Query 045705
Match_columns 365
No_of_seqs 461 out of 3070
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-32 1.7E-36 275.1 18.1 213 143-356 439-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-31 8E-36 270.2 19.0 292 35-365 344-707 (768)
3 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-31 2.3E-35 239.1 14.6 220 141-364 71-293 (313)
4 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-30 5.4E-35 236.7 12.7 216 147-365 51-271 (313)
5 4fcg_A Uncharacterized protein 100.0 4.7E-29 1.6E-33 228.4 16.7 214 146-365 81-304 (328)
6 3v47_A TOLL-like receptor 5B a 100.0 1.2E-28 4.2E-33 235.5 13.1 211 144-355 127-412 (455)
7 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-27 2.2E-31 209.9 19.6 210 144-354 30-241 (285)
8 1ozn_A Reticulon 4 receptor; N 99.9 6.8E-27 2.3E-31 209.8 19.6 214 149-365 14-228 (285)
9 4fcg_A Uncharacterized protein 99.9 1.1E-26 3.8E-31 212.6 18.1 210 138-352 96-315 (328)
10 4eco_A Uncharacterized protein 99.9 1.2E-27 4.2E-32 237.8 12.1 218 142-364 326-568 (636)
11 3zyi_A Leucine-rich repeat-con 99.9 2E-26 6.9E-31 220.2 19.9 219 144-365 73-293 (452)
12 4eco_A Uncharacterized protein 99.9 3.1E-27 1.1E-31 234.9 14.7 213 146-365 305-539 (636)
13 2z66_A Variable lymphocyte rec 99.9 7.1E-27 2.4E-31 211.8 15.4 210 143-353 49-263 (306)
14 2id5_A Lingo-1, leucine rich r 99.9 2.8E-27 9.7E-32 227.5 12.9 210 143-353 125-335 (477)
15 3t6q_A CD180 antigen; protein- 99.9 3.9E-27 1.3E-31 233.1 14.0 175 188-364 371-549 (606)
16 3v47_A TOLL-like receptor 5B a 99.9 1.5E-26 5.1E-31 221.1 17.3 223 142-365 75-398 (455)
17 3zyj_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 217.4 19.3 218 145-365 63-282 (440)
18 2o6q_A Variable lymphocyte rec 99.9 8.9E-26 3E-30 200.9 20.4 203 148-353 18-220 (270)
19 3t6q_A CD180 antigen; protein- 99.9 1.7E-26 5.8E-31 228.6 16.2 212 142-355 346-564 (606)
20 3rfs_A Internalin B, repeat mo 99.9 4.7E-26 1.6E-30 203.0 17.2 209 144-363 39-247 (272)
21 2id5_A Lingo-1, leucine rich r 99.9 5.2E-26 1.8E-30 218.7 16.3 218 147-365 33-275 (477)
22 1wwl_A Monocyte differentiatio 99.9 4.3E-27 1.5E-31 213.9 7.2 188 170-364 96-298 (312)
23 2z66_A Variable lymphocyte rec 99.9 5.2E-26 1.8E-30 206.1 14.2 217 146-364 28-250 (306)
24 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-26 1.1E-30 226.5 13.8 189 171-362 352-544 (606)
25 1p9a_G Platelet glycoprotein I 99.9 4.2E-25 1.4E-29 198.6 19.3 201 144-351 8-208 (290)
26 4ecn_A Leucine-rich repeat pro 99.9 2.4E-25 8.1E-30 226.3 19.7 210 147-364 549-808 (876)
27 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-25 9E-30 222.9 19.2 216 148-364 383-611 (680)
28 1xku_A Decorin; proteoglycan, 99.9 6.3E-25 2.2E-29 201.1 19.9 208 147-359 53-284 (330)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-25 7.2E-30 218.8 17.5 146 214-364 350-499 (562)
30 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-25 4.6E-30 218.1 15.6 146 214-364 321-470 (520)
31 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-25 1.2E-29 222.1 19.0 213 142-355 401-626 (680)
32 2z80_A TOLL-like receptor 2, v 99.9 3.8E-26 1.3E-30 211.2 11.1 180 147-326 53-235 (353)
33 2ft3_A Biglycan; proteoglycan, 99.9 8.7E-25 3E-29 200.4 18.4 211 145-360 53-286 (332)
