BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045705
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 75/135 (55%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LYL N +G I + + L +L L N LSG+IP SLG+L+ L L L N L G I
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
E+ +K+L L L N L+G IP L N TNL + LS+N+L+G IP G L NL
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 294 LYVYKNSIFGSILDE 308
L + NS G+I E
Sbjct: 516 LKLSNNSFSGNIPAE 530
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+L N +SG+I + SL L +L+L N L G IP L + L TL LD N L+G I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
+ + N +L ++ L++N L+G IP +G L NL +L+LS+N SG IP G+ +L
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 294 LYVYKNSIFGSI 305
L + N G+I
Sbjct: 540 LDLNTNLFNGTI 551
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDI--NAISGSILDEI--RSLKSLFNLRLGDN 203
VLD +S + E+ LL LD+ N SG IL + +L L L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN 263
+G IP +L N + L +L+L N LSG+I + +G+L L L+L N L G IP L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXX 323
+ L L L N L+G IP N TNL + + N + G
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------------------- 502
Query: 324 XXXXXIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
IP + L N L ++ LS+N G IP EL SL+
Sbjct: 503 -----IPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLI 538
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L L +N + G I E+ +K+L L L N L+G IP L N TNL + L +N L+G I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS 284
IG L++L L+L++N+ SG+IP LG+ +L+ L+L+ N +G IP +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
S+ L + N LSG IP +G++ L L L N +SGSI +E+G+L+ L L+L+SN L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIP 282
G IP + LT L ++LS+N LSG IP
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 218 NLATLYLDS--NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
N + ++LD N LSG I EIG++ L+ L L N +SGSIP +G+L L +L+LS N
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
KL G IP + LT LT + + N++ G I
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 168 TWPTW-----LLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA 220
T PT+ +++LD+ N +SG I EI S+ LF L LG N +SGSIP +G+L L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 221 TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP 258
L L SN L G I + L L ++L++N LSG IP
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 8/192 (4%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L + N ISG + ++ +L L + N S IP LG+ + L L + N LSG
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 236
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSF-GNLTNL 291
I L L ++SN G IP LPL +L L L++NK +G IP G L
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 292 TTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXIPLSLTNLTNSLEVVCLSSNHIV 351
T L + N +G++ +P+ L+V+ LS N
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 352 GEIPLELRKHSS 363
GE+P L S+
Sbjct: 354 GELPESLTNLSA 365
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 50/266 (18%)
Query: 138 IQQSVMFSMLFH--VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSL 195
I Q +M+ +LDF ++ T W+ L N ++G I I L++L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENL 513
Query: 196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI------------LNEIGNLKSL 243
L+L +N+ SG+IP LG+ +L L L++N +G+I N I + +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 244 YY----------------------------------LELTSNTLSGSIPLPLGNLTNLVV 269
Y +TS G N +++
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXI 329
L++S N LSG IP G++ L L + N I GSI DE I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 330 PLSLTNLTNSLEVVCLSSNHIVGEIP 355
P +++ LT L + LS+N++ G IP
Sbjct: 694 PQAMSALT-MLTEIDLSNNNLSGPIP 718
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 145 SMLFHVLDFPHTAYSDSMEEAHVTWP-TWLLYLDINAISGSILDEIRSLKSLFNLRLGDN 203
SM+F LD + S + + + P ++L L N ISGSI DE+ L+ L L L N
Sbjct: 630 SMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP 260
L G IP ++ LT L + L +N LSG I E+G ++ + +N PLP
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGLCGYPLP 743
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 173 LLYLDINAISGS------ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226
+L L N+ISG+ + D LK +L + N +SG + +S NL L + S
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS--RCVNLEFLDVSS 206
Query: 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFG 286
N S I +G+ +L +L+++ N LSG + T L +L +S N+ G IPP
Sbjct: 207 NNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 263
Query: 287 NLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXIPLSLTNLTNSLEVVCLS 346
L +L L + +N G IP L+ ++L + LS
Sbjct: 264 PLKSLQYLSLAENKFTGE------------------------IPDFLSGACDTLTGLDLS 299
Query: 347 SNHIVGEIP 355
NH G +P
Sbjct: 300 GNHFYGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 75/135 (55%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LYL N +G I + + L +L L N LSG+IP SLG+L+ L L L N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
E+ +K+L L L N L+G IP L N TNL + LS+N+L+G IP G L NL
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 294 LYVYKNSIFGSILDE 308
L + NS G+I E
Sbjct: 519 LKLSNNSFSGNIPAE 533
