 799999999999985543
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=7.7e-27 Score=221.74 Aligned_cols=272 Identities=20% Similarity=0.164 Sum_probs=199.4
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|+++++.+++. | .++.+++|++|++++|.+++. | +..+++|++|++++|.+++. + ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 47788888888888764 4 678888888888888888853 3 77888888888888888876 3 77888888888
Q ss_pred ccCCcccCC---------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccc
Q 045704 147 LDNNDFQGP---------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENF 217 (362)
Q Consensus 147 L~~n~l~~~---------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l 217 (362)
+++|.+++. .+++++|.+++. .+..+++|++|++++|...+.++..-.++|++|++++|++++ ++ +
T Consensus 113 L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l 187 (457)
T 3bz5_A 113 CDTNKLTKLDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--V 187 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred CCCCcCCeecCCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--c
Confidence 888887654 677778888774 377788888888888855444432222788888888888875 44 7
Q ss_pred cCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC---
Q 045704 218 GDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP--- 294 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--- 294 (362)
..+++|++|++++|.+++. .+..+++|++|++++|+++++ | ++.+++|++|++++|++++.++..+..+.
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~ 260 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEe
Confidence 7888888888888888765 267788888888888888864 4 66778888888888888886554444443
Q ss_pred ----CCCeEeccCCcCccCCChhh-h-hceeecccccccccCChh--------hhcCCCCCcEEEecCCCCCCCCCcccC
Q 045704 295 ----NLSALSLEHNKFIGMIPTQF-A-LKRLLWGGNYLFGPISGH--------LMGMKPGFANVSLVDNCLYMCPEMFFF 360 (362)
Q Consensus 295 ----~L~~L~L~~n~l~~~~~~~~-~-~~~L~l~~N~l~~~~~~~--------~~~~~~~L~~L~L~~N~l~~~P~~~~~ 360 (362)
+|+.+++++|++.+.+|... . ...|++++|...+.+|.. +..+ ++|++|++++|+|+.+| +..
T Consensus 261 l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~-~~L~~L~L~~N~l~~l~--l~~ 337 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN-PKLVYLYLNNTELTELD--VSH 337 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC-TTCCEEECTTCCCSCCC--CTT
T ss_pred ccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc-ccCCEEECCCCcccccc--ccc
Confidence 45566666666665555321 1 127888888776666542 4445 57888888888888775 544
Q ss_pred C
Q 045704 361 C 361 (362)
Q Consensus 361 ~ 361 (362)
|
T Consensus 338 l 338 (457)
T 3bz5_A 338 N 338 (457)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-26 Score=220.42 Aligned_cols=239 Identities=19% Similarity=0.151 Sum_probs=161.9
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
..++..+.+++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 45666777766 3555443 68999999999999888889999999999999999999998899999999999999977
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCc-cCCCCcccccCCCCCCEE
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNN-LVGNVPENFGDMEFLQVL 226 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 226 (362)
.++ +..+. +..+++|++|++++|.++...+..+. ++|++|++++|. +....+..+.++++|++|
T Consensus 134 ~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 134 WLT------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CCS------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cCC------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 765 33444 77888899999988888754444444 666667666633 332223345666666666
Q ss_pred EccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcC
Q 045704 227 DLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 227 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 306 (362)
++++|.+++. | .+..+++|++|++++|.++++ .|..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|++
T Consensus 202 ~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 202 NLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp ECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccccc-c-cccccccccEEECcCCcCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 6666666543 2 245566666666666666652 244555666666666666666665566666666666666666666
Q ss_pred ccCCChhhhhc----eeeccccccc
Q 045704 307 IGMIPTQFALK----RLLWGGNYLF 327 (362)
Q Consensus 307 ~~~~~~~~~~~----~L~l~~N~l~ 327 (362)
++..+..+... .|++++|.+.
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccChHHhccccCCCEEEccCCCcC
Confidence 65544433221 4555555443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.4e-26 Score=218.18 Aligned_cols=265 Identities=27% Similarity=0.287 Sum_probs=184.9
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
+++++|++++|.+++ +| .++++++|++|++++|.+++ +|..+ ++|++|++++|.+++. | .+.++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEEC
Confidence 578888888888876 56 58888889999999988884 55433 5889999999988875 5 5889999999999
Q ss_pred cCCcccCC--------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccC
Q 045704 148 DNNDFQGP--------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGD 219 (362)
Q Consensus 148 ~~n~l~~~--------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~ 219 (362)
++|.+++. .+++++|.+. .+|.+..+++|++|++++|.+++ +|. ..++|++|++++|++.+ +|..
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~-~~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD-LPPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS-CCTTCCEEECCSSCCSC-CCCC---
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc-cccccCEEECCCCcccc-cCcc---
Confidence 99998763 7888899888 45578899999999999999884 454 33789999999999885 5543
Q ss_pred CCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeE
Q 045704 220 MEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSAL 299 (362)
Q Consensus 220 l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 299 (362)
+++|++|++++|.+++... -.++|++|++++|+++++ +. ..++|++|++++|++++ +|.. +++|+.|
T Consensus 276 ~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i--~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL--CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE--CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc--cC---CcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 4789999999999886321 126788888888888753 32 22578899999998887 4432 5788899
Q ss_pred eccCCcCccCCChhhhh-ceeecccccccc--cCChhhhcCC------------CCCcEEEecCCCCC---CCCCcccCC
Q 045704 300 SLEHNKFIGMIPTQFAL-KRLLWGGNYLFG--PISGHLMGMK------------PGFANVSLVDNCLY---MCPEMFFFC 361 (362)
Q Consensus 300 ~L~~n~l~~~~~~~~~~-~~L~l~~N~l~~--~~~~~~~~~~------------~~L~~L~L~~N~l~---~~P~~~~~~ 361 (362)
++++|++++... .... .+|++++|++++ .+|..+..+. ++|++|++++|+++ .+|.++..+
T Consensus 343 ~L~~N~l~~lp~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 343 IASFNHLAEVPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred ECCCCccccccc-hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 999998886444 2222 288999998888 7777776551 48999999999997 678777654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=218.67 Aligned_cols=239 Identities=18% Similarity=0.136 Sum_probs=178.9
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
..++..+.+++ .+|..+. ++++.|+|++|.+.+..+..|.++++|++|+|++|.++...+.+|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45677777776 4565554 68999999999999888889999999999999999999998899999999999999987
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCc-cCCCCcccccCCCCCCEE
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNN-LVGNVPENFGDMEFLQVL 226 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 226 (362)
.++ +..+. +..+++|++|++++|.++...+..+. ++|++|++++|. +....+..|.++++|++|
T Consensus 123 ~l~------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 123 RLT------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCS------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred cCC------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 765 33443 78889999999999988855554554 778888887744 333333457777788888
Q ss_pred EccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcC
Q 045704 227 DLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 227 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 306 (362)
++++|.++.. | .+..+++|++|++++|+++.+ .|..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++
T Consensus 191 ~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 191 NLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred cCCCCcCccc-c-ccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 8888877644 2 356677777788877777763 355667777777777777777777777777777777777777777
Q ss_pred ccCCChhhhhc----eeeccccccc
Q 045704 307 IGMIPTQFALK----RLLWGGNYLF 327 (362)
Q Consensus 307 ~~~~~~~~~~~----~L~l~~N~l~ 327 (362)
++..+..+... .|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 76665554322 6666666654
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.6e-26 Score=226.30 Aligned_cols=279 Identities=26% Similarity=0.240 Sum_probs=216.5
Q ss_pred CCCCCCCCCCCCCCCCCC-CCcccceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhh
Q 045704 34 SCLSLWDFSVDPGDHLFS-DRFTCGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSL 112 (362)
Q Consensus 34 ~~l~~w~~~~~~c~~~~~-~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 112 (362)
..++.|..+.++|.|-.. ...+....|.. .+++.|++++++++ .+|..+. ++|++|++++|.++ .+|.
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~-----~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-- 78 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACLN-----NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-- 78 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH-----HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred HHHHHHHhcCCcchhccccccCcccccccC-----CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence 346677666777776100 00111223433 56899999999998 6677665 79999999999998 5665
Q ss_pred cCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC--------eeEeecCCCCCCCCCCCCCCCCCEEeCcc
Q 045704 113 SKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP--------RLEIRQNSISSEFPYLGSLKSLSFLDASD 184 (362)
Q Consensus 113 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~ 184 (362)
.+++|++|++++|+++.+ |. .+++|++|++++|.++.. .+++++|.+.+.++. +++|++|++++
T Consensus 79 -~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 150 (622)
T ss_dssp -CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred -cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence 578999999999999876 43 678999999999988763 678888888775442 47899999999
Q ss_pred cccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCC
Q 045704 185 NNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPA 264 (362)
Q Consensus 185 n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~ 264 (362)
|.+++ +|. ...+|+.|++++|.+.+ +| ..+++|+.|++++|.+++... ..++|+.|++++|.++.+ |.
T Consensus 151 N~l~~-l~~-~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l--~~ 218 (622)
T 3g06_A 151 NQLAS-LPA-LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL--PA 218 (622)
T ss_dssp SCCSC-CCC-CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CC
T ss_pred CcCCC-cCC-ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc--CC
Confidence 98884 443 33789999999999884 55 456889999999999986432 357899999999999854 54
Q ss_pred CcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhh-hceeecccccccccCChhhhcCCCCCcE
Q 045704 265 NMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFA-LKRLLWGGNYLFGPISGHLMGMKPGFAN 343 (362)
Q Consensus 265 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~L~l~~N~l~~~~~~~~~~~~~~L~~ 343 (362)
. +++|++|++++|.+++ +| ..+++|+.|++++|++++..+ ... ...|++++|+++ .+|..+..+ ++|+.
T Consensus 219 ~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~L~-~lp~~l~~l-~~L~~ 288 (622)
T 3g06_A 219 L---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQLT-RLPESLIHL-SSETT 288 (622)
T ss_dssp C---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCC-SCCGGGGGS-CTTCE
T ss_pred C---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCCCCC-cCCHHHhhc-cccCE
Confidence 3 4789999999999998 44 456899999999999997655 332 239999999998 789999999 79999
Q ss_pred EEecCCCCCC
Q 045704 344 VSLVDNCLYM 353 (362)
Q Consensus 344 L~L~~N~l~~ 353 (362)
|+|++|+++.
T Consensus 289 L~L~~N~l~~ 298 (622)
T 3g06_A 289 VNLEGNPLSE 298 (622)
T ss_dssp EECCSCCCCH
T ss_pred EEecCCCCCC
Confidence 9999999973
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-25 Score=213.24 Aligned_cols=264 Identities=25% Similarity=0.314 Sum_probs=196.2
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|++++|.+++ +|.. +++|++|++++|.+.+ ++.. .++|++|++++|.+++. | .|+++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c-ccCCCCCCCEEE
Confidence 4678899999998887 5643 3789999999998874 3321 26899999999999874 5 589999999999
Q ss_pred ccCCcccCC--------eeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCccccc
Q 045704 147 LDNNDFQGP--------RLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFG 218 (362)
Q Consensus 147 L~~n~l~~~--------~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~ 218 (362)
+++|.+++. .+++++|.+.+ +|.+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+| .+.
T Consensus 160 l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l~-~lp-~~~ 234 (454)
T 1jl5_A 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL-PLSLESIVAGNNILE-ELP-ELQ 234 (454)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC-CTTCCEEECCSSCCS-SCC-CCT
T ss_pred CCCCcCcccCCCcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC-cCcccEEECcCCcCC-ccc-ccC
Confidence 999988763 68888999888 4579999999999999999985 4432 369999999999998 676 488
Q ss_pred CCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCC--Chhh-------
Q 045704 219 DMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF--LPAY------- 289 (362)
Q Consensus 219 ~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~--~~~~------- 289 (362)
.+++|++|++++|.+++.. . ..++|+.|++++|+++++ |.. +++|++|++++|.+++. .|..
T Consensus 235 ~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l--~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~ 305 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDL--PEL---PQSLTFLDVSENIFSGLSELPPNLYYLNAS 305 (454)
T ss_dssp TCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCC--CCC---CTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred CCCCCCEEECCCCcCCccc-c---cccccCEEECCCCccccc--Ccc---cCcCCEEECcCCccCcccCcCCcCCEEECc
Confidence 9999999999999998633 2 247888888888888753 433 25667777777766651 1111
Q ss_pred ------hcCC-CCCCeEeccCCcCccCCChhhhh-ceeecccccccccCChhhhcCCCCCcEEEecCCCCCC---CCCcc
Q 045704 290 ------LASM-PNLSALSLEHNKFIGMIPTQFAL-KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM---CPEMF 358 (362)
Q Consensus 290 ------~~~l-~~L~~L~L~~n~l~~~~~~~~~~-~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~---~P~~~ 358 (362)
+..+ ++|+.|++++|++++. |..+.. .+|++++|+++ .+|. .+ ++|++|++++|+++. +|..+
T Consensus 306 ~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~L~~N~l~-~lp~---~l-~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 306 SNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPRLERLIASFNHLA-EVPE---LP-QNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp SSCCSEECCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCS-CCCC---CC-TTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCcCCcccCCcCcCCEEECCCCccccc-cccCCcCCEEECCCCccc-cccc---hh-hhccEEECCCCCCCcCCCChHHH
Confidence 1122 4778888888887763 333322 38888888887 4665 35 688899999988876 45555
Q ss_pred cC
Q 045704 359 FF 360 (362)
Q Consensus 359 ~~ 360 (362)
..
T Consensus 380 ~~ 381 (454)
T 1jl5_A 380 ED 381 (454)
T ss_dssp CE
T ss_pred Hh
Confidence 43
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1e-28 Score=223.96 Aligned_cols=256 Identities=23% Similarity=0.238 Sum_probs=194.9
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEc
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYL 147 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 147 (362)
.+++..+++.+.+...+...+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 456666777777765555566677899999999999998778889999999999999999987654 888999999999
Q ss_pred cCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEE
Q 045704 148 DNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLD 227 (362)
Q Consensus 148 ~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 227 (362)
++|.+++. ...++|++|++++|.+++..+.. .++|++|++++|++.+..+..+..+++|++|+
T Consensus 88 s~n~l~~l----------------~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 88 NNNYVQEL----------------LVGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp CSSEEEEE----------------EECTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred cCCccccc----------------cCCCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 98887621 12368888888888887544433 36788888888888876677788888888888
Q ss_pred ccCCcCCCcchhhhc-CCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcC
Q 045704 228 LSRNKLSGTIFSVLF-DHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 228 ls~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 306 (362)
+++|.+++..+..+. .+++|++|++++|.++.+ +. ...+++|++|++++|.+++.++ .+..+++|+.|++++|++
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCC
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcc
Confidence 888888877666653 678888888888888764 32 2347788888888888887544 477788888888888888
Q ss_pred ccCCChhhhh----ceeeccccccc-ccCChhhhcCCCCCcEEEecC
Q 045704 307 IGMIPTQFAL----KRLLWGGNYLF-GPISGHLMGMKPGFANVSLVD 348 (362)
Q Consensus 307 ~~~~~~~~~~----~~L~l~~N~l~-~~~~~~~~~~~~~L~~L~L~~ 348 (362)
++. |..+.. ..|++++|.++ +.+|..+..+ ++|+.+++++
T Consensus 227 ~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~ 271 (317)
T 3o53_A 227 VLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQT 271 (317)
T ss_dssp CEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC-HHHHHHHHHH
T ss_pred cch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhcc-ccceEEECCC
Confidence 854 333322 27888888887 6677777777 6777777774
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-26 Score=207.53 Aligned_cols=237 Identities=21% Similarity=0.162 Sum_probs=200.1
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCc-CCccchhhhcCCCCCcE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNS-FKCLIHASVGSLSQLEE 144 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~ 144 (362)
..++++.|+++++.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35789999999999998877889999999999999999998778899999999999999997 88887889999999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCC
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDME 221 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~ 221 (362)
|++++|.++ +..+. +..+++|++|++++|.+++..+..+. ++|++|++++|++.+..+..+..++
T Consensus 110 L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 110 LHLDRCGLQ------------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp EECTTSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCC------------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 999987764 34444 88899999999999999966665565 8999999999999976667799999
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
+|++|++++|.+++..+..+..+++|+.|++++|.++++ .+..+..+++|++|++++|.+....+.. .....++.+..
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~ 255 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRG 255 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCS
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhccc
Confidence 999999999999998899999999999999999999974 2345788999999999999998643321 11123445557
Q ss_pred cCCcCccCCChhhhh
Q 045704 302 EHNKFIGMIPTQFAL 316 (362)
Q Consensus 302 ~~n~l~~~~~~~~~~ 316 (362)
+.+.+.+..|..+..
T Consensus 256 ~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 256 SSSEVPCSLPQRLAG 270 (285)
T ss_dssp EECCCBEEESGGGTT
T ss_pred ccCccccCCchHhCC
Confidence 778888888876544
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.6e-25 Score=198.25 Aligned_cols=220 Identities=20% Similarity=0.227 Sum_probs=161.5
Q ss_pred CCCCCCCCCCCcccceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEe
Q 045704 43 VDPGDHLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLG 122 (362)
Q Consensus 43 ~~~c~~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 122 (362)
++.|.| .|+.|.. ..+++.+++++++++. +|..+. +++++|++++|.+.+..+..|.++++|++|+
T Consensus 2 ~~~C~~-------~~~~C~c----~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 67 (270)
T 2o6q_A 2 EALCKK-------DGGVCSC----NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67 (270)
T ss_dssp CCCBGG-------GTCSBEE----ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE
T ss_pred CccCCC-------CCCCCEe----CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE
Confidence 578998 7888876 3567789999998874 565443 5799999999999876667889999999999
Q ss_pred CcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcE
Q 045704 123 LSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVE 201 (362)
Q Consensus 123 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~ 201 (362)
+++|.++...+..|.++++|++|++++|.++ +..+. +..+++|++|++++|.+++
T Consensus 68 l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~------------ 123 (270)
T 2o6q_A 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQ------------ALPIGVFDQLVNLAELRLDRNQLKS------------ 123 (270)
T ss_dssp CCSSCCSCCCTTTTSSCTTCCEEECCSSCCC------------CCCTTTTTTCSSCCEEECCSSCCCC------------
T ss_pred CCCCccCeeChhhhcCCCCCCEEECCCCcCC------------cCCHhHcccccCCCEEECCCCccCe------------
Confidence 9999998887777888888999988877654 22222 5556666666666665553
Q ss_pred EEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCc
Q 045704 202 LSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNE 281 (362)
Q Consensus 202 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~ 281 (362)
..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.+. +..+..+++|++|++++|.
T Consensus 124 ----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 124 ----------LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ----------eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCc
Confidence 33444566777777777777777666666777777777777777777532 3346667778888888887
Q ss_pred CCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 282 LGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 282 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+++.++..+..+++|+.|++++|++....+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 777666667777888888888888776543
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.7e-28 Score=219.07 Aligned_cols=245 Identities=22% Similarity=0.189 Sum_probs=175.9
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCC-ccchhhhc-------CCCCCcEEEccCCcccCCeeEe
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFK-CLIHASVG-------SLSQLEELYLDNNDFQGPRLEI 159 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~l~l 159 (362)
++..++|++|++++|.+ .+|..+... |++|++++|.+. ...|..+. ++++|++|++++|.++
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------ 108 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT------ 108 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB------
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc------
Confidence 34455677777777777 456555443 777777777773 33444443 5777777777765543
Q ss_pred ecCCCCCCCCC-C--CCCCCCCEEeCcccccCCCCCCCcc-------cCCcEEEeeCCccCCCCcccccCCCCCCEEEcc
Q 045704 160 RQNSISSEFPY-L--GSLKSLSFLDASDNNITGKIPPTFP-------TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLS 229 (362)
Q Consensus 160 ~~n~~~~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~l~-------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 229 (362)
+..|. + ..+++|++|++++|.+++. |..+. ++|++|++++|++.+..+..+.++++|++|+++
T Consensus 109 ------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 109 ------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp ------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred ------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 23333 3 6777788888888877755 55443 678888999988887777888889999999999
Q ss_pred CCcCCCc--chhhh--cCCCCCcEEEccCCCCCCCC-CC-CCcCCCCCCCEEEccCCcCCCCCh-hhhcCCCCCCeEecc
Q 045704 230 RNKLSGT--IFSVL--FDHPSLQQLTLSYNNFTSLQ-VP-ANMGLTSKLVALELSYNELGGFLP-AYLASMPNLSALSLE 302 (362)
Q Consensus 230 ~n~l~~~--~~~~l--~~~~~L~~L~L~~n~l~~~~-l~-~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 302 (362)
+|.+.+. .+..+ ..+++|++|++++|+++.+. ++ ..+..+++|++|++++|.+++..| ..+..+++|++|+++
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 9987764 23334 77889999999999887431 11 223466889999999999988664 455667899999999
Q ss_pred CCcCccCCChhhhh--ceeecccccccccCChhhhcCCCCCcEEEecCCCCCC
Q 045704 303 HNKFIGMIPTQFAL--KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 303 ~n~l~~~~~~~~~~--~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~ 353 (362)
+|+++ .+|..+.. .+|++++|++++. |. +..+ ++|++|++++|+++.