34 2z62_A TOLL-like receptor 4, v 99.9 2.9E-25 9.8E-30 198.2 14.8 208 146-355 28-241 (276)
35 3o6n_A APL1; leucine-rich repe 99.9 5.2E-25 1.8E-29 206.3 16.7 216 143-363 66-319 (390)
36 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-24 3.7E-29 199.8 18.0 221 141-365 73-323 (332)
37 3oja_B Anopheles plasmodium-re 99.9 6.4E-25 2.2E-29 216.8 17.2 204 147-353 76-339 (597)
38 4ecn_A Leucine-rich repeat pro 99.9 2.5E-25 8.7E-30 226.1 14.0 211 141-359 590-826 (876)
39 3o6n_A APL1; leucine-rich repe 99.9 1.3E-24 4.6E-29 203.5 17.9 216 141-364 88-341 (390)
40 2z62_A TOLL-like receptor 4, v 99.9 8.5E-25 2.9E-29 195.1 15.6 195 169-365 28-227 (276)
41 3zyj_A Leucine-rich repeat-con 99.9 1.3E-24 4.4E-29 206.9 17.7 207 142-351 84-292 (440)
42 1wwl_A Monocyte differentiatio 99.9 2.3E-26 7.7E-31 209.1 4.2 201 145-352 94-310 (312)
43 2z80_A TOLL-like receptor 2, v 99.9 6.5E-25 2.2E-29 202.9 13.9 202 150-354 35-238 (353)
44 3zyi_A Leucine-rich repeat-con 99.9 2.5E-24 8.5E-29 205.6 18.3 212 149-365 57-269 (452)
45 3m19_A Variable lymphocyte rec 99.9 5.1E-24 1.8E-28 187.5 18.8 201 147-351 15-221 (251)
46 1xku_A Decorin; proteoglycan, 99.9 3.8E-24 1.3E-28 195.9 18.1 209 147-365 32-266 (330)
47 2o6q_A Variable lymphocyte rec 99.9 9.1E-24 3.1E-28 187.9 19.8 190 172-365 19-208 (270)
48 3j0a_A TOLL-like receptor 5; m 99.9 7.3E-25 2.5E-29 224.7 13.7 207 144-351 121-375 (844)
49 3oja_B Anopheles plasmodium-re 99.9 5.4E-24 1.8E-28 210.2 17.5 217 145-364 50-326 (597)
50 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4.2E-28 187.3 18.1 203 147-355 20-222 (272)
51 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-24 6.5E-29 213.9 14.2 211 143-355 347-562 (606)
52 3m19_A Variable lymphocyte rec 99.9 1.9E-23 6.4E-28 183.9 18.9 179 171-353 16-194 (251)
53 2z7x_B TOLL-like receptor 1, v 99.9 5.3E-24 1.8E-28 206.8 16.3 78 286-364 321-401 (520)
54 3j0a_A TOLL-like receptor 5; m 99.9 2.9E-24 1E-28 220.2 14.8 223 141-364 43-364 (844)
55 2z63_A TOLL-like receptor 4, v 99.9 6.2E-25 2.1E-29 215.6 9.2 185 170-356 348-536 (570)
56 3oja_A Leucine-rich immune mol 99.9 2.4E-24 8.1E-29 207.4 12.7 205 147-361 35-261 (487)
57 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1.1E-28 195.4 11.9 206 147-362 35-262 (317)
58 2xwt_C Thyrotropin receptor; s 99.9 4.7E-24 1.6E-28 186.3 11.6 189 170-362 32-229 (239)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-23 6.3E-28 205.0 16.3 106 146-254 52-159 (562)
60 1p9a_G Platelet glycoprotein I 99.9 5.3E-23 1.8E-27 184.8 16.9 186 170-364 11-197 (290)
61 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.2E-27 185.5 20.7 207 143-364 129-335 (347)
62 4glp_A Monocyte differentiatio 99.9 4.2E-24 1.4E-28 194.0 8.9 199 147-352 92-308 (310)
63 4glp_A Monocyte differentiatio 99.9 1.4E-23 5E-28 190.4 11.9 211 147-364 65-296 (310)
64 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-23 3.7E-28 206.0 11.7 160 144-303 48-210 (549)
65 2o6s_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 175.8 14.3 162 193-362 28-189 (208)
66 2z63_A TOLL-like receptor 4, v 99.9 2E-23 6.8E-28 204.9 12.8 213 147-365 305-521 (570)
67 2xwt_C Thyrotropin receptor; s 99.9 2.9E-23 1E-27 181.2 12.4 198 145-349 30-237 (239)
68 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.2E-27 194.0 18.2 191 146-352 199-389 (466)