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+L N +SG+I + SL L +L+L N L G IP L + L TL LD N L+G I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
+ + N +L ++ L++N L+G IP +G L NL +L+LS+N SG IP G+ +L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 294 LYVYKNSIFGSI 305
L + N G+I
Sbjct: 543 LDLNTNLFNGTI 554
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDI--NAISGSILDEI--RSLKSLFNLRLGDN 203
VLD +S + E+ LL LD+ N SG IL + +L L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN 263
+G IP +L N + L +L+L N LSG+I + +G+L L L+L N L G IP L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXX 323
+ L L L N L+G IP N TNL + + N + G
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------------------- 505
Query: 324 XXXXXIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
IP + L N L ++ LS+N G IP EL SL+
Sbjct: 506 -----IPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLI 541
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L L +N + G I E+ +K+L L L N L+G IP L N TNL + L +N L+G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS 284
IG L++L L+L++N+ SG+IP LG+ +L+ L+L+ N +G IP +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
S+ L + N LSG IP +G++ L L L N +SGSI +E+G+L+ L L+L+SN L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIP 282
G IP + LT L ++LS+N LSG IP
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 218 NLATLYLDS--NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
N + ++LD N LSG I EIG++ L+ L L N +SGSIP +G+L L +L+LS N
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
KL G IP + LT LT + + N++ G I
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 168 TWPTW-----LLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA 220
T PT+ +++LD+ N +SG I EI S+ LF L LG N +SGSIP +G+L L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 221 TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP 258
L L SN L G I + L L ++L++N LSG IP
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 8/192 (4%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L + N ISG + ++ +L L + N S IP LG+ + L L + N LSG
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSF-GNLTNL 291
I L L ++SN G IP LPL +L L L++NK +G IP G L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 292 TTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXIPLSLTNLTNSLEVVCLSSNHIV 351
T L + N +G++ +P+ L+V+ LS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 352 GEIPLELRKHSS 363
GE+P L S+
Sbjct: 357 GELPESLTNLSA 368
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 50/266 (18%)
Query: 138 IQQSVMFSMLFH--VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSL 195
I Q +M+ +LDF ++ T W+ L N ++G I I L++L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENL 516
Query: 196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI------------LNEIGNLKSL 243
L+L +N+ SG+IP LG+ +L L L++N +G+I N I + +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 244 YY----------------------------------LELTSNTLSGSIPLPLGNLTNLVV 269
Y +TS G N +++
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXI 329
L++S N LSG IP G++ L L + N I GSI DE I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 330 PLSLTNLTNSLEVVCLSSNHIVGEIP 355
P +++ LT L + LS+N++ G IP
Sbjct: 697 PQAMSALT-MLTEIDLSNNNLSGPIP 721
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 145 SMLFHVLDFPHTAYSDSMEEAHVTWP-TWLLYLDINAISGSILDEIRSLKSLFNLRLGDN 203
SM+F LD + S + + + P ++L L N ISGSI DE+ L+ L L L N
Sbjct: 633 SMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP 260
L G IP ++ LT L + L +N LSG I E+G ++ + +N PLP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMGQFETFPPAKFLNNPGLCGYPLP 746
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 173 LLYLDINAISGS------ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226
+L L N+ISG+ + D LK +L + N +SG + +S NL L + S
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS--RCVNLEFLDVSS 209
Query: 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFG 286
N S I +G+ +L +L+++ N LSG + T L +L +S N+ G IPP
Sbjct: 210 NNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266
Query: 287 NLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXXXXXXXIPLSLTNLTNSLEVVCLS 346
L +L L + +N G IP L+ ++L + LS
Sbjct: 267 PLKSLQYLSLAENKFTGE------------------------IPDFLSGACDTLTGLDLS 302
Query: 347 SNHIVGEIP 355
NH G +P
Sbjct: 303 GNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LY+ +SG+I D + +K+L L N LSG++P S+ +L NL + D N +SG+I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 234 LNEIGNLKSLYY-LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
+ G+ L+ + ++ N L+G IP NL NL ++LS N L G FG+ N
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 293 TLYVYKNSI 301
+++ KNS+
Sbjct: 225 KIHLAKNSL 233
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 201 GDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP 260
G N L G IP ++ LT L LY+ +SG+I + + +K+L L+ + N LSG++P
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 261 LGNLTNLVVLELSDNKLSGLIPPSFGNLTNL-TTLYVYKNSIFGSI 305
+ +L NLV + N++SG IP S+G+ + L T++ + +N + G I
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 165 AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224
A++ + +L IN + G I I L L L + +SG+IP L + L TL
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV-LELSDNKLSGLIPP 283
NALSG++ I +L +L + N +SG+IP G+ + L + +S N+L+G IPP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 284 SFGNLTNLTTLYVYKNSIFG 303
