Query 045705
Match_columns 365
No_of_seqs 461 out of 3070
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 100.0 1.5E-33 3.3E-38 257.0 5.8 139 1-140 686-826 (1077)
2 PLN00113 leucine-rich repeat r 100.0 3E-28 6.6E-33 254.6 14.8 222 142-364 160-382 (968)
3 PLN00113 leucine-rich repeat r 100.0 6.3E-28 1.4E-32 252.3 15.2 224 141-365 183-407 (968)
4 PF04950 DUF663: Protein of un 99.9 5.7E-27 1.2E-31 207.4 0.0 122 16-138 72-193 (297)
5 KOG4194 Membrane glycoprotein 99.9 1.2E-23 2.5E-28 194.1 1.5 209 141-351 144-354 (873)
6 KOG4194 Membrane glycoprotein 99.9 5.3E-23 1.1E-27 189.8 5.2 226 138-364 117-343 (873)
7 KOG0444 Cytoskeletal regulator 99.8 2.2E-23 4.8E-28 193.8 -3.5 219 140-363 97-317 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1.5E-23 3.2E-28 194.9 -5.1 216 144-365 76-294 (1255)
9 KOG0617 Ras suppressor protein 99.8 2.6E-22 5.6E-27 158.6 -3.2 164 191-361 31-195 (264)
10 KOG0472 Leucine-rich repeat pr 99.8 4.6E-22 9.9E-27 176.3 -7.3 207 146-361 91-297 (565)
11 KOG0617 Ras suppressor protein 99.8 5.1E-21 1.1E-25 151.3 -5.0 176 170-351 34-212 (264)
12 KOG0472 Leucine-rich repeat pr 99.8 5.2E-21 1.1E-25 169.6 -7.5 220 136-364 58-277 (565)
13 PLN03210 Resistant to P. syrin 99.7 2.9E-16 6.2E-21 165.9 17.3 220 138-364 626-895 (1153)
14 KOG4237 Extracellular matrix p 99.7 2.4E-18 5.3E-23 152.5 -3.0 219 145-364 66-348 (498)
15 PLN03210 Resistant to P. syrin 99.7 2.2E-15 4.8E-20 159.2 17.1 212 146-365 611-872 (1153)
16 PRK15387 E3 ubiquitin-protein 99.6 6.8E-16 1.5E-20 153.2 11.6 87 266-362 383-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 8.1E-16 1.8E-20 153.3 11.4 189 147-360 221-409 (754)
18 KOG0618 Serine/threonine phosp 99.6 8.6E-18 1.9E-22 163.0 -2.6 197 145-349 240-487 (1081)
19 PRK15370 E3 ubiquitin-protein 99.6 4.3E-16 9.4E-21 155.2 9.1 186 147-357 200-385 (754)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-16 2.4E-21 146.8 2.6 211 142-353 47-293 (319)
21 KOG4237 Extracellular matrix p 99.6 1E-17 2.2E-22 148.5 -4.0 209 142-351 87-359 (498)
22 PRK15387 E3 ubiquitin-protein 99.6 7.1E-15 1.5E-19 146.0 13.4 66 290-365 383-448 (788)
23 KOG0618 Serine/threonine phosp 99.6 4.1E-17 8.9E-22 158.4 -3.4 212 143-363 216-453 (1081)
24 cd00116 LRR_RI Leucine-rich re 99.6 2.7E-16 5.8E-21 144.2 1.6 210 141-350 76-319 (319)
25 KOG1980 Uncharacterized conser 99.5 9.4E-15 2E-19 136.0 7.6 133 4-137 499-639 (754)
26 KOG0532 Leucine-rich repeat (L 99.5 1.6E-15 3.4E-20 140.5 -3.6 178 172-360 78-255 (722)
27 COG4886 Leucine-rich repeat (L 99.4 2.8E-13 6E-18 128.0 5.3 199 150-357 97-296 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 1.9E-14 4E-19 133.5 -5.3 165 191-365 73-237 (722)
29 PLN03150 hypothetical protein; 99.3 9.2E-12 2E-16 123.5 8.7 113 243-355 420-532 (623)
30 COG4886 Leucine-rich repeat (L 99.2 8.1E-12 1.8E-16 118.1 5.9 180 146-332 116-296 (394)
31 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-12 1.2E-16 103.7 4.2 102 240-345 41-147 (175)
32 PLN03150 hypothetical protein; 99.2 3.1E-11 6.8E-16 119.8 8.7 110 219-328 420-530 (623)
33 PF14580 LRR_9: Leucine-rich r 99.2 7.5E-12 1.6E-16 102.9 3.4 126 191-321 17-148 (175)
34 KOG1259 Nischarin, modulator o 99.2 1.5E-12 3.3E-17 112.3 -1.2 131 191-327 282-413 (490)
35 KOG1259 Nischarin, modulator o 99.1 6.2E-12 1.3E-16 108.6 -0.8 131 215-352 282-413 (490)
36 KOG1909 Ran GTPase-activating 99.1 7.9E-12 1.7E-16 110.0 -0.9 199 140-350 86-310 (382)
37 KOG1909 Ran GTPase-activating 99.1 2.2E-11 4.7E-16 107.2 0.3 206 146-352 30-284 (382)
38 KOG3207 Beta-tubulin folding c 99.0 8.1E-11 1.8E-15 106.5 1.1 219 132-352 107-340 (505)
39 PF13855 LRR_8: Leucine rich r 99.0 3.9E-10 8.4E-15 76.4 3.7 61 193-253 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 7.8E-10 1.7E-14 74.9 3.2 59 266-324 2-60 (61)
41 KOG3207 Beta-tubulin folding c 98.8 5.9E-10 1.3E-14 101.0 0.0 184 143-327 143-340 (505)
42 KOG0531 Protein phosphatase 1, 98.8 3.2E-10 6.8E-15 107.7 -2.7 152 189-351 114-268 (414)
43 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.8E-14 103.6 -2.3 169 173-351 76-245 (414)
44 KOG1859 Leucine-rich repeat pr 98.7 5.3E-10 1.1E-14 107.1 -5.7 127 218-351 165-292 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.6 3.4E-08 7.3E-13 100.8 3.3 94 181-275 559-652 (889)
46 KOG1859 Leucine-rich repeat pr 98.5 1.5E-09 3.2E-14 104.1 -8.4 130 193-330 164-295 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.1E-08 2.4E-13 88.6 -3.8 177 171-350 187-375 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.4 2.6E-07 5.7E-12 79.3 4.0 209 145-354 29-288 (388)
49 KOG4658 Apoptotic ATPase [Sign 98.4 1.4E-07 3.1E-12 96.3 2.6 159 192-352 544-731 (889)
50 KOG4579 Leucine-rich repeat (L 98.4 1.4E-08 3.1E-13 78.1 -3.7 132 219-356 29-164 (177)
51 KOG4579 Leucine-rich repeat (L 98.3 2.5E-08 5.5E-13 76.8 -3.2 86 190-278 50-136 (177)
52 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.3E-13 87.8 -5.9 57 195-251 187-244 (419)
53 COG5177 Uncharacterized conser 98.2 8E-07 1.7E-11 81.7 3.9 122 5-128 513-644 (769)
54 KOG2982 Uncharacterized conser 98.2 6E-07 1.3E-11 78.1 2.1 85 170-254 72-159 (418)
55 KOG1644 U2-associated snRNP A' 98.1 6.6E-06 1.4E-10 67.8 5.1 103 194-298 43-149 (233)
56 PRK15386 type III secretion pr 98.0 2.5E-05 5.5E-10 72.4 9.3 54 192-251 51-104 (426)
57 COG5238 RNA1 Ran GTPase-activa 98.0 1.9E-06 4E-11 74.2 1.8 184 170-354 31-258 (388)
58 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.2E-10 51.5 3.1 36 194-230 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 98.0 6.8E-06 1.5E-10 51.1 3.3 36 314-351 2-37 (44)
60 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 66.5 5.0 125 196-324 22-151 (233)
61 KOG2982 Uncharacterized conser 97.9 1.8E-05 3.9E-10 69.1 5.6 85 192-276 70-157 (418)
62 PF13306 LRR_5: Leucine rich r 97.9 3.1E-05 6.7E-10 60.7 6.1 123 187-315 6-128 (129)
63 KOG3665 ZYG-1-like serine/thre 97.9 4.6E-06 9.9E-11 83.3 1.1 116 216-333 147-270 (699)
64 PRK15386 type III secretion pr 97.7 0.00013 2.8E-09 67.9 8.6 118 214-348 49-187 (426)
65 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 79.4 2.9 137 217-356 122-268 (699)
66 PF13306 LRR_5: Leucine rich r 97.5 0.00029 6.4E-09 55.1 7.0 107 211-322 6-112 (129)
67 KOG2739 Leucine-rich acidic nu 97.4 9.1E-05 2E-09 63.6 2.3 104 189-296 39-150 (260)
68 KOG2739 Leucine-rich acidic nu 97.4 7.5E-05 1.6E-09 64.1 1.7 86 188-275 60-153 (260)
69 KOG2123 Uncharacterized conser 97.2 2.2E-05 4.7E-10 68.0 -3.8 100 240-344 18-123 (388)
70 KOG2123 Uncharacterized conser 96.9 2.8E-05 6E-10 67.3 -5.5 64 190-255 38-102 (388)
71 PF00560 LRR_1: Leucine Rich R 96.6 0.00093 2E-08 34.6 0.9 22 339-361 1-22 (22)
72 KOG4308 LRR-containing protein 95.9 7.7E-05 1.7E-09 71.5 -9.5 161 190-351 112-303 (478)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0072 1.6E-07 31.2 1.1 11 196-206 3-13 (22)
74 KOG4308 LRR-containing protein 94.4 0.0003 6.4E-09 67.6 -10.7 166 195-360 89-284 (478)
75 PF13504 LRR_7: Leucine rich r 93.9 0.039 8.4E-07 26.4 1.3 13 339-351 2-14 (17)
76 smart00369 LRR_TYP Leucine-ric 92.3 0.15 3.2E-06 27.3 2.3 13 314-326 3-15 (26)
77 smart00370 LRR Leucine-rich re 92.3 0.15 3.2E-06 27.3 2.3 13 314-326 3-15 (26)
78 KOG0473 Leucine-rich repeat pr 92.1 0.0037 8.1E-08 53.1 -6.3 86 189-277 38-123 (326)
79 KOG3864 Uncharacterized conser 92.0 0.036 7.7E-07 46.2 -0.6 83 242-324 102-187 (221)
80 KOG1947 Leucine rich repeat pr 91.6 0.093 2E-06 50.7 1.8 132 215-347 186-330 (482)
81 KOG0473 Leucine-rich repeat pr 91.5 0.0028 6.2E-08 53.8 -7.6 88 236-326 37-124 (326)
82 smart00369 LRR_TYP Leucine-ric 89.9 0.33 7.2E-06 25.9 2.2 13 218-230 3-15 (26)
83 smart00370 LRR Leucine-rich re 89.9 0.33 7.2E-06 25.9 2.2 13 218-230 3-15 (26)
84 KOG1947 Leucine rich repeat pr 89.7 0.12 2.7E-06 49.8 0.6 174 190-364 185-389 (482)
85 PF13516 LRR_6: Leucine Rich r 89.0 0.14 3E-06 26.8 0.3 20 339-358 3-22 (24)
86 KOG3864 Uncharacterized conser 88.5 0.19 4E-06 42.1 0.8 85 264-349 100-187 (221)
87 smart00364 LRR_BAC Leucine-ric 86.3 0.46 9.9E-06 25.5 1.2 17 339-356 3-19 (26)
88 KOG4341 F-box protein containi 83.1 0.72 1.6E-05 42.9 1.8 133 216-349 293-437 (483)
89 smart00365 LRR_SD22 Leucine-ri 73.8 3 6.4E-05 22.4 1.8 13 218-230 3-15 (26)
90 smart00368 LRR_RI Leucine rich 73.8 2.8 6E-05 22.9 1.7 13 314-326 3-15 (28)
91 KOG4242 Predicted myosin-I-bin 72.1 20 0.00043 34.3 7.7 204 147-351 215-453 (553)
92 KOG4341 F-box protein containi 70.8 3.5 7.5E-05 38.6 2.6 134 191-324 292-437 (483)
93 KOG4242 Predicted myosin-I-bin 64.5 13 0.00028 35.5 4.9 60 194-253 215-280 (553)
94 KOG3763 mRNA export factor TAP 62.6 4.5 9.7E-05 39.2 1.7 37 239-275 216-254 (585)
95 KOG3763 mRNA export factor TAP 52.5 6.5 0.00014 38.2 0.9 64 191-254 216-283 (585)
96 smart00367 LRR_CC Leucine-rich 44.1 15 0.00033 19.3 1.2 12 217-228 2-13 (26)
97 TIGR00864 PCC polycystin catio 30.3 28 0.00061 40.8 1.6 32 175-206 1-32 (2740)
98 TIGR00864 PCC polycystin catio 28.1 37 0.0008 39.9 2.1 32 271-302 1-32 (2740)
99 PF08047 His_leader: Histidine 23.5 24 0.00052 16.0 -0.1 8 1-8 1-8 (16)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.5e-33 Score=257.04 Aligned_cols=139 Identities=41% Similarity=0.886 Sum_probs=134.7
Q ss_pred CchhhhcCCccchhc--cccccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceecccC
Q 045705 1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSR 78 (365)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~~~~ 78 (365)
|||.+|+.|+.+.|+ |||++|+||+|.++.||-+|+++|+..||.++||++++|..++.+|.+|+||+| ++++++++
T Consensus 686 inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTN 764 (1077)
T COG5192 686 INRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTN 764 (1077)
T ss_pred hhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccC
Confidence 689999999999987 999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CceEEeeccccccccceeeeecccccccccccccCccccceeeeeccCCCCCCCcccccccc
Q 045705 79 DPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQ 140 (365)
Q Consensus 79 ~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~~~~ 140 (365)
||++||+||||||++|+|++.|...++||++|+|+||+|..+||||+|++++++|++++-..