69 1h6u_A Internalin H; cell adhe 99.9 2.1E-22 7.3E-27 182.5 17.8 193 144-352 39-231 (308)
70 3oja_A Leucine-rich immune mol 99.9 6.2E-24 2.1E-28 204.5 8.1 193 142-346 76-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 6E-24 2E-28 193.6 7.2 204 142-357 76-282 (317)
72 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-22 3.7E-27 198.9 15.2 213 146-358 26-243 (549)
73 4fmz_A Internalin; leucine ric 99.9 1E-21 3.5E-26 180.9 19.5 209 142-365 106-314 (347)
74 1o6v_A Internalin A; bacterial 99.9 9.9E-22 3.4E-26 188.3 19.9 206 142-365 173-378 (466)
75 2o6s_A Variable lymphocyte rec 99.9 4.2E-22 1.4E-26 170.1 13.2 195 150-358 11-205 (208)
76 3cvr_A Invasion plasmid antige 99.9 1.7E-21 5.9E-26 189.6 15.8 188 147-362 60-254 (571)
77 1jl5_A Outer protein YOPM; leu 99.9 2.7E-21 9.3E-26 184.4 16.8 199 142-361 149-382 (454)
78 3bz5_A Internalin-J, INLJ; leu 99.9 1E-20 3.6E-25 180.5 20.4 198 142-362 60-257 (457)
79 2ca6_A RAN GTPase-activating p 99.9 1.9E-23 6.3E-28 195.5 1.3 213 142-355 56-320 (386)
80 1jl5_A Outer protein YOPM; leu 99.9 3.2E-21 1.1E-25 183.9 16.8 198 142-361 191-421 (454)
81 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-20 4.3E-25 180.0 20.3 202 142-364 81-288 (457)
82 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.8E-25 171.2 18.7 198 150-365 23-220 (308)
83 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.5E-27 186.0 4.0 213 144-360 91-315 (336)
84 2ast_B S-phase kinase-associat 99.8 1.4E-22 4.8E-27 185.7 3.2 205 146-352 70-285 (336)
85 2xot_A Amphoterin-induced prot 99.8 8.7E-21 3E-25 175.8 14.3 177 149-327 21-203 (361)
86 2v9t_B SLIT homolog 2 protein 99.8 1.9E-20 6.5E-25 161.3 15.3 153 172-327 14-166 (220)
87 2ca6_A RAN GTPase-activating p 99.8 1.3E-22 4.5E-27 189.7 1.5 223 142-365 28-306 (386)
88 1h6t_A Internalin B; cell adhe 99.8 2.5E-20 8.6E-25 167.4 16.3 187 150-352 28-214 (291)
89 2v9t_B SLIT homolog 2 protein 99.8 1.9E-20 6.6E-25 161.2 14.8 153 149-303 14-166 (220)
90 3goz_A Leucine-rich repeat-con 99.8 5E-22 1.7E-26 184.2 5.1 212 142-354 18-269 (362)
91 4g8a_A TOLL-like receptor 4; l 99.8 9.9E-21 3.4E-25 187.6 13.8 180 170-351 53-237 (635)
92 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-20 8.1E-25 160.6 14.3 156 172-330 14-170 (220)
93 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-20 7.9E-25 185.0 15.6 179 177-358 39-221 (635)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-20 1.1E-24 159.8 14.1 155 148-304 13-168 (220)
95 2xot_A Amphoterin-induced prot 99.8 1.4E-20 4.8E-25 174.3 11.3 176 172-351 21-202 (361)
96 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.5E-24 156.9 16.4 155 172-330 22-176 (229)
97 3e6j_A Variable lymphocyte rec 99.8 2E-19 6.8E-24 155.8 16.6 154 148-304 21-174 (229)
98 4ezg_A Putative uncharacterize 99.8 2.9E-20 1E-24 157.2 10.7 154 190-352 41-195 (197)
99 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.8E-24 177.9 16.1 187 150-352 25-211 (605)
100 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-19 2.1E-23 173.6 20.7 193 145-360 80-306 (622)
101 3g06_A SSPH2 (leucine-rich rep 99.8 2.3E-19 8E-24 176.6 17.6 193 146-365 61-287 (622)
102 4ay9_X Follicle-stimulating ho 99.8 7.3E-20 2.5E-24 168.8 13.0 213 146-364 30-248 (350)