+F NL NL + + +N + G
Sbjct: 193 TFANL-NLAFVDLSRNMLEG 211
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 209 IPLSLGNLTNLATLYLDS-NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
IP SL NL L LY+ N L G I I L L+YL +T +SG+IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308
V L+ S N LSG +PPS +L NL + N I G+I D
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 36/179 (20%)
Query: 153 FPHTAYSDSMEEA----HVTWPTWLLYLD-INAISG-----SILDEIRSLKSLFNLRLGD 202
FP A +++++ A +VT LD I +S + ++ I+ L +L L L D
Sbjct: 19 FPDPALANAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKD 78
Query: 203 NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL--- 259
N ++ PL NLT + L L N L ++ I L+S+ L+LTS ++ PL
Sbjct: 79 NQITDLTPLK--NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGL 134
Query: 260 -----------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
PL LTNL L + +N+++ L P NL+ LTTL N I
Sbjct: 135 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
I L+S+ L L ++ PL+ L+NL LYLD N ++ ++ + L +L YL +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSI 164
Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
+N ++ PL NL+ L L DNK+S + P +L NL +++ N I
Sbjct: 165 GNNQVNDLTPL--ANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQI 213
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 180 AISGSILDEIRSLKSLFNLR---LGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE 236
A+ G+ L +I +LK L NL L N L LTNL L L N L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 237 IGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
L +L YL L N L LP G LTNL L+LS N+L L F LT L
Sbjct: 129 FDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 294 LYVYKNSI 301
L +Y+N +
Sbjct: 186 LRLYQNQL 193
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 21/153 (13%)
Query: 160 DSMEEAHVTWPT------WLLYLDINAISG---SILDEIRSLKSLFNLRLGDNTLSGSIP 210
D + H + P +LYL N I+ + D + +LK L+ LG N L G++P
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELY---LGSNQL-GALP 80
Query: 211 LSL-GNLTNLATLYLDSNALS---GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
+ + +LT L L L +N L+ ++ + + +LK L+ + N L+ +P + LT+
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF---MCCNKLT-ELPRGIERLTH 136
Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
L L L N+L + +F L++LT Y++ N
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
+P G TN +L L DN+++ L P F +L NL LY+ N +
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSG 231
LLYL+ N + + LK+L L + DN L ++P+ + L NLA L LD N L
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNL 288
+L L YL L N L LP G LT+L L L +N+L + +F L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 289 TNLTTLYVYKNSI 301
T L TL + N +
Sbjct: 181 TELKTLKLDNNQL 193
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 198 LRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS---GSILNEIGNLKSLYYLELTSNTLS 254
L L N LS + LT L LYL+ N L I E+ NL++L+ +T N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTDNKLQ 98
Query: 255 GSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LP+G L NL L L N+L L P F +LT LT L + N +
Sbjct: 99 A---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 175 YLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL 234
Y ++ ++ + D++ SLK L RL +N L + LT L TL LD+N L
Sbjct: 142 YNELQSLPKGVFDKLTSLKEL---RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 235 NEIGNLKSLYYLELTSN 251
+L+ L L+L N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 167 VTWPTWL--LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLY 223
+T TWL Y + +S + D++ L +L L +N L+ S+PL + +LT L LY
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---GLANNQLA-SLPLGVFDHLTQLDKLY 113
Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIP 282
L N L L L L L +N L SIP LTNL L LS N+L +
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 283 PSFGNLTNLTTLYVYKNSI 301
+F L L T+ ++ N
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 167 VTWPTWL--LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLY 223
+T TWL Y + +S + D++ L +L L +N L+ S+PL + +LT L LY
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---GLANNQLA-SLPLGVFDHLTQLDKLY 113
Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIP 282
L N L L L L L +N L SIP LTNL L LS N+L +
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 283 PSFGNLTNLTTLYVYKNSI 301
+F L L T+ ++ N
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 228 ALSGSILNEIGNLK---SLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLI 281
AL G+ L++I LK +L YL LT N L LP G LTNL L L +N+L L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 282 PPSFGNLTNLTTLYVYKNSI 301
F LTNLT LY+Y N +
Sbjct: 126 DGVFDKLTNLTYLYLYHNQL 145
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 180 AISGSILDEIRSLKSLFNLR---LGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE 236
A+ G+ L +I +LK L NL L N L LTNL L L N L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 237 IGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
L +L YL L N L LP G LTNL L+L +N+L L F LT L
Sbjct: 129 FDKLTNLTYLYLYHNQLQS---LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 294 LYVYKNSI 301
L + N +
Sbjct: 186 LSLNDNQL 193
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 178 INAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI 237