T Consensus 262 ~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~-p~-~~~l-~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLK-QVPKGLPAKLSVLDLSYNRLDRN-PS-PDEL-PQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCS-SCCSSCCSEEEEEECCSSCCCSC-CC-TTTS-CEEEEEECTTCTTTC
T ss_pred CCccC-hhhhhccCCceEEECCCCCCCCC-hh-HhhC-CCCCEEeccCCCCCC
Confidence 99988 44544432 2899999999876 65 7888 799999999999875
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.4e-27 Score=226.09 Aligned_cols=235 Identities=25% Similarity=0.261 Sum_probs=183.1
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
...+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------------- 94 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------------- 94 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-------------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-------------
Confidence 3344589999999999987777888899999999999998887755 8888999999999887652
Q ss_pred CCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhc-CCCC
Q 045704 168 FPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLF-DHPS 246 (362)
Q Consensus 168 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~-~~~~ 246 (362)
+...++|++|++++|.+++..+..+ ++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++
T Consensus 95 ---l~~~~~L~~L~L~~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 95 ---LLVGPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ---EEECTTCCEEECCSSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCCCCcCEEECcCCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 1123788889999988886554433 6889999999998877788888888999999999999887777775 6888
Q ss_pred CcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh----ceeecc
Q 045704 247 LQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL----KRLLWG 322 (362)
Q Consensus 247 L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~~L~l~ 322 (362)
|+.|++++|.++++ +. ...+++|++|++++|.+++.++. +..+++|+.|++++|.+++.++ .+.. ..|+++
T Consensus 171 L~~L~Ls~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 171 LEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLR 245 (487)
T ss_dssp CCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECT
T ss_pred ccEEecCCCccccc--cc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcC
Confidence 99999999998864 33 33578899999999998885554 7788899999999998887433 3322 278888
Q ss_pred ccccc-ccCChhhhcCCCCCcEEEec
Q 045704 323 GNYLF-GPISGHLMGMKPGFANVSLV 347 (362)
Q Consensus 323 ~N~l~-~~~~~~~~~~~~~L~~L~L~ 347 (362)
+|.+. +.+|..+..+ +.|+.+++.
T Consensus 246 ~N~l~c~~~~~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 246 GNGFHCGTLRDFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp TCCBCHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCCCcCcchHHHHHhC-CCCcEEecc
Confidence 88887 5667777777 677777775
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.8e-27 Score=215.22 Aligned_cols=241 Identities=18% Similarity=0.189 Sum_probs=193.8
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCC-CCCchhhc-------CCCCCCEEeCcCCcCCccchhhh--
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFS-GSVPDSLS-------KLVRRKRLGLSGNSFKCLIHASV-- 136 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~-- 136 (362)
..+++.+++.+|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 36778888888888 667766554 899999999994 45676665 79999999999999998888876
Q ss_pred cCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCC-----CCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCc
Q 045704 137 GSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSL-----KSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNN 208 (362)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l-----~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~ 208 (362)
..+++|++|++++|.+++ . |. +..+ ++|++|++++|.+.+..+..+. ++|++|++++|+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWAT------------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCBCSS------------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCCCcc------------h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 899999999999887752 3 32 4444 8999999999999987777776 899999999999
Q ss_pred cCCC--Ccccc--cCCCCCCEEEccCCcCCCc---chhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCc
Q 045704 209 LVGN--VPENF--GDMEFLQVLDLSRNKLSGT---IFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNE 281 (362)
Q Consensus 209 l~~~--~~~~l--~~l~~L~~L~ls~n~l~~~---~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~ 281 (362)
+.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|++++......+..+++|++|++++|.
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 8754 23344 7899999999999999842 234456789999999999999974312455667999999999999
Q ss_pred CCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeeccccccccc
Q 045704 282 LGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGP 329 (362)
Q Consensus 282 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~ 329 (362)
++. +|..+. ++|++|++++|++++. |. +... +|++++|.+++.
T Consensus 265 l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 265 LKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 995 566555 8999999999999988 44 3332 899999999763
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.4e-25 Score=195.42 Aligned_cols=206 Identities=25% Similarity=0.250 Sum_probs=160.7
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY- 170 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~- 170 (362)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++ +..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------SLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------EECTTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------ccChhh
Confidence 46778888888877655567777788888888888877776667777788888888766654 22333
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCC-CCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVG-NVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L 247 (362)
+..+++|++|++++|.+.+..+..+. ++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++|
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 66777888888888877755554454 788888888888875 358889999999999999999998777777666666
Q ss_pred c----EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 248 Q----QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 248 ~----~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+ .|++++|.++.+ +.......+|++|++++|.+++.++..+..+++|+.|++++|++.+..+
T Consensus 176 ~~l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTCCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccceeeecCCCccccc--CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 6 899999999864 4444444589999999999998877788999999999999999998776
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5e-27 Score=212.81 Aligned_cols=244 Identities=21% Similarity=0.190 Sum_probs=198.3
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCC
Q 045704 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLG 172 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~ 172 (362)
.++..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++ ..+ +.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~~-~~ 77 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE------------TLD-LE 77 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE------------EEE-ET
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc------------chh-hh
Confidence 35566788888765555667778899999999999999988999999999999999888752 112 67
Q ss_pred CCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 173 SLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
.+++|++|++++|.+++..+. ++|++|++++|++.+..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred hcCCCCEEECcCCccccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 889999999999998743221 8999999999999865433 4688999999999999888888889999999999
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh---ceeeccccccccc
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL---KRLLWGGNYLFGP 329 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~L~l~~N~l~~~ 329 (362)
++|.++..........+++|++|++++|.+++. +. ...+++|++|++++|++++.++..... .+|++++|+++ .
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-c
Confidence 999999753233345678999999999999975 32 345899999999999999876653222 29999999997 5
Q ss_pred CChhhhcCCCCCcEEEecCCCCC--CCCCccc
Q 045704 330 ISGHLMGMKPGFANVSLVDNCLY--MCPEMFF 359 (362)
Q Consensus 330 ~~~~~~~~~~~L~~L~L~~N~l~--~~P~~~~ 359 (362)
+|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 229 l~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 229 IEKALRFS-QNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp ECTTCCCC-TTCCEEECTTCCCBHHHHHHHHH
T ss_pred hhhHhhcC-CCCCEEEccCCCccCcCHHHHHh
Confidence 78888888 79999999999998 4444443
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.9e-28 Score=232.06 Aligned_cols=285 Identities=17% Similarity=0.201 Sum_probs=147.4
Q ss_pred CeEEEEEecCCCCcc----cccccccCCCCCCEEeCCCCcCCCCCchhh-cCCC----CCCEEeCcCCcCCc----cchh
Q 045704 68 ARVTEITLDPVGYPG----SLISSKWNLLHLPTLDISDNSFSGSVPDSL-SKLV----RRKRLGLSGNSFKC----LIHA 134 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~~~~----~~~~ 134 (362)
++++.|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 445555555555543 234444555555555555555543322222 2233 45555555555552 2344
Q ss_pred hhcCCCCCcEEEccCCcccC-----------------CeeEeecCCCCCCC----CC-CCCCCCCCEEeCcccccCCCCC
Q 045704 135 SVGSLSQLEELYLDNNDFQG-----------------PRLEIRQNSISSEF----PY-LGSLKSLSFLDASDNNITGKIP 192 (362)
Q Consensus 135 ~~~~l~~L~~L~L~~n~l~~-----------------~~l~l~~n~~~~~~----~~-~~~l~~L~~L~l~~n~~~~~~~ 192 (362)
.+.++++|++|++++|.++. ..+++++|.+.+.. +. +..+++|++|++++|.+++..+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 55555555555555555431 13444444444321 11 3334555555555555432222
Q ss_pred CCcc-------cCCcEEEeeCCccCCC----CcccccC-----------------------------CCCCCEEEccCCc
Q 045704 193 PTFP-------TSLVELSVRNNNLVGN----VPENFGD-----------------------------MEFLQVLDLSRNK 232 (362)
Q Consensus 193 ~~l~-------~~L~~L~l~~n~l~~~----~~~~l~~-----------------------------l~~L~~L~ls~n~ 232 (362)
..+. ++|++|++++|.+... ++..+.. +++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2111 1444444444444432 2333333 4455555555555
Q ss_pred CCCc----chhhhcCCCCCcEEEccCCCCCCCC---CCCCc-CCCCCCCEEEccCCcCCCC----ChhhhcCCCCCCeEe
Q 045704 233 LSGT----IFSVLFDHPSLQQLTLSYNNFTSLQ---VPANM-GLTSKLVALELSYNELGGF----LPAYLASMPNLSALS 300 (362)
Q Consensus 233 l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~---l~~~~-~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 300 (362)
++.. ++..+..+++|++|++++|.+++.. +...+ ...++|++|++++|.+++. ++..+..+++|++|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 5432 2333444555555555555554210 00000 1124667777777766654 345556667888888
Q ss_pred ccCCcCccCCChhhhh---------ceeecccccccc----cCChhhhcCCCCCcEEEecCCCCCC
Q 045704 301 LEHNKFIGMIPTQFAL---------KRLLWGGNYLFG----PISGHLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 301 L~~n~l~~~~~~~~~~---------~~L~l~~N~l~~----~~~~~~~~~~~~L~~L~L~~N~l~~ 353 (362)
+++|++.+..+..+.. .+|++++|.+++ .+|..+..+ ++|++|++++|+++.
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN-HSLRELDLSNNCLGD 412 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-CCCCEEECCSSSCCH
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC-CCccEEECCCCCCCH
Confidence 8888777655544331 178888888875 677777777 688888888888763
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.6e-24 Score=190.07 Aligned_cols=218 Identities=23% Similarity=0.205 Sum_probs=136.8
Q ss_pred EeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCC
Q 045704 97 LDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLK 175 (362)
Q Consensus 97 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~ 175 (362)
++..+..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ +..+. +..++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~ 76 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------TIEDGAYQSLS 76 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC------------EECTTTTTTCT
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC------------ccCHHHccCCc
Confidence 344444444 4555443 47999999999999887778899999999999877654 22332 66677
Q ss_pred CCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCC
Q 045704 176 SLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYN 255 (362)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 255 (362)
+|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 77 ~L~~L~L~~n~l~~~~~----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 77 HLSTLILTGNPIQSLAL----------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp TCCEEECTTCCCCEECT----------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCEEECCCCccCccCh----------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 77777777776654333 34455555666666666555544444555666666666666
Q ss_pred CCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCC----eEeccCCcCccCCChhhhhc---eeecccccccc
Q 045704 256 NFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLS----ALSLEHNKFIGMIPTQFALK---RLLWGGNYLFG 328 (362)
Q Consensus 256 ~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~---~L~l~~N~l~~ 328 (362)
.++.+.+|..+..+++|++|++++|++++..+..+..+++|+ .+++++|++++..+..+... +|++++|++++
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceee
Confidence 665544455556666666666666666655555554444444 66666666665555444322 66667676665
Q ss_pred cCChhhhcCCCCCcEEEecCCCCC
Q 045704 329 PISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 329 ~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
..+..+..+ ++|++|++++|+++
T Consensus 215 ~~~~~~~~l-~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 215 VPDGIFDRL-TSLQKIWLHTNPWD 237 (276)
T ss_dssp CCTTTTTTC-CSCCEEECCSSCBC
T ss_pred cCHhHhccc-ccccEEEccCCccc
Confidence 544455666 57777777777776
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4e-25 Score=211.68 Aligned_cols=224 Identities=19% Similarity=0.147 Sum_probs=190.8
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
..++++.|++++|.+++..|..+..+++|++|+|++|.+.+..| +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34689999999999999888899999999999999999986555 9999999999999999987643 3899999
Q ss_pred EccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCccccc-CCCC
Q 045704 146 YLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFG-DMEF 222 (362)
Q Consensus 146 ~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~-~l~~ 222 (362)
++++|.++.. . ...+++|+.|++++|.+++..|..+. ++|+.|++++|.+.+..|..+. .+++
T Consensus 105 ~L~~N~l~~~------------~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 105 HAANNNISRV------------S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ECCSSCCCCE------------E--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ECcCCcCCCC------------C--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 9998887632 1 12357899999999999987777776 8999999999999988888876 7899
Q ss_pred CCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEecc
Q 045704 223 LQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLE 302 (362)
Q Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 302 (362)
|++|++++|.+++..+ ...+++|+.|++++|.++++ |..+..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus 171 L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred ccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 9999999999987643 34589999999999999964 6668888999999999999997 56678899999999999
Q ss_pred CCcCc-cCCChhhh
Q 045704 303 HNKFI-GMIPTQFA 315 (362)
Q Consensus 303 ~n~l~-~~~~~~~~ 315 (362)
+|++. +.+|..+.
T Consensus 246 ~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 246 GNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCBCHHHHHHHHT
T ss_pred CCCCcCcchHHHHH
Confidence 99998 44444443
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.9e-23 Score=183.69 Aligned_cols=200 Identities=24% Similarity=0.282 Sum_probs=157.9
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY- 170 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~- 170 (362)
...+.++++++.++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.++ +..+.
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~i~~~~ 80 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------TLPAGI 80 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------CCCTTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------eeChhh
Confidence 35778888888888 4665443 57888888888888877777888888888888876654 12222
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEE
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQL 250 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L 250 (362)
+..+++|++|++++|.+ .+..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 81 ~~~l~~L~~L~l~~n~l----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKL----------------------QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TSSCTTCCEEECCSSCC----------------------CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCcC----------------------CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 45555566655555544 43444556788999999999999999888889999999999
Q ss_pred EccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccc
Q 045704 251 TLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYL 326 (362)
Q Consensus 251 ~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l 326 (362)
++++|.++.++ +..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+... .|++++|.+
T Consensus 139 ~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 139 SLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 99999999742 3457889999999999999999888889999999999999999998877666432 899999998
Q ss_pred ccc
Q 045704 327 FGP 329 (362)
Q Consensus 327 ~~~ 329 (362)
...
T Consensus 218 ~c~ 220 (270)
T 2o6q_A 218 DCT 220 (270)
T ss_dssp CCS
T ss_pred eCC
Confidence 654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.6e-23 Score=187.12 Aligned_cols=201 Identities=24% Similarity=0.240 Sum_probs=103.1
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCC
Q 045704 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFP 169 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~ 169 (362)
+++++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++.. +
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~ 71 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-------------Q 71 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-------------E
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-------------c
Confidence 3344444444444444 2332222 3444444444444444444444444444444444443310 1
Q ss_pred CCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 045704 170 YLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247 (362)
Q Consensus 170 ~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L 247 (362)
....+++|++|++++|.++ .+|..+. ++|++|++++|++.+..+..|.++++|++|++++|.+++..+..+..+++|
T Consensus 72 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 72 VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 1123444555555555444 3333333 455555555555554444556666666666666666665555556666666
Q ss_pred cEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccC
Q 045704 248 QQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 248 ~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
+.|++++|+++.++ +..+..+++|++|++++|+++. +|..+...++|+.+++++|++...
T Consensus 151 ~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 151 EKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence 66666666666431 2234556666666666666664 344444555666666666666543
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=4.3e-27 Score=223.97 Aligned_cols=284 Identities=19% Similarity=0.167 Sum_probs=215.4
Q ss_pred eEEEEEecCCCCcc----cccccccCCCCCCEEeCCCCcCCCCCchhhc-----CCCCCCEEeCcCCcCCccc----hhh
Q 045704 69 RVTEITLDPVGYPG----SLISSKWNLLHLPTLDISDNSFSGSVPDSLS-----KLVRRKRLGLSGNSFKCLI----HAS 135 (362)
Q Consensus 69 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~~~~~~----~~~ 135 (362)
++++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|+++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 79999999999874 5688888999999999999998754444332 3568999999999988743 556
Q ss_pred hcCCCCCcEEEccCCcccC-----------------CeeEeecCCCCCC----CCC-CCCCCCCCEEeCcccccCCCCCC
Q 045704 136 VGSLSQLEELYLDNNDFQG-----------------PRLEIRQNSISSE----FPY-LGSLKSLSFLDASDNNITGKIPP 193 (362)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~-----------------~~l~l~~n~~~~~----~~~-~~~l~~L~~L~l~~n~~~~~~~~ 193 (362)
+..+++|++|++++|.++. ..+++++|.+.+. ++. +..+++|++|++++|.+++....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 6778999999999998643 2678888887763 233 66789999999999987643211
Q ss_pred C----c---ccCCcEEEeeCCccCCC----CcccccCCCCCCEEEccCCcCCCcchhhhcC-----CCCCcEEEccCCCC
Q 045704 194 T----F---PTSLVELSVRNNNLVGN----VPENFGDMEFLQVLDLSRNKLSGTIFSVLFD-----HPSLQQLTLSYNNF 257 (362)
Q Consensus 194 ~----l---~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~-----~~~L~~L~L~~n~l 257 (362)
. + .++|++|++++|+++.. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 1 1 27899999999998853 5677778999999999999997654444432 37999999999999
Q ss_pred CCCC---CCCCcCCCCCCCEEEccCCcCCCCChhhhcC-----CCCCCeEeccCCcCcc----CCChhhhhc----eeec
Q 045704 258 TSLQ---VPANMGLTSKLVALELSYNELGGFLPAYLAS-----MPNLSALSLEHNKFIG----MIPTQFALK----RLLW 321 (362)
Q Consensus 258 ~~~~---l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~----~L~l 321 (362)
++.. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++ .++..+... +|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 8632 3445566789999999999998755544432 6799999999999986 556655433 9999
Q ss_pred ccccccccCChhhhc----CCCCCcEEEecCCCCC
Q 045704 322 GGNYLFGPISGHLMG----MKPGFANVSLVDNCLY 352 (362)
Q Consensus 322 ~~N~l~~~~~~~~~~----~~~~L~~L~L~~N~l~ 352 (362)
++|++++.....+.. ...+|+.|++.++.+.