103 3goz_A Leucine-rich repeat-con 99.8 1.8E-21 6.2E-26 180.4 1.8 216 143-359 47-305 (362)
104 1m9s_A Internalin B; cell inva 99.8 2.9E-19 9.8E-24 175.7 15.8 172 144-328 41-212 (605)
105 1xeu_A Internalin C; cellular 99.8 1.6E-19 5.3E-24 159.8 11.4 166 147-326 20-185 (263)
106 1h6t_A Internalin B; cell adhe 99.8 4.9E-19 1.7E-23 159.0 14.7 171 144-327 44-214 (291)
107 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-21 6E-26 186.1 -2.8 211 142-353 166-413 (461)
108 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-21 1.3E-25 183.7 -1.1 218 147-365 143-401 (461)
109 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.2E-23 168.4 16.1 167 170-365 60-233 (571)
110 4ay9_X Follicle-stimulating ho 99.8 7.9E-19 2.7E-23 161.9 12.5 189 171-362 32-226 (350)
111 4ezg_A Putative uncharacterize 99.8 8.3E-19 2.8E-23 148.3 11.2 147 172-326 47-194 (197)
112 1w8a_A SLIT protein; signaling 99.8 1.6E-18 5.4E-23 146.0 12.7 131 196-329 11-142 (192)
113 2ell_A Acidic leucine-rich nuc 99.7 3.2E-18 1.1E-22 140.8 9.5 132 193-326 24-160 (168)
114 1xeu_A Internalin C; cellular 99.7 5E-18 1.7E-22 150.1 11.4 162 174-351 24-185 (263)
115 2ell_A Acidic leucine-rich nuc 99.7 5.8E-18 2E-22 139.2 10.5 138 216-357 23-165 (168)
116 4b8c_D Glucose-repressible alc 99.7 7.7E-19 2.6E-23 176.6 6.0 186 147-348 174-369 (727)
117 4b8c_D Glucose-repressible alc 99.7 2.7E-19 9.4E-24 179.8 2.6 146 210-359 217-362 (727)
118 1w8a_A SLIT protein; signaling 99.7 1.1E-17 3.7E-22 140.8 11.4 133 219-355 10-143 (192)
119 1dce_A Protein (RAB geranylger 99.7 2.4E-19 8.2E-24 175.1 0.0 185 145-353 348-548 (567)
120 1dce_A Protein (RAB geranylger 99.7 7.1E-20 2.4E-24 178.9 -4.2 94 266-365 442-536 (567)
121 2wfh_A SLIT homolog 2 protein 99.7 1E-16 3.5E-21 134.9 14.1 126 197-326 14-139 (193)
122 2o6r_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 131.4 15.4 133 195-330 9-141 (177)
123 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.8E-22 134.7 7.0 127 193-346 17-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.7 2.7E-17 9.2E-22 132.4 9.1 123 240-365 16-143 (149)
125 2wfh_A SLIT homolog 2 protein 99.7 2.1E-16 7.2E-21 133.0 13.1 129 219-352 12-140 (193)
126 2o6r_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 129.9 13.4 134 218-355 8-141 (177)
127 3sb4_A Hypothetical leucine ri 99.6 1.8E-16 6.1E-21 144.8 8.1 212 145-365 48-324 (329)
128 1a9n_A U2A', U2A'; complex (nu 99.6 3.4E-16 1.2E-20 129.6 8.5 105 242-351 43-153 (176)
129 1ds9_A Outer arm dynein; leuci 99.6 2.9E-18 1E-22 145.0 -6.7 153 192-352 17-186 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-16 2.1E-20 128.1 6.3 132 189-326 15-153 (176)
131 3ogk_B Coronatine-insensitive 99.6 4.1E-16 1.4E-20 153.5 2.3 217 144-364 110-380 (592)
132 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 5.8E-22 140.3 -7.0 136 185-327 40-186 (198)
133 3ogk_B Coronatine-insensitive 99.6 7.3E-16 2.5E-20 151.7 2.7 216 145-364 163-438 (592)
134 3g39_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 116.4 12.4 103 196-301 12-114 (170)
135 3g39_A Variable lymphocyte rec 99.5 5.4E-14 1.9E-18 115.6 12.7 105 219-326 11-115 (170)
136 2r9u_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 115.9 12.4 103 196-301 15-117 (174)