+ ++ + D++ +LK L L +N L LTNL LYL N L
Sbjct: 97 LQSLPNGVFDKLTNLKELV---LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
Query: 238 GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294
L +L L+L +N L LP G LT L L L+DN+L + F LT+LT +
Sbjct: 154 DKLTNLTRLDLDNNQLQS---LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Query: 295 YVYKN 299
++ N
Sbjct: 211 WLLNN 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL+ NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL-------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
+SNT+S L PL NLT L L++S NK+S + LT
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 194
Query: 290 NLTTLYVYKNSI 301
NL +L N I
Sbjct: 195 NLESLIATNNQI 206
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 224
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 285 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 111
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS---------FGN-------LT 289
L L +N ++ PL NLTNL LELS N +S + S FGN L
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLA 169
Query: 290 NLTTL 294
NLTTL
Sbjct: 170 NLTTL 174
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 35/177 (19%)
Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG 207
L+F +D A++T L LDI++ S + + L +L +L +N +S
Sbjct: 153 LQQLNFSSNQVTDLKPLANLTT---LERLDISSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYL---ELTSNTLSGSIPL----- 259
PL G LTNL L +L+G+ L +IG L SL L +L +N +S PL
Sbjct: 210 ITPL--GILTNLDEL-----SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 260 ---------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
PL LT L LEL++N+L + P NL NLT L +Y N+I
Sbjct: 263 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 26/133 (19%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL+ NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL--------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
+SNT+S L PL NLT L L++S NK+S + L
Sbjct: 137 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 194
Query: 289 TNLTTLYVYKNSI 301
TNL +L N I
Sbjct: 195 TNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 111
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L L +N ++ PL NLTNL LELS N +S + + LT+L L N +
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQV 163
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 225
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 286 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 26/133 (19%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 81 LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL--------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
+SNT+S L PL NLT L L++S NK+S + L
Sbjct: 137 SSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 194
Query: 289 TNLTTLYVYKNSI 301
TNL +L N I
Sbjct: 195 TNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 111
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L L +N ++ PL NLTNL LELS N +S + + LT+L L N +
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV 163
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL+ NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL-------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
+SNT+S L PL NLT L L++S NK+S + LT
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 194
Query: 290 NLTTLYVYKNSI 301
NL +L N I
Sbjct: 195 NLESLIATNNQI 206
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 224
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 285 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 111
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS---------FGN-------LT 289
L L +N ++ PL NLTNL LELS N +S + S FGN L
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLA 169
Query: 290 NLTTL 294
NLTTL
Sbjct: 170 NLTTL 174
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 225
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 226 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 285
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 286 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 26/133 (19%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 81 LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL--------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
+SNT+S L PL NLT L L++S NK+S + L
Sbjct: 137 SSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 194
Query: 289 TNLTTLYVYKNSI 301
TNL +L N I
Sbjct: 195 TNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 111
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L L +N ++ PL NLTNL LELS N +S + + LT+L L N +
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQV 163
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG---SILNEIGNLKSLYYL 246
++L + N+RL ++ IP T+ L+L++N ++ + + + NL+ LY+
Sbjct: 14 QTLVNCQNIRLA--SVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF- 64
Query: 247 ELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
SN L+ +P G LT L L+L+DN L + +F NL +LT +Y+Y N
Sbjct: 65 --NSNKLTA---IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL+ NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 86 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 141
Query: 249 TSNTLSGSIPL-------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
+SNT+S L PL NLT L L++S NK+S + LT
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 199