T Consensus 765 dPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse~g 826 (1077)
T COG5192 765 DPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKG 826 (1077)
T ss_pred CCeEEEechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999987433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3e-28 Score=254.62 Aligned_cols=222 Identities=37% Similarity=0.494 Sum_probs=189.3
Q ss_pred cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCc
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA 220 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~ 220 (365)
+...+.|++||+++|.+.+.+|..+.. ..++.++|+.|.+.+..|..++.+++|+.|++++|.+.+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 344557888899888888777765543 3567788888888888888888888899999998888888888888888999
Q ss_pred EEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705 221 TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 221 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 300 (365)
+|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 99999998888888888888999999999998888888888888889999999998888888888888899999999998
Q ss_pred cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
+.+..|..+..+++|+.|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..+++|
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCC
Confidence 8888888888889999999999999888888888887 69999999999988888888877665
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=6.3e-28 Score=252.27 Aligned_cols=224 Identities=36% Similarity=0.471 Sum_probs=206.6
Q ss_pred ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
.+...+.|++|++++|.+.+.+|..+.. ..++.++|+.|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 3455668999999999998888876654 367789999999999999999999999999999999999999999999999
Q ss_pred cEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecc
Q 045705 220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299 (365)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 299 (365)
++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+.+.+|..+..+++|+.|++++|.+++.+|..+...+ +|+.|++++|.+++.+|..++.+++|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCC
Confidence 99989999999999999999999999999999998887 799999999999999999999988874
No 4
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=99.92 E-value=5.7e-27 Score=207.44 Aligned_cols=122 Identities=45% Similarity=0.841 Sum_probs=0.0
Q ss_pred cccccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceecccCCceEEeeccccccccce
Q 045705 16 EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPV 95 (365)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~~~~~p~~~s~gw~~~~~l~~ 95 (365)
+|++||+||+|++.++|+++++++|.++|.++||++++|++++++|+++++|+| ++++++++||+++++|||||++.|+
T Consensus 72 ~g~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pi 150 (297)
T PF04950_consen 72 EGVRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPI 150 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eeeecccccccccccccCccccceeeeeccCCCCCCCcccccc
Q 045705 96 YAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFI 138 (365)
Q Consensus 96 ~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~~ 138 (365)
|+..+.+.+++|++++|++++|.++++||+.+++++..+++..
T Consensus 151 fs~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~ 193 (297)
T PF04950_consen 151 FSQEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKES 193 (297)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998887754
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-23 Score=194.12 Aligned_cols=209 Identities=24% Similarity=0.201 Sum_probs=138.2
Q ss_pred ccccccceeeeccCCCCCCCcchhhhcc--ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT--WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN 218 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~ 218 (365)
.+...+.|++||||.|.++. ++...+. .+++.++|+.|.|+......|..+.+|..|.|+.|+++...+.+|.++++
T Consensus 144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 35666778889999988854 4433322 46777888888888888888888888888888888888777778888888
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 298 (365)
|+.|+|..|+|...---.|.++++|+.|.|..|.+...-...|..|.++++|+|+.|++...-...+-++++|+.|+|++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 88888888888643344566677777776666666644455566666666666666666655555555666666666666
Q ss_pred cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
|.|..+.++...-+++|+.|||+.|+++..-+..+..+. .|++|+|+.|.++
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSID 354 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchH
Confidence 666555555555566666666666666533333333333 3444444444333
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.3e-23 Score=189.81 Aligned_cols=226 Identities=24% Similarity=0.155 Sum_probs=192.5
Q ss_pred cccccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCC
Q 045705 138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL 216 (365)
Q Consensus 138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l 216 (365)
++.....+..++.|+|.+|.|...-...... ..++.++|+.|.|+.+.-..|..=.++++|+|++|+|+....+.|..+
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc
Confidence 3334444557999999999997665554433 356789999999997766777777889999999999999999999999
Q ss_pred CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEe
Q 045705 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV 296 (365)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 296 (365)
.+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-..+|-.+.++++|+|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 99999999999999777788999999999999999998443567899999999999999999888899999999999999
Q ss_pred eccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 297 YKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 297 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
..|+++..-..++.+++.|+.|+|++|.|...-++...-. ++|+.|||++|+|+...+..|..++.|
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHh
Confidence 9999988888899999999999999999995555554444 489999999999998778888776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.2e-23 Score=193.78 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=139.1
Q ss_pred cccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 140 QSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 140 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
..+....-|.+||||+|++.............-+++|++|+|..+.-..|.+++.|-.||||+|++. .+|..+..+..|
T Consensus 97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML 175 (1255)
T ss_pred chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence 3455566799999999999654444444556678999999999766667788999999999999998 778888899999
Q ss_pred cEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705 220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 298 (365)
++|+|++|++.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+.+-.+.+|+.|+|++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence 99999999876333333444555555555554432 244555555556666666666555 4455555556666666666
Q ss_pred cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcCCC
Q 045705 299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKHSS 363 (365)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l~~ 363 (365)
|+|+.. .-..+...+|++|+|+.|+++ .+|.++..++ .|+.|.+.+|+++ .-+|..++++..
T Consensus 255 N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 255 NKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred Cceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhh
Confidence 655322 222334445555555555555 5555555555 3555555555544 234555554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.5e-23 Score=194.90 Aligned_cols=216 Identities=23% Similarity=0.246 Sum_probs=183.4
Q ss_pred cccceeeeccCCCCCC--CcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 144 FSMLFHVLDFPHTAYS--DSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
..+.|+.+++.+|++. |..++.+....++.++|+.|++. ..|..+..-+++-+|+||+|+|..+....|.++.-|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 3446788888888775 33344444457788999999998 78888888899999999999999666666788999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC-CCCCccCcCCCccceEEeeccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-GLIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 300 (365)
||||+|.+. .+|..+..+..|++|.|++|.+....-..+..|++|++|.+++..-+ .-+|.++..+.+|..++++.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 999999997 78888999999999999999987655556677888999999987654 3488999999999999999999
Q ss_pred cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+ ...|+.+..+.+|+.|+|++|+|+ .+........ +|++|++|.|+++ .+|..++++++|+
T Consensus 234 L-p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 234 L-PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred C-CcchHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHH
Confidence 9 678999999999999999999999 7666667776 7999999999999 9999999998874
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=158.65 Aligned_cols=164 Identities=29% Similarity=0.473 Sum_probs=118.2
Q ss_pred CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL 270 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 270 (365)
.+.+.+.|.+|+|.++ ..|..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455666777777777 56666777777777777777776 56777777777777777777776 667777777777777
Q ss_pred ECCCCcCCC-CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705 271 ELSDNKLSG-LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349 (365)
Q Consensus 271 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~ 349 (365)
|+..|++.. ..|..|-.++.|+.|+|++|.+ +.+|..++++++|+.|.+.+|.+- .+|..++.+. .|++|++++|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt-~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT-RLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH-HHHHHhcccce
Confidence 777777653 3566676777777777777777 566667777777777777777777 7777777777 57777777777
Q ss_pred ccccCChhhhcC
Q 045705 350 IVGEIPLELRKH 361 (365)
Q Consensus 350 l~~~~p~~l~~l 361 (365)
++ .+|.+++++
T Consensus 185 l~-vlppel~~l 195 (264)
T KOG0617|consen 185 LT-VLPPELANL 195 (264)
T ss_pred ee-ecChhhhhh
Confidence 77 677766655
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=4.6e-22 Score=176.26 Aligned_cols=207 Identities=31% Similarity=0.373 Sum_probs=145.3
Q ss_pred cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
..++.++.|+|++....+.......+..++++.|.+. ..++.++.+..|+.++..+|+++ ..|.++..+.++..+++.
T Consensus 91 ~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 91 EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcc
Confidence 3466677777777444433333334555666667766 56666777777777777777777 666677777777777777
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 305 (365)
+|.+....|+.+. ++.|++||...|-+. .+|..++.+.+|.-|++.+|++. ..| .|.+++.|.+|+++.|++....
T Consensus 169 ~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 169 GNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred ccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhH
Confidence 7777744444444 777777877777776 67777777888888888888877 344 6777778888888888774333
Q ss_pred hhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705 306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH 361 (365)
Q Consensus 306 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l 361 (365)
.+...++.++..|||.+|+++ +.|..+..+. +|..||+|+|.++ ..|.+++++
T Consensus 245 ae~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred HHHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc
Confidence 344457778888888888887 7777777776 6888888888888 677777776
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=5.1e-21 Score=151.32 Aligned_cols=176 Identities=32% Similarity=0.465 Sum_probs=143.8
Q ss_pred cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 249 (365)
..+.+.|++|+++ .+|..++.+.+|+.|++++|+|+ .+|.+++.+++|+.|++.-|.+. ..|.+|+.++.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3455677777777 46667888899999999999998 78888999999999999999987 889999999999999999
Q ss_pred cCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCC
Q 045705 250 SNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS 328 (365)
Q Consensus 250 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 328 (365)
.|.+. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+ -..|..++.+..|++|++++|+++ .
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee-e
Confidence 99886 356888888999999999999987 6788899999999999999988 456888899999999999999999 8
Q ss_pred chhHhhhcc--CCCcEEEccCcccc
Q 045705 329 IPLSLTNLT--NSLEVVCLSSNHIV 351 (365)
Q Consensus 329 ~p~~l~~~~--~~L~~L~l~~n~l~ 351 (365)
+|..++.+. .+=+.+.+..|+..
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCC
Confidence 887766543 12234455555443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=5.2e-21 Score=169.62 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=188.1
Q ss_pred cccccccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC
Q 045705 136 KFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN 215 (365)
Q Consensus 136 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~ 215 (365)
..+...+.....+.++++.+|++....|....-.....++.++|++. ++|..+..+.+|+.|++++|.+. ..++.++.