137 2r9u_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 114.6 12.5 103 173-278 16-118 (174)
138 2p1m_B Transport inhibitor res 99.5 3E-15 1E-19 147.3 -1.0 217 144-363 287-532 (594)
139 3un9_A NLR family member X1; l 99.5 1.4E-15 4.8E-20 140.9 -4.2 182 170-351 73-283 (372)
140 4fdw_A Leucine rich hypothetic 99.4 1.2E-12 4.2E-17 122.3 13.6 196 147-349 181-381 (401)
141 4fdw_A Leucine rich hypothetic 99.4 1.9E-12 6.4E-17 121.1 14.8 206 147-362 136-369 (401)
142 3un9_A NLR family member X1; l 99.4 3.7E-15 1.3E-19 138.1 -4.5 181 146-326 72-283 (372)
143 2p1m_B Transport inhibitor res 99.4 4.2E-14 1.4E-18 139.2 2.3 220 143-364 102-399 (594)
144 3sb4_A Hypothetical leucine ri 99.4 9E-13 3.1E-17 120.1 10.4 171 171-345 103-328 (329)
145 2ifg_A High affinity nerve gro 99.3 3.9E-12 1.3E-16 116.7 10.0 105 196-303 11-117 (347)
146 2ifg_A High affinity nerve gro 99.3 4.4E-12 1.5E-16 116.3 10.3 105 173-280 12-118 (347)
147 2ra8_A Uncharacterized protein 99.0 1.3E-10 4.3E-15 106.9 2.3 160 185-349 164-341 (362)
148 2ra8_A Uncharacterized protein 98.9 8.8E-10 3E-14 101.3 6.1 165 187-355 133-324 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 2.2E-09 7.4E-14 89.2 1.9 89 262-351 62-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.7 3.2E-09 1.1E-13 88.1 0.3 117 186-326 29-164 (185)
151 4fs7_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 85.0 13.6 161 193-364 230-390 (394)
152 4gt6_A Cell surface protein; l 98.5 2.4E-06 8.2E-11 79.4 15.0 111 236-351 260-370 (394)
153 4fs7_A Uncharacterized protein 98.4 2.8E-06 9.7E-11 78.9 13.6 170 184-365 199-369 (394)
154 3rw6_A Nuclear RNA export fact 98.4 7.1E-08 2.4E-12 84.3 1.8 64 190-255 167-234 (267)
155 3rw6_A Nuclear RNA export fact 98.3 5.8E-07 2E-11 78.5 6.2 42 238-279 167-210 (267)
156 3e4g_A ATP synthase subunit S, 98.3 2.7E-07 9.2E-12 75.1 3.4 84 241-324 61-150 (176)
157 4h09_A Hypothetical leucine ri 98.2 2.4E-05 8.3E-10 72.1 15.3 129 213-347 213-342 (379)
158 3e4g_A ATP synthase subunit S, 98.2 3.4E-07 1.2E-11 74.5 2.0 82 194-275 62-149 (176)
159 4gt6_A Cell surface protein; l 98.2 4.6E-06 1.6E-10 77.5 9.7 149 193-350 242-390 (394)
160 4h09_A Hypothetical leucine ri 98.1 1.3E-05 4.4E-10 73.9 10.5 137 185-326 209-345 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.9E-05 6.6E-10 65.3 2.5 88 263-351 68-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 1.7E-05 5.8E-10 65.6 1.4 65 190-254 38-111 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.002 6.7E-08 49.6 6.2 55 245-301 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0037 1.3E-07 48.0 6.4 56 221-278 12-68 (130)
165 2lz0_A Uncharacterized protein 64.8 8.2 0.00028 27.4 4.2 43 182-225 9-51 (100)
166 2lz0_A Uncharacterized protein 62.4 11 0.00038 26.7 4.6 44 205-249 8-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=5e-32 Score=275.10 Aligned_cols=213 Identities=35% Similarity=0.519 Sum_probs=143.2
Q ss_pred ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
...+.|+.|++++|.+.+.+|..+.. ..++.++++.|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 33445666677776666666654433 24556666677777666767777777777777777777666766777777777
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC----------------------------------------