Query: 290 NLTTLYVYKNSI 301
NL +L N I
Sbjct: 200 NLESLIATNNQI 211
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 229
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 123 GPLAPPQMRSCCP--KFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLY--LDI 178
GPL + P + + + + VL T +D++ + + T L L I
Sbjct: 1 GPLGSATITQDTPINQIFTDTALAEKMKTVLG--KTNVTDTVSQTDLDQVTTLQADRLGI 58
Query: 179 NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG 238
+I G + L +L + +N L+ PL NLT L + +++N ++ + +
Sbjct: 59 KSIDG-----VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLA 109
Query: 239 NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN------KLSGLIP---PSFGN-- 287
NL +L L L +N ++ PL NLTNL LELS N LSGL SFGN
Sbjct: 110 NLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 167
Query: 288 -----LTNLTTL 294
L NLTTL
Sbjct: 168 TDLKPLANLTTL 179
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
+++L L ++ + +N ++ PL+ NLTNL L L +N ++ ++ + NL +L LEL
Sbjct: 85 LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 140
Query: 249 TSNTLSGSIPL-------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
+SNT+S L PL NLT L L++S NK+S + LT
Sbjct: 141 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 198
Query: 290 NLTTLYVYKNSI 301
NL +L N I
Sbjct: 199 NLESLIATNNQI 210
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L LDI++ S + + L +L +L +N +S PL G LTNL L +L+
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL-----SLN 228
Query: 231 GSILNEIGNLKSLYYL---ELTSNTLSGSIPL--------------------PLGNLTNL 267
G+ L +IG L SL L +L +N +S PL PL LT L
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 288
Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LEL++N+L + P NL NLT L +Y N+I
Sbjct: 289 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 320
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+D + L +L + +N L+ PL NLT L + +++N ++ + + NL +L
Sbjct: 60 IDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTG 115
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDN------KLSGLIP---PSFGN-------LT 289
L L +N ++ PL NLTNL LELS N LSGL SFGN L
Sbjct: 116 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 173
Query: 290 NLTTL 294
NLTTL
Sbjct: 174 NLTTL 178
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 56/134 (41%), Gaps = 30/134 (22%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T LL L N I DE S L L L +N +S P + NL NL TL L SN L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGN 287
+PLG L+NL L++S+NK+ L+ F +
Sbjct: 94 ---------------------------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Query: 288 LTNLTTLYVYKNSI 301
L NL +L V N +
Sbjct: 127 LYNLKSLEVGDNDL 140
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
+ I L+S+ L L ++ PL+ L+NL LYLD N ++ ++ + L +L Y
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITN--ISPLAGLTNLQY 155
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L + + +S PL NL+ L L+ DNK+S + P +L NL +++ N I
Sbjct: 156 LSIGNAQVSDLTPL--ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L YL I S L + +L L L+ DN +S PL+ +L NL ++L +N +S
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQIS 208
Query: 231 GSILNEIGNLKSLYYLELTSNTLS 254
++ + N +L+ + LT+ T++
Sbjct: 209 D--VSPLANTSNLFIVTLTNQTIT 230
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 157 AYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL 216
YS P YLD+ E SLKSL N + L
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDL---------ETNSLKSLPNGVFDE-------------L 51
Query: 217 TNLATLYLDSNALSGSILNEIGN-LKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLEL 272
T+L LYL N L S+ N + N L SL YL L++N L LP G LT L L L
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS---LPNGVFDKLTQLKELAL 107
Query: 273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
+ N+L L F LT L L +Y+N +
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL 277
++ LYLD N + + E+ N K L ++L++N +S N+T L+ L LS N+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 278 SGLIPPSFGNLTNLTTLYVYKNSI 301
+ P +F L +L L ++ N I
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LYLD N + + E+ + K L + L +N +S S N+T L TL L N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 234 LNEIGNLKSLYYLELTSNTLS 254
LKSL L L N +S
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 195 LFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLS 254
L +L++G+N ++ PL+ NL+ L L + +N +S +N + +L L L + SN +S
Sbjct: 223 LNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQIS 278
Query: 255 GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
I + L NL+ L L L++N+L G LTNLTTL++ +N I
Sbjct: 279 -DISV-LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 167 VTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226
+ + T L YL++N + + + +L L NL +G N ++ +L NLTNL LYL+
Sbjct: 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119
Query: 227 NALSGSILNEIGNLKSLYYLELTSN-TLSGSIPL--------------------PLGNLT 265
+ +S ++ + NL Y L L +N LS PL P+ NLT
Sbjct: 120 DNISD--ISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLT 177
Query: 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
+L L L+ N++ + P +LT+L Y N I
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 165 AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224
A+++ TWL + N IS ++ ++ L L L +G N +S I + L NL+ L +L+L
Sbjct: 240 ANLSQLTWL-EIGTNQISD--INAVKDLTKLKXLNVGSNQIS-DISV-LNNLSQLNSLFL 294