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 33444455556788999999999776665554455667888889988 78889999999999999999999 77888999
Q ss_pred CCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEE
Q 045705 216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY 295 (365)
Q Consensus 216 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 295 (365)
+..++.++..+|+++ ..|.++..+.+|..+++.+|.+....|..+ +|+.|++||...|-+. .+|+.++++.+|..|+
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence 999999999999998 788899999999999999999995555544 5999999999999887 6788999999999999
Q ss_pred eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
+..|++. ..| .|.+|..|.+++++.|.+. .+|....+..+++.+||+++|++. +.|.+++.+++|
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 9999994 445 8999999999999999999 889888855458999999999999 899999988876
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=2.9e-16 Score=165.90 Aligned_cols=220 Identities=18% Similarity=0.188 Sum_probs=119.2
Q ss_pred cccccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCC
Q 045705 138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLT 217 (365)
Q Consensus 138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~ 217 (365)
++..+...+.|+.|+|+++.....+|.......++.++|+.|.....+|..+..+++|+.|++++|.....+|..+ +++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 3344455567888888876554666654444566777777776666778888888888888888765444556544 566
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC------------------------------CCCCCC
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL------------------------------GNLTNL 267 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------------------------------~~l~~L 267 (365)
+|++|++++|.....+|.. ..+|++|++++|.+. .+|..+ ...++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 6777777666433333321 223344444444433 122110 011234
Q ss_pred CEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc--------------------CCCCCCCeEECcCCcCCC
Q 045705 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI--------------------GNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 268 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--------------------~~l~~L~~L~L~~N~l~~ 327 (365)
+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ....+|+.|+|++|.++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~- 859 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE- 859 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-
Confidence 444444444444444445555555555554443222222221 01235666666666666
Q ss_pred CchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 328 SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 328 ~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
.+|..+..++ +|+.|++++|+-...+|..+..+++|
T Consensus 860 ~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 860 EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCC
Confidence 6666666666 57777777743333555555554443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=2.4e-18 Score=152.48 Aligned_cols=219 Identities=24% Similarity=0.235 Sum_probs=163.3
Q ss_pred ccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEe-eCCcCCCccCcCCCCCCCCcEE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRL-GDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~l-s~n~i~~~~~~~~~~l~~L~~L 222 (365)
++....++|..|.|+...+..+... .++.++|+.|+|+.+.|++|.++.+|..|-+ ++|+|+....+.|+++..|+-|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3445667788888865555555443 5677888888888888888888877766654 4488887777778888888888
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-----------------------
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG----------------------- 279 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------- 279 (365)
.+.-|++.-...+.|..+++|..|.+-+|.+.......+..+..++++.+..|.+..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 888888877777788888888888888888874333477777777777776665110
Q ss_pred --------------------------------------CC-CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEEC
Q 045705 280 --------------------------------------LI-PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINL 320 (365)
Q Consensus 280 --------------------------------------~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 320 (365)
+. ...|.++++|++|+|++|+++++-+.+|.+...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 00 013667899999999999998888899999999999999
Q ss_pred cCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 321 SLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 321 ~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
..|++...-...|.++. .|+.|+|.+|+|+...|..|..+.+|
T Consensus 306 ~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred CcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccccee
Confidence 99999844444455555 79999999999998888888777665
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=2.2e-15 Score=159.24 Aligned_cols=212 Identities=23% Similarity=0.239 Sum_probs=139.5
Q ss_pred cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
..|+.|++++|.+............++.++|+.+.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 467777777777643322222223456667766554444453 6667778888887776555777777777888888887
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC--------------------
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF-------------------- 285 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------------- 285 (365)
+|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+.. +|..+
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence 765444566554 6777888888777655454432 3567788888887653 33221
Q ss_pred ----------cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhcc------------------
Q 045705 286 ----------GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT------------------ 337 (365)
Q Consensus 286 ----------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~------------------ 337 (365)
...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .++
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 112478888999888777889999999999999999986444666443 222
Q ss_pred --CCCcEEEccCccccccCChhhhcCCCCC
Q 045705 338 --NSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 338 --~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+|+.|++++|.++ .+|.++..+++|.
T Consensus 844 ~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~ 872 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE-EVPWWIEKFSNLS 872 (1153)
T ss_pred cccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence 24666666667776 6777777777663
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=6.8e-16 Score=153.17 Aligned_cols=87 Identities=26% Similarity=0.304 Sum_probs=61.2
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345 (365)
Q Consensus 266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l 345 (365)
+|+.|++++|.+++ +|.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..++ +|+.|++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhcc-CCCeEEC
Confidence 46666666666663 3322 2457777777777754 3432 246778888888888 7888888887 7999999
Q ss_pred cCccccccCChhhhcCC
Q 045705 346 SSNHIVGEIPLELRKHS 362 (365)
Q Consensus 346 ~~n~l~~~~p~~l~~l~ 362 (365)
++|++++..|..+.++.
T Consensus 453 s~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 453 EGNPLSERTLQALREIT 469 (788)
T ss_pred CCCCCCchHHHHHHHHh
Confidence 99999988888775543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=8.1e-16 Score=153.30 Aligned_cols=189 Identities=24% Similarity=0.359 Sum_probs=114.5
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.|+.|++++|.+. .+|.... ..++.++|+.|++. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP-DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccc-cCChhhh-ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 4666666666654 2333221 23455666666665 3444443 35666666666666 3444332 3566666666
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.++ .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|
T Consensus 293 N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 293 NSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLP 362 (754)
T ss_pred Cccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCC
Confidence 6665 3443332 35666666666666 334332 2567788888887775 454443 57888888888875 345
Q ss_pred hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
..+. +.|+.|+|++|.++ .+|..+.. +|+.|++++|+++ .+|..+..
T Consensus 363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~~---sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 363 ETLP--PTITTLDVSRNALT-NLPENLPA---ALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred hhhc--CCcCEEECCCCcCC-CCCHhHHH---HHHHHhhccCCcc-cCchhHHH
Confidence 4443 57888888888888 66765532 5788888888887 66665544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=8.6e-18 Score=163.05 Aligned_cols=197 Identities=31% Similarity=0.335 Sum_probs=105.6
Q ss_pred ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
+..|+.+|+|+|.+++. |.+... ..++.+....|.+. .+|..+..+++|+.|++.+|.+. .+|....+++.|++|+
T Consensus 240 p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 33567777777776443 343332 24455666666663 45555555555555555555555 4444455555555555
Q ss_pred cccCcCC-------------------------------------------------CcchhhhcCCCCCCEEEcccCcCC
Q 045705 224 LDSNALS-------------------------------------------------GSILNEIGNLKSLYYLELTSNTLS 254 (365)
Q Consensus 224 Ls~n~l~-------------------------------------------------~~~~~~l~~l~~L~~L~L~~n~l~ 254 (365)
|..|.+. ...-..+.+..+|+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 5555554 333333344445555555555554
Q ss_pred CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCC-chhHh
Q 045705 255 GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS-IPLSL 333 (365)
Q Consensus 255 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l 333 (365)
......+.++..|++|+||+|+++ .+|..+..+..|++|...+|.+ ...| .+..++.|+.+|++.|+++.. +|...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333334444445555555555554 2344444455555555555554 2334 566777788888888887743 23222
Q ss_pred hhccCCCcEEEccCcc
Q 045705 334 TNLTNSLEVVCLSSNH 349 (365)
Q Consensus 334 ~~~~~~L~~L~l~~n~ 349 (365)
.. +.|++||++||.
T Consensus 474 -p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 -PS-PNLKYLDLSGNT 487 (1081)
T ss_pred -CC-cccceeeccCCc
Confidence 11 368888888886
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=4.3e-16 Score=155.24 Aligned_cols=186 Identities=20% Similarity=0.346 Sum_probs=94.1
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.++.|++++|.+.. +|.... ..++.++++.|+++. +|..+. .+|+.|++++|.+. .+|..+. .+|++|++++
T Consensus 200 ~L~~L~Ls~N~Lts-LP~~l~-~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKS-LPENLQ-GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCc-CChhhc-cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 45566666666543 333222 244555666665552 343332 34566666666665 3444332 3566666666
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++. +|..+. ++|+.|++++|.++. +|
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LP 341 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CC
Confidence 6665 3444432 35666666666655 2333221 345566666666653 232221 456666666666543 33
Q ss_pred hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh
Q 045705 307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE 357 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~ 357 (365)
..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++ .+|..
T Consensus 342 ~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 342 ASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred hhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHh
Confidence 3332 45666666666665 4554331 24666666666665 44443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=1.1e-16 Score=146.77 Aligned_cols=211 Identities=22% Similarity=0.227 Sum_probs=145.9
Q ss_pred cccccceeeeccCCCCCCC--c----chhhh-ccccccceecccccccccchhhhhCCCC---CcEEEeeCCcCCC----
Q 045705 142 VMFSMLFHVLDFPHTAYSD--S----MEEAH-VTWPTWLLYLDINAISGSILDEIRSLKS---LFNLRLGDNTLSG---- 207 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~--~----~~~~~-~~~~~~~l~L~~n~l~~~~~~~~~~l~~---L~~L~ls~n~i~~---- 207 (365)
+...+.++.++++++.+.+ . ++..+ ....++.++++.|.+....+..+..+.+ |+.|++++|.+.+
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 3445568889999887752 1 11111 1235667788888887666666666555 9999999998873
Q ss_pred ccCcCCCCC-CCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCC
Q 045705 208 SIPLSLGNL-TNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLS 278 (365)
Q Consensus 208 ~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 278 (365)
.+...+..+ ++|++|++++|.+++. ++..+..+.+|++|++++|.+.+. ++..+...++|+.|++++|.+.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 233345566 7899999999988742 344566778899999999988742 2334455678999999999887
Q ss_pred CC----CCccCcCCCccceEEeeccccCCcchhhcC-----CCCCCCeEECcCCcCCC----CchhHhhhccCCCcEEEc
Q 045705 279 GL----IPPSFGNLTNLTTLYVYKNSIFGSILDEIG-----NLKSLSNINLSLNKLNG----SIPLSLTNLTNSLEVVCL 345 (365)
Q Consensus 279 ~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~----~~p~~l~~~~~~L~~L~l 345 (365)
+. +...+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+++ .+...+...+ +|+.+++
T Consensus 207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-~L~~l~l 285 (319)
T cd00116 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDL 285 (319)
T ss_pred hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-CccEEEC
Confidence 44 234556778899999999988763332221 24789999999999873 2334444554 7999999
Q ss_pred cCcccccc
Q 045705 346 SSNHIVGE 353 (365)
Q Consensus 346 ~~n~l~~~ 353 (365)
++|.++..
T Consensus 286 ~~N~l~~~ 293 (319)
T cd00116 286 RGNKFGEE 293 (319)
T ss_pred CCCCCcHH
Confidence 99999854
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=1e-17 Score=148.51 Aligned_cols=209 Identities=23% Similarity=0.210 Sum_probs=159.8
Q ss_pred cccccceeeeccCCCCCCCcchhhhccc--cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTW--PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
+...+.|++||||+|+|+...|+.+.+. ..+++..++|+|+...-+.|+++..|+.|.+.-|.+.-+..+.|..+++|
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 4556689999999999999999888765 34556666799987777788888888888887777776667777777777
Q ss_pred cEEEcccCcCCCcchhhhcCCCCCCEEEcccCc-----------------------------------------------
Q 045705 220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNT----------------------------------------------- 252 (365)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~----------------------------------------------- 252 (365)
..|.+.+|.+..+.-..|..+..++.+.+..|.
T Consensus 167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 777777777663333355666666655554442
Q ss_pred --------------CCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCe
Q 045705 253 --------------LSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSN 317 (365)
Q Consensus 253 --------------l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 317 (365)
..+..| ..|..+++|++|++++|+++.+-+.+|.++..++.|.|..|++...-...|.++..|+.
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 111111 23567889999999999999888899999999999999999997776788889999999
Q ss_pred EECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 318 INLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 318 L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
|+|.+|+|+...|.+|..+. +|.+|++-.|++-
T Consensus 327 L~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFN 359 (498)
T ss_pred eeecCCeeEEEecccccccc-eeeeeehccCccc
Confidence 99999999977777777776 7999999888764
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=7.1e-15 Score=146.01 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=45.7
Q ss_pred ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+|+.|++++|.+.. +|.. .++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..++++++|.
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence 56667777776653 3322 246778888888887 56643 235778888888888 7888888887763
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=4.1e-17 Score=158.38 Aligned_cols=212 Identities=27% Similarity=0.333 Sum_probs=145.7
Q ss_pred ccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
...+.++.|+.++|.+. .....+....++.+++++|+++. +|+++..+.+|+.+++.+|+++ .+|..+....+|+.|
T Consensus 216 ~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred ecCcchheeeeccCcce-eeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 44456888888888886 44444555677888999999985 5699999999999999999997 788888888999999
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC--------------------------CCCCCCEEECCCCc
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG--------------------------NLTNLVVLELSDNK 276 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------~l~~L~~L~L~~n~ 276 (365)
++..|.+. .+|....++.+|++|+|..|.+. ..|+.+. .+..|+.|.+.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 99999998 67778888999999999999887 3343221 11234555555555
Q ss_pred CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705 277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 277 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~ 356 (365)
++...-+.+.+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..+. .|++|...+|++. ..|
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-~L~tL~ahsN~l~-~fP- 446 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-RLHTLRAHSNQLL-SFP- 446 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-hhHHHhhcCCcee-ech-
Confidence 55544445555666666666666664444455566666666666666666 5555555554 3555555555555 444
Q ss_pred hhhcCCC
Q 045705 357 ELRKHSS 363 (365)
Q Consensus 357 ~l~~l~~ 363 (365)
.+..++.