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 999998764444432 1146999999988775
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.8e-24 Score=190.42 Aligned_cols=208 Identities=23% Similarity=0.236 Sum_probs=130.4
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
...+++|++|+++++.+. .+ ..+..+++|++|++++|.+++. ..+.++++|++|++++|.++ +.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~------------~~ 100 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ------------SL 100 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC------------CC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC------------cc
Confidence 345566666666666665 22 2356666666666666666653 24556666666666655433 22
Q ss_pred CCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCC
Q 045704 168 FPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPS 246 (362)
Q Consensus 168 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (362)
.+. +..+++|++|++++| ++.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 101 ~~~~~~~l~~L~~L~L~~n----------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN----------------------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ChhHhcCCcCCCEEECCCC----------------------cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 222 444555555555554 444444445666677777777777777666666667777
Q ss_pred CcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhceeecccccc
Q 045704 247 LQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYL 326 (362)
Q Consensus 247 L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~l~~N~l 326 (362)
|+.|++++|+++++ .+..++.+++|++|++++|.+++.++..+..+++|+.|++++|++.+..|. ...+++..|.+
T Consensus 159 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~---l~~l~~~~n~~ 234 (272)
T 3rfs_A 159 LTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG---IRYLSEWINKH 234 (272)
T ss_dssp CCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT---THHHHHHHHHT
T ss_pred CCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH---HHHHHHHHHhC
Confidence 77777777777753 233456667777777777777776666677777777777777777766553 22566777777
Q ss_pred cccCChhhhcC
Q 045704 327 FGPISGHLMGM 337 (362)
Q Consensus 327 ~~~~~~~~~~~ 337 (362)
+|.+|.+++.+
T Consensus 235 ~g~ip~~~~~~ 245 (272)
T 3rfs_A 235 SGVVRNSAGSV 245 (272)
T ss_dssp GGGBBCTTSCB
T ss_pred CCcccCccccc
Confidence 77777777665
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3e-22 Score=196.12 Aligned_cols=236 Identities=25% Similarity=0.272 Sum_probs=186.7
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCC--------eeEeecCC
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGP--------RLEIRQNS 163 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~l~l~~n~ 163 (362)
.+++.|++++|.++ .+|..+. ++|++|++++|.++.+ |. .+++|++|++++|.++.. .+++++|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCc
Confidence 46899999999998 7777665 7999999999999976 44 578999999999998754 67888888
Q ss_pred CCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcC
Q 045704 164 ISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFD 243 (362)
Q Consensus 164 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 243 (362)
+.+..+ .+++|+.|++++|.++. +|..+ ++|++|++++|++.+ +|. .+++|+.|++++|.+++.. ..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~-lp~~l-~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~----~~ 179 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTS-LPVLP-PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP----ML 179 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC----CC
T ss_pred CCCCCC---CCCCcCEEECCCCCCCc-CCCCC-CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc----cc
Confidence 877544 56788888888888874 55433 788888888888874 443 3467888899988888643 45
Q ss_pred CCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh-ceeecc
Q 045704 244 HPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL-KRLLWG 322 (362)
Q Consensus 244 ~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~l~ 322 (362)
+++|+.|++++|.++++ |.. +++|+.|++++|.++.. |. .+++|+.|++++|++++.. ..+.. ..|+++
T Consensus 180 ~~~L~~L~Ls~N~l~~l--~~~---~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~lp-~~l~~L~~L~Ls 249 (622)
T 3g06_A 180 PSGLQELSVSDNQLASL--PTL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLP-VLPSELKELMVS 249 (622)
T ss_dssp CTTCCEEECCSSCCSCC--CCC---CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCCC-CCCTTCCEEECC
T ss_pred CCCCcEEECCCCCCCCC--CCc---cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcCC-CCCCcCcEEECC
Confidence 68899999999999864 443 47899999999999864 33 3478999999999999854 33333 399999
Q ss_pred cccccccCChhhhcCCCCCcEEEecCCCCCCCCCcccCCC
Q 045704 323 GNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEMFFFCQ 362 (362)
Q Consensus 323 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~~~~~~ 362 (362)
+|.++ .+|. .+ ++|++|+|++|.|+.+|..+..++
T Consensus 250 ~N~L~-~lp~---~~-~~L~~L~Ls~N~L~~lp~~l~~l~ 284 (622)
T 3g06_A 250 GNRLT-SLPM---LP-SGLLSLSVYRNQLTRLPESLIHLS 284 (622)
T ss_dssp SSCCS-CCCC---CC-TTCCEEECCSSCCCSCCGGGGGSC
T ss_pred CCCCC-cCCc---cc-ccCcEEeCCCCCCCcCCHHHhhcc
Confidence 99997 4666 45 699999999999999999887764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.5e-22 Score=180.95 Aligned_cols=199 Identities=24% Similarity=0.168 Sum_probs=173.2
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.+++++++++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 578899999999987 4565553 6899999999999987888999999999999999999987443 7899999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQ 224 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 224 (362)
+++|.+. .....+..+++|++|++++|.+++..+..+. ++|++|++++|++.+..+..|..+++|+
T Consensus 84 Ls~N~l~------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 84 LSHNQLQ------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CCSSCCS------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCC------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 9988775 2222378899999999999999976666676 8999999999999977777789999999
Q ss_pred EEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGG 284 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~ 284 (362)
.|++++|.+++..+..+..+++|+.|++++|+++. +|..+...++|+.+++++|.+..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCccC
Confidence 99999999998888888899999999999999995 57777788899999999999876
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.5e-23 Score=182.65 Aligned_cols=175 Identities=24% Similarity=0.283 Sum_probs=120.7
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.|++.++.++. .+.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5789999999998874 3468899999999999999985 3 4789999999999999999999888899999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFL 223 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L 223 (362)
+++|.++ +..+. +..+++|++|++++|.+++..+..+. ++|++|++++|++.+..+..+..+++|
T Consensus 116 L~~n~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 116 LVENQLQ------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp CTTSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcCC------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 9987764 33444 67788888888888877744333332 444455554444443333334444444
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC
Q 045704 224 QVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257 (362)
Q Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 257 (362)
++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 4444444444444444444444444444444443
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.5e-22 Score=175.69 Aligned_cols=186 Identities=22% Similarity=0.211 Sum_probs=128.5
Q ss_pred cceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhh
Q 045704 56 CGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHAS 135 (362)
Q Consensus 56 ~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 135 (362)
.|+.|.. ..+.++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..
T Consensus 8 ~gC~C~~------~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 8 TGCTCNE------GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp HSSEEEG------GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CceEcCC------CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 6888843 3457888988887 4565554 68999999999999888888999999999999999999988888
Q ss_pred hcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCc
Q 045704 136 VGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVP 214 (362)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~ 214 (362)
|.++++|++|++++|.++ +..+. +..+++|++|++++|.+++..+
T Consensus 79 ~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------- 124 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLA------------SLPLGVFDHLTQLDKLYLGGNQLKSLPS---------------------- 124 (251)
T ss_dssp TTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------
T ss_pred hccCCcCCEEECCCCccc------------ccChhHhcccCCCCEEEcCCCcCCCcCh----------------------
Confidence 899999999999877664 23333 5667777777777776663332
Q ss_pred ccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCC
Q 045704 215 ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF 285 (362)
Q Consensus 215 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~ 285 (362)
..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.+ .+..+..+++|++|++++|++.+.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence 3344555566666666666555555555566666666666666543 133455556666666666666553
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.8e-24 Score=197.44 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=37.2
Q ss_pred EecCCCCcccccccccCCCCCCEEeCCCCcCCCCCc----hhhcCCC-CCCEEeCcCCcCCccchhhhcCC-----CCCc
Q 045704 74 TLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVP----DSLSKLV-RRKRLGLSGNSFKCLIHASVGSL-----SQLE 143 (362)
Q Consensus 74 ~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L~ 143 (362)
+++.+.+++.+|..+...++|++|++++|.+.+..+ ..+.+++ +|++|++++|.++...+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444544444444444445555555555543333 3444444 45555555555544444433332 4555
Q ss_pred EEEccCCcc
Q 045704 144 ELYLDNNDF 152 (362)
Q Consensus 144 ~L~L~~n~l 152 (362)
+|++++|.+
T Consensus 84 ~L~Ls~n~l 92 (362)
T 3goz_A 84 SLNLSGNFL 92 (362)
T ss_dssp EEECCSSCG
T ss_pred EEECcCCcC
Confidence 555554444
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.4e-22 Score=181.13 Aligned_cols=192 Identities=21% Similarity=0.300 Sum_probs=113.1
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCC
Q 045704 90 NLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFP 169 (362)
Q Consensus 90 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~ 169 (362)
.+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++. ++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-------------~~ 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-------------VS 101 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-------------CG
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-------------ch
Confidence 44556666666665552 33 35555666666666666555433 5556666666666555431 12
Q ss_pred CCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 045704 170 YLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSL 247 (362)
Q Consensus 170 ~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L 247 (362)
.+..+++|++|++++|.+++. +. +. ++|++|++++|++.+.. . +..+++|++|++++|.+++..+ +..+++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 175 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSDLTP--LANLSKL 175 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCCChh--hcCCCCC
Confidence 344555666666666665532 21 22 56666666666665332 2 5666777777777777665433 6666777
Q ss_pred cEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccC
Q 045704 248 QQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 248 ~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
+.|++++|.++++ +. +..+++|++|++++|++.+..+ +..+++|+.|++++|++++.
T Consensus 176 ~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 176 TTLKADDNKISDI--SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CEEECCSSCCCCC--GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CEEECCCCccCcC--hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 7777777777653 22 5566677777777777766432 56677777777777776653
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=186.32 Aligned_cols=220 Identities=18% Similarity=0.147 Sum_probs=107.5
Q ss_pred CCCEEeCCCCcCCCCCch---hhcCCCCCCEEeCcCCcCCccchhhh--cCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 93 HLPTLDISDNSFSGSVPD---SLSKLVRRKRLGLSGNSFKCLIHASV--GSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
.++.+.+.++.+...... .+..+++|++|++++|.+++..|..+ .++++|++|++++|.++. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~------------~ 132 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT------------G 132 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS------------T
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc------------h
Confidence 355555555555321100 11123446666666666665555555 556666666666555432 1
Q ss_pred CC-----CCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCC--C--cccccCCCCCCEEEccCCcCCCc
Q 045704 168 FP-----YLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGN--V--PENFGDMEFLQVLDLSRNKLSGT 236 (362)
Q Consensus 168 ~~-----~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~ls~n~l~~~ 236 (362)
.+ .+..+++|++|++++|.+.+..+..+. ++|++|++++|++.+. + +..+..+++|++|++++|.++..
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 11 023455566666666655544444443 5566666666654321 1 11224555666666666665422
Q ss_pred chh---hhcCCCCCcEEEccCCCCCCCCCCCCcCCC---CCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccC-
Q 045704 237 IFS---VLFDHPSLQQLTLSYNNFTSLQVPANMGLT---SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM- 309 (362)
Q Consensus 237 ~~~---~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~- 309 (362)
... .+..+++|++|++++|++++. .|..+..+ ++|++|++++|+++. +|..+. ++|+.|++++|++++.
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSCC
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCCc
Confidence 111 234455666666666666542 23333333 456666666666653 333332 4566666666666553
Q ss_pred CChhhhhc-eeecccccccc
Q 045704 310 IPTQFALK-RLLWGGNYLFG 328 (362)
Q Consensus 310 ~~~~~~~~-~L~l~~N~l~~ 328 (362)
.+..+... .|++++|.+++
T Consensus 289 ~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTSCCCCSCEECSSTTTSC
T ss_pred hhhhCCCccEEECcCCCCCC
Confidence 22222111 56666665543
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.6e-22 Score=174.30 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=127.7
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCc-CCccchhhhcCCCCCcEEEccC-CcccCCeeEeecCCCCCCCCC
Q 045704 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNS-FKCLIHASVGSLSQLEELYLDN-NDFQGPRLEIRQNSISSEFPY 170 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~l~l~~n~~~~~~~~ 170 (362)
+|++|++++|.+++..+..|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |.++ +..+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~------------~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT------------YIDPD 99 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC------------EECTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee------------EcCHH
Confidence 77888888888876555677788888888888886 7777666778888888888876 5553 22333
Q ss_pred -CCCCCCCCEEeCcccccCCCCCCCcc--cCCc---EEEeeCC-ccCCCCcccccCCCCCC-EEEccCCcCCCcchhhhc
Q 045704 171 -LGSLKSLSFLDASDNNITGKIPPTFP--TSLV---ELSVRNN-NLVGNVPENFGDMEFLQ-VLDLSRNKLSGTIFSVLF 242 (362)
Q Consensus 171 -~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~ls~n~l~~~~~~~l~ 242 (362)
+..+++|++|++++|.+++ +|. +. ++|+ +|++++| ++.+..+..|.++++|+ +|++++|.++...+..+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 5667777777777777764 444 33 4555 7777777 66655555567777777 777777777644444443
Q ss_pred CCCCCcEEEccCCC-CCCCCCCCCcCCC-CCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCC
Q 045704 243 DHPSLQQLTLSYNN-FTSLQVPANMGLT-SKLVALELSYNELGGFLPAYLASMPNLSALSLEHN 304 (362)
Q Consensus 243 ~~~~L~~L~L~~n~-l~~~~l~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 304 (362)
. ++|+.|++++|+ ++.++ +..+..+ ++|++|++++|++++.++. .+++|+.|+++++
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp T-CEEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred C-CCCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 3 677777777774 66431 3345556 6777777777777654333 4556777776665
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.7e-24 Score=194.64 Aligned_cols=258 Identities=15% Similarity=0.101 Sum_probs=189.5
Q ss_pred cceecCcCCCCCCeEEEEEecCCCCcccccccccCC--CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCcc-c
Q 045704 56 CGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNL--LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCL-I 132 (362)
Q Consensus 56 ~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~ 132 (362)
.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++.. .
T Consensus 40 ~~~~~~~-----~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 40 YRLASDE-----SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp HHHHTCS-----TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred HHHhcCc-----hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 5555543 45678888888776 3445555 7899999999998866554 56788999999999988765 6
Q ss_pred hhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCccc-ccCCC-CCCCcc--cCCcEEEeeCC
Q 045704 133 HASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDN-NITGK-IPPTFP--TSLVELSVRNN 207 (362)
Q Consensus 133 ~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n-~~~~~-~~~~l~--~~L~~L~l~~n 207 (362)
+..+.++++|++|++++|.++. ..+. +..+++|++|++++| .+++. .+..+. ++|++|++++|
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSD------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCH------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred HHHHhhCCCCCEEeCcCcccCH------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 7778889999999998776542 1222 667889999999988 56542 333333 78999999999
Q ss_pred -ccCCC-CcccccCCC-CCCEEEccCC--cCC-CcchhhhcCCCCCcEEEccCCC-CCCCCCCCCcCCCCCCCEEEccCC
Q 045704 208 -NLVGN-VPENFGDME-FLQVLDLSRN--KLS-GTIFSVLFDHPSLQQLTLSYNN-FTSLQVPANMGLTSKLVALELSYN 280 (362)
Q Consensus 208 -~l~~~-~~~~l~~l~-~L~~L~ls~n--~l~-~~~~~~l~~~~~L~~L~L~~n~-l~~~~l~~~~~~~~~L~~L~L~~n 280 (362)
.+++. ++..+..++ +|++|++++| .++ +..+..+..+++|++|++++|. +++ ..+..+..+++|++|++++|
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTC
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCC
Confidence 77743 566678888 9999999998 455 4556677788999999999998 554 34556777899999999999
Q ss_pred c-CCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh--ceeecccccccccCChhhhc
Q 045704 281 E-LGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL--KRLLWGGNYLFGPISGHLMG 336 (362)
Q Consensus 281 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~L~l~~N~l~~~~~~~~~~ 336 (362)
. +.......+..+++|+.|++++| +....-..+.. ..|++++|++++..|..+..
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 33322335778899999999998 55443333322 27888899998888877654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-24 Score=200.97 Aligned_cols=217 Identities=17% Similarity=0.155 Sum_probs=111.5
Q ss_pred ccccccCCCCCCEEeCCCCcCCCCCc----hhhcCCCCCCEEeCcCCcC---Cccchhhh-------cCCCCCcEEEccC
Q 045704 84 LISSKWNLLHLPTLDISDNSFSGSVP----DSLSKLVRRKRLGLSGNSF---KCLIHASV-------GSLSQLEELYLDN 149 (362)
Q Consensus 84 ~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~~---~~~~~~~~-------~~l~~L~~L~L~~ 149 (362)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++|.+ ++.+|..+ .++++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45556677788888888888775533 3466778888888887543 33444443 5677777777777
Q ss_pred CcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc---------------cCCcEEEeeCCccC-CC
Q 045704 150 NDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP---------------TSLVELSVRNNNLV-GN 212 (362)
Q Consensus 150 n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~---------------~~L~~L~l~~n~l~-~~ 212 (362)
|.++..... .++. +..+++|++|++++|.+++..+..+. ++|++|++++|++. ..
T Consensus 104 n~l~~~~~~--------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 104 NAFGPTAQE--------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCCCTTTHH--------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred CcCCHHHHH--------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 665421000 0111 44566777777777766432222222 24555555555554 12
Q ss_pred Cc---ccccCCCCCCEEEccCCcCCC-----cchhhhcCCCCCcEEEccCCCCCC---CCCCCCcCCCCCCCEEEccCCc
Q 045704 213 VP---ENFGDMEFLQVLDLSRNKLSG-----TIFSVLFDHPSLQQLTLSYNNFTS---LQVPANMGLTSKLVALELSYNE 281 (362)
Q Consensus 213 ~~---~~l~~l~~L~~L~ls~n~l~~-----~~~~~l~~~~~L~~L~L~~n~l~~---~~l~~~~~~~~~L~~L~L~~n~ 281 (362)
++ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++. ..+|..+..+++|++|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 22 233444555555555555541 122234445555555555555431 0223334444455555555555
Q ss_pred CCCC----ChhhhcC--CCCCCeEeccCCcCcc
Q 045704 282 LGGF----LPAYLAS--MPNLSALSLEHNKFIG 308 (362)
Q Consensus 282 l~~~----~~~~~~~--l~~L~~L~L~~n~l~~ 308 (362)
+++. ++..+.. +++|+.|++++|++++
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 5432 2333322 4455555555555444
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.2e-22 Score=173.65 Aligned_cols=197 Identities=18% Similarity=0.142 Sum_probs=166.2
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc-CCCCCchhhcCCCCCCEEeCcC-CcCCccchhhhcCCCCCcE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS-FSGSVPDSLSKLVRRKRLGLSG-NSFKCLIHASVGSLSQLEE 144 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~ 144 (362)
..+++.|++++|.+++..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.++...+..|.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4589999999999998777789999999999999997 8866666899999999999998 9999988889999999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCCCCCCCCCC---EEeCccc-ccCCCCCCCcc--cCCc-EEEeeCCccCCCCcccc
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLS---FLDASDN-NITGKIPPTFP--TSLV-ELSVRNNNLVGNVPENF 217 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~--~~L~-~L~l~~n~l~~~~~~~l 217 (362)
|++++|.++ + +|.+..+++|+ +|++++| .+++..+..+. ++|+ +|++++|++. .+|...
T Consensus 110 L~l~~n~l~------------~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 110 LGIFNTGLK------------M-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp EEEEEECCC------------S-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred EeCCCCCCc------------c-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 999988765 2 34466777777 9999999 88865555565 8999 9999999998 454443
Q ss_pred cCCCCCCEEEccCCc-CCCcchhhhcCC-CCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCc
Q 045704 218 GDMEFLQVLDLSRNK-LSGTIFSVLFDH-PSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNE 281 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~-l~~~~~~~l~~~-~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~ 281 (362)
...++|++|++++|+ +++..+..+..+ ++|+.|++++|+++.+ |.. .+++|+.|+++++.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l--~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL--PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC--CCT--TCTTCSEEECTTC-
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC--Chh--HhccCceeeccCcc
Confidence 333899999999995 987778889999 9999999999999864 443 57889999998763
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.9e-24 Score=196.14 Aligned_cols=243 Identities=17% Similarity=0.161 Sum_probs=185.7
Q ss_pred CCeEEEEEecCCCCccccc----ccccCCC-CCCEEeCCCCcCCCCCchhhcCC-----CCCCEEeCcCCcCCccchhhh
Q 045704 67 SARVTEITLDPVGYPGSLI----SSKWNLL-HLPTLDISDNSFSGSVPDSLSKL-----VRRKRLGLSGNSFKCLIHASV 136 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~ 136 (362)
..+++.|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|++|++++|.++...+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4669999999999987666 6788888 99999999999998777777664 999999999999998777644
Q ss_pred ----cCC-CCCcEEEccCCcccCCeeEeecCCCCCCCCCCCC-CCCCCEEeCcccccCCCCCCCcc-------cCCcEEE
Q 045704 137 ----GSL-SQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGS-LKSLSFLDASDNNITGKIPPTFP-------TSLVELS 203 (362)
Q Consensus 137 ----~~l-~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~l~-------~~L~~L~ 203 (362)
..+ ++|++|++++|.++...... ....+.. .++|++|++++|.+++..+..+. ++|++|+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSE-------FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHH-------HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHH-------HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 444 89999999999876321100 0000333 35999999999999865554442 4899999
Q ss_pred eeCCccCCCCcccc----cCC-CCCCEEEccCCcCCCc----chhhhcC-CCCCcEEEccCCCCCCCCC---CCCcCCCC
Q 045704 204 VRNNNLVGNVPENF----GDM-EFLQVLDLSRNKLSGT----IFSVLFD-HPSLQQLTLSYNNFTSLQV---PANMGLTS 270 (362)
Q Consensus 204 l~~n~l~~~~~~~l----~~l-~~L~~L~ls~n~l~~~----~~~~l~~-~~~L~~L~L~~n~l~~~~l---~~~~~~~~ 270 (362)
+++|++.+..+..+ ... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++... ...+..++
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 99999987666544 445 5999999999999863 3444544 4699999999999987422 23456778
Q ss_pred CCCEEEccCCcCCCCCh-------hhhcCCCCCCeEeccCCcCccCCChhhhh
Q 045704 271 KLVALELSYNELGGFLP-------AYLASMPNLSALSLEHNKFIGMIPTQFAL 316 (362)
Q Consensus 271 ~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 316 (362)
+|++|++++|.+.+..+ ..+..+++|+.|++++|++....+..+..