Query: 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL 259
++N L IG L +L L L+ N ++ PL
Sbjct: 295 NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
L L LYL NAL + +L +L +L L N +S L +L L L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSI 301
+++ + P +F +L L TLY++ N++
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNL 213
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+L N IS R L SL L L N ++ P + +L L TLYL +N LS
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 234 LNEIGNLKSLYYLELTSN 251
+ L++L YL L N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
R L +L L L DN L + +L NL L+L N +S L SL L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
N ++ P +L L+ L L N LS L + L L L + N
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LYL NA+ D R L +L +L L N +S + L +L L L N ++
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
+ +L L L L +N LS L L L L L+DN
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
L L LYL NAL + +L +L +L L N +S L +L L L N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSI 301
+++ + P +F +L L TLY++ N++
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNL 212
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+L N IS R L SL L L N ++ P + +L L TLYL +N LS
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 234 LNEIGNLKSLYYLELTSN 251
+ L++L YL L N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
R L +L L L DN L + +L NL L+L N +S L SL L L
Sbjct: 124 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 183
Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
N ++ P +L L+ L L N LS L + L L L + N
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
LYL NA+ D R L +L +L L N +S + L +L L L N ++
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
+ +L L L L +N LS L L L L L+DN
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 54 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLK 106
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ I + L LT L L L DN+
Sbjct: 107 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 165 ISDIVP--LAGLTKLQNLYLSKNHI 187
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 57 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSSLK 109
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ I + L LT L L L DN+
Sbjct: 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 167
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 57 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSSLK 109
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 167
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHI 190
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA----L 229
++L N IS +S ++L L L N L+G + LT L L L NA +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
+ +G+L +L+ L L P L L L L DN L L +F +L
Sbjct: 96 DPTTFRGLGHLHTLH---LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 290 NLTTLYVYKNSI 301
NLT L+++ N I
Sbjct: 153 NLTHLFLHGNRI 164
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+L N I R L SL L L N ++ P + +L L TLYL +N LS
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 234 LNEIGNLKSLYYLELTSN 251
+ L+SL YL L N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
R L +L L L DN L + +L NL L+L N + + L SL L L
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL 280
N ++ P +L L+ L L N LS L
Sbjct: 184 HQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 55 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSSLK 107
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 108 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 165
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 166 ISDIVP--LAGLTKLQNLYLSKNHI 188
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 52 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSSLK 104
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 105 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 162
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 163 ISDIVP--LACLTKLQNLYLSKNHI 185
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
L++L+TL L N + L L SL L L+ P+G+L L L ++ N
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 276 KLSGL-IPPSFGNLTNLTTLYVYKNSI 301
+ +P F NLTNL L + N I
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY----LDSNALSGSILN-EIGNLKSLY 244
+SL L L L N + L+LG + L++L L++N S+ N IG+LK+L
Sbjct: 75 QSLSHLSTLILTGNPIQS---LALGAFSGLSSLQKLVALETNL--ASLENFPIGHLKTLK 129
Query: 245 YLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
L + N + S +P NLTNL L+LS NK+ +
Sbjct: 130 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 75 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLK 127
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 128 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 185
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 186 ISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 75 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLK 127
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 128 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 185
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 186 ISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 55 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSSLK 107