T Consensus 447 e~~~l~q 453 (1081)
T KOG0618|consen 447 ELAQLPQ 453 (1081)
T ss_pred hhhhcCc
Confidence 4444443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=2.7e-16 Score=144.19 Aligned_cols=210 Identities=23% Similarity=0.281 Sum_probs=151.7
Q ss_pred ccccccceeeeccCCCCCCCcchhhhccc----cccceecccccccc----cchhhhhCC-CCCcEEEeeCCcCCCc---
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVTW----PTWLLYLDINAISG----SILDEIRSL-KSLFNLRLGDNTLSGS--- 208 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~----~~~~l~L~~n~l~~----~~~~~~~~l-~~L~~L~ls~n~i~~~--- 208 (365)
.+...+.|+.|++++|.+.+..+..+... .++.++++.|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 34446689999999999976555443322 26778888888874 233455666 8999999999998842
Q ss_pred -cCcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCC
Q 045705 209 -IPLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSG 279 (365)
Q Consensus 209 -~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 279 (365)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 334566778999999999998742 344566678999999999988743 23446678899999999999875
Q ss_pred CCCccCc-----CCCccceEEeeccccCC----cchhhcCCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEcc
Q 045705 280 LIPPSFG-----NLTNLTTLYVYKNSIFG----SILDEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLS 346 (365)
Q Consensus 280 ~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~ 346 (365)
.....+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +...+......|+.+++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 3222221 24789999999999863 2345566778999999999999954 444444442479999998
Q ss_pred Cccc
Q 045705 347 SNHI 350 (365)
Q Consensus 347 ~n~l 350 (365)
+|++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 8864
No 25
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=9.4e-15 Score=135.99 Aligned_cols=133 Identities=17% Similarity=0.292 Sum_probs=121.9
Q ss_pred hhhcCCccchhc---c---cc--ccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceec
Q 045705 4 AELNDLDEVTRL---E---GF--QTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVL 75 (365)
Q Consensus 4 ~~~~~~~~~~~~---~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~ 75 (365)
.+|+|+++++|. + .+ .||+||++++.++|...++++..-.|.+++|++++|.+++++++.++++.- +..++
T Consensus 499 fqF~Nyrntkk~i~kk~~~e~~~~~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Pl 577 (754)
T KOG1980|consen 499 FQFQNYRNTKKRILKKEDNEAEAIPGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPL 577 (754)
T ss_pred HhhhhhhhHHHHhhhhcccccccCCCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccc
Confidence 479999999875 1 12 489999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCceEEeeccccccccceeeeecccccccccccccCccccceeeeeccCCCCCCCccccc
Q 045705 76 KSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKF 137 (365)
Q Consensus 76 ~~~~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~ 137 (365)
++..+++++||.|||...|+|+.++.+.++++.++.|+.+..++++++||..+.....+++-
T Consensus 578 kske~livq~G~Rrf~i~PlfSs~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~ 639 (754)
T KOG1980|consen 578 KSKEELIVQCGFRRFDINPLFSSHTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKK 639 (754)
T ss_pred cccceeEEEeccceEEeccccccCCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEe
Confidence 99999999999999999999998888899999999999999999999999888777766653
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=1.6e-15 Score=140.51 Aligned_cols=178 Identities=29% Similarity=0.433 Sum_probs=138.2
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
...+|+.|.+. .+|..+..+..|+.+.+.+|.+. .+|.++.++..|+.|||+.|+++ ..|..++.++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34677777776 57777777777888888888887 77778888888888888888887 6777776664 788888888
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL 331 (365)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 331 (365)
+++ .+|..++...+|..||.+.|.+. .+|..++++.+|+.|.+..|.+.. +|..+.. -.|..||++.|+++ .+|.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecch
Confidence 887 77888887788888888888887 457778888888888888888744 4555553 46788888888888 8888
Q ss_pred HhhhccCCCcEEEccCccccccCChhhhc
Q 045705 332 SLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 332 ~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
.|..+. .|++|-|.+|+++ ..|..++.
T Consensus 229 ~fr~m~-~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 229 DFRKMR-HLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred hhhhhh-hheeeeeccCCCC-CChHHHHh
Confidence 888887 7888888888888 66666554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=2.8e-13 Score=128.03 Aligned_cols=199 Identities=35% Similarity=0.435 Sum_probs=139.9
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCC-CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLK-SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 228 (365)
.++++.|.+............+..+++..|.++. ++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4666666664444333333345667777777773 444455553 7888888888888 555567788888888888888
Q ss_pred CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhh
Q 045705 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308 (365)
Q Consensus 229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 308 (365)
++ .+|......+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++.. .+..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence 87 56665557788888888888888 66665555666888888888544 345667777888888888887743 2566
Q ss_pred cCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh
Q 045705 309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE 357 (365)
Q Consensus 309 l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~ 357 (365)
+..++.++.|++++|.++ .++. +.... +++.|++++|.++...|..
T Consensus 251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~-~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS-SISS-LGSLT-NLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hccccccceecccccccc-cccc-ccccC-ccCEEeccCccccccchhh
Confidence 777778888888888888 5554 56665 6888888888887555443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=1.9e-14 Score=133.50 Aligned_cols=165 Identities=35% Similarity=0.498 Sum_probs=147.7
Q ss_pred CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL 270 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 270 (365)
.+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++.+..|.+||++.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455667899999999 88888888889999999999998 89999999999999999999999 7777776665 8999
Q ss_pred ECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350 (365)
Q Consensus 271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l 350 (365)
-+++|+++ .+|..++.+.+|..|+.+.|.+ ..+|..++.+.+|+.|.+..|++. .+|..+..++ |..||++.|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeeecccCce
Confidence 99999998 6788888899999999999999 466788899999999999999999 8888888776 99999999999
Q ss_pred cccCChhhhcCCCCC
Q 045705 351 VGEIPLELRKHSSLV 365 (365)
Q Consensus 351 ~~~~p~~l~~l~~L~ 365 (365)
+ .+|..|.+|+.|.
T Consensus 224 s-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQ 237 (722)
T ss_pred e-ecchhhhhhhhhe
Confidence 9 9999999998873
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.28 E-value=9.2e-12 Score=123.54 Aligned_cols=113 Identities=35% Similarity=0.479 Sum_probs=96.6
Q ss_pred CCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705 243 LYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL 322 (365)
Q Consensus 243 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 322 (365)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888999999888888888999999999999999888888888999999999999999888888899999999999999
Q ss_pred CcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 323 NKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 323 N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
|.+++.+|..+.....++..+++.+|......|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999989998887654467788888887554444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=8.1e-12 Score=118.05 Aligned_cols=180 Identities=37% Similarity=0.443 Sum_probs=148.9
Q ss_pred cceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
..++.|++.+|.+....+...... .++.++++.|++. .+|..+..+++|+.|++++|.++ .+|......++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 468999999999976655544442 7889999999998 45567889999999999999999 66655557899999999
Q ss_pred ccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304 (365)
Q Consensus 225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 304 (365)
++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..++.++++++|++++|.++..
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc
Confidence 999998 67777667777999999999755 567778889999999999998874 367788899999999999999665
Q ss_pred chhhcCCCCCCCeEECcCCcCCCCchhH
Q 045705 305 ILDEIGNLKSLSNINLSLNKLNGSIPLS 332 (365)
Q Consensus 305 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~ 332 (365)
.. +....+++.|++++|.++...|..
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cc--ccccCccCEEeccCccccccchhh
Confidence 44 888999999999999998554433
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=5.6e-12 Score=103.67 Aligned_cols=102 Identities=29% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC-cCCCccceEEeeccccCCcc-hhhcCCCCCCCe
Q 045705 240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF-GNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSN 317 (365)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~ 317 (365)
+.+|+.|++++|.++. ++ .+..+++|++|++++|+++.. .+.+ ..+++|++|++++|+|.+.. -..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 3444444444444442 21 233444455555555555432 1112 23445555555555543311 133444555556
Q ss_pred EECcCCcCCCCc---hhHhhhccCCCcEEEc
Q 045705 318 INLSLNKLNGSI---PLSLTNLTNSLEVVCL 345 (365)
Q Consensus 318 L~L~~N~l~~~~---p~~l~~~~~~L~~L~l 345 (365)
|+|.+|+++..- ...+..+| +|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLP-SLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-T-T-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcC-hhheeCC
Confidence 666666555221 12233444 4665543
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.21 E-value=3.1e-11 Score=119.78 Aligned_cols=110 Identities=35% Similarity=0.520 Sum_probs=91.3
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 298 (365)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccCCcchhhcCCC-CCCCeEECcCCcCCCC
Q 045705 299 NSIFGSILDEIGNL-KSLSNINLSLNKLNGS 328 (365)
Q Consensus 299 n~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~ 328 (365)
|.+.+.+|..+... .++..+++.+|.....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 88888888777653 4667788888875533
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=7.5e-12 Score=102.91 Aligned_cols=126 Identities=32% Similarity=0.355 Sum_probs=46.6
Q ss_pred CCCCCcEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC-CCCCCCC
Q 045705 191 SLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLV 268 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 268 (365)
+..+++.|+|.+|.|+.+ . .++ .+.+|+.|++++|.|+. + +.+..++.|++|++++|+++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 344678888888888743 2 344 46778888888888874 2 357778888888888888873 43333 3577888
Q ss_pred EEECCCCcCCCCC-CccCcCCCccceEEeeccccCCcc---hhhcCCCCCCCeEECc
Q 045705 269 VLELSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSI---LDEIGNLKSLSNINLS 321 (365)
Q Consensus 269 ~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~ 321 (365)
+|++++|++.... -..++.+++|+.|++.+|.+.... ...+..+++|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888888886541 245567788888888888876432 2345667888887743
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=1.5e-12 Score=112.28 Aligned_cols=131 Identities=28% Similarity=0.352 Sum_probs=95.4
Q ss_pred CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL 270 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 270 (365)
..+.|+.+|||+|.|+ .+..+..-+|+++.|++|+|.|.. .+.+..+++|+.|||++|.++ .+...-..+.++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3456788888888887 566677777888888888888863 334777888888888888877 444444456778888
Q ss_pred ECCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCC
Q 045705 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 327 (365)
.|++|.+... +.++++-+|..||+++|+|.... ...+++++.|+++.|.+|++.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888887643 56667777888888888875421 3567778888888888888873
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=6.2e-12 Score=108.58 Aligned_cols=131 Identities=28% Similarity=0.326 Sum_probs=107.4
Q ss_pred CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 294 (365)
..+.|+++|||+|.|+ .+..+..-.|.++.|++++|.+. .+. .+..+++|+.||||+|.++. +...-.++-++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 3467999999999998 67778888999999999999998 333 38889999999999999984 34445578899999
Q ss_pred EeeccccCCcchhhcCCCCCCCeEECcCCcCCCC-chhHhhhccCCCcEEEccCccccc
Q 045705 295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS-IPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
.|+.|.+.+. ..+..+-+|..||+++|+|... --..++++| -|+.+.|.+|++.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence 9999998433 5667788899999999999731 234678888 69999999999984
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=7.9e-12 Score=109.96 Aligned_cols=199 Identities=16% Similarity=0.192 Sum_probs=97.4
Q ss_pred cccccccceeeeccCCCCCCCcchhhhcc-----ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCC
Q 045705 140 QSVMFSMLFHVLDFPHTAYSDSMEEAHVT-----WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG 214 (365)
Q Consensus 140 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 214 (365)
..+..++.|+++|||+|.|....+..+.. ..++.++|.+|++.......++. .|..|. .....+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~ 154 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAA 154 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccC
Confidence 33444447999999999987655543321 24455666666654322222111 000000 000112
Q ss_pred CCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCC----CC
Q 045705 215 NLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGL----IP 282 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~ 282 (365)
.-++|+++....|.+... +...|...+.|+.+.++.|.+... +...+..+++|++|||.+|.++.. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 234555555555555421 223344455566666666655411 112345556666666666665533 22
Q ss_pred ccCcCCCccceEEeeccccCCcchhh----c-CCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEccCccc
Q 045705 283 PSFGNLTNLTTLYVYKNSIFGSILDE----I-GNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSSNHI 350 (365)
Q Consensus 283 ~~l~~l~~L~~L~L~~n~l~~~~~~~----l-~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~~n~l 350 (365)
..+..++.|+.|++++|.+......+ + ...+.|+.|.+.+|.++.. +...+...+ .|..|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhcCCcccc
Confidence 34445556666666666655432222 2 2345666666666666531 122233333 566666666666
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=2.2e-11 Score=107.22 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=144.0
Q ss_pred cceeeeccCCCCCCCcchhhhccc-----cccceecccccccc----cchh-------hhhCCCCCcEEEeeCCcCCCcc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTW-----PTWLLYLDINAISG----SILD-------EIRSLKSLFNLRLGDNTLSGSI 209 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~-----~~~~l~L~~n~l~~----~~~~-------~~~~l~~L~~L~ls~n~i~~~~ 209 (365)
..++.++||+|.+........... .++..+++ +-++| .+|. ++..+++|++||||+|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 368899999999965444433322 12222222 12222 3343 3345679999999999987544
Q ss_pred CcC----CCCCCCCcEEEcccCcCCCcchhh-------------hcCCCCCCEEEcccCcCCCCC----cccCCCCCCCC
Q 045705 210 PLS----LGNLTNLATLYLDSNALSGSILNE-------------IGNLKSLYYLELTSNTLSGSI----PLPLGNLTNLV 268 (365)
Q Consensus 210 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~ 268 (365)
+.. +..+..|++|.|.+|.+....... ...-+.|+++...+|++.... ...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 456789999999999986322222 234578999999999987322 23466778999
Q ss_pred EEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhH----hhhc
Q 045705 269 VLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLS----LTNL 336 (365)
Q Consensus 269 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~----l~~~ 336 (365)
.+.++.|.|... ....|..+++|+.|||++|.++.. +...+..+++|+.|++++|.+...-..+ +...