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 99999999999665433 35677889999999999998876655543
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=182.65 Aligned_cols=224 Identities=23% Similarity=0.260 Sum_probs=176.8
Q ss_pred CCeEEEEEecCCCCcccccc---cccCCCCCCEEeCCCCcCCCCCchhh--cCCCCCCEEeCcCCcCCccch----hhhc
Q 045704 67 SARVTEITLDPVGYPGSLIS---SKWNLLHLPTLDISDNSFSGSVPDSL--SKLVRRKRLGLSGNSFKCLIH----ASVG 137 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~ 137 (362)
..+++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888988887643211 12245679999999999998888888 899999999999999987544 4456
Q ss_pred CCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCC--C-CCC-cc--cCCcEEEeeCCccC
Q 045704 138 SLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGK--I-PPT-FP--TSLVELSVRNNNLV 210 (362)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~--~-~~~-l~--~~L~~L~l~~n~l~ 210 (362)
.+++|++|++++|.+. +..+. +..+++|++|++++|.+.+. . +.. +. ++|++|++++|+++
T Consensus 143 ~~~~L~~L~Ls~n~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP------------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp BCSCCCEEEEECCSSC------------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hccCCCEEEeeCCCcc------------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 7899999999977664 34444 88899999999999987541 1 111 12 78999999999996
Q ss_pred CCCcc----cccCCCCCCEEEccCCcCCCcchhhhcCC---CCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCC
Q 045704 211 GNVPE----NFGDMEFLQVLDLSRNKLSGTIFSVLFDH---PSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELG 283 (362)
Q Consensus 211 ~~~~~----~l~~l~~L~~L~ls~n~l~~~~~~~l~~~---~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~ 283 (362)
.++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++. +|..+. ++|++|++++|+++
T Consensus 211 -~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 211 -TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp -CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCC
T ss_pred -chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCC
Confidence 3333 25778999999999999998877666665 799999999999994 466553 79999999999999
Q ss_pred CCChhhhcCCCCCCeEeccCCcCccC
Q 045704 284 GFLPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 284 ~~~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
+. |. +..+++|+.|++++|+++..
T Consensus 286 ~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 286 RA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CC-ch-hhhCCCccEEECcCCCCCCC
Confidence 85 33 57889999999999998753
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.7e-21 Score=168.26 Aligned_cols=154 Identities=25% Similarity=0.255 Sum_probs=95.6
Q ss_pred CCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 175 KSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
+.++.|++++|.+++..+..+. ++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4566666666666655554454 66666666666666555555666666666666666666666566666666666666
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccc
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFG 328 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~ 328 (362)
++|+++.+. +..+..+++|++|++++|.+++.++..+..+++|+.|++++|++++..+..+... .|++++|.+.+
T Consensus 115 ~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666666431 2334556666666666666666555566666666666666666666555444322 66666666654
Q ss_pred c
Q 045704 329 P 329 (362)
Q Consensus 329 ~ 329 (362)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.3e-24 Score=197.67 Aligned_cols=237 Identities=24% Similarity=0.260 Sum_probs=185.9
Q ss_pred CCeEEEEEecCCCCccc----ccccccCCCCCCEEeCCCCcC---CCCCchhh-------cCCCCCCEEeCcCCcCCc--
Q 045704 67 SARVTEITLDPVGYPGS----LISSKWNLLHLPTLDISDNSF---SGSVPDSL-------SKLVRRKRLGLSGNSFKC-- 130 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~n~~~~-- 130 (362)
.++++.|++++|.+++. ++..+..+++|++|++++|.+ .+.+|..+ ..+++|++|+|++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 47799999999999876 344577899999999999754 44556555 789999999999999988
Q ss_pred --cchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCC---------CCCCEEeCcccccCCC-CC---CC
Q 045704 131 --LIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSL---------KSLSFLDASDNNITGK-IP---PT 194 (362)
Q Consensus 131 --~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l---------~~L~~L~l~~n~~~~~-~~---~~ 194 (362)
.++..+.++++|++|++++|.++..... .++. +..+ ++|++|++++|.++.. .+ ..
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 4677889999999999999987522100 0000 2223 7999999999998732 33 12
Q ss_pred cc--cCCcEEEeeCCccCC-----CCcccccCCCCCCEEEccCCcCC----CcchhhhcCCCCCcEEEccCCCCCCC---
Q 045704 195 FP--TSLVELSVRNNNLVG-----NVPENFGDMEFLQVLDLSRNKLS----GTIFSVLFDHPSLQQLTLSYNNFTSL--- 260 (362)
Q Consensus 195 l~--~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~ls~n~l~----~~~~~~l~~~~~L~~L~L~~n~l~~~--- 260 (362)
+. ++|++|++++|++.. ..+..+..+++|++|++++|.++ +.++..+..+++|++|++++|.++..
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 32 799999999999873 23337888999999999999996 56778888999999999999999853
Q ss_pred CCCCCc--CCCCCCCEEEccCCcCCC----CChhhh-cCCCCCCeEeccCCcCccCCC
Q 045704 261 QVPANM--GLTSKLVALELSYNELGG----FLPAYL-ASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 261 ~l~~~~--~~~~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~~ 311 (362)
.++..+ +.+++|++|++++|.+++ .++..+ .++++|+.|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 123444 347899999999999998 366666 668999999999999998875
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.1e-21 Score=171.52 Aligned_cols=191 Identities=24% Similarity=0.314 Sum_probs=164.1
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.++++.|+++++.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++++. ..+.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 5789999999999875 34 688999999999999999854 44 99999999999999999886 3689999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQ 224 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 224 (362)
+++|.++. ++.+..+++|++|++++|.+++..+ +. ++|++|++++|++.+ ++. +..+++|+
T Consensus 114 l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 114 LTSTQITD-------------VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp CTTSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred CCCCCCCC-------------chhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 99888762 2337889999999999999986444 44 899999999999985 434 89999999
Q ss_pred EEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF 285 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~ 285 (362)
+|++++|.+++..+ +..+++|++|++++|+++++ + .+..+++|+.|++++|.+++.
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--S-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC--G-GGTTCTTCCEEEEEEEEEECC
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCcc--c-cccCCCCCCEEEccCCeeecC
Confidence 99999999987654 78899999999999999964 3 378899999999999999874
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=4.3e-21 Score=185.81 Aligned_cols=161 Identities=29% Similarity=0.440 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcccce-ecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhc
Q 045704 35 CLSLWDFSVDPGDHLFSDRFTCGL-RCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLS 113 (362)
Q Consensus 35 ~l~~w~~~~~~c~~~~~~~~~~g~-~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 113 (362)
.+..|..+.++|.. .+..+.++ .|.. .+++.|+++++++++ +|..+. ++|++|++++|.++ .+| .
T Consensus 32 ~l~~W~~~~~~~~~--~~~~~~~l~~C~~-----~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~ 97 (571)
T 3cvr_A 32 AWDKWEKQALPGEN--RNEAVSLLKECLI-----NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---E 97 (571)
T ss_dssp HHHHHHTTCCTTCC--HHHHHHHHHHHHH-----TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---C
T ss_pred HHHHHhccCCcccc--ccchhhhcccccc-----CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---c
Confidence 35567666677731 00011677 6765 689999999999986 676553 78999999999998 566 4
Q ss_pred CCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCC
Q 045704 114 KLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPP 193 (362)
Q Consensus 114 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 193 (362)
.+++|++|++++|.++++ |. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|.
T Consensus 98 ~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~-------------lp~--~l~~L~~L~Ls~N~l~~-lp~ 157 (571)
T 3cvr_A 98 LPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDNNQLTM-------------LPE--LPALLEYINADNNQLTM-LPE 157 (571)
T ss_dssp CCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCSSCCSC-------------CCC--CCTTCCEEECCSSCCSC-CCC
T ss_pred ccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCCCcCCC-------------CCC--cCccccEEeCCCCccCc-CCC
Confidence 578999999999999884 55 555 88888888777651 222 45677777777777664 443
Q ss_pred CcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCC
Q 045704 194 TFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLS 234 (362)
Q Consensus 194 ~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 234 (362)
..++|++|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 158 -~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred -cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 22555555555555553 333 33 45555555555554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.5e-23 Score=186.26 Aligned_cols=233 Identities=19% Similarity=0.190 Sum_probs=185.0
Q ss_pred CeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCC-CchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 68 ARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGS-VPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
.+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..++++++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 7899999999999877555 66799999999999999865 788899999999999999999988889999999999999
Q ss_pred ccCC-cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCccc-ccCCC-CCCCcc--c-CCcEEEeeCCc--cC-CCCccc
Q 045704 147 LDNN-DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDN-NITGK-IPPTFP--T-SLVELSVRNNN--LV-GNVPEN 216 (362)
Q Consensus 147 L~~n-~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n-~~~~~-~~~~l~--~-~L~~L~l~~n~--l~-~~~~~~ 216 (362)
+++| .++.. ..+. +..+++|++|++++| .+++. ++..+. + +|++|++++|. ++ +.++..
T Consensus 149 L~~~~~l~~~-----------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 149 LSGCSGFSEF-----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp CTTCBSCCHH-----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred CCCCCCCCHH-----------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 9988 44311 1222 557899999999999 87753 233333 6 99999999994 44 355667
Q ss_pred ccCCCCCCEEEccCCc-CCCcchhhhcCCCCCcEEEccCCC-CCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC
Q 045704 217 FGDMEFLQVLDLSRNK-LSGTIFSVLFDHPSLQQLTLSYNN-FTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP 294 (362)
Q Consensus 217 l~~l~~L~~L~ls~n~-l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 294 (362)
+..+++|++|++++|. +++..+..+..+++|++|++++|. +.... ...+..+++|++|++++| +.......+. .
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~ 293 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGTLQLLK--E 293 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTCHHHHH--H
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEEeccCc-cCHHHHHHHH--h
Confidence 7889999999999999 777777888999999999999995 33211 124677899999999999 5543333332 2
Q ss_pred CCCeEeccCCcCccCCChhhhh
Q 045704 295 NLSALSLEHNKFIGMIPTQFAL 316 (362)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~~~~~ 316 (362)
+++.|++++|++++..|..+..
T Consensus 294 ~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 294 ALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HSTTSEESCCCSCCTTCSSCSS
T ss_pred hCcceEEecccCccccCCcccc
Confidence 4666778999999998877654
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.2e-20 Score=171.43 Aligned_cols=220 Identities=18% Similarity=0.141 Sum_probs=151.3
Q ss_pred EEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccc-hhhhcCCCCCcEE-EccC
Q 045704 72 EITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLI-HASVGSLSQLEEL-YLDN 149 (362)
Q Consensus 72 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L-~L~~ 149 (362)
.++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+ +.+|.++++++++ .+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4566777777 556655 368999999999999555567999999999999999986644 4578899888764 4444
Q ss_pred CcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeC-CccCCCCcccccCCC-CCC
Q 045704 150 NDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRN-NNLVGNVPENFGDME-FLQ 224 (362)
Q Consensus 150 n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~ 224 (362)
|+ +.+..|. +..+++|++|++++|.+....+..+. .++..+++.+ +.+....+..|..+. .++
T Consensus 90 N~------------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 90 NN------------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp TT------------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred Cc------------ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 44 4445555 88899999999999999865544444 5667777765 455544444566654 578
Q ss_pred EEEccCCcCCCcchhhhcCCCCCcEEEccC-CCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPSLQQLTLSY-NNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEH 303 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 303 (362)
.|++++|.++...+..+ ...+|++|++++ |.++.++ +..+..+++|++|++++|+++..++..+. +|+.|.+.+
T Consensus 158 ~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~ 232 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARS 232 (350)
T ss_dssp EEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTT
T ss_pred hhccccccccCCChhhc-cccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhcc
Confidence 88888888875544443 456788888874 5666432 23467778888888888888875554443 455555544
Q ss_pred CcCccCCC
Q 045704 304 NKFIGMIP 311 (362)
Q Consensus 304 n~l~~~~~ 311 (362)
+.-.+.+|
T Consensus 233 ~~~l~~lP 240 (350)
T 4ay9_X 233 TYNLKKLP 240 (350)
T ss_dssp CTTCCCCC
T ss_pred CCCcCcCC
Confidence 43333444
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.1e-19 Score=152.49 Aligned_cols=161 Identities=23% Similarity=0.209 Sum_probs=98.2
Q ss_pred CCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC
Q 045704 91 LLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY 170 (362)
Q Consensus 91 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~ 170 (362)
.++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.++ +..+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ------------SLPNG 94 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC------------ccCHh
Confidence 357889999999888666666788888888888888888777777778888888888766554 22222
Q ss_pred -CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcE
Q 045704 171 -LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249 (362)
Q Consensus 171 -~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~ 249 (362)
+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQS----------------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred HhcCccCCCEEEcCCCcCcc----------------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 4555556666555555543 22233444555555555555555444444555555555
Q ss_pred EEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCC
Q 045704 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASM 293 (362)
Q Consensus 250 L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 293 (362)
|++++|.+.. .++++++|+++.|.+++.+|..++.+
T Consensus 153 L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 153 IWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp EECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred EEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 5555554432 12345555555555555555544443
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.8e-19 Score=172.18 Aligned_cols=186 Identities=26% Similarity=0.360 Sum_probs=150.5
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCC
Q 045704 93 HLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLG 172 (362)
Q Consensus 93 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~ 172 (362)
+++.|++++|.+++ +|..+ .++|++|++++|.++.+ | ..+++|++|++++|.++ + +|.+.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~------------~-ip~l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLS------------T-LPELP 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS------------C-CCCCC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCC------------C-cchhh
Confidence 89999999999985 67655 37899999999999965 5 45789999999988765 2 23333
Q ss_pred CCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 173 SLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 173 ~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
. +|++|++++|.+++ +|. ..++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L 187 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV 187 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred c--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence 3 89999999999986 666 55899999999999985 555 57899999999999987 444 54 89999999
Q ss_pred cCCCCCCCCCCCCcCCCCCC-------CEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh
Q 045704 253 SYNNFTSLQVPANMGLTSKL-------VALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL 316 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 316 (362)
++|.++. +|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++.+|..+..
T Consensus 188 s~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLES--LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCSS--CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCCc--hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 9999995 465 433 67 999999999997 5666667999999999999999988887765
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2e-19 Score=164.97 Aligned_cols=220 Identities=19% Similarity=0.112 Sum_probs=165.9
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCc-hhhcCCCCCCE-EeCcCCcCCccchhhhcCCCCCcE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVP-DSLSKLVRRKR-LGLSGNSFKCLIHASVGSLSQLEE 144 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~ 144 (362)
..++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+.+|+++.+.|.+|.++++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 4679999999999996656689999999999999999976665 46889998876 566779999998999999999999
Q ss_pred EEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcc-cccCCCCCCCcc---cCCcEEEeeCCccCCCCcccccC
Q 045704 145 LYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASD-NNITGKIPPTFP---TSLVELSVRNNNLVGNVPENFGD 219 (362)
Q Consensus 145 L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~-n~~~~~~~~~l~---~~L~~L~l~~n~l~~~~~~~l~~ 219 (362)
|++++|.+.. ..+. +....++..+++.+ +.+....+..+. ..++.|++++|++. .++.....
T Consensus 109 L~l~~n~l~~------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~ 175 (350)
T 4ay9_X 109 LLISNTGIKH------------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN 175 (350)
T ss_dssp EEEEEECCSS------------CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST
T ss_pred cccccccccc------------CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc
Confidence 9999887652 2222 44556777888866 445533333343 56888999999988 45555455
Q ss_pred CCCCCEEEccC-CcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCe
Q 045704 220 MEFLQVLDLSR-NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSA 298 (362)
Q Consensus 220 l~~L~~L~ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 298 (362)
..+|++|++++ |.++...+..|..+++|++|++++|+++.+ |.. .+.+|+.|.+.++.--..+|. +..+++|+.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l--p~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL--PSY--GLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC--CSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc--Chh--hhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 67889999875 667766667788899999999999999864 442 356777777766643334553 678889999
Q ss_pred EeccCC
Q 045704 299 LSLEHN 304 (362)
Q Consensus 299 L~L~~n 304 (362)
+++.++
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 998764
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.8e-19 Score=149.74 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=108.3
Q ss_pred CCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEcc
Q 045704 176 SLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLS 253 (362)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~ 253 (362)
+|++|++++|.+++..+..+. ++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555533333332 556666666666664444556677778888888887776666667777888888888
Q ss_pred CCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhceeecccccccccCChh
Q 045704 254 YNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGH 333 (362)
Q Consensus 254 ~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~l~~N~l~~~~~~~ 333 (362)
+|+++.+ .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|. ...|+++.|+++|.+|..
T Consensus 109 ~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~---l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 109 TNQLQSL-PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG---IRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp SSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT---THHHHHHHHHCTTTBBCT
T ss_pred CCcCccc-CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC---HHHHHHHHHhCCceeecc
Confidence 8887753 233466777888888888888776666677788888888888887766552 236677788888888887
Q ss_pred hhcCC
Q 045704 334 LMGMK 338 (362)
Q Consensus 334 ~~~~~ 338 (362)
+..+.
T Consensus 185 ~~~l~ 189 (208)
T 2o6s_A 185 AGSVA 189 (208)
T ss_dssp TSSBC
T ss_pred Ccccc
Confidence 77663
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.9e-19 Score=160.84 Aligned_cols=171 Identities=25% Similarity=0.286 Sum_probs=112.1
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.++.
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~------------- 104 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD------------- 104 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-------------
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-------------
Confidence 3456777788887777763 33 46777778888888887777644 7777778888877776541
Q ss_pred CCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCC
Q 045704 168 FPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHP 245 (362)
Q Consensus 168 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (362)
++.+..+++|++|++++|.+++. + .+. ++|+.|++++|++.+. ..+..+++|++|++++|.+++..+ +..++
T Consensus 105 ~~~l~~l~~L~~L~L~~n~i~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHNGISDI-N-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCC-G-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred ChhhccCCCCCEEECCCCcCCCC-h-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence 23366677777777777776642 2 222 6666666666666543 456666777777777777765544 66667
Q ss_pred CCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCC
Q 045704 246 SLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGG 284 (362)
Q Consensus 246 ~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~ 284 (362)
+|+.|++++|.++++ + .+..+++|+.|++++|++..
T Consensus 179 ~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBC--G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCC--h-hhccCCCCCEEECcCCcccC
Confidence 777777777776643 3 25566667777777776655
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=8.4e-19 Score=171.40 Aligned_cols=186 Identities=24% Similarity=0.268 Sum_probs=138.0
Q ss_pred EEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcc
Q 045704 73 ITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152 (362)
Q Consensus 73 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 152 (362)
+.+..+.+.+.+ .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344444554432 24567888888998888873 44 58888899999999988888754 78888899999888776
Q ss_pred cCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccC
Q 045704 153 QGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSR 230 (362)
Q Consensus 153 ~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 230 (362)
.. ++.+..+++|+.|++++|.+.+ ++ .+. ++|+.|++++|++.+. ..+..+++|+.|++++
T Consensus 100 ~~-------------l~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 100 KD-------------LSSLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CC-------------CTTSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CC-------------ChhhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 52 3457778888888888888875 32 233 7888888888888754 5677888888888888
Q ss_pred CcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC
Q 045704 231 NKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL 286 (362)
Q Consensus 231 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~ 286 (362)
|.+.+..+ +..+++|+.|+|++|.++++ + .+..+++|+.|+|++|.+.+.+
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEccCCcCcCCc
Confidence 88876665 77788888888888888753 3 4667788888888888877643
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=9.4e-21 Score=185.77 Aligned_cols=284 Identities=12% Similarity=0.074 Sum_probs=178.9
Q ss_pred CCeEEEEEecCCCCccc----ccccccCCCCCCEEeCCCCcCCC----CCchhhcCCCCCCEEeCcCCcCCccchhhhcC
Q 045704 67 SARVTEITLDPVGYPGS----LISSKWNLLHLPTLDISDNSFSG----SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGS 138 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 138 (362)
.++++.|++++|.+++. ++..+.++++|++|++++|.+.+ .++..+.++++|++|++++|.+.+. +..+.+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHHhh
Confidence 47899999999987654 44455678899999999998873 3445566789999999999888764 677777
Q ss_pred CCCCcEEEccCCccc---------------CCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCC-----------
Q 045704 139 LSQLEELYLDNNDFQ---------------GPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKI----------- 191 (362)
Q Consensus 139 l~~L~~L~L~~n~l~---------------~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~----------- 191 (362)
+++|++|+++..... -..+.+..+.. +.+|. +..+++|++|++++|.+++..