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 108 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 165
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+ ++P LT L LY+ KN I
Sbjct: 166 IRRIVP--LARLTKLQNLYLSKNHI 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
+L++L+TL L N + L L SL L L+ P+G+L L L ++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 275 NKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
N + +P F NLTNL L + N I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 75 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLK 127
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 128 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 185
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 186 ISDIVP--LAGLTKLQNLYLSKNHI 208
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
L++L+TL L N + L L SL L L+ P+G+L L L ++ N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 276 KLSGL-IPPSFGNLTNLTTLYVYKNSI 301
+ +P F NLTNL L + N I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 237 IGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGL 280
IG+LK+L L + N + S +P NLTNL L+LS NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 243 LYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L L L N+L+ +P + NL+NL VL+LS N+L+ L P G+ L Y + N +
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMV 305
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 31/145 (21%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----- 231
DI ++ G I+ L ++ L L N L+ PL+ NL NL L+LD N +
Sbjct: 52 DIKSVQG-----IQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSSLK 104
Query: 232 ---------------SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
S +N + +L L L L +N ++ L LT L L L DN+
Sbjct: 105 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQ 162
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
+S ++P LT L LY+ KN I
Sbjct: 163 ISDIVP--LAGLTKLQNLYLSKNHI 185
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 53/167 (31%)
Query: 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE 236
DI ++ G I+ L +L +L L +N ++ P+ L N+ L+L+ N L+ +
Sbjct: 55 DIKSVQG-----IQYLPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTD--IKP 105
Query: 237 IGNLKSLYYLELTSNT-------------------------LSGSIPLP------LGN-- 263
+ NLK+L +L L N ++G + LP LGN
Sbjct: 106 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 165
Query: 264 ---------LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
LT L L L DN++S ++P LT L LY+ KN I
Sbjct: 166 ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 237 IGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV 296
G L L LEL N L+G P +++ L+L +NK+ + F L L TL +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 297 YKNSI 301
Y N I
Sbjct: 110 YDNQI 114
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
TN+ L L N L L L++ NT+S P L L VL L N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
LS L +F TNLT L++ NSI
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSI 109
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
TN+ L L N L L L++ NT+S P L L VL L N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
LS L +F TNLT L++ NSI
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSI 114
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
TN+ L L N L L L++ NT+S P L L VL L N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
LS L +F TNLT L++ NSI
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275
LTNL +L L N L+ + +L YL+L+SN L +L L VL L +N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSI 301
+ + +F ++ L LY+ +N I
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---N 263
S+P + T + LYL N ++ L L L+L +N L+ LP G
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDK 84
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
LT L L L+DN+L + +F NL +LT +++ N
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---N 263
S+P + T + LYL N ++ L L L+L +N L+ LP G
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDK 76
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
LT L L L+DN+L + +F NL +LT +++ N
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 170 PTWLLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL--GNLTNLATLYLD 225
P+ +L+ N + S+ +LK L L L N L ++L N+++L TL +
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 226 SNALSGSILNEIGN-LKSLYYLELTSNTLSGS---------------------IPLPLGN 263
N+L+ + +S+ L L+SN L+GS IP + +
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
L L L ++ N+L + F LT+L ++++ N
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
TN L L N + +N +L+ L L+L+ N + L NL LEL DN+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSI 301
L+ + +F L+ L L++ N I
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPI 148
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---N 263
S+P + T + LY+ N ++ +L L YL L N L+ LP+G
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTA---LPVGVFDK 86
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
LT L L L N+L + F NL +LT +Y++ N
Sbjct: 87 LTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---N 263
S+P + T + LYL N ++ L L L+L +N L+ LP G
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDK 76
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
LT L L L+DN+L + +F NL +LT +++ N
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L+L +N ++ NL NL L L +NK+S + P +F L L LY+ KN +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE--IGNLKSLYYLELTS 250