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 999999988633 234677899999999999988653 3467788899999999999998644333 3333
Q ss_pred cCCCcEEEccCccccc
Q 045705 337 TNSLEVVCLSSNHIVG 352 (365)
Q Consensus 337 ~~~L~~L~l~~n~l~~ 352 (365)
.++|++|++.+|.++.
T Consensus 269 ~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 269 APSLEVLELAGNEITR 284 (382)
T ss_pred CCCCceeccCcchhHH
Confidence 3479999999999983
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.1e-11 Score=106.47 Aligned_cols=219 Identities=23% Similarity=0.140 Sum_probs=144.7
Q ss_pred CccccccccccccccceeeeccCCCCCCCcchh--hhccccccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCC
Q 045705 132 SCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEE--AHVTWPTWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSG 207 (365)
Q Consensus 132 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~~~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~ 207 (365)
++.+..+..--+....|+.+.|.+......... .......+.++|+.|-+..- +.....++++|+.|+++.|++.-
T Consensus 107 ~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 107 FIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred EecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 344444443334455677777777666433321 11122456678888777642 33455788999999999998873
Q ss_pred ccCcCC-CCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCC-Ccc
Q 045705 208 SIPLSL-GNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLI-PPS 284 (365)
Q Consensus 208 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 284 (365)
...... ..+++|+.|.++.|.++...- .....+|+|+.|+|..|...........-+..|++|||++|.+.... -..
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence 322222 246789999999999874322 33467899999999999643344444555778999999999887442 245
Q ss_pred CcCCCccceEEeeccccCCcc-hhh-----cCCCCCCCeEECcCCcCCCCch--hHhhhccCCCcEEEccCccccc
Q 045705 285 FGNLTNLTTLYVYKNSIFGSI-LDE-----IGNLKSLSNINLSLNKLNGSIP--LSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 285 l~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~N~l~~~~p--~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
.+.++.|+.|+++.+.+.... |+. ....++|++|++..|++. ..+ ..+..++ +|+.|.+..|.++.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~-nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLE-NLKHLRITLNYLNK 340 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccc-hhhhhhcccccccc
Confidence 677889999999999886532 222 345678999999999996 222 3444455 68888888888773
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3.9e-10 Score=76.42 Aligned_cols=61 Identities=39% Similarity=0.518 Sum_probs=42.2
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 253 (365)
++|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777765556677777777777777777666666677777777777777654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=7.8e-10 Score=74.93 Aligned_cols=59 Identities=42% Similarity=0.548 Sum_probs=30.2
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCc
Q 045705 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK 324 (365)
Q Consensus 266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 324 (365)
+|++|++++|+++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554444455555555555555555544444455555555555555554
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.9e-10 Score=100.98 Aligned_cols=184 Identities=23% Similarity=0.261 Sum_probs=127.9
Q ss_pred ccccceeeeccCCCCCCCcchhhhcc---ccccceecccccccccchhh-hhCCCCCcEEEeeCCcCCCc-cCcCCCCCC
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVT---WPTWLLYLDINAISGSILDE-IRSLKSLFNLRLGDNTLSGS-IPLSLGNLT 217 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~~~l~L~~n~l~~~~~~~-~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~ 217 (365)
..++.++.||||+|-+..-.+-.... ..++.|+|+.|.+....... -..+++|+.|.++.|.++.. +......+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34557889999999776544433222 25677888888876332222 13568899999999998832 222345688
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc--ccCCCCCCCCEEECCCCcCCCCC-Ccc-----CcCCC
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP--LPLGNLTNLVVLELSDNKLSGLI-PPS-----FGNLT 289 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~ 289 (365)
+|+.|+|..|..-........-+..|++|+|++|.+.. .+ ...+.++.|..|+++.|.+..+. |+. ....+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 99999999995333444455567789999999998873 33 35677889999999999887652 222 24568
Q ss_pred ccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCC
Q 045705 290 NLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 290 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 327 (365)
+|+.|++..|++.+.. ...+..+.+|+.|.+..|.++.
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8999999999985431 2445566788888888888863
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=3.2e-10 Score=107.71 Aligned_cols=152 Identities=32% Similarity=0.362 Sum_probs=62.5
Q ss_pred hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCccc-CCCCCCC
Q 045705 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP-LGNLTNL 267 (365)
Q Consensus 189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 267 (365)
+..+.+|++|++++|.|+...+ +..++.|+.|++++|.|+. ...+..+..|+.+++++|.+....+ . ...+.++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEN-DELSELISL 188 (414)
T ss_pred hhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhh-hhhhhccch
Confidence 3344455555555555543322 3334445555555555532 2233334455555555555442211 1 2344444
Q ss_pred CEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCC--CCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKS--LSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345 (365)
Q Consensus 268 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l 345 (365)
+.+.+.+|.+... ..+..+..+..+++..|.+...- .+..+.. |+.+++++|.+. ..+..+..+. .+..|++
T Consensus 189 ~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~-~l~~l~~ 262 (414)
T KOG0531|consen 189 EELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLK-NLPVLDL 262 (414)
T ss_pred HHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccc-cccccch
Confidence 4445554444322 11222222222333333332211 1111111 555555555555 3322233333 4555555
Q ss_pred cCcccc
Q 045705 346 SSNHIV 351 (365)
Q Consensus 346 ~~n~l~ 351 (365)
.+|++.
T Consensus 263 ~~n~~~ 268 (414)
T KOG0531|consen 263 SSNRIS 268 (414)
T ss_pred hhcccc
Confidence 555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.3e-09 Score=103.57 Aligned_cols=169 Identities=31% Similarity=0.320 Sum_probs=123.5
Q ss_pred ceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCc
Q 045705 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252 (365)
Q Consensus 173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 252 (365)
.+.+..|.+.. +-..+..+.+|+.|++.+|.|..+ ...+..+++|++|++++|.|+. -..+..++.|+.|++++|.
T Consensus 76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc--ccchhhccchhhheeccCc
Confidence 34456666653 344467788999999999999844 3337789999999999999975 3446677789999999999
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcCCCCCC-ccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705 253 LSGSIPLPLGNLTNLVVLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL 331 (365)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 331 (365)
+... ..+..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+.
T Consensus 152 i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 152 ISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL 226 (414)
T ss_pred chhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc
Confidence 9832 345568899999999999986533 2 57788999999999988544 3344445566668999998832221
Q ss_pred HhhhccCCCcEEEccCcccc
Q 045705 332 SLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 332 ~l~~~~~~L~~L~l~~n~l~ 351 (365)
...... +|+.+++++|++.
T Consensus 227 ~~~~~~-~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 227 NELVML-HLRELYLSGNRIS 245 (414)
T ss_pred ccchhH-HHHHHhcccCccc
Confidence 111111 3889999999998
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.67 E-value=5.3e-10 Score=107.10 Aligned_cols=127 Identities=31% Similarity=0.275 Sum_probs=76.9
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
+|.+.+.++|.+. ....++.-++.|+.|+|++|+++.. +.+..++.|++|||+.|.++.+.--.-.++ +|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 4666666777665 4555666667777777777777632 256667777777777777764321112222 37777777
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcEEEccCcccc
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
+|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+. .|+.|+|.||++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCccc
Confidence 7776433 34566777777777777766421 11233344 5777777777664
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=3.4e-08 Score=100.84 Aligned_cols=94 Identities=34% Similarity=0.388 Sum_probs=58.7
Q ss_pred ccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCccc
Q 045705 181 ISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP 260 (365)
Q Consensus 181 l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 260 (365)
+.......|..++.|++|||++|.--+.+|..++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.-...+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 33334444566667777777766555566666666667777777777666 66666777777777776666554444555
Q ss_pred CCCCCCCCEEECCCC
Q 045705 261 LGNLTNLVVLELSDN 275 (365)
Q Consensus 261 ~~~l~~L~~L~L~~n 275 (365)
...+++|++|.+..-
T Consensus 638 ~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccEEEeecc
Confidence 555666666666543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.5e-09 Score=104.10 Aligned_cols=130 Identities=28% Similarity=0.317 Sum_probs=103.9
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcc-cCCCCCCCCEEE
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLE 271 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 271 (365)
..|...+.++|.+. ....++.-++.|+.|+|++|++.. .+.+..+++|++|||+.|.+. .+|. ....+ .|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 46788899999998 667788888999999999999974 448899999999999999998 4444 22233 399999
Q ss_pred CCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCCCch
Q 045705 272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIP 330 (365)
Q Consensus 272 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p 330 (365)
+.+|.++.. ..+.++.+|+.||+++|-+.+.- ...+..+..|+.|.|.+|++- .-|
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p 295 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP 295 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence 999999855 56778999999999999886532 234556778999999999997 444
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.1e-08 Score=88.59 Aligned_cols=177 Identities=20% Similarity=0.137 Sum_probs=93.2
Q ss_pred ccceecccccccccc-hhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc-CCCcch-hhhcCCCCCCEEE
Q 045705 171 TWLLYLDINAISGSI-LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA-LSGSIL-NEIGNLKSLYYLE 247 (365)
Q Consensus 171 ~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~ 247 (365)
++.++|+...|+..- ...+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++.... --+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 445556655555322 2334556666666666666666665666666666677766654 331111 1245566666667
Q ss_pred cccCcCCCCCcc-cCCCC-CCCCEEECCCCcCC---CCCCccCcCCCccceEEeeccc-cCCcchhhcCCCCCCCeEECc
Q 045705 248 LTSNTLSGSIPL-PLGNL-TNLVVLELSDNKLS---GLIPPSFGNLTNLTTLYVYKNS-IFGSILDEIGNLKSLSNINLS 321 (365)
Q Consensus 248 L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~ 321 (365)
++.|.+...... .+... .+|+.|+++++.-. ..+..-...+++|.+|||++|. ++.....+|.+++.|++|+++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 766665532211 11111 35666666665321 0111122356677777777653 333334455666777777777
Q ss_pred CCcCCCCchhH---hhhccCCCcEEEccCccc
Q 045705 322 LNKLNGSIPLS---LTNLTNSLEVVCLSSNHI 350 (365)
Q Consensus 322 ~N~l~~~~p~~---l~~~~~~L~~L~l~~n~l 350 (365)
.|.. .+|.. +...| +|.+||+.++--
T Consensus 347 RCY~--i~p~~~~~l~s~p-sl~yLdv~g~vs 375 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKP-SLVYLDVFGCVS 375 (419)
T ss_pred hhcC--CChHHeeeeccCc-ceEEEEeccccC
Confidence 6653 23332 23344 577777766543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=2.6e-07 Score=79.28 Aligned_cols=209 Identities=17% Similarity=0.127 Sum_probs=134.5
Q ss_pred ccceeeeccCCCCCCCcchhhhccccccceeccccc----ccc----c-------chhhhhCCCCCcEEEeeCCcCCCcc
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINA----ISG----S-------ILDEIRSLKSLFNLRLGDNTLSGSI 209 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~----l~~----~-------~~~~~~~l~~L~~L~ls~n~i~~~~ 209 (365)
...+..+|||+|.|...........-....+|..-+ ++| . ...++.+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 446888999999997665554443322222222211 122 2 2344567899999999999988665
Q ss_pred CcC----CCCCCCCcEEEcccCcCCCcchhhh-------------cCCCCCCEEEcccCcCCCCCcc----cCCCCCCCC
Q 045705 210 PLS----LGNLTNLATLYLDSNALSGSILNEI-------------GNLKSLYYLELTSNTLSGSIPL----PLGNLTNLV 268 (365)
Q Consensus 210 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~l-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~ 268 (365)
|.. ++.-..|.+|.+++|.+....-..+ ..-|.|++.....|++...... .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 544 4566789999999998753222222 2457799999999988632111 122335788
Q ss_pred EEECCCCcCCCCCC-----ccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhHhhh----
Q 045705 269 VLELSDNKLSGLIP-----PSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN---- 335 (365)
Q Consensus 269 ~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~---- 335 (365)
++.+..|.|.-... ..+..+.+|+.|+|++|.++-. +..++..++.|+.|.+.+|-++..-...+..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 88898888763311 1234567899999999987543 3356677788899999999888654443332
Q ss_pred --ccCCCcEEEccCccccccC
Q 045705 336 --LTNSLEVVCLSSNHIVGEI 354 (365)
Q Consensus 336 --~~~~L~~L~l~~n~l~~~~ 354 (365)
.+ +|..|...+|.+.+.+
T Consensus 269 ~~~p-~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 269 KFVP-NLMPLPGDYNERRGGI 288 (388)
T ss_pred hcCC-CccccccchhhhcCce
Confidence 23 6888888888766543
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=1.4e-07 Score=96.29 Aligned_cols=159 Identities=27% Similarity=0.338 Sum_probs=116.2
Q ss_pred CCCCcEEEeeCCc--CCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCE
Q 045705 192 LKSLFNLRLGDNT--LSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV 269 (365)
Q Consensus 192 l~~L~~L~ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 269 (365)
.++|+.|-+..|. +.......|..++.|+.|||++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3579999999886 66555566888999999999998876789999999999999999999998 88999999999999
Q ss_pred EECCCCcCCCCCCccCcCCCccceEEeecccc--CCcchhhcCCCCCCCeEECcCCcC----------------------
Q 045705 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI--FGSILDEIGNLKSLSNINLSLNKL---------------------- 325 (365)
Q Consensus 270 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L~~N~l---------------------- 325 (365)
|++..+.....+|.....+++|++|.+..-.. .......+..+.+|+.+.......