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 888888887632111 00122222111 11111 333445555555554432111
Q ss_pred -------------CCCc-c--cCCcEEEeeC-----------CccCCC-CcccccCCCCCCEEEccCCcCCCcchhhhcC
Q 045704 192 -------------PPTF-P--TSLVELSVRN-----------NNLVGN-VPENFGDMEFLQVLDLSRNKLSGTIFSVLFD 243 (362)
Q Consensus 192 -------------~~~l-~--~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 243 (362)
...+ . ++|++|++++ +.++.. ++.....+++|++|+++.|.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 1111 1 5677777773 333322 1122345778888888777777766666654
Q ss_pred -CCCCcEEEcc----CCCCCCCC----CCCCcCCCCCCCEEEccCCc--CCCCChhhh-cCCCCCCeEeccCCcCccCCC
Q 045704 244 -HPSLQQLTLS----YNNFTSLQ----VPANMGLTSKLVALELSYNE--LGGFLPAYL-ASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 244 -~~~L~~L~L~----~n~l~~~~----l~~~~~~~~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+++|+.|+++ .|.+++.+ ++..+..+++|++|++++|. +++..+..+ ..+++|++|++++|++++...
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 7888888886 55666431 12224557889999997543 555444444 347899999999999876432
Q ss_pred hhh-h----hceeecccccccccCCh-hhhcCCCCCcEEEecCCCCCC
Q 045704 312 TQF-A----LKRLLWGGNYLFGPISG-HLMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 312 ~~~-~----~~~L~l~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~l~~ 353 (362)
..+ . ..+|++++|.+++.... ....+ ++|++|+|++|+++.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL-PSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC-SSCCEEEEESCBCCT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhc-CccCeeECcCCcCCH
Confidence 222 1 22899999998766444 44567 799999999999874
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=7.1e-18 Score=145.22 Aligned_cols=161 Identities=22% Similarity=0.165 Sum_probs=113.1
Q ss_pred CCCCCCCCCCCCCCCCCcccceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCC
Q 045704 37 SLWDFSVDPGDHLFSDRFTCGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLV 116 (362)
Q Consensus 37 ~~w~~~~~~c~~~~~~~~~~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 116 (362)
..|..+...|.| .+|.|.. +.++ .+|..+. ++|++|++++|.+.+..|..|.+++
T Consensus 10 ~~~~~~~~~Cs~-------~~v~c~~---------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~ 64 (229)
T 3e6j_A 10 SAACPSQCSCSG-------TTVDCRS---------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI 64 (229)
T ss_dssp -CCCCTTCEEET-------TEEECTT---------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hccCCCCCEEeC-------CEeEccC---------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc
Confidence 345556778888 7888865 3333 3344332 7899999999999988888899999
Q ss_pred CCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCc
Q 045704 117 RRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTF 195 (362)
Q Consensus 117 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l 195 (362)
+|++|+|++|+++...+..|.++++|++|+|++|.++ +..+. +..+++|++|++++|.++ .+|..+
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~------------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC------------ccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 9999999999998887778889999999999877664 23333 667778888888887777 455544
Q ss_pred c--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCC
Q 045704 196 P--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSG 235 (362)
Q Consensus 196 ~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 235 (362)
. ++|++|++++|++.+..+..+..+++|+.|++++|.+..
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 4 556666666666554444445555666666666665543
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=159.85 Aligned_cols=151 Identities=26% Similarity=0.221 Sum_probs=96.3
Q ss_pred CCCEEeCcccccCCCCCCCc--c-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 176 SLSFLDASDNNITGKIPPTF--P-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~~l--~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
.++.|++++|.+++..+..+ . ++|++|++++|++.+..+..|.++++|++|++++|.+++..+..|..+++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 46677777777765544444 2 66777777777776555566677777777777777776666666666777777777
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhh---cCCCCCCeEeccCCcCccCCChhhhhc------eeeccc
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL---ASMPNLSALSLEHNKFIGMIPTQFALK------RLLWGG 323 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~------~L~l~~ 323 (362)
++|+++.+ .+..+..+++|++|+|++|.+++.++..+ ..+++|+.|+|++|++++..+..+... .|++++
T Consensus 120 ~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 120 YNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 77777653 24556666777777777777776555544 456677777777777766555444322 466666
Q ss_pred cccc
Q 045704 324 NYLF 327 (362)
Q Consensus 324 N~l~ 327 (362)
|.+.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 6664
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.3e-18 Score=151.44 Aligned_cols=169 Identities=25% Similarity=0.265 Sum_probs=144.2
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++.|+++++.+... +.+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++. ..+.++++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 57789999999998754 358889999999999999995444 99999999999999999885 3489999999999
Q ss_pred ccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCC
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQ 224 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 224 (362)
+++|.++. ++.+..+++|++|++++|.+++. ..+. ++|++|++++|++.+..+ +..+++|+
T Consensus 119 L~~n~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 119 LEHNGISD-------------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp CTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCCcCCC-------------ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 99888762 23477889999999999999864 3344 899999999999986544 89999999
Q ss_pred EEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSL 260 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 260 (362)
+|++++|.+++. + .+..+++|+.|++++|.++..
T Consensus 182 ~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 182 NLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred EEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 999999999865 3 488999999999999998863
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=9.9e-18 Score=143.40 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=104.3
Q ss_pred EEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCc
Q 045704 72 EITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNND 151 (362)
Q Consensus 72 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 151 (362)
.+++++++++ .+|..+. +++++|++++|.|.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 5677777776 4555443 689999999999997667789999999999999999999888899999999999999777
Q ss_pred ccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccC
Q 045704 152 FQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSR 230 (362)
Q Consensus 152 l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~ 230 (362)
++ +..+. +..+++|++|++++|.+++..+. .|..+++|++|++++
T Consensus 92 l~------------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 92 IT------------ELPKSLFEGLFSLQLLLLNANKINCLRVD----------------------AFQDLHNLNLLSLYD 137 (220)
T ss_dssp CC------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT----------------------TTTTCTTCCEEECCS
T ss_pred CC------------ccCHhHccCCCCCCEEECCCCCCCEeCHH----------------------HcCCCCCCCEEECCC
Confidence 64 23333 56677777777777776654444 344445555555555
Q ss_pred CcCCCcchhhhcCCCCCcEEEccCCCCC
Q 045704 231 NKLSGTIFSVLFDHPSLQQLTLSYNNFT 258 (362)
Q Consensus 231 n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 258 (362)
|.+++..+..+..+++|+.|++++|.+.
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555444444555555555555555543
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=9e-20 Score=178.81 Aligned_cols=283 Identities=13% Similarity=0.097 Sum_probs=170.4
Q ss_pred CeEEEEEecCCC-Ccc-cccccccCCCCCCEEeCCCCcCCCC----CchhhcCCCCCCEEeCcCCcCCc----cchhhhc
Q 045704 68 ARVTEITLDPVG-YPG-SLISSKWNLLHLPTLDISDNSFSGS----VPDSLSKLVRRKRLGLSGNSFKC----LIHASVG 137 (362)
Q Consensus 68 ~~l~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~ 137 (362)
.++++|++++|. ++. .++....++++|++|++++|.+.+. ++..+..+++|++|++++|.+++ ..+..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 349999999886 221 2333445789999999999998765 44556789999999999999973 3445567
Q ss_pred CCCCCcEEEccCCcccCC-----------eeEeecCCCC----CCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCc
Q 045704 138 SLSQLEELYLDNNDFQGP-----------RLEIRQNSIS----SEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLV 200 (362)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~-----------~l~l~~n~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~ 200 (362)
++++|++|++++|.+.+. .+.++..... .....+..+++|+.+++.++... .++..+. ++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCc
Confidence 889999999999987553 4555432211 11123777889999988875433 4454444 7999
Q ss_pred EEEeeCCccCCCCc-ccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccC-----------CCCCCCCCCCCcCC
Q 045704 201 ELSVRNNNLVGNVP-ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY-----------NNFTSLQVPANMGL 268 (362)
Q Consensus 201 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~-----------n~l~~~~l~~~~~~ 268 (362)
+|++++|.+.+... ..+..+++|++|+++++...+..+.....+++|++|++++ +.++...++.....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999998653322 3356677777777763322222233334456666666662 33332111111222
Q ss_pred -------------------------CCCCCEEEcc----CCcCCCC-----ChhhhcCCCCCCeEeccCCc--CccCCCh
Q 045704 269 -------------------------TSKLVALELS----YNELGGF-----LPAYLASMPNLSALSLEHNK--FIGMIPT 312 (362)
Q Consensus 269 -------------------------~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~ 312 (362)
+++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 3445555553 3344432 22223445555555554322 3333322
Q ss_pred hhhh-----ceeeccccccccc-CChhhhcCCCCCcEEEecCCCCC
Q 045704 313 QFAL-----KRLLWGGNYLFGP-ISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 313 ~~~~-----~~L~l~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
.+.. .+|++++|++++. ++..+..+ ++|++|+|++|.++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGC-PNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCC-TTCCEEEEESCCCB
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcC-cccCeeeccCCCCc
Confidence 2222 2778888877763 34444566 68888888888865
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9e-18 Score=143.65 Aligned_cols=136 Identities=23% Similarity=0.253 Sum_probs=114.7
Q ss_pred CCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 175 KSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
++|++|++++|.+++..+..+. ++|++|++++|++.+..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 6789999999998866665665 78999999999998777888999999999999999998777777888899999999
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
++|+++.+ .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.....
T Consensus 112 ~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEe-CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99998874 35677888899999999999998877788888999999999998876543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=9.6e-18 Score=154.42 Aligned_cols=172 Identities=23% Similarity=0.217 Sum_probs=134.1
Q ss_pred EEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhc-CCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 72 EITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLS-KLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 72 ~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
.+++++++++. +|..+. +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 67788888774 565443 4589999999999977777777 8999999999999999988888999999999999977
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccc---cCCCCCC
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENF---GDMEFLQ 224 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l---~~l~~L~ 224 (362)
.++ +..+. +..+++|++|++++|.++...+..+. ++|++|++++|++.+..+..+ ..+++|+
T Consensus 99 ~l~------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 99 HLH------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CCC------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred cCC------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 765 23343 77889999999999998876666666 788888888888885444444 5678888
Q ss_pred EEEccCCcCCCcchhhhcCCCC--CcEEEccCCCCC
Q 045704 225 VLDLSRNKLSGTIFSVLFDHPS--LQQLTLSYNNFT 258 (362)
Q Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~--L~~L~L~~n~l~ 258 (362)
.|++++|.+++..+..+..++. ++.|++++|.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888888888777677777766 477888888765
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.7e-17 Score=141.56 Aligned_cols=135 Identities=25% Similarity=0.261 Sum_probs=105.6
Q ss_pred CCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 175 KSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
++|++|++++|.+++..+..+. ++|++|++++|++....+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4555666666665554454444 56666677777766444556788889999999999998877777888899999999
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 120 s~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999988 457778888999999999999998777788889999999999999987765
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=141.03 Aligned_cols=136 Identities=21% Similarity=0.178 Sum_probs=107.9
Q ss_pred CCCEEeCcccccCCCCCC-Ccc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEc
Q 045704 176 SLSFLDASDNNITGKIPP-TFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTL 252 (362)
Q Consensus 176 ~L~~L~l~~n~~~~~~~~-~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L 252 (362)
.+++|++++|.+++..+. .+. ++|++|++++|++.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 345666666666544332 233 67777777777777666667888899999999999998888888888999999999
Q ss_pred cCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCCh
Q 045704 253 SYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPT 312 (362)
Q Consensus 253 ~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 312 (362)
++|+++++ .|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+-
T Consensus 113 s~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 113 RSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999874 366778888999999999999988888899999999999999999877653
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=142.56 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=128.2
Q ss_pred CEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCc-ccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC
Q 045704 178 SFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVP-ENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256 (362)
Q Consensus 178 ~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 256 (362)
+.+++++|.++ .+|..+...+++|++++|++.+..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcc-cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57888888887 5777777888999999999986644 457889999999999999998888889999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCC
Q 045704 257 FTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPIS 331 (362)
Q Consensus 257 l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~ 331 (362)
++.+ .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+... .|++++|.+....+
T Consensus 93 l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 93 LENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9874 24557888999999999999999888889999999999999999998888776543 78888888875443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.6e-17 Score=162.44 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=160.5
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCC
Q 045704 92 LHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYL 171 (362)
Q Consensus 92 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~ 171 (362)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|++|+|++|.+.. .. .+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~------------~~-~l 83 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD------------IK-PL 83 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCC------------CG-GG
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCC------------Ch-hh
Confidence 445667788888774433 56789999999999999876 3 58899999999999887652 22 27
Q ss_pred CCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcE
Q 045704 172 GSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQ 249 (362)
Q Consensus 172 ~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~ 249 (362)
..+++|+.|++++|.+.+ ++ .+. ++|+.|++++|++.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence 789999999999999985 33 344 899999999999985 3 5688999999999999999876 56889999999
Q ss_pred EEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCCh
Q 045704 250 LTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPT 312 (362)
Q Consensus 250 L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 312 (362)
|+|++|.+.++ +. +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+.+..
T Consensus 158 L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 158 LSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp EECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred EECcCCcCCCc--hh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 99999999974 33 78899999999999999984 3588999999999999999876443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=139.77 Aligned_cols=154 Identities=16% Similarity=0.311 Sum_probs=107.8
Q ss_pred cCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCC
Q 045704 113 SKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIP 192 (362)
Q Consensus 113 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 192 (362)
..+++|++|++++|.++.. | .+..+++|++|++++|.+. .++.+..++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-------------~~~~l~~l~----------------- 88 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-------------NYNPISGLS----------------- 88 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-------------CCGGGTTCT-----------------
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-------------cchhhhcCC-----------------
Confidence 4566777777777777744 3 4667777777777766443 111233344
Q ss_pred CCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC-CCCCCCCCCcCCCCC
Q 045704 193 PTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN-FTSLQVPANMGLTSK 271 (362)
Q Consensus 193 ~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~l~~~~~~~~~ 271 (362)
+|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++.+ + .+..+++
T Consensus 89 -----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~ 160 (197)
T 4ezg_A 89 -----NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPE 160 (197)
T ss_dssp -----TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSS
T ss_pred -----CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCC
Confidence 45555555555554555667778888888888888887777888888889999999887 6653 4 5677888
Q ss_pred CCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCcc
Q 045704 272 LVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 272 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 308 (362)
|++|++++|.+++. + .+..+++|+.|++++|++.+
T Consensus 161 L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 99999999988874 3 67788899999999988764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.6e-18 Score=148.54 Aligned_cols=167 Identities=21% Similarity=0.245 Sum_probs=95.6
Q ss_pred EEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccC
Q 045704 70 VTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149 (362)
Q Consensus 70 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 149 (362)
++.++++.+.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +.++++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344455555554322 4555666666666666665 333 45666666666666666665533 56666666666665
Q ss_pred CcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEcc
Q 045704 150 NDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLS 229 (362)
Q Consensus 150 n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 229 (362)
|.++. ++.+.. ++|++|++++|++.+ + ..+..+++|++|+++
T Consensus 95 N~l~~-------------l~~~~~-----------------------~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 95 NRLKN-------------LNGIPS-----------------------ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIR 136 (263)
T ss_dssp SCCSC-------------CTTCCC-----------------------SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECT
T ss_pred CccCC-------------cCcccc-----------------------CcccEEEccCCccCC-C-hhhcCcccccEEECC
Confidence 55431 111111 455555555555543 2 245666677777777
Q ss_pred CCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCC
Q 045704 230 RNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGF 285 (362)
Q Consensus 230 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~ 285 (362)
+|.+++.. .+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+.
T Consensus 137 ~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSIV--MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBCG--GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCCh--HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 77766542 456666777777777776653 3455666677777777766654
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4.1e-17 Score=136.49 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=131.3
Q ss_pred CEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcc-cccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC
Q 045704 178 SFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPE-NFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256 (362)
Q Consensus 178 ~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 256 (362)
+.++++++.++ .+|..+..++++|++++|++.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67788888776 57776767899999999998866554 48899999999999999999889999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc---eeecccccccccCChh
Q 045704 257 FTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK---RLLWGGNYLFGPISGH 333 (362)
Q Consensus 257 l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~L~l~~N~l~~~~~~~ 333 (362)
++++ .+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+...-.. ...+..+......|..
T Consensus 90 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 90 IKEI-SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CCEE-CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCcc-CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 9974 35567888999999999999999889999999999999999999998766432211 2233444444455555
Q ss_pred hhcCCCCCcEEEecCCCCCC
Q 045704 334 LMGMKPGFANVSLVDNCLYM 353 (362)
Q Consensus 334 ~~~~~~~L~~L~L~~N~l~~ 353 (362)
+.+. ...++..+.++.
T Consensus 169 l~~~----~l~~l~~~~~~C 184 (192)
T 1w8a_A 169 VRDV----QIKDLPHSEFKC 184 (192)
T ss_dssp TTTS----BGGGSCTTTCCC
T ss_pred HcCC----ChhhCcHhhcCc
Confidence 5333 334455565553
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=139.90 Aligned_cols=155 Identities=20% Similarity=0.302 Sum_probs=107.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCC
Q 045704 88 KWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSE 167 (362)
Q Consensus 88 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~ 167 (362)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++.. ..+..+++|++|++++|.++.. .