K+L LR+ +N ++ L + + L +N L S + +K L Y+ +
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
++ +P G +L L L NK++ + S L NL L + NSI
Sbjct: 181 TNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L+L +N ++ NL NL L L +NK+S + P +F L L LY+ KN +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE--IGNLKSLYYLELTS 250
K+L LR+ +N ++ L + + L +N L S + +K L Y+ +
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180
Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
++ +P G +L L L NK++ + S L NL L + NSI
Sbjct: 181 TNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L L+++ + L +L L L L N L S+PL L L L + N L+
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
L + L L L L N L P L L L L++N+L+ L L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 291 LTTLYVYKNSIF 302
L TL + +NS++
Sbjct: 174 LDTLLLQENSLY 185
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 2 NIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVL 46
N A NDL + L TG +G+ +H+ P ++ YFDP L
Sbjct: 152 NTARQNDLKVIKNL----TGHGVGLSLHEAPAHVLNYFDPKDKTL 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L L+++ + L +L L L L N L S+PL L L L + N L+
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
L + L L L L N L P L L L L++N+L+ L L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 291 LTTLYVYKNSIF 302
L TL + +NS++
Sbjct: 174 LDTLLLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L L+++ + L +L L L L N L S+PL L L L + N L+
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
L + L L L L N L P L L L L++N+L+ L L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 291 LTTLYVYKNSIF 302
L TL + +NS++
Sbjct: 174 LDTLLLQENSLY 185
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 173 LLYLDINAISGSILDEIR-----SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
L +L+I +S +++ +I L SL L L DN L+ + L+ L L+L +N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 228 ---ALSGSILNEI--------GNLKSLYYL-ELTSNTLSGSIPLPLG--------NLTNL 267
++ N + G LK L Y+ E L L LG NLT L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 268 VVLE---LSDNKLSGLIPPSFGNLTNLTTLYV 296
V LE LS N+L + P SF LT+L L++
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
SIP+ N L L N++ + +L+ L L+L+ N + L +
Sbjct: 31 ASIPV------NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
L LEL DN+L+ + +F L+ L L++ N I
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
T L L+++ + L +L L L L N L S+PL L L L + N L+
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
L + L L L L N L P L L L L++N+L+ L L N
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 291 LTTLYVYKNSIF 302
L TL + +NS++
Sbjct: 174 LDTLLLQENSLY 185
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 34 EMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQ 66
E+ + PC V G IG+G + +GY+ + K+
Sbjct: 173 ELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKK 205
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
L+LD N I L+++ L+ L LG N + SL L L L+LD+N LS +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256
Query: 234 LNEIGNLKSLYYLELTSNTLS 254
+ +LK L + L +N ++
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT 277
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 173 LLYLDINAISGSILDEIR-----SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
L +L+I +S +++ +I L SL L L DN L+ + L+ L L+L +N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 228 ---ALSGSILNEI--------GNLKSLYYL-ELTSNTLSGSIPLPLG--------NLTNL 267
++ N + G LK L Y+ E L L LG NLT L
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 268 VVLE---LSDNKLSGLIPPSFGNLTNLTTLYV 296
V LE LS N+L + P SF LT+L L++
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 151 LDFPHTAYSDSMEE--AHVTWPTWLLYLDINAIS--GSILDEIRSLKSLFNLRLGDNTLS 206
LDF + +D++ E H+T L+ L +N + I + +KSL L + N++S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLI-LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 207 GSIPLSLGNLT-NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT 265
+ T +L +L + SN L+ +I + + L+L SN + SIP + L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE 444
Query: 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
L L ++ N+L + F LT+L ++++ N
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 203 NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN---TLSGSIPL 259
NT+ G SLG+L +L L N LS + G L SL YL L N TL +
Sbjct: 89 NTIEGDAFYSLGSLEHLD---LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 260 PLGNLTNLVVLELSD-NKLSGLIPPSFGNLTNLTTLYV-------YKNSIFGSILD 307
P NLTNL L + + S + F LT+L L + Y++ SI D
Sbjct: 146 P--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 199
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 203 NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN---TLSGSIPL 259
NT+ G SLG+L +L L N LS + G L SL YL L N TL +
Sbjct: 63 NTIEGDAFYSLGSLEHLD---LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 260 PLGNLTNLVVLELSD-NKLSGLIPPSFGNLTNLTTLYV-------YKNSIFGSILD 307
P NLTNL L + + S + F LT+L L + Y++ SI D
Sbjct: 120 P--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,701,200
Number of Sequences: 62578
Number of extensions: 373044
Number of successful extensions: 1184
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 225
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)