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 99998887666677777799999999866542 122233444455554444322221
Q ss_pred ---CCCchhHhhhccCCCcEEEccCccccc
Q 045705 326 ---NGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 326 ---~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
....+..+..+. +|+.|.+.++.++.
T Consensus 703 ~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLG-NLEELSILDCGISE 731 (889)
T ss_pred ccccceeeccccccc-CcceEEEEcCCCch
Confidence 002233444454 68888888887763
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=1.4e-08 Score=78.08 Aligned_cols=132 Identities=20% Similarity=0.217 Sum_probs=70.4
Q ss_pred CcEEEcccCcCCCcchhh---hcCCCCCCEEEcccCcCCCCCcccCC-CCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705 219 LATLYLDSNALSGSILNE---IGNLKSLYYLELTSNTLSGSIPLPLG-NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 294 (365)
+..++|+.|++- .+++. +.....|+..+|++|.+.. .|..|. ..+.+++|++++|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445556666553 23333 2333445555666666663 333332 3345666666666666 345556666666666
Q ss_pred EeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705 295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~ 356 (365)
+++.|.+. ..|..+..+.++..|+..+|.+. .+|.++..-. ..-..++.++++.+.-|.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~-~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSS-LPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccc-cHHHHHhcCCcccccCcc
Confidence 66666663 33444555666666666666666 5555433221 233334455555554443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=2.5e-08 Score=76.75 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=55.5
Q ss_pred hCCCCCcEEEeeCCcCCCccCcCC-CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCC
Q 045705 190 RSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV 268 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 268 (365)
.....|+..+|++|.+. .+|..| ...+.+++|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 34456666777777777 344443 34456777777777776 56666777777777777777776 4455555566666
Q ss_pred EEECCCCcCC
Q 045705 269 VLELSDNKLS 278 (365)
Q Consensus 269 ~L~L~~n~l~ 278 (365)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 6666666665
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-08 Score=87.76 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=25.3
Q ss_pred CcEEEeeCCcCCC-ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 195 LFNLRLGDNTLSG-SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 195 L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
|++|||+...|+. ..-..+..+.+|+.|.+.++++.+.+...+..-.+|+.|+++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4445555444431 11112233444555555555554444444444445555555443
No 53
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=8e-07 Score=81.75 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=103.6
Q ss_pred hhcCCccchhc------cc-cccccEEEEEEccccHHHHHccCCCCcEEE-eccccCCceeeEEEEEeeccccccceecc
Q 045705 5 ELNDLDEVTRL------EG-FQTGTYLGMEIHDVPFEMVEYFDPCHPVLV-GGIGLGKQNVGYMQARLKQHRWWHKKVLK 76 (365)
Q Consensus 5 ~~~~~~~~~~~------~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~w~~~~~~ 76 (365)
.|+|+++.++. ++ +++|..|+|.++ +|...++++.-..+.++ +|++..|.+..+.++.+.+|.- ++.+++
T Consensus 513 ~f~nyrn~kn~~vk~~~~~~a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~ 590 (769)
T COG5177 513 FFDNYRNAKNLVVKKDNESVAPDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLK 590 (769)
T ss_pred eccchhhhhhheecCCccccCCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCC
Confidence 57888888774 34 677999999999 99999999887776655 9999999999999999999999 999999
Q ss_pred cCCceEEeeccccccccceeeeecc--cccccccccccCccccceeeeeccCCC
Q 045705 77 SRDPIFVSIGWRRIQTVPVYAIEDR--NGRHRMLKYTPEHMHSLAMFWGPLAPP 128 (365)
Q Consensus 77 ~~~p~~~s~gw~~~~~l~~~~l~~~--~~~~~~l~~~p~~~~~~~~~~G~i~~~ 128 (365)
+.++.++++|-||+...|.++.... +..+++.++.++.-..++++.||+...
T Consensus 591 s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg 644 (769)
T COG5177 591 SEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFG 644 (769)
T ss_pred cccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceecc
Confidence 9999999999999999999876433 345678888888888888999987553
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=6e-07 Score=78.08 Aligned_cols=85 Identities=29% Similarity=0.258 Sum_probs=58.3
Q ss_pred cccceecccccccc--cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCC-cchhhhcCCCCCCEE
Q 045705 170 PTWLLYLDINAISG--SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-SILNEIGNLKSLYYL 246 (365)
Q Consensus 170 ~~~~l~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L 246 (365)
..+.++|..|.|+. .+...+.+|+.|++|+++.|.+...+..--....+|++|-|.+..+.- .....+..+|.+++|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 45668888888874 344555788888999999888874433222456688888888877652 233445677888888
Q ss_pred EcccCcCC
Q 045705 247 ELTSNTLS 254 (365)
Q Consensus 247 ~L~~n~l~ 254 (365)
.++.|.+.
T Consensus 152 HmS~N~~r 159 (418)
T KOG2982|consen 152 HMSDNSLR 159 (418)
T ss_pred hhccchhh
Confidence 88888443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=6.6e-06 Score=67.81 Aligned_cols=103 Identities=27% Similarity=0.184 Sum_probs=53.0
Q ss_pred CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC-cccCCCCCCCCEEEC
Q 045705 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI-PLPLGNLTNLVVLEL 272 (365)
Q Consensus 194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 272 (365)
....+||++|.+... +.|..++.|.+|.+.+|.|+.+.|.--.-+++|..|.+.+|.+.... -..+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666666422 23555666666666666666544444444555666666666655111 123444555666665
Q ss_pred CCCcCCCC---CCccCcCCCccceEEeec
Q 045705 273 SDNKLSGL---IPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 273 ~~n~l~~~---~~~~l~~l~~L~~L~L~~ 298 (365)
-+|..... --..+..+++|+.||.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 55554422 112334455555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.5e-05 Score=72.43 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=23.9
Q ss_pred CCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 192 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
+.+++.|++++|.++ .+|. + -.+|++|.+++|.--..+|+.+ ..+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345555555555554 3331 1 1245555555433222334333 134555555555
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.9e-06 Score=74.16 Aligned_cols=184 Identities=19% Similarity=0.145 Sum_probs=128.1
Q ss_pred cccceecccccccccchhh----hhCCCCCcEEEeeCCcCC---Cc-------cCcCCCCCCCCcEEEcccCcCCCcchh
Q 045705 170 PTWLLYLDINAISGSILDE----IRSLKSLFNLRLGDNTLS---GS-------IPLSLGNLTNLATLYLDSNALSGSILN 235 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~----~~~l~~L~~L~ls~n~i~---~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 235 (365)
....++|++|-|......+ +++-.+|+..+++.-... .. +-+++.+||+|+..+||+|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 3456889999987655444 445577888887753221 12 234567899999999999999876665
Q ss_pred h----hcCCCCCCEEEcccCcCCCCCccc-------------CCCCCCCCEEECCCCcCCCCCC----ccCcCCCccceE
Q 045705 236 E----IGNLKSLYYLELTSNTLSGSIPLP-------------LGNLTNLVVLELSDNKLSGLIP----PSFGNLTNLTTL 294 (365)
Q Consensus 236 ~----l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L 294 (365)
. ++.-+.|.+|.+++|.+.-.-... ..+-+.|++.....|++..-.. ..+..-.+|+++
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 4 566788999999999886222112 2245789999999999863311 223333689999
Q ss_pred EeeccccCCcch-----hhcCCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEccCccccccC
Q 045705 295 YVYKNSIFGSIL-----DEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSSNHIVGEI 354 (365)
Q Consensus 295 ~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~~n~l~~~~ 354 (365)
.+..|.|..... ..+..+.+|+.|||++|-++-. +...+...+ .|+.|.+.+|-++..-
T Consensus 191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G 258 (388)
T COG5238 191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEG 258 (388)
T ss_pred EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhcccc
Confidence 999998865411 2334578999999999999843 233455566 5899999999887443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=5.8e-06 Score=51.47 Aligned_cols=36 Identities=42% Similarity=0.637 Sum_probs=15.6
Q ss_pred CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCC
Q 045705 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230 (365)
Q Consensus 194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 230 (365)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=6.8e-06 Score=51.13 Aligned_cols=36 Identities=39% Similarity=0.614 Sum_probs=15.9
Q ss_pred CCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 314 SLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 314 ~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
+|++|++++|+|+ .+|..+..++ +|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~-~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLP-NLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCT-TSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCC-CCCEEEecCCCCC
Confidence 3444444444444 3444444444 3444444444444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=66.49 Aligned_cols=125 Identities=23% Similarity=0.216 Sum_probs=79.0
Q ss_pred cEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705 196 FNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274 (365)
Q Consensus 196 ~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 274 (365)
+.+++.+..+..+ .. ++ ...+...+||++|.+.. -..|..++.|.+|.+.+|+|+..-|.--..+++|++|.+.+
T Consensus 22 ~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccch-hh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4566666655522 11 21 23467778888888752 34567777888888888888855555444566788888888
Q ss_pred CcCCCCC-CccCcCCCccceEEeeccccCCcc---hhhcCCCCCCCeEECcCCc
Q 045705 275 NKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSI---LDEIGNLKSLSNINLSLNK 324 (365)
Q Consensus 275 n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~N~ 324 (365)
|.+.... ...+..+++|+.|.+-+|.+...- .-.+..+++|+.||.+.-.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 8776431 234556777888888777765431 2345667777777776543
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.8e-05 Score=69.06 Aligned_cols=85 Identities=33% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCcEEEeeCCcCCCc--cCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCC
Q 045705 192 LKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLV 268 (365)
Q Consensus 192 l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 268 (365)
++.++.+||.+|.|+.. +...+.++|.|++|++++|++...+-..-..+.+|++|.|.+..+.- .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 35555666666665521 22234455666666666666542221111234455555555554431 1222334455555
Q ss_pred EEECCCCc
Q 045705 269 VLELSDNK 276 (365)
Q Consensus 269 ~L~L~~n~ 276 (365)
+|.+|.|.