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~-----------~ 104 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSD-----------K 104 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGG-----------G
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcc-----------c
Confidence 367789999999999998 566 689999999999999977654 4789999999999998876520 1
Q ss_pred CCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCc-CCCcchhhhcCCCC
Q 045704 168 FPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNK-LSGTIFSVLFDHPS 246 (362)
Q Consensus 168 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~~~~ 246 (362)
++.+..+++|++|++++|.+++ ..+..+..+++|++|++++|. ++. ++ .+..+++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~----------------------~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~ 160 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDD----------------------SILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPE 160 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBG----------------------GGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSS
T ss_pred ChhhcCCCCCCEEEecCCccCc----------------------HhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCC
Confidence 2236666677777666666553 344555666667777777766 443 33 4566677
Q ss_pred CcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCC
Q 045704 247 LQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGG 284 (362)
Q Consensus 247 L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~ 284 (362)
|+.|++++|.++++ + .+..+++|++|++++|++.+
T Consensus 161 L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC----
T ss_pred CCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcccCC
Confidence 77777777776653 2 45566677777777776653
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.6e-19 Score=177.07 Aligned_cols=81 Identities=11% Similarity=-0.008 Sum_probs=37.9
Q ss_pred CCCCCEEEccCCcCCCCChhhhcC-CCCCCeEeccCCcCccCCChhhh----h-ceeecccccccccCChhhh-cCCCCC
Q 045704 269 TSKLVALELSYNELGGFLPAYLAS-MPNLSALSLEHNKFIGMIPTQFA----L-KRLLWGGNYLFGPISGHLM-GMKPGF 341 (362)
Q Consensus 269 ~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~----~-~~L~l~~N~l~~~~~~~~~-~~~~~L 341 (362)
+++|++|++++ .+++..+..+.. +++|+.|++++|.+++.....+. . .+|++++|.+++..+..+. .+ ++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l-~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL-ETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG-GGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC-CCC
Confidence 34455555544 333322223322 45566666666655443332221 1 1566666665443333222 24 466
Q ss_pred cEEEecCCCC
Q 045704 342 ANVSLVDNCL 351 (362)
Q Consensus 342 ~~L~L~~N~l 351 (362)
++|++++|++
T Consensus 509 ~~L~l~~~~~ 518 (594)
T 2p1m_B 509 RSLWMSSCSV 518 (594)
T ss_dssp SEEEEESSCC
T ss_pred CEEeeeCCCC
Confidence 6666666655
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.4e-20 Score=182.88 Aligned_cols=190 Identities=17% Similarity=0.117 Sum_probs=132.0
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCc-------------CCccchhhhcCCCCCcEEE-ccCCcccC
Q 045704 89 WNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNS-------------FKCLIHASVGSLSQLEELY-LDNNDFQG 154 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~l~~ 154 (362)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788899999999887 788888889999999887664 4556677777777888777 5544432
Q ss_pred CeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCC
Q 045704 155 PRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLS 234 (362)
Q Consensus 155 ~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 234 (362)
.|+.+.+.+|.++...+ ..|+.|++++|++++ +|. +..+++|+.|++++|.++
T Consensus 424 ---------------------~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 424 ---------------------DLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred ---------------------hhhhhhhhcccccccCc----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 33444444444432111 346677777777764 454 777777777777777777
Q ss_pred CcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCC-hhhhcCCCCCCeEeccCCcCccCCC
Q 045704 235 GTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFL-PAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 235 ~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
.+|..+..+++|+.|+|++|.++++ | .++.+++|++|++++|.+++.. |..+..+++|+.|++++|++++.+|
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALENV--D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -ccchhhhcCCCCCEEECCCCCCCCC--c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5566677777777777777777753 4 5667777777777777777765 6777777777777777777766554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=146.35 Aligned_cols=145 Identities=23% Similarity=0.298 Sum_probs=104.0
Q ss_pred CCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 66 GSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 66 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
...+++.|++++|.++. ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|++++..+ +.. ++|++|
T Consensus 39 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEE
T ss_pred hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCc--ccc-CcccEE
Confidence 45789999999999974 44 788999999999999999954 44 9999999999999999998633 333 899999
Q ss_pred EccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCC
Q 045704 146 YLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFL 223 (362)
Q Consensus 146 ~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L 223 (362)
++++|.++. ++.+..+++|++|++++|.+++. + .+. ++|++|++++|++.+. ..+..+++|
T Consensus 112 ~L~~N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 112 FLDNNELRD-------------TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp ECCSSCCSB-------------SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred EccCCccCC-------------ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 999888762 23467788888888888877642 2 222 4555555555555433 334444555
Q ss_pred CEEEccCCcCC
Q 045704 224 QVLDLSRNKLS 234 (362)
Q Consensus 224 ~~L~ls~n~l~ 234 (362)
+.|++++|.+.
T Consensus 175 ~~L~l~~N~~~ 185 (263)
T 1xeu_A 175 NWIDLTGQKCV 185 (263)
T ss_dssp CEEEEEEEEEE
T ss_pred CEEeCCCCccc
Confidence 55555555444
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=2.3e-19 Score=175.93 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=173.4
Q ss_pred CCeEEEEEecCC-CCccc-ccccccCCCCCCEEeCCCCcCCCCCchhhc----CCCCCCEEeCcCCc--CCcc-chhhhc
Q 045704 67 SARVTEITLDPV-GYPGS-LISSKWNLLHLPTLDISDNSFSGSVPDSLS----KLVRRKRLGLSGNS--FKCL-IHASVG 137 (362)
Q Consensus 67 ~~~l~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--~~~~-~~~~~~ 137 (362)
.++++.|++.+| .+++. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +... ....+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 478889999888 45433 344445788999999998887755444333 56788888888886 2211 122234
Q ss_pred CCCCCcEEEccCCc-ccC-----------CeeEeecCC--------------------------CCC----CCCC-CCCC
Q 045704 138 SLSQLEELYLDNND-FQG-----------PRLEIRQNS--------------------------ISS----EFPY-LGSL 174 (362)
Q Consensus 138 ~l~~L~~L~L~~n~-l~~-----------~~l~l~~n~--------------------------~~~----~~~~-~~~l 174 (362)
++++|++|++++|. +.+ ..+.++.+. +.. .++. +..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 56888888888762 110 122221110 100 1111 2246
Q ss_pred CCCCEEeCcccccCCCCCCCcc---cCCcEEEeeCCccCCC-CcccccCCCCCCEEEccC---------CcCCCcchhhh
Q 045704 175 KSLSFLDASDNNITGKIPPTFP---TSLVELSVRNNNLVGN-VPENFGDMEFLQVLDLSR---------NKLSGTIFSVL 241 (362)
Q Consensus 175 ~~L~~L~l~~n~~~~~~~~~l~---~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~---------n~l~~~~~~~l 241 (362)
++|++|++++|.+++.....+. ++|++|++++| +... ++.....+++|++|++.+ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 8899999999886543222211 78999999887 3321 222233578888888833 44544333333
Q ss_pred c-CCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEcc--C----CcCCCC-----ChhhhcCCCCCCeEeccCCcCccC
Q 045704 242 F-DHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELS--Y----NELGGF-----LPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 242 ~-~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
. .+++|+.|.++.+.++...+......+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 3 478888888888887653222222346788888888 4 455532 223356678888888877 56554
Q ss_pred CChhhhh-----ceeecccccccccCChhh-hcCCCCCcEEEecCCCCC
Q 045704 310 IPTQFAL-----KRLLWGGNYLFGPISGHL-MGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 310 ~~~~~~~-----~~L~l~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~l~ 352 (362)
....+.. ..|++++|.+++..+..+ ..+ ++|++|+|++|.++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~-~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC-DSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC-TTCCEEEEESCSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC-CCcCEEECcCCCCc
Confidence 4444432 288888888877666555 556 68888898888875
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.3e-17 Score=166.81 Aligned_cols=222 Identities=20% Similarity=0.215 Sum_probs=115.2
Q ss_pred cceecCcCCCCCCeEEEEEecCCCCcccccccccCCCCCCEE-----eCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCc
Q 045704 56 CGLRCDRIVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTL-----DISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKC 130 (362)
Q Consensus 56 ~g~~c~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 130 (362)
.+..+.. ++++.|++.++.+... +..+.....|+.+ ++..|.+. ..+..+..+++|+.|+|++|.+..
T Consensus 166 ~~~~~s~-----~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 238 (727)
T 4b8c_D 166 TNSAVST-----PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN 238 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTSCCSC
T ss_pred CCceecC-----CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCC
Confidence 5555544 7899999988887653 4333333333333 33334444 457788999999999999999986
Q ss_pred cchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCC
Q 045704 131 LIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNN 207 (362)
Q Consensus 131 ~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n 207 (362)
+ |..+.++++|++|+|++|.++ .+|. +..+++|++|+|++|.++ .+|..+. ++|++|++++|
T Consensus 239 l-~~~~~~l~~L~~L~Ls~N~l~-------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 239 I-SANIFKYDFLTRLYLNGNSLT-------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp C-CGGGGGCCSCSCCBCTTSCCS-------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred C-ChhhcCCCCCCEEEeeCCcCc-------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 5 566678999999999988765 3444 888999999999999999 6788887 89999999999
Q ss_pred ccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCC-CCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCC------
Q 045704 208 NLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHP-SLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYN------ 280 (362)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n------ 280 (362)
.+. .+|..|..+++|++|++++|.+++.+|..+.... ....+++++|.+++ .+|. .++.|+++.|
T Consensus 304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p~------~l~~l~l~~n~~~~~~ 375 (727)
T 4b8c_D 304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLPH------ERRFIEINTDGEPQRE 375 (727)
T ss_dssp CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCCC------C---------------
T ss_pred CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-cCcc------ccceeEeecccccccc
Confidence 997 7888899999999999999999998888775442 22347889999887 4454 4566677766
Q ss_pred --cCCCCChhhhcCCCCCCeEeccCCcCc
Q 045704 281 --ELGGFLPAYLASMPNLSALSLEHNKFI 307 (362)
Q Consensus 281 --~l~~~~~~~~~~l~~L~~L~L~~n~l~ 307 (362)
.+.+..+..+..+..+....+++|-+.
T Consensus 376 ~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 376 YDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------CCC
T ss_pred cCCccccccchhhcccccceeeeeccccc
Confidence 333334444556666777778888764
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=4.2e-16 Score=127.34 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCCCEEeCcccccC-CCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEE
Q 045704 175 KSLSFLDASDNNIT-GKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251 (362)
Q Consensus 175 ~~L~~L~l~~n~~~-~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~ 251 (362)
++|++|++++|.++ +.+|..+. ++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777765 45565544 7888888888888754 6788889999999999999877777777789999999
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh---hhhcCCCCCCeEeccCCcCccCC
Q 045704 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP---AYLASMPNLSALSLEHNKFIGMI 310 (362)
Q Consensus 252 L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~ 310 (362)
+++|.+++++.+..+..+++|++|++++|.+++.++ ..+..+++|++|++++|.+....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999875333677888899999999999988665 57888999999999999877554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.8e-17 Score=165.67 Aligned_cols=174 Identities=21% Similarity=0.154 Sum_probs=107.0
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
+..++.|+.|++++|.+. .+|..+. ++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 556666677777776666 4444443 77888888888887 77888888889999999999988 5677788888999
Q ss_pred EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCC-CCCeEeccCCcCccCCChhhhhceeecccc---
Q 045704 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMP-NLSALSLEHNKFIGMIPTQFALKRLLWGGN--- 324 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~L~l~~N--- 324 (362)
+|+|++|.++ .+|..++.+++|++|+|++|.+.+.+|..+.... .+..+++++|.+++.+|..+.. |+++.|
T Consensus 297 ~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~--l~l~~n~~~ 372 (727)
T 4b8c_D 297 YFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF--IEINTDGEP 372 (727)
T ss_dssp EEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred EEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccce--eEeeccccc
Confidence 9999999887 4577788888999999999999887777765432 2234778889998888876543 444444
Q ss_pred -----cccccCChhhhcCCCCCcEEEecCCCCC
Q 045704 325 -----YLFGPISGHLMGMKPGFANVSLVDNCLY 352 (362)
Q Consensus 325 -----~l~~~~~~~~~~~~~~L~~L~L~~N~l~ 352 (362)
.+.+..+..+..+ ..+....++.|-+.
T Consensus 373 ~~~~~~l~~~~~~~~~~l-~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 373 QREYDSLQQSTEHLATDL-AKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------CCC
T ss_pred ccccCCccccccchhhcc-cccceeeeeccccc
Confidence 3333344444455 35666677777764
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=127.03 Aligned_cols=131 Identities=22% Similarity=0.344 Sum_probs=114.8
Q ss_pred CEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC
Q 045704 178 SFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257 (362)
Q Consensus 178 ~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 257 (362)
+.++++++.++ .+|..+.+++++|++++|++. .+|..+.++++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56788888877 577777788999999999998 7778899999999999999999988888899999999999999999
Q ss_pred CCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 258 TSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 258 ~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+.+ .+..+..+++|++|++++|.+++.++..|..+++|+.|++++|++.....
T Consensus 91 ~~i-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 91 RCI-PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CBC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEe-CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 974 35568889999999999999998877789999999999999999986543
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2e-15 Score=124.39 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=112.8
Q ss_pred CCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC
Q 045704 177 LSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256 (362)
Q Consensus 177 L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 256 (362)
.+.++++++.++ .+|..+.+++++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 456777777776 4666666889999999999886666678899999999999999998888888899999999999999
Q ss_pred CCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCCh
Q 045704 257 FTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPT 312 (362)
Q Consensus 257 l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 312 (362)
++++ .+..+..+++|++|++++|.+++.++..+..+++|+.|++++|++.+..|.
T Consensus 88 l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 88 LQSL-PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccc-CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 9974 244567889999999999999987777788899999999999999987763
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.1e-16 Score=125.99 Aligned_cols=141 Identities=21% Similarity=0.159 Sum_probs=89.6
Q ss_pred cCCcEEEeeCCccC-CCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEE
Q 045704 197 TSLVELSVRNNNLV-GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVAL 275 (362)
Q Consensus 197 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L 275 (362)
+++++|++++|++. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|+++.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 56667777777665 45566666666667777766666654 4555666666666666666652 34445556666666
Q ss_pred EccCCcCCCCCh-hhhcCCCCCCeEeccCCcCccCCChhhhhceeecccccccccCChhhhcCCCCCcEEEecCCCCCCC
Q 045704 276 ELSYNELGGFLP-AYLASMPNLSALSLEHNKFIGMIPTQFALKRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMC 354 (362)
Q Consensus 276 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~ 354 (362)
++++|.+++... ..+..+++|+.|++++|++++..+.. ...+..+ ++|++|++++|.+.++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-----------------~~~~~~l-~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR-----------------ESVFKLL-PQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH-----------------HHHHTTC-SSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH-----------------HHHHHhC-ccCcEecCCCCChhhc
Confidence 666666665322 45566666666666666554332210 0356677 7999999999999999
Q ss_pred CCcc
Q 045704 355 PEMF 358 (362)
Q Consensus 355 P~~~ 358 (362)
|+.-
T Consensus 163 ~~~~ 166 (168)
T 2ell_A 163 PDSD 166 (168)
T ss_dssp CSSS
T ss_pred cccc
Confidence 8764
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.6e-18 Score=168.35 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=147.1
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc-------------CCCCCchhhcCCCCCCEEe-CcCCcCCccc
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS-------------FSGSVPDSLSKLVRRKRLG-LSGNSFKCLI 132 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~~~~~~ 132 (362)
.++++.|++++|.++ .+|..++++++|++|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 345567778888776 789999999999999997775 4566778888899999988 6655432
Q ss_pred hhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC
Q 045704 133 HASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV 210 (362)
Q Consensus 133 ~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~ 210 (362)
.|+.+.+++|.++. .. ...|+.|++++|.+++ +|. +. ++|+.|++++|++.
T Consensus 424 --------~L~~l~l~~n~i~~------------l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK------------ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp --------HHHHHHHHHHHHHH------------HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred --------hhhhhhhhcccccc------------cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 23334444444331 00 1236667777777664 454 44 67888888888887
Q ss_pred CCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChh--
Q 045704 211 GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPA-- 288 (362)
Q Consensus 211 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~-- 288 (362)
.+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++++..|..++.+++|+.|++++|.+++.++.
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 778888888999999999998886 45 6888899999999999988643377888888999999999988876442
Q ss_pred -hhcCCCCCCeEec
Q 045704 289 -YLASMPNLSALSL 301 (362)
Q Consensus 289 -~~~~l~~L~~L~L 301 (362)
.+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 3445788888864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6.6e-16 Score=123.55 Aligned_cols=127 Identities=24% Similarity=0.244 Sum_probs=82.3
Q ss_pred CCCCEEeCcccccC-CCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEE
Q 045704 175 KSLSFLDASDNNIT-GKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLT 251 (362)
Q Consensus 175 ~~L~~L~l~~n~~~-~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~ 251 (362)
++|+.|++++|.++ +.+|..+. ++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 33443333 5555555555555533 5566777777788877777766666666677788888
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh---hhhcCCCCCCeEeccC
Q 045704 252 LSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP---AYLASMPNLSALSLEH 303 (362)
Q Consensus 252 L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 303 (362)
+++|.+++++.+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888877754333566777778888888887777555 4677778888877753
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.6e-15 Score=137.65 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=117.7
Q ss_pred CeEEEEEecCCCCcccccccccC-CCCCCEEeCCCCcCC--------------------CCCchhhcC--------CCCC
Q 045704 68 ARVTEITLDPVGYPGSLISSKWN-LLHLPTLDISDNSFS--------------------GSVPDSLSK--------LVRR 118 (362)
Q Consensus 68 ~~l~~L~l~~~~l~~~~~~~~~~-l~~L~~L~L~~n~i~--------------------~~~~~~~~~--------l~~L 118 (362)
.+++.|.+.++ +...-...+.. +++|++|||++|++. ...+.+|.+ +++|
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45666666543 21111112222 566777777777766 112345666 7888
Q ss_pred CEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCccccc----CCCCCC
Q 045704 119 KRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNI----TGKIPP 193 (362)
Q Consensus 119 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~----~~~~~~ 193 (362)
+.|+|.+ .++.+...+|.++++|+++++.+|.+.. +.+. |..+.++..+....+.. ......
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~------------i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN------------LLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE------------ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccc------------cchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 8888877 7777777778888888888887766541 1112 44444555544433111 000011
Q ss_pred Ccc----------------------------cCCcEEEeeCCccCCCCcccc-cCCCCCCEEEccCCcCCCcchhhhcCC
Q 045704 194 TFP----------------------------TSLVELSVRNNNLVGNVPENF-GDMEFLQVLDLSRNKLSGTIFSVLFDH 244 (362)
Q Consensus 194 ~l~----------------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~l~~~ 244 (362)
.|. .++..+.+.++-.. .....+ ..+++|+++++++|.++......|.++
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 110 11222222211000 000000 124566666666666665555666666
Q ss_pred CCCcEEEccCCCCCCCCCCCCcCCCCCCC-EEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhh
Q 045704 245 PSLQQLTLSYNNFTSLQVPANMGLTSKLV-ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQF 314 (362)
Q Consensus 245 ~~L~~L~L~~n~l~~~~l~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 314 (362)
++|+.+++.+| ++.+. +..+..+++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+..|
T Consensus 250 ~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred CCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 66666666665 44322 23455556666 666665 5555555666666666666666666665555444
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.7e-14 Score=120.55 Aligned_cols=104 Identities=21% Similarity=0.223 Sum_probs=75.0
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCch-hhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPD-SLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 149 (362)
+.+++++++++ .+|..+.. ++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56788888885 56665543 889999999998865554 488889999999999999888888888888888888887
Q ss_pred CcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCC
Q 045704 150 NDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITG 189 (362)
Q Consensus 150 n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~ 189 (362)
|.++ +..+. +..+++|++|++++|.+++
T Consensus 88 N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 88 NKIK------------EISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp CCCC------------EECSSSSTTCTTCCEEECCSSCCCE
T ss_pred CcCC------------ccCHHHhcCCCCCCEEECCCCcCCe
Confidence 6654 22333 5555555555555555543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=8.7e-15 Score=116.98 Aligned_cols=124 Identities=23% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCCCEEEccCCcCC-CcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeE
Q 045704 221 EFLQVLDLSRNKLS-GTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSAL 299 (362)
Q Consensus 221 ~~L~~L~ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 299 (362)
+++++|++++|.++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34444444444444 33344444444555555555544432 334444455555555555554444444445555555
Q ss_pred eccCCcCccCC-Chhhhhc----eeecccccccccCC---hhhhcCCCCCcEEEecC
Q 045704 300 SLEHNKFIGMI-PTQFALK----RLLWGGNYLFGPIS---GHLMGMKPGFANVSLVD 348 (362)
Q Consensus 300 ~L~~n~l~~~~-~~~~~~~----~L~l~~N~l~~~~~---~~~~~~~~~L~~L~L~~ 348 (362)
++++|++++.. +..+... +|++++|.+++..+ ..+..+ ++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-PQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-TTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-CCcccccCCC
Confidence 55555554421 1222211 45555555544444 356666 6888877653
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=9.1e-14 Score=116.11 Aligned_cols=126 Identities=27% Similarity=0.317 Sum_probs=93.4
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
+.+++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 36778888876 4565443 58999999999998 67788999999999999999999988888999999999999877
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEcc
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLS 229 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 229 (362)
.++ +..+. +..+++|++|++++|.++...+ ..|..+++|+.|+++
T Consensus 89 ~l~------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 89 RLR------------CIPPRTFDGLKSLRLLSLHGNDISVVPE----------------------GAFNDLSALSHLAIG 134 (193)
T ss_dssp CCC------------BCCTTTTTTCTTCCEEECCSSCCCBCCT----------------------TTTTTCTTCCEEECC
T ss_pred ccC------------EeCHHHhCCCCCCCEEECCCCCCCeeCh----------------------hhhhcCccccEEEeC
Confidence 654 33443 6677777777777777663222 234455666666666
Q ss_pred CCcCC
Q 045704 230 RNKLS 234 (362)
Q Consensus 230 ~n~l~ 234 (362)
+|.+.