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555553
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.88 E-value=3.1e-05 Score=60.73 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=49.7
Q ss_pred hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCC
Q 045705 187 DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266 (365)
Q Consensus 187 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 266 (365)
.+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+..+ +.......|..+++|+.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455556666666653 455455556666666666666654 4434444556665666666654 333233344555666
Q ss_pred CCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL 315 (365)
Q Consensus 267 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 315 (365)
|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666543 333334455554 555555543 2323334445444443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=4.6e-06 Score=83.35 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=54.4
Q ss_pred CCCCcEEEcccCcCCC-cchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccce
Q 045705 216 LTNLATLYLDSNALSG-SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTT 293 (365)
Q Consensus 216 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~ 293 (365)
+|.|++|.+++-.+.. ..-....++++|..||++++.++.. ..++.+++|++|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555544321 1122234455555555555555522 344555555555554433331 11123334555566
Q ss_pred EEeeccccCCcc------hhhcCCCCCCCeEECcCCcCCCCchhHh
Q 045705 294 LYVYKNSIFGSI------LDEIGNLKSLSNINLSLNKLNGSIPLSL 333 (365)
Q Consensus 294 L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~N~l~~~~p~~l 333 (365)
||+|........ .+.-..++.|+.||.|+..+.+.+-+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 665554332211 1122336677777777666665444433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00013 Score=67.85 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccc
Q 045705 214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLT 292 (365)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~ 292 (365)
..+.+++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+ ..+|+.|++++| .+. .+|. +|+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence 34678999999999887 5562 23469999999865444666644 357999999988 444 3443 355
Q ss_pred eEEeeccccC--CcchhhcCC------------------CCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705 293 TLYVYKNSIF--GSILDEIGN------------------LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348 (365)
Q Consensus 293 ~L~L~~n~l~--~~~~~~l~~------------------l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n 348 (365)
.|++..+... +.+|..+.. .++|++|++++|... .+|.. +|.+|+.|+++.|
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK---LPESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc---ccccCcEEEeccc
Confidence 5555554321 122322211 146778888877765 44432 4457888888766
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.7e-05 Score=79.37 Aligned_cols=137 Identities=24% Similarity=0.227 Sum_probs=98.5
Q ss_pred CCCcEEEcccCcCC-Ccchhhh-cCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccce
Q 045705 217 TNLATLYLDSNALS-GSILNEI-GNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293 (365)
Q Consensus 217 ~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 293 (365)
.+|++|++++...- ..=|..+ ..+|+|+.|.+++-.+.. .......++++|..||+|+++++.. ..++.+.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47888888886542 1122333 458999999999876652 2234466789999999999999865 77889999999
Q ss_pred EEeeccccCC-cchhhcCCCCCCCeEECcCCcCCCCc--hh----HhhhccCCCcEEEccCccccccCCh
Q 045705 294 LYVYKNSIFG-SILDEIGNLKSLSNINLSLNKLNGSI--PL----SLTNLTNSLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 294 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~--p~----~l~~~~~~L~~L~l~~n~l~~~~p~ 356 (365)
|.+.+=.+.. ..-..+.++++|+.||+|........ .. .-..+| .|+.||.|+..+.+.+-+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILE 268 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHH
Confidence 9998876643 23356678999999999998776321 11 112355 799999999988765533
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00029 Score=55.08 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=44.0
Q ss_pred cCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCc
Q 045705 211 LSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290 (365)
Q Consensus 211 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 290 (365)
.+|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++.+++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455666666666653 344344445555656666666553 4433334455555566665543 333233345555555
Q ss_pred cceEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSL 322 (365)
Q Consensus 291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 322 (365)
|+.+++..+ +.......|.++ .|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555443 333333444444 555555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=9.1e-05 Score=63.64 Aligned_cols=104 Identities=25% Similarity=0.231 Sum_probs=61.0
Q ss_pred hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC--cCCCcchhhhcCCCCCCEEEcccCcCCCCCcc---cCCC
Q 045705 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN--ALSGSILNEIGNLKSLYYLELTSNTLSGSIPL---PLGN 263 (365)
Q Consensus 189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~ 263 (365)
...+..|+.|++.+..++.. ..+..+++|+.|.++.| .+.+.++.....+++|++|++++|++.. +. .+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 34445666666666666522 23556777888888888 5554444444555777788888777762 22 2344
Q ss_pred CCCCCEEECCCCcCCCCCC---ccCcCCCccceEEe
Q 045705 264 LTNLVVLELSDNKLSGLIP---PSFGNLTNLTTLYV 296 (365)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L 296 (365)
+.+|..|++.+|..+..-. ..|.-+++|++|+-
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 5566777777776654311 23444556655553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.38 E-value=7.5e-05 Score=64.14 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=53.6
Q ss_pred hhhCCCCCcEEEeeCC--cCCCccCcCCCCCCCCcEEEcccCcCCCcchhh---hcCCCCCCEEEcccCcCCCCCc---c
Q 045705 188 EIRSLKSLFNLRLGDN--TLSGSIPLSLGNLTNLATLYLDSNALSGSILNE---IGNLKSLYYLELTSNTLSGSIP---L 259 (365)
Q Consensus 188 ~~~~l~~L~~L~ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~---~ 259 (365)
.+..+++|+.|.++.| ++.+.++-....+++|++|++++|+|.. +.. +..+.+|..|++.+|..+..-. .
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 3455677888888888 5555555555566888888888888752 333 3445567777777776663111 1
Q ss_pred cCCCCCCCCEEECCCC
Q 045705 260 PLGNLTNLVVLELSDN 275 (365)
Q Consensus 260 ~~~~l~~L~~L~L~~n 275 (365)
.|.-+++|++|+-.+.
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 2445667777665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=2.2e-05 Score=67.98 Aligned_cols=100 Identities=30% Similarity=0.263 Sum_probs=57.9
Q ss_pred CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeE
Q 045705 240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNI 318 (365)
Q Consensus 240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 318 (365)
+.+.+.|+..+|.+..+ .....|+.|++|.||-|+|+.. ..|..|++|++|+|..|.|.+.. ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455566666666522 2334566677777777776654 44566677777777777664432 2445667777777
Q ss_pred ECcCCcCCCCchh-----HhhhccCCCcEEE
Q 045705 319 NLSLNKLNGSIPL-----SLTNLTNSLEVVC 344 (365)
Q Consensus 319 ~L~~N~l~~~~p~-----~l~~~~~~L~~L~ 344 (365)
.|..|.-.+.-+. .+..+| +|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLP-NLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence 7777766554332 233344 566664
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=2.8e-05 Score=67.31 Aligned_cols=64 Identities=33% Similarity=0.330 Sum_probs=32.5
Q ss_pred hCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCC
Q 045705 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSG 255 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 255 (365)
..|+.|++|.||-|.|+...| +..|++|++|+|..|.|.+..- .-+.++++|+.|.|..|...+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 445556666666666553322 4455556666666555542111 123455555555555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.59 E-value=0.00093 Score=34.63 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCcEEEccCccccccCChhhhcC
Q 045705 339 SLEVVCLSSNHIVGEIPLELRKH 361 (365)
Q Consensus 339 ~L~~L~l~~n~l~~~~p~~l~~l 361 (365)
+|++||+++|+++ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3778888888888 777776654
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.94 E-value=7.7e-05 Score=71.54 Aligned_cols=161 Identities=24% Similarity=0.216 Sum_probs=90.3
Q ss_pred hCCCCCcEEEeeCCcCCCcc----CcCCCCC-CCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCC----C
Q 045705 190 RSLKSLFNLRLGDNTLSGSI----PLSLGNL-TNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSG----S 256 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~~~----~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~ 256 (365)
.....|+.|++++|.+.+.- ...+... ..+++|++..|.++.. +...+.....++.++++.|.+.. .
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 44566666777776666221 1112222 4566666666666532 33445556667777777776631 1
Q ss_pred CcccCC----CCCCCCEEECCCCcCCCC----CCccCcCCCc-cceEEeeccccCCcc----hhhcCCC-CCCCeEECcC
Q 045705 257 IPLPLG----NLTNLVVLELSDNKLSGL----IPPSFGNLTN-LTTLYVYKNSIFGSI----LDEIGNL-KSLSNINLSL 322 (365)
Q Consensus 257 ~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~ 322 (365)
++..+. ...++++|.+++|.++.. ....+...+. +..|++..|.+.+.. ...+..+ ..++.++++.
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 122222 355677777777776632 1123334444 666777777775431 2334444 5677888888
Q ss_pred CcCCCCc----hhHhhhccCCCcEEEccCcccc
Q 045705 323 NKLNGSI----PLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 323 N~l~~~~----p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
|.++..- ...+...+ .++++.++.|.+.
T Consensus 272 nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT 303 (478)
T ss_pred CCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence 8887543 33344455 6778888888776
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0072 Score=31.22 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=4.5
Q ss_pred cEEEeeCCcCC
Q 045705 196 FNLRLGDNTLS 206 (365)
Q Consensus 196 ~~L~ls~n~i~ 206 (365)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.38 E-value=0.0003 Score=67.57 Aligned_cols=166 Identities=28% Similarity=0.295 Sum_probs=113.9
Q ss_pred CcEEEeeCCcCCCc----cCcCCCCCCCCcEEEcccCcCCCcchhh----hcCC-CCCCEEEcccCcCCCC----CcccC
Q 045705 195 LFNLRLGDNTLSGS----IPLSLGNLTNLATLYLDSNALSGSILNE----IGNL-KSLYYLELTSNTLSGS----IPLPL 261 (365)
Q Consensus 195 L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~~~~~ 261 (365)
+..|.|.+|.+... +...+...+.|+.|++++|.+.+..... +... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777888877743 3344667789999999999997433332 3333 5678889988888743 34456
Q ss_pred CCCCCCCEEECCCCcCCCC----CCccCc----CCCccceEEeeccccCCcc----hhhcCCCCC-CCeEECcCCcCCCC
Q 045705 262 GNLTNLVVLELSDNKLSGL----IPPSFG----NLTNLTTLYVYKNSIFGSI----LDEIGNLKS-LSNINLSLNKLNGS 328 (365)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~N~l~~~ 328 (365)
.....++.++++.|.+... ++..+. ...++++|.+.+|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 6678899999999988422 233333 4778999999999886432 234455555 77799999999854
Q ss_pred c----hhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 329 I----PLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 329 ~----p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
. ...+......++.++++.|.|++.-...+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 2 3333344236799999999999766555543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.90 E-value=0.039 Score=26.45 Aligned_cols=13 Identities=31% Similarity=0.467 Sum_probs=5.1
Q ss_pred CCcEEEccCcccc
Q 045705 339 SLEVVCLSSNHIV 351 (365)
Q Consensus 339 ~L~~L~l~~n~l~ 351 (365)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.32 E-value=0.15 Score=27.35 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=5.9
Q ss_pred CCCeEECcCCcCC
Q 045705 314 SLSNINLSLNKLN 326 (365)
Q Consensus 314 ~L~~L~L~~N~l~ 326 (365)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.32 E-value=0.15 Score=27.35 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=5.9
Q ss_pred CCCeEECcCCcCC
Q 045705 314 SLSNINLSLNKLN 326 (365)
Q Consensus 314 ~L~~L~L~~N~l~ 326 (365)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.06 E-value=0.0037 Score=53.07 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=44.3
Q ss_pred hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCC
Q 045705 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV 268 (365)
Q Consensus 189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 268 (365)
+......+.||++.|++. .....|.-++.+..|+++.|++. ..|..++.+..++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344445555555555554 33334444455555555555554 44555555555555555555554 4455555555555
Q ss_pred EEECCCCcC
Q 045705 269 VLELSDNKL 277 (365)
Q Consensus 269 ~L~L~~n~l 277 (365)
.+++.+|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555543
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.98 E-value=0.036 Score=46.23 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=40.7
Q ss_pred CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCc-CCCccceEEeecc-ccCCcchhhcCCCCCCCeE
Q 045705 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFG-NLTNLTTLYVYKN-SIFGSILDEIGNLKSLSNI 318 (365)
Q Consensus 242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 318 (365)
.++.++-++..|..+--+.+..++.++.|.+.+|.--+. -.+.++ -.++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455566666655544334455555555555555543211 000000 2355666666655 3444444555556666666
Q ss_pred ECcCCc
Q 045705 319 NLSLNK 324 (365)
Q Consensus 319 ~L~~N~ 324 (365)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655433
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.64 E-value=0.093 Score=50.68 Aligned_cols=132 Identities=23% Similarity=0.121 Sum_probs=74.3
Q ss_pred CCCCCcEEEcccCcCCCc--chhhhcCCCCCCEEEcccC-cCCCCCc----ccCCCCCCCCEEECCCCc-CCCCCCccCc
Q 045705 215 NLTNLATLYLDSNALSGS--ILNEIGNLKSLYYLELTSN-TLSGSIP----LPLGNLTNLVVLELSDNK-LSGLIPPSFG 286 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 286 (365)
.++.|+.|.+..+.-... .-.....++.|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367888888887743222 2344567788888888863 2111111 123345778888888777 4433222222
Q ss_pred -CCCccceEEeeccc-cCCcch-hhcCCCCCCCeEECcCCcCCC-C-chhHhhhccCCCcEEEccC
Q 045705 287 -NLTNLTTLYVYKNS-IFGSIL-DEIGNLKSLSNINLSLNKLNG-S-IPLSLTNLTNSLEVVCLSS 347 (365)
Q Consensus 287 -~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~N~l~~-~-~p~~l~~~~~~L~~L~l~~ 347 (365)
.+++|+.|.+.++. +++..- .....++.|++|+++++.... . +......++ .|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhhhhh
Confidence 26778888877766 454332 333557778888888776542 1 223333333 455554433
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0028 Score=53.76 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=56.8
Q ss_pred hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705 236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL 315 (365)
Q Consensus 236 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 315 (365)
.+......+.||++.|++- .....|.-++.+..|+++.|.+. ..|..++.+..+..+++..|.. ...|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence 3444556666777777665 33444555566677777777666 4566666666667777666665 3446667777777
Q ss_pred CeEECcCCcCC
Q 045705 316 SNINLSLNKLN 326 (365)
Q Consensus 316 ~~L~L~~N~l~ 326 (365)
+.+++.+|.++
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777777765
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.87 E-value=0.33 Score=25.91 Aligned_cols=13 Identities=54% Similarity=0.603 Sum_probs=6.1
Q ss_pred CCcEEEcccCcCC
Q 045705 218 NLATLYLDSNALS 230 (365)
Q Consensus 218 ~L~~L~Ls~n~l~ 230 (365)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.87 E-value=0.33 Score=25.91 Aligned_cols=13 Identities=54% Similarity=0.603 Sum_probs=6.1
Q ss_pred CCcEEEcccCcCC
Q 045705 218 NLATLYLDSNALS 230 (365)
Q Consensus 218 ~L~~L~Ls~n~l~ 230 (365)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.65 E-value=0.12 Score=49.84 Aligned_cols=174 Identities=20% Similarity=0.083 Sum_probs=101.4
Q ss_pred hCCCCCcEEEeeCCcCCCc--cCcCCCCCCCCcEEEcccC-cCCCcch----hhhcCCCCCCEEEcccCc-CCCCCcccC
Q 045705 190 RSLKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYLDSN-ALSGSIL----NEIGNLKSLYYLELTSNT-LSGSIPLPL 261 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~ 261 (365)
..++.|+.|.+..+.-... .-.....+++|++|+++++ ......+ .....+.+|+.|+++.+. ++...-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3468899999988743323 2344567899999999974 2211112 234456889999999988 553332333
Q ss_pred C-CCCCCCEEECCCCc-CCCCC-CccCcCCCccceEEeeccccC-Cc-chhhcCCCCCCCeEECcCCc----CCC-----
Q 045705 262 G-NLTNLVVLELSDNK-LSGLI-PPSFGNLTNLTTLYVYKNSIF-GS-ILDEIGNLKSLSNINLSLNK----LNG----- 327 (365)
Q Consensus 262 ~-~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~L~~N~----l~~----- 327 (365)
. .+++|++|.+.++. ++... ......++.|++|+++++... +. .......+++|+.|.+.... ++.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 3 37899999988777 45332 223346788999999988653 21 22333446666555543332 211
Q ss_pred -------Cchh-HhhhccCCCcEEEccCccccccC-ChhhhcCCCC
Q 045705 328 -------SIPL-SLTNLTNSLEVVCLSSNHIVGEI-PLELRKHSSL 364 (365)
Q Consensus 328 -------~~p~-~l~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L 364 (365)
.... .+..++ .++.+.+..+..+... -..+..|+.|
T Consensus 345 ~~~~~~d~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCP-KLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhcCC-CcchhhhhhhhccCcchHHHhcCCccc
Confidence 1111 122333 6778888877744222 2455555544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.05 E-value=0.14 Score=26.84 Aligned_cols=20 Identities=40% Similarity=0.411 Sum_probs=9.8
Q ss_pred CCcEEEccCccccccCChhh
Q 045705 339 SLEVVCLSSNHIVGEIPLEL 358 (365)
Q Consensus 339 ~L~~L~l~~n~l~~~~p~~l 358 (365)
+|++|++++|+|++.....+
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHh
Confidence 45666666666655444433
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.52 E-value=0.19 Score=42.08 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=64.1
Q ss_pred CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcC-CCCCCCeEECcCCc-CCCCchhHhhhccCCC
Q 045705 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIG-NLKSLSNINLSLNK-LNGSIPLSLTNLTNSL 340 (365)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~N~-l~~~~p~~l~~~~~~L 340 (365)
-..++.+|.++..|..+.-+.+.+++.++.|.+.+|.--+. -.+-++ -.++|+.|+|++|. ||..--..+..++ +|
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nL 178 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-NL 178 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-hh
Confidence 34588999999999877777888889999999988864332 122232 35799999999885 7876677888887 79
Q ss_pred cEEEccCcc
Q 045705 341 EVVCLSSNH 349 (365)
Q Consensus 341 ~~L~l~~n~ 349 (365)
+.|.+.+=+
T Consensus 179 r~L~l~~l~ 187 (221)
T KOG3864|consen 179 RRLHLYDLP 187 (221)
T ss_pred HHHHhcCch
Confidence 988887643
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.33 E-value=0.46 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=13.3
Q ss_pred CCcEEEccCccccccCCh
Q 045705 339 SLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 339 ~L~~L~l~~n~l~~~~p~ 356 (365)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5788888888888 6775
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.12 E-value=0.72 Score=42.93 Aligned_cols=133 Identities=18% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCCcEEEcccCcC-CCcchhhh-cCCCCCCEEEcccCcCCCCC-ccc-CCCCCCCCEEECCCCcCCCC--CCccCcCCC
Q 045705 216 LTNLATLYLDSNAL-SGSILNEI-GNLKSLYYLELTSNTLSGSI-PLP-LGNLTNLVVLELSDNKLSGL--IPPSFGNLT 289 (365)
Q Consensus 216 l~~L~~L~Ls~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~ 289 (365)
+.+|+.|+.+++.- +...-.++ .+..+|++|.+..++--+.. -.. -.+++.|+.+++.++..... +...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45666666665432 22222222 23456666666665521110 001 12344566666655544311 111112455
Q ss_pred ccceEEeeccccC-Ccc----hhhcCCCCCCCeEECcCCcCCC-CchhHhhhccCCCcEEEccCcc
Q 045705 290 NLTTLYVYKNSIF-GSI----LDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNH 349 (365)
Q Consensus 290 ~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~~~~~L~~L~l~~n~ 349 (365)
.|+.|.++++... +.. ...-..+..|..+.|++++.+. ..-..+...+ +|+.+++-+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q 437 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQ 437 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechh
Confidence 5666666655431 110 1111234455556666655431 2223333343 45555555543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.84 E-value=3 Score=22.43 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=6.7
Q ss_pred CCcEEEcccCcCC
Q 045705 218 NLATLYLDSNALS 230 (365)
Q Consensus 218 ~L~~L~Ls~n~l~ 230 (365)
+|++|++++|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555553
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.78 E-value=2.8 Score=22.87 Aligned_cols=13 Identities=54% Similarity=0.680 Sum_probs=7.7
Q ss_pred CCCeEECcCCcCC
Q 045705 314 SLSNINLSLNKLN 326 (365)
Q Consensus 314 ~L~~L~L~~N~l~ 326 (365)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666655
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=72.09 E-value=20 Score=34.34 Aligned_cols=204 Identities=16% Similarity=0.020 Sum_probs=101.9
Q ss_pred ceeeeccCCCCCCCcchhhhccc--cccceecccccccccc-----hhhhhCCCCCcEEEeeCCcCCC----ccC----c
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTW--PTWLLYLDINAISGSI-----LDEIRSLKSLFNLRLGDNTLSG----SIP----L 211 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~--~~~~l~L~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~i~~----~~~----~ 211 (365)
.++.+|++.|...+.+|...... .+....++.+...+.. +-..+.-+++...+++.|..+. ..+ +
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 58899999999988888654332 2333344444333222 2222344688888888877652 122 2
Q ss_pred CCCCCCCCcEEEcccCcCCCcchhh-hcCC---CC--CCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCcc
Q 045705 212 SLGNLTNLATLYLDSNALSGSILNE-IGNL---KS--LYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPS 284 (365)
Q Consensus 212 ~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l---~~--L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 284 (365)
.+..-+++ +|++..+.....-+.. +-.+ .. =-.+++..|...+ .....-.+-..+++|...+|.+.+.....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 23444566 7777666554322221 1111 00 1124555554432 11112222245888888888887664333
Q ss_pred C--cCCCccceEEeeccccCCc-chhhc--------CCCCCCCeEECcCCcCCCCchhHhhhc--cCCCcEEEccCcccc
Q 045705 285 F--GNLTNLTTLYVYKNSIFGS-ILDEI--------GNLKSLSNINLSLNKLNGSIPLSLTNL--TNSLEVVCLSSNHIV 351 (365)
Q Consensus 285 l--~~l~~L~~L~L~~n~l~~~-~~~~l--------~~l~~L~~L~L~~N~l~~~~p~~l~~~--~~~L~~L~l~~n~l~ 351 (365)
. ..-+..+.+++..-.-... .+... ..-.-+..+.++.|.+.......+..+ ...+..|++++|...
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 2 3345566666654321000 00000 112235667777777763332222221 125777777777654
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.76 E-value=3.5 Score=38.61 Aligned_cols=134 Identities=22% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCCCcEEEeeCCcC-CCccCcCC-CCCCCCcEEEcccCc-CCCcchhhh-cCCCCCCEEEcccCcCCC--CCcccCCCC
Q 045705 191 SLKSLFNLRLGDNTL-SGSIPLSL-GNLTNLATLYLDSNA-LSGSILNEI-GNLKSLYYLELTSNTLSG--SIPLPLGNL 264 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i-~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~~~~~~~~l 264 (365)
.+..|++|+.+++.- +...-.++ .+.++|+.|-++.|+ ++..--..+ .+.+.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345666666665433 21111112 345677777777776 332222222 345677777777765531 122223456
Q ss_pred CCCCEEECCCCcCCCCC-----CccCcCCCccceEEeeccccC-CcchhhcCCCCCCCeEECcCCc
Q 045705 265 TNLVVLELSDNKLSGLI-----PPSFGNLTNLTTLYVYKNSIF-GSILDEIGNLKSLSNINLSLNK 324 (365)
Q Consensus 265 ~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~N~ 324 (365)
+.|+.|.++++...... ...-..+..|..+.|+++... +...+.+..+++|+.+++.++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 77777777776543221 112234556777777777543 2334555667777777777765
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.53 E-value=13 Score=35.54 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCcEEEeeCCcCCCccCcCCCCC---CCCcEEEcccCcCC---CcchhhhcCCCCCCEEEcccCcC
Q 045705 194 SLFNLRLGDNTLSGSIPLSLGNL---TNLATLYLDSNALS---GSILNEIGNLKSLYYLELTSNTL 253 (365)
Q Consensus 194 ~L~~L~ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~l 253 (365)
.+.+++++.|.....+|..+..+ .-++.++.+...+. ...+-..+.-++++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35556666666555555433221 23455555544432 11122223334455555554433
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.61 E-value=4.5 Score=39.22 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=18.6
Q ss_pred CCCCCCEEEcccCcCCCCC--cccCCCCCCCCEEECCCC
Q 045705 239 NLKSLYYLELTSNTLSGSI--PLPLGNLTNLVVLELSDN 275 (365)
Q Consensus 239 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n 275 (365)
+.+.+..+.|++|++...- ..--...++|++|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3455566667777665211 111112355666666666
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.48 E-value=6.5 Score=38.17 Aligned_cols=64 Identities=25% Similarity=0.181 Sum_probs=34.7
Q ss_pred CCCCCcEEEeeCCcCCCc--cCcCCCCCCCCcEEEcccCcCCCcchhhhcC--CCCCCEEEcccCcCC
Q 045705 191 SLKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYLDSNALSGSILNEIGN--LKSLYYLELTSNTLS 254 (365)
Q Consensus 191 ~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~ 254 (365)
+.+.+..++|++|++... +...-...|+|++|+|++|.........+.+ ...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 446667777777777632 1111223567777788777221111222322 234677777777665
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.14 E-value=15 Score=19.31 Aligned_cols=12 Identities=33% Similarity=0.338 Sum_probs=8.2
Q ss_pred CCCcEEEcccCc
Q 045705 217 TNLATLYLDSNA 228 (365)
Q Consensus 217 ~~L~~L~Ls~n~ 228 (365)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777764
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.32 E-value=28 Score=40.76 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=24.3
Q ss_pred ecccccccccchhhhhCCCCCcEEEeeCCcCC
Q 045705 175 YLDINAISGSILDEIRSLKSLFNLRLGDNTLS 206 (365)
Q Consensus 175 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 206 (365)
+|++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46778887777777777888888888887765
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.12 E-value=37 Score=39.89 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=28.1
Q ss_pred ECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302 (365)
Q Consensus 271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 302 (365)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999888888999999999999999774
No 99
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=23.52 E-value=24 Score=16.03 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=5.3
Q ss_pred CchhhhcC
Q 045705 1 MNIAELND 8 (365)
Q Consensus 1 ~~~~~~~~ 8 (365)
|||.||++
T Consensus 1 m~rvqfk~ 8 (16)
T PF08047_consen 1 MNRVQFKH 8 (16)
T ss_pred CceeEecc
Confidence 56777775
Done!