T Consensus 135 ~N~~~ 139 (193)
T 2wfh_A 135 ANPLY 139 (193)
T ss_dssp SSCEE
T ss_pred CCCee
Confidence 66554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.2e-14 Score=119.62 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 171 LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 171 ~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
+.++.+|++|++++|.++. ++.... ++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3345666677777766663 333222 4788888888887743 5678889999999999999877666668889999
Q ss_pred EEEccCCCCCCCCCCC--CcCCCCCCCEEEccCCcCCCCChh---hhcCCCCCCeEeccCCcCcc
Q 045704 249 QLTLSYNNFTSLQVPA--NMGLTSKLVALELSYNELGGFLPA---YLASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~--~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~ 308 (362)
+|++++|.++.+ |. .+..+++|++|++++|.+...+.. .+..+++|+.|++++|....
T Consensus 92 ~L~L~~N~i~~~--~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVEL--GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCCG--GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCcc--hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999754 54 677888999999999998864333 47888999999999887653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=2.2e-13 Score=112.07 Aligned_cols=130 Identities=23% Similarity=0.254 Sum_probs=81.6
Q ss_pred EEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 71 TEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 71 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
+.+++++++++. +|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345556666653 34333 257888888888888666666778888888888888888776666777778888887766
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEcc
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLS 229 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls 229 (362)
.++ +..+. +..+++|++|++++|.+++ ..+..+..+++|++|+++
T Consensus 87 ~l~------------~~~~~~~~~l~~L~~L~l~~N~l~~----------------------~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 87 KLQ------------SLPNGVFDKLTQLKELALDTNQLKS----------------------VPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CCC------------CCCTTTTTTCTTCCEEECCSSCCSC----------------------CCTTTTTTCTTCCEEECC
T ss_pred Ccc------------ccCHHHhhCCcccCEEECcCCcceE----------------------eCHHHhcCCcccCEEEec
Confidence 553 22222 4455555555555555542 222334455666666666
Q ss_pred CCcCCCcc
Q 045704 230 RNKLSGTI 237 (362)
Q Consensus 230 ~n~l~~~~ 237 (362)
+|.+.+..
T Consensus 133 ~N~~~~~~ 140 (177)
T 2o6r_A 133 TNPWDCSC 140 (177)
T ss_dssp SSCBCCCH
T ss_pred CCCeeccC
Confidence 66665443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1.1e-13 Score=125.45 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=163.1
Q ss_pred CCeEEEEEecCCCCc--------------------ccccccccC--------CCCCCEEeCCCCcCCCCCchhhcCCCCC
Q 045704 67 SARVTEITLDPVGYP--------------------GSLISSKWN--------LLHLPTLDISDNSFSGSVPDSLSKLVRR 118 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L 118 (362)
.++++.|+|++|.+. .....+|.+ +++|++|++.+ .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 466788888877765 112235667 99999999999 8886667789999999
Q ss_pred CEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCC-----------------------
Q 045704 119 KRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSL----------------------- 174 (362)
Q Consensus 119 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l----------------------- 174 (362)
+.|++.+|.+..+.+.+|.++.++.++....+.... ........ +..+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~--------~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR--------FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH--------TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhh--------ccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 999999999999989999998888877766422100 00000000 2122
Q ss_pred ---CCCCEEeCcccccCCCCCCCc---ccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 175 ---KSLSFLDASDNNITGKIPPTF---PTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 175 ---~~L~~L~l~~n~~~~~~~~~l---~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
.+++.+.+.++-.. .....+ .++|+.+++++|++....+.+|.++.+|+++++.+| ++.....+|.++++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 23334444332110 000011 268999999999998777778999999999999998 8878889999999999
Q ss_pred -EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEec
Q 045704 249 -QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSL 301 (362)
Q Consensus 249 -~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 301 (362)
.+++.+ .++.+. +..+..+++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 277 ~~l~l~~-~l~~I~-~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-SVTAIE-FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-TCCEEC-TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-cceEEc-hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999988 676543 457888999999999999999988899999999999874
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=1.6e-12 Score=120.81 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=108.4
Q ss_pred cccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCC
Q 045704 85 ISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSI 164 (362)
Q Consensus 85 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~ 164 (362)
..+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++.+...+|.++++|+.+++.+|.+..
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~---------- 194 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK---------- 194 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE----------
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE----------
Confidence 3344443 5666666554 443344455553 566666654 4555555666666666666666554431
Q ss_pred CCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhh
Q 045704 165 SSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVL 241 (362)
Q Consensus 165 ~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l 241 (362)
.... |. ..+|+.+.+..+ +.......|. ++|+.+.+..+ +...-..+|.+ .+|+.+.+. +.++......|
T Consensus 195 --I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF 267 (401)
T 4fdw_A 195 --LPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAF 267 (401)
T ss_dssp --ECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTT
T ss_pred --echhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHh
Confidence 1111 22 344455544422 2222222332 34455544432 22222233333 445555552 22333444444
Q ss_pred cCCCCCcEEEccCCCCC-----CCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhh
Q 045704 242 FDHPSLQQLTLSYNNFT-----SLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFAL 316 (362)
Q Consensus 242 ~~~~~L~~L~L~~n~l~-----~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 316 (362)
.++++|+.+++.++.+. .+. +..+..+++|+.+++. +.++.....+|.++++|+.+.+..+ ++......|..
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 45555555555444332 111 1233444455555554 2244444444555555555555332 33332222221
Q ss_pred ---ceeecccccccccCChhhhcCCCCCcEEEecCCC
Q 045704 317 ---KRLLWGGNYLFGPISGHLMGMKPGFANVSLVDNC 350 (362)
Q Consensus 317 ---~~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 350 (362)
..+++.+|.+....+..|..+..+++.|++-.+.
T Consensus 345 ~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 345 TGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 1455555544443444444442355566655544
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=5e-13 Score=109.21 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=70.3
Q ss_pred CcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEcc
Q 045704 199 LVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELS 278 (362)
Q Consensus 199 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~ 278 (362)
.+.+++++|++. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|+++.++ +..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECC
Confidence 345555555555 344433 256666777777766666666666777777777777776532 3345666777777777
Q ss_pred CCcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 279 YNELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 279 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
+|++++.++..+..+++|+.|++++|++....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777777666667777777777777777776654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.5e-13 Score=113.09 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=25.7
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCC-CCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 89 WNLLHLPTLDISDNSFSGSVPDSLSKL-VRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
.++++|++|++++|.+. .++. +..+ ++|++|++++|.+++. ..|.++++|++|++++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC
Confidence 34445555555555554 2232 2222 2455555555554443 23444444444444433
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=5e-12 Score=117.56 Aligned_cols=241 Identities=13% Similarity=0.098 Sum_probs=155.0
Q ss_pred CCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC
Q 045704 91 LLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY 170 (362)
Q Consensus 91 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~ 170 (362)
+..++.+.+-++ ++..-..+|.++ +|+.+.+..+ ++.+...+|.+. +|+.+.+.+ .+ ..+.+.
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l------------~~I~~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL------------EQLKED 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC------------CEECSS
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc------------cEehHH
Confidence 456777777543 443445567664 6888887655 676666777773 677777763 22 112222
Q ss_pred -CCCCCCCCEEeCcccccCCCCCCCcc-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCc
Q 045704 171 -LGSLKSLSFLDASDNNITGKIPPTFP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQ 248 (362)
Q Consensus 171 -~~~l~~L~~L~l~~n~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~ 248 (362)
|.++++|+.+++..|.++......|. .+|+.+.+..+ +...-..+|.++++|+.+++..+ ++......|.+ .+|+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 67778888888887777654444444 77788877643 55455567777888888888764 55455566655 6788
Q ss_pred EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCC-----CCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----ee
Q 045704 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELG-----GFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RL 319 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L 319 (362)
.+.+. +.++.+. ...+..+++|+.+++.++.+. .....+|.++++|+.+++.+ .++......|... .+
T Consensus 252 ~i~lp-~~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 252 TVKLP-NGVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEEEE-TTCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred EEEeC-CCccEEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 88874 3444322 345667778888888777654 34566777888888888874 4666655565442 67
Q ss_pred ecccccccccCChhhhcCCCCCcEEEecCCCCCCCCCc
Q 045704 320 LWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCPEM 357 (362)
Q Consensus 320 ~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P~~ 357 (362)
.+.+| ++..-..+|..+ +|+.+++.+|.+..++..
T Consensus 329 ~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp EECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCS
T ss_pred EECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccc
Confidence 77544 554455566665 788888888877665543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=9.6e-13 Score=107.96 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=68.2
Q ss_pred cEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccC
Q 045704 200 VELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSY 279 (362)
Q Consensus 200 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~ 279 (362)
+.+++++|++. .+|..+. ++|++|++++|.+++..+..+..+++|++|+|++|+++.++ +..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCC
Confidence 45555555554 4444432 56666666666666666666666667777777777766531 22345666777777777
Q ss_pred CcCCCCChhhhcCCCCCCeEeccCCcCccCCC
Q 045704 280 NELGGFLPAYLASMPNLSALSLEHNKFIGMIP 311 (362)
Q Consensus 280 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 311 (362)
|++++.++..+..+++|++|++++|++....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77776555556777777777777777765543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.3e-12 Score=106.66 Aligned_cols=108 Identities=23% Similarity=0.257 Sum_probs=92.9
Q ss_pred CCEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC
Q 045704 177 LSFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256 (362)
Q Consensus 177 L~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 256 (362)
.+.+++++|.++ .+|..+.+++++|++++|++.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcC-ccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 467888888877 4777777889999999999998878889999999999999999998888888899999999999999
Q ss_pred CCCCCCCCCcCCCCCCCEEEccCCcCCCCC
Q 045704 257 FTSLQVPANMGLTSKLVALELSYNELGGFL 286 (362)
Q Consensus 257 l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~ 286 (362)
++.+. +..+..+++|++|++++|.+....
T Consensus 90 l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 90 LKSIP-RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCEeC-HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99742 445788899999999999998753
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.5e-15 Score=127.63 Aligned_cols=84 Identities=23% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh----------hhh
Q 045704 221 EFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP----------AYL 290 (362)
Q Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~----------~~~ 290 (362)
++|++|++++|.+++. + .+..+++|+.|++++|.++.++....+..+++|++|++++|.+.+..| ..+
T Consensus 93 ~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 3444444444444331 1 233344444444444444432111133444455555555555544322 235
Q ss_pred cCCCCCCeEeccCCcCcc
Q 045704 291 ASMPNLSALSLEHNKFIG 308 (362)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~ 308 (362)
..+++|+.|+ +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 6677777765 555543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.1e-15 Score=128.41 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=36.0
Q ss_pred cCCCCCCEEeCCCCcCCCCCch------hhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcc
Q 045704 89 WNLLHLPTLDISDNSFSGSVPD------SLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF 152 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 152 (362)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+++. | .+.++++|++|++++|.+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEE
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCc
Confidence 3344555555555555554443 566666666666666666653 3 555566666666665544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.7e-12 Score=105.29 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=91.6
Q ss_pred CEEeCcccccCCCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCC
Q 045704 178 SFLDASDNNITGKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNF 257 (362)
Q Consensus 178 ~~L~l~~n~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l 257 (362)
+.+++++|.++ .+|..+.+++++|++++|++.+..|..|.++++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 67788888876 67777778899999999999988788899999999999999999988777788999999999999999
Q ss_pred CCCCCCCCcCCCCCCCEEEccCCcCCCCC
Q 045704 258 TSLQVPANMGLTSKLVALELSYNELGGFL 286 (362)
Q Consensus 258 ~~~~l~~~~~~~~~L~~L~L~~n~l~~~~ 286 (362)
+.++ +..+..+++|++|++++|.+....
T Consensus 94 ~~l~-~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 94 KSIP-RGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCC-TTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ceeC-HHHhccccCCCEEEeCCCCccccc
Confidence 9642 345888999999999999998743
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=7.7e-14 Score=128.53 Aligned_cols=86 Identities=26% Similarity=0.308 Sum_probs=51.7
Q ss_pred CCCCCEEeCcccccCCCCCCCc----c--cCCcEEEeeCCccCCC----CcccccCCCCCCEEEccCCcCCCcc----hh
Q 045704 174 LKSLSFLDASDNNITGKIPPTF----P--TSLVELSVRNNNLVGN----VPENFGDMEFLQVLDLSRNKLSGTI----FS 239 (362)
Q Consensus 174 l~~L~~L~l~~n~~~~~~~~~l----~--~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~----~~ 239 (362)
.++|++|++++|.+++.....+ . ++|++|++++|.+... ++..+...++|++|++++|.++... ..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3455566666555543211111 1 4566666666666532 2445566678888888888887532 33
Q ss_pred hhcCCCCCcEEEccCCCCCC
Q 045704 240 VLFDHPSLQQLTLSYNNFTS 259 (362)
Q Consensus 240 ~l~~~~~L~~L~L~~n~l~~ 259 (362)
.+...++|++|+|++|.+++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 34456788888888888764
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.19 E-value=1.3e-09 Score=101.09 Aligned_cols=273 Identities=14% Similarity=0.022 Sum_probs=163.2
Q ss_pred CCCCCCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCC----------------
Q 045704 63 IVSGSARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGN---------------- 126 (362)
Q Consensus 63 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------- 126 (362)
.|.+..+++++.+.. .++..-..+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 455667888888864 355444567888888888888654 44334456777777776655432
Q ss_pred -----cCCccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCccc---------------
Q 045704 127 -----SFKCLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDN--------------- 185 (362)
Q Consensus 127 -----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n--------------- 185 (362)
........+|.++++|+.+.+.++... .... |.++.+|+.+.+..+
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-------------I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSMET-------------LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILL 210 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTCCE-------------ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTC
T ss_pred cccCccccccchhhhcccCCCcEEecCCccce-------------eccccccCCCCceEEEcCCCceEeCchhhcccccc
Confidence 111122345666677777776543211 1111 344444444444332
Q ss_pred --------ccCCCCCCCcc-cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC
Q 045704 186 --------NITGKIPPTFP-TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN 256 (362)
Q Consensus 186 --------~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~ 256 (362)
... .....+. ..++.+.+... +......++..+..++.+.+..+.. ......+..+..++.+......
T Consensus 211 ~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 211 ENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE
T ss_pred ceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee
Confidence 111 0111111 45555555432 2212334566677777777766533 2455566677777777766554
Q ss_pred CCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCCh
Q 045704 257 FTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISG 332 (362)
Q Consensus 257 l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~ 332 (362)
+.. ..+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|... .+++..+ ++.....
T Consensus 288 i~~----~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 288 VPE----KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ECT----TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ecc----ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 332 24566788899888755 66666778888999999999754 665656666542 7788766 6666667
Q ss_pred hhhcCCCCCcEEEecCCCCCCCCCcccCCC
Q 045704 333 HLMGMKPGFANVSLVDNCLYMCPEMFFFCQ 362 (362)
Q Consensus 333 ~~~~~~~~L~~L~L~~N~l~~~P~~~~~~~ 362 (362)
+|..+ ++|+.+++.++ ++.+...|.+|.
T Consensus 361 aF~~C-~~L~~i~lp~~-~~~~~~~F~~c~ 388 (394)
T 4fs7_A 361 AFQGC-INLKKVELPKR-LEQYRYDFEDTT 388 (394)
T ss_dssp TBTTC-TTCCEEEEEGG-GGGGGGGBCTTC
T ss_pred HhhCC-CCCCEEEECCC-CEEhhheecCCC
Confidence 88888 69999999754 555556676663
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=9.1e-11 Score=106.98 Aligned_cols=102 Identities=25% Similarity=0.255 Sum_probs=71.5
Q ss_pred EEeCccc-ccCCCCCCCcc--cCCcEEEeeC-CccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccC
Q 045704 179 FLDASDN-NITGKIPPTFP--TSLVELSVRN-NNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSY 254 (362)
Q Consensus 179 ~L~l~~n-~~~~~~~~~l~--~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~ 254 (362)
.++++++ .++ .+|. +. ++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 666 4666 55 5678888875 777766667777778888888888888777777777778888888888
Q ss_pred CCCCCCCCCCCcCCCCCCCEEEccCCcCCC
Q 045704 255 NNFTSLQVPANMGLTSKLVALELSYNELGG 284 (362)
Q Consensus 255 n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~ 284 (362)
|+++.++ +..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~-~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLS-WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCC-STTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeC-HHHcccCC-ceEEEeeCCCccC
Confidence 8777542 22333333 7777777777765
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1e-12 Score=120.97 Aligned_cols=164 Identities=21% Similarity=0.105 Sum_probs=109.4
Q ss_pred CCCCCEEeCcccccCCCCCCCcc-------cCCcEEEeeCCccCCCCcccc-cCCCCCCEEEccCCcCCCcchhhh----
Q 045704 174 LKSLSFLDASDNNITGKIPPTFP-------TSLVELSVRNNNLVGNVPENF-GDMEFLQVLDLSRNKLSGTIFSVL---- 241 (362)
Q Consensus 174 l~~L~~L~l~~n~~~~~~~~~l~-------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~l---- 241 (362)
++.|++|++++|.++......+. .+|++|++++|.+.......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35788999999887653333222 478888998888764322222 235678889999888876544443
Q ss_pred -cCCCCCcEEEccCCCCCCCC---CCCCcCCCCCCCEEEccCCcCCCC----ChhhhcCCCCCCeEeccCCcCccCCChh
Q 045704 242 -FDHPSLQQLTLSYNNFTSLQ---VPANMGLTSKLVALELSYNELGGF----LPAYLASMPNLSALSLEHNKFIGMIPTQ 313 (362)
Q Consensus 242 -~~~~~L~~L~L~~n~l~~~~---l~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 313 (362)
...++|++|+|++|.++... ++..+...++|++|+|++|.+.+. +...+...++|+.|+|++|.++......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 34678888999888886421 222335667888888888888753 2455667778888888888887644333
Q ss_pred hhh--------ceeecccccccccCChhhhcC
Q 045704 314 FAL--------KRLLWGGNYLFGPISGHLMGM 337 (362)
Q Consensus 314 ~~~--------~~L~l~~N~l~~~~~~~~~~~ 337 (362)
+.. .+|++++|.+++.....+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 321 278888888876655555543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=2.2e-10 Score=104.48 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=83.2
Q ss_pred EEecCC-CCcccccccccCCCCCCEEeCCC-CcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCC
Q 045704 73 ITLDPV-GYPGSLISSKWNLLHLPTLDISD-NSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNN 150 (362)
Q Consensus 73 L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 150 (362)
++.+++ +++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 355555 6764 677 88999999999996 9999777788999999999999999999999999999999999999977
Q ss_pred cccCCeeEeecCCCCCCCCC-CCCCCCCCEEeCcccccC
Q 045704 151 DFQGPRLEIRQNSISSEFPY-LGSLKSLSFLDASDNNIT 188 (362)
Q Consensus 151 ~l~~~~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~ 188 (362)
.++ +.++. +..++ |+.|++.+|.+.
T Consensus 91 ~l~------------~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALE------------SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCS------------CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccc------------eeCHHHcccCC-ceEEEeeCCCcc
Confidence 765 33444 44444 999999999876
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.88 E-value=1.7e-07 Score=86.84 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=49.0
Q ss_pred eEEEEEecCCCCcccccccccCCCCCCEEeCCCCc---CCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEE
Q 045704 69 RVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS---FSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEEL 145 (362)
Q Consensus 69 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 145 (362)
.++.+.+.. .++..-..+|.++++|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 366666654 2443445567777888888776542 44334456777777777766543 555555667777777777
Q ss_pred EccC
Q 045704 146 YLDN 149 (362)
Q Consensus 146 ~L~~ 149 (362)
.+..
T Consensus 143 ~lp~ 146 (394)
T 4gt6_A 143 TIPE 146 (394)
T ss_dssp ECCT
T ss_pred cccc
Confidence 7753
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=6.4e-08 Score=89.67 Aligned_cols=263 Identities=11% Similarity=0.063 Sum_probs=156.6
Q ss_pred cccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccCCcc-------cCC--
Q 045704 85 ISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDNNDF-------QGP-- 155 (362)
Q Consensus 85 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-------~~~-- 155 (362)
..+|.++.+|+++.+..+ ++..-..+|.++.+|+.+++.++ ++.+...+|.++.+|+.+.+..+-. ...
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 457888999999999754 66555678999999999999755 7777778899999998877754311 000
Q ss_pred -eeEeecCCCCCCCCC-CCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCC
Q 045704 156 -RLEIRQNSISSEFPY-LGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRN 231 (362)
Q Consensus 156 -~l~l~~n~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n 231 (362)
.... .......... |.++.+|+.+.+..+... .....|. .+|+.+.+..+ +......+|.++..|+.+.+..+
T Consensus 142 ~~~~~-~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITI-PEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEEC-CTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccc-CccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 1111 1111111122 778889999988765322 2333343 67777777654 33233345555556655555443
Q ss_pred cC---------------------CCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhh
Q 045704 232 KL---------------------SGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYL 290 (362)
Q Consensus 232 ~l---------------------~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 290 (362)
.. +......+..+..++.+.+..+...- . ...+..+..++.+......+. ...+
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i-~-~~~F~~~~~l~~~~~~~~~i~---~~~F 293 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRI-G-GSLFYNCSGLKKVIYGSVIVP---EKTF 293 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEE-C-SCTTTTCTTCCEEEECSSEEC---TTTT
T ss_pred ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCccee-e-ccccccccccceeccCceeec---cccc
Confidence 21 11222333344455555544432211 1 223344555555555544332 3456
Q ss_pred cCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCCCCCCCC-CcccCC
Q 045704 291 ASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDNCLYMCP-EMFFFC 361 (362)
Q Consensus 291 ~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N~l~~~P-~~~~~~ 361 (362)
..+.+|+.+.+..+ ++......|... .+++.++ ++..-..+|.++ .+|+.+++..| ++.++ .+|.+|
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC-TSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC-CCCCEEEECcc-ccEehHHHhhCC
Confidence 77888888888765 555555555432 7777644 655566788888 69999999776 76664 355555
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.2e-09 Score=99.77 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=31.3
Q ss_pred CCCCCEEEccCCcCCCCC----hhhhcCCCCCCeEeccCCcCccCCChhhhh---ceeeccccc
Q 045704 269 TSKLVALELSYNELGGFL----PAYLASMPNLSALSLEHNKFIGMIPTQFAL---KRLLWGGNY 325 (362)
Q Consensus 269 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~~L~l~~N~ 325 (362)
+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...-..+.. ..+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 456666666666655422 222234566777777777666544444443 256666665
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=2.6e-09 Score=97.63 Aligned_cols=208 Identities=15% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCeEEEEEecCCCCcc-c-------ccccccCCCCCCEEeCCCCcCC---------CCCchhhcCCCCCCEEeCcCCcCC
Q 045704 67 SARVTEITLDPVGYPG-S-------LISSKWNLLHLPTLDISDNSFS---------GSVPDSLSKLVRRKRLGLSGNSFK 129 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~~~ 129 (362)
..+|+.|.+....+.+ . +..+...+++|+.|.+.+.... +.+...+..+++|+.|.|+++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4678888888766653 2 2334566788999988665331 123344556677777777665211
Q ss_pred ccchhhhcCCCCCcEEEccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCccc--ccCCCCCCCcccCCcEEEeeCC
Q 045704 130 CLIHASVGSLSQLEELYLDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDN--NITGKIPPTFPTSLVELSVRNN 207 (362)
Q Consensus 130 ~~~~~~~~~l~~L~~L~L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~~L~~L~l~~n 207 (362)
.. +. +. +++|++|++..+.+....+.. . ....+++|+.|+|+.+ ...+..
T Consensus 186 ~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~-------l--~~~~lp~L~~L~L~~~~~~~~~~~---------------- 237 (362)
T 2ra8_A 186 SI-GK-KP-RPNLKSLEIISGGLPDSVVED-------I--LGSDLPNLEKLVLYVGVEDYGFDG---------------- 237 (362)
T ss_dssp BC-CS-CB-CTTCSEEEEECSBCCHHHHHH-------H--HHSBCTTCCEEEEECBCGGGTCCS----------------
T ss_pred ee-cc-cc-CCCCcEEEEecCCCChHHHHH-------H--HHccCCCCcEEEEeccccccccch----------------
Confidence 11 11 22 566666666655443110000 0 0113556666665421 111000
Q ss_pred ccCCCCcccc--cCCCCCCEEEccCCcCCCcchhhhc---CCCCCcEEEccCCCCCCCC---CCCCcCCCCCCCEEEccC
Q 045704 208 NLVGNVPENF--GDMEFLQVLDLSRNKLSGTIFSVLF---DHPSLQQLTLSYNNFTSLQ---VPANMGLTSKLVALELSY 279 (362)
Q Consensus 208 ~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~~~l~---~~~~L~~L~L~~n~l~~~~---l~~~~~~~~~L~~L~L~~ 279 (362)
.+. .+...+ ..+++|+.|++.+|.+....+..+. .+++|+.|+|+.|.+++.. ++..+..+++|+.|++++
T Consensus 238 ~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 238 DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 000 011112 2467788888877777643333332 4677888888888776521 122334457788888888
Q ss_pred CcCCCCChhhhcC-CCCCCeEeccCCc
Q 045704 280 NELGGFLPAYLAS-MPNLSALSLEHNK 305 (362)
Q Consensus 280 n~l~~~~~~~~~~-l~~L~~L~L~~n~ 305 (362)
|.++......+.. + ...+++++++
T Consensus 317 n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8877544444443 2 3567887776
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.65 E-value=2.1e-06 Score=79.41 Aligned_cols=276 Identities=10% Similarity=0.120 Sum_probs=142.0
Q ss_pred CCCCCCeEEEEEecCCC---CcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCC
Q 045704 63 IVSGSARVTEITLDPVG---YPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSL 139 (362)
Q Consensus 63 ~~~~~~~l~~L~l~~~~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 139 (362)
.|.+..+++.+.+..+. ++..-..+|.++..|+.+.+..+ +......+|.++.+|+.+.+..+ +..+...+|.++
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 35567788888886542 44333457777888888777554 33344557788888888888643 555556677888
Q ss_pred CCCcEEEccCCccc--C--------CeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc-------------
Q 045704 140 SQLEELYLDNNDFQ--G--------PRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP------------- 196 (362)
Q Consensus 140 ~~L~~L~L~~n~l~--~--------~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~------------- 196 (362)
..|+.+.+..+--. . ..+.+..+...-....+..+..++........... ....+.
T Consensus 160 ~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 160 YSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEEC
T ss_pred cccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccc-ccceeeccccccccccccc
Confidence 88888887643210 0 01111111000000114444455544443332221 111100
Q ss_pred ---cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCC
Q 045704 197 ---TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLV 273 (362)
Q Consensus 197 ---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~ 273 (362)
..+..+.+. +.+...-..+|.++..|+.+.+.++.. ......|.++++|+.+.+.. .++.+. ...+..+.+|+
T Consensus 239 ~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~-~~aF~~c~~L~ 314 (394)
T 4gt6_A 239 PSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELP-ESVFAGCISLK 314 (394)
T ss_dssp CTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEEC-TTTTTTCTTCC
T ss_pred ccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccC-ceeecCCCCcC
Confidence 111112211 111112234566777777777765433 35556667777777777753 333321 23456667777
Q ss_pred EEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEEecCC
Q 045704 274 ALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVSLVDN 349 (362)
Q Consensus 274 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~L~~N 349 (362)
.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+|... .+++.++.... ..+... .+|+.+.+..|
T Consensus 315 ~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~-~~L~~i~i~~~ 388 (394)
T 4gt6_A 315 SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTD-SGLQNLPVAPG 388 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCC-CCC--------
T ss_pred EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhcc-CCCCEEEeCCC
Confidence 7777654 55555567777777887777544 555555555432 66666654321 234445 46777776655
Q ss_pred CC
Q 045704 350 CL 351 (362)
Q Consensus 350 ~l 351 (362)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.53 E-value=3.2e-06 Score=77.66 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=69.6
Q ss_pred cCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEE
Q 045704 197 TSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALE 276 (362)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~ 276 (362)
..++.+.+..+ +......++.++..|+.+.+..+ ++......+.++.+|+.+.+..+ +..+. ...+..+++|+.+.
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~-~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP-YLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC-TTTTTTCTTCCEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc-cccccccccccccc
Confidence 55666666443 23233455667777777777654 55455566667777777777543 33221 22455667777777
Q ss_pred ccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhh
Q 045704 277 LSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFA 315 (362)
Q Consensus 277 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 315 (362)
+.++.++.....+|.++.+|+.+.|..+ ++.....+|.
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence 7777776666677777777777777643 4444444443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=7.4e-09 Score=85.49 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=46.6
Q ss_pred ccccccCCCCCCEEeCCCC-cCCCC----CchhhcCCCCCCEEeCcCCcCCccc----hhhhcCCCCCcEEEccCCccc
Q 045704 84 LISSKWNLLHLPTLDISDN-SFSGS----VPDSLSKLVRRKRLGLSGNSFKCLI----HASVGSLSQLEELYLDNNDFQ 153 (362)
Q Consensus 84 ~~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~ 153 (362)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...+.|++|+|++|.++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 4445566778888888888 77632 3455666778888888888876432 334455567777777777654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.4e-08 Score=83.81 Aligned_cols=46 Identities=2% Similarity=-0.018 Sum_probs=29.3
Q ss_pred CchhhcCCCCCCEEeCcCC-cCCcc----chhhhcCCCCCcEEEccCCccc
Q 045704 108 VPDSLSKLVRRKRLGLSGN-SFKCL----IHASVGSLSQLEELYLDNNDFQ 153 (362)
Q Consensus 108 ~~~~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 153 (362)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 4455667778888888887 77643 2334555566667766666554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.33 E-value=1.8e-05 Score=72.58 Aligned_cols=262 Identities=10% Similarity=0.074 Sum_probs=154.5
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEE
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELY 146 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 146 (362)
..+++++.+.. +++..-..+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.+...+|.+. +|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 35677777764 455444557888888888888654 554445667776 6777777543 555555666653 788888
Q ss_pred ccCCcccCCeeEeecCCCCCCCCCCCCCCCCCEEeCcccccCCCCCCCcc--cCCcEEEeeCCccC--------------
Q 045704 147 LDNNDFQGPRLEIRQNSISSEFPYLGSLKSLSFLDASDNNITGKIPPTFP--TSLVELSVRNNNLV-------------- 210 (362)
Q Consensus 147 L~~n~l~~~~l~l~~n~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~L~~L~l~~n~l~-------------- 210 (362)
+..+-.. +.... +.. .+|+.+.+..+- +......+. ..++.+.+..+...
T Consensus 120 lp~~~~~-----i~~~~-------F~~-~~l~~~~~~~~v-~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (379)
T 4h09_A 120 FPGATTE-----IGNYI-------FYN-SSVKRIVIPKSV-TTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT 185 (379)
T ss_dssp CCTTCCE-----ECTTT-------TTT-CCCCEEEECTTC-CEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS
T ss_pred CCCcccc-----ccccc-------ccc-ceeeeeecccee-eccccchhcccccccccccccccceeecccceecccccc
Confidence 7643211 11111 222 245555444321 111112221 34444433322110
Q ss_pred ---------------------CCCcccccCCCCCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCC
Q 045704 211 ---------------------GNVPENFGDMEFLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLT 269 (362)
Q Consensus 211 ---------------------~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~ 269 (362)
......+....+++.+.+..+ +.......+..+..|+.+.+..+ ++.+. ...+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~-~~aF~~~ 262 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG-SFLLQNC 262 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC-TTTTTTC
T ss_pred eeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC-cccccee
Confidence 011223344556666666543 34345566677788888888664 33321 2345667
Q ss_pred CCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccCCChhhhhc----eeecccccccccCChhhhcCCCCCcEEE
Q 045704 270 SKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGMIPTQFALK----RLLWGGNYLFGPISGHLMGMKPGFANVS 345 (362)
Q Consensus 270 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~L~l~~N~l~~~~~~~~~~~~~~L~~L~ 345 (362)
.+|+.+.+..+ +......+|.++++|+.+.+.++.++......|... .+.+.++ ++..-..+|.++ .+|+.+.
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C-~~L~~i~ 339 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC-KALSTIS 339 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC-TTCCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC-CCCCEEE
Confidence 78888888654 555566788899999999999888887777666542 7787654 555556778888 5888888
Q ss_pred ecCCCCCCC
Q 045704 346 LVDNCLYMC 354 (362)
Q Consensus 346 L~~N~l~~~ 354 (362)
+..+ ++.+
T Consensus 340 ip~~-v~~I 347 (379)
T 4h09_A 340 YPKS-ITLI 347 (379)
T ss_dssp CCTT-CCEE
T ss_pred ECCc-cCEE
Confidence 8554 5544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=1e-06 Score=76.48 Aligned_cols=82 Identities=29% Similarity=0.283 Sum_probs=51.9
Q ss_pred cCCCCCCEEEccCCcCCC--cchhhhcCCCCCcEEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCCh-------h
Q 045704 218 GDMEFLQVLDLSRNKLSG--TIFSVLFDHPSLQQLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLP-------A 288 (362)
Q Consensus 218 ~~l~~L~~L~ls~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~-------~ 288 (362)
.++++|++|++++|.+++ .++..+..+++|+.|+|++|+++++.-...+..+ +|++|++++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 356777777777777776 3345556677777777777777764211222233 67777777777765433 3
Q ss_pred hhcCCCCCCeEe
Q 045704 289 YLASMPNLSALS 300 (362)
Q Consensus 289 ~~~~l~~L~~L~ 300 (362)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 456677777665
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=9e-07 Score=71.55 Aligned_cols=85 Identities=9% Similarity=0.047 Sum_probs=64.1
Q ss_pred CCeEEEEEecCCCCcccccccccCCCCCCEEeCCCCc-CCCCCchhhcCC----CCCCEEeCcCCc-CCccchhhhcCCC
Q 045704 67 SARVTEITLDPVGYPGSLISSKWNLLHLPTLDISDNS-FSGSVPDSLSKL----VRRKRLGLSGNS-FKCLIHASVGSLS 140 (362)
Q Consensus 67 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~ 140 (362)
.-+++.|+++++.++..-...+.++++|++|+|++|. |++..-..+..+ ++|++|+|++|. ++...-..+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3578899999988877666677888889999998885 665555556664 468888888875 7665556677788
Q ss_pred CCcEEEccCCc
Q 045704 141 QLEELYLDNND 151 (362)
Q Consensus 141 ~L~~L~L~~n~ 151 (362)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=2.9e-06 Score=73.70 Aligned_cols=88 Identities=27% Similarity=0.326 Sum_probs=61.4
Q ss_pred cCCCCCCEEeCCCCcCCC--CCchhhcCCCCCCEEeCcCCcCCccchhhhcCCC--CCcEEEccCCcccCCeeEeecCCC
Q 045704 89 WNLLHLPTLDISDNSFSG--SVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLS--QLEELYLDNNDFQGPRLEIRQNSI 164 (362)
Q Consensus 89 ~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~l~l~~n~~ 164 (362)
.++++|++|+|++|.|.+ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+..-+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~----- 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQ----- 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSH-----
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcc-----
Confidence 568899999999999986 3456777899999999999999876 2334444 8999999988875310000
Q ss_pred CCCCCC-CCCCCCCCEEeCc
Q 045704 165 SSEFPY-LGSLKSLSFLDAS 183 (362)
Q Consensus 165 ~~~~~~-~~~l~~L~~L~l~ 183 (362)
...... +..+++|+.||-.
T Consensus 240 ~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHHCTTCCEESSC
T ss_pred hhHHHHHHHHCcccCeECCc
Confidence 000001 5567888888743
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.3e-06 Score=70.63 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=40.9
Q ss_pred CCCEEEccCCcCCCcchhhhcCCCCCcEEEccCCC-CCCCCCCCCcCCC----CCCCEEEccCCc-CCCCChhhhcCCCC
Q 045704 222 FLQVLDLSRNKLSGTIFSVLFDHPSLQQLTLSYNN-FTSLQVPANMGLT----SKLVALELSYNE-LGGFLPAYLASMPN 295 (362)
Q Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~l~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 295 (362)
.|++||++++.++...-..+.++++|+.|+|++|. +++..+ ..+... ++|++|++++|. +++.--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555555554444444555555555555553 333111 111221 245666666653 55443344555666
Q ss_pred CCeEeccCCc
Q 045704 296 LSALSLEHNK 305 (362)
Q Consensus 296 L~~L~L~~n~ 305 (362)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=6.3e-05 Score=61.85 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=56.1
Q ss_pred cCCcEEEeeCC-ccCC----CCcccccCCCCCCEEEccCCcCCCc----chhhhcCCCCCcEEEccCCCCCCCC---CCC
Q 045704 197 TSLVELSVRNN-NLVG----NVPENFGDMEFLQVLDLSRNKLSGT----IFSVLFDHPSLQQLTLSYNNFTSLQ---VPA 264 (362)
Q Consensus 197 ~~L~~L~l~~n-~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~---l~~ 264 (362)
+.|+.|+++++ ++.. .+..++..-+.|+.|++++|.+... +...+...+.|++|+|++|.|+... +-.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34555555543 4431 1334444555666666666666532 2333444566666666666665321 111
Q ss_pred CcCCCCCCCEEEccCC---cCCC----CChhhhcCCCCCCeEeccCCcC
Q 045704 265 NMGLTSKLVALELSYN---ELGG----FLPAYLASMPNLSALSLEHNKF 306 (362)
Q Consensus 265 ~~~~~~~L~~L~L~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l 306 (362)
.+...+.|+.|+|+++ .+.. .+...+...++|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334455667777644 2222 1234455556777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=5e-05 Score=62.49 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=41.3
Q ss_pred cccCCCCCCEEeCCCC-cCCCC----CchhhcCCCCCCEEeCcCCcCCccc----hhhhcCCCCCcEEEccCCccc
Q 045704 87 SKWNLLHLPTLDISDN-SFSGS----VPDSLSKLVRRKRLGLSGNSFKCLI----HASVGSLSQLEELYLDNNDFQ 153 (362)
Q Consensus 87 ~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~ 153 (362)
.+.+-+.|++|+|+++ .|... +.+.+...+.|++|+|++|.+.... .+++...+.|++|+|+.|.|+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445567777777764 66532 4455666677777777777775332 333445566777777766654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0023 Score=48.87 Aligned_cols=56 Identities=25% Similarity=0.435 Sum_probs=38.1
Q ss_pred EEeCcccccC-CCCCCCcccCCcEEEeeCCccCCCCcccccCCCCCCEEEccCCcCC
Q 045704 179 FLDASDNNIT-GKIPPTFPTSLVELSVRNNNLVGNVPENFGDMEFLQVLDLSRNKLS 234 (362)
Q Consensus 179 ~L~l~~n~~~-~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 234 (362)
.++.+++.++ ..+|..++.++++|+|++|+++...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 3566666677777777777777555556677777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0035 Score=47.85 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=39.9
Q ss_pred EEEccCCCCCCCCCCCCcCCCCCCCEEEccCCcCCCCChhhhcCCCCCCeEeccCCcCccC
Q 045704 249 QLTLSYNNFTSLQVPANMGLTSKLVALELSYNELGGFLPAYLASMPNLSALSLEHNKFIGM 309 (362)
Q Consensus 249 ~L~L~~n~l~~~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 309 (362)
.++.+++.++...+|.. ..+++++|+|++|+|+...+..|..+++|+.|+|++|++...
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 56667777661122432 234677888888888877777777788888888888877643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.44 E-value=5.4 Score=28.27 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=26.2
Q ss_pred CCCCCchhhcCCCCCCEEeCcCCcCCccchhhhcCCCCCcEEEccC
Q 045704 104 FSGSVPDSLSKLVRRKRLGLSGNSFKCLIHASVGSLSQLEELYLDN 149 (362)
Q Consensus 104 i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 149 (362)
++.+-..+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334455666666666666543 4555555666666666666653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.98 E-value=26 Score=24.60 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=32.0
Q ss_pred CcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCCCCEEeCcCC
Q 045704 80 YPGSLISSKWNLLHLPTLDISDNSFSGSVPDSLSKLVRRKRLGLSGN 126 (362)
Q Consensus 80 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 126 (362)
++..-..+|.++..|+++.+-.+ ++..-..+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33333457778888888888665 33355567888888888888654
Done!