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL---------------------------------------- 261 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---------------------------------------- 261 (365)
|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 7777777766667777777777777777776665554332
Q ss_pred ------------------------------CCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCC
Q 045705 262 ------------------------------GNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311 (365)
Q Consensus 262 ------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 311 (365)
+.+++|+.|++++|.+++.+|..++.+++|+.|+|++|.+++.+|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 22345666777777777777777777777777777777777677777777
Q ss_pred CCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705 312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 312 l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~ 356 (365)
+++|+.|||++|+++|.+|..+..++ +|++||+++|+++|.+|.
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCC-CCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECCCCcccCcCChHHhCCC-CCCEEECcCCcccccCCC
Confidence 77777777777777777777766666 577777777777777764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-31 Score=270.19 Aligned_cols=292 Identities=28% Similarity=0.372 Sum_probs=237.5
Q ss_pred HHHccCCCCcEEEeccccCCceee-EEEEEeeccccccceecccCCceEEeeccccccccceeeeecccccccccccccC
Q 045705 35 MVEYFDPCHPVLVGGIGLGKQNVG-YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPE 113 (365)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~w~~~~~~~~~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~ 113 (365)
.++++++++|.+.|.++....++. .++. ++. ..+.+.+..|. .++...+..+..+.+.+..
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~----L~L-s~N~l~~~~~~--~~~~~~~~~L~~L~L~~n~----------- 405 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLT----LDL-SSNNFSGPILP--NLCQNPKNTLQELYLQNNG----------- 405 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSE----EEC-CSSEEEEECCT--TTTCSTTCCCCEEECCSSE-----------
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcE----EEc-cCCCcCCCcCh--hhhhcccCCccEEECCCCc-----------
Confidence 378899999999999887755443 2222 444 44444432221 1111112233333332221
Q ss_pred ccccceeeeeccCCCCCCCccccccccccccccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCC
Q 045705 114 HMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSL 192 (365)
Q Consensus 114 ~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l 192 (365)
+.|.++. .+...+.|++|++++|.+.+.+|..+... .++.++++.|.+.+.+|..+..+
T Consensus 406 -------l~~~~p~-------------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 406 -------FTGKIPP-------------TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp -------EEEECCG-------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred -------cccccCH-------------HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 2332211 23344579999999999998888766543 67889999999999999999999
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 272 (365)
++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcc--------------------------------------------------------------------
Q 045705 273 SDNKLSGLIPPS-------------------------------------------------------------------- 284 (365)
Q Consensus 273 ~~n~l~~~~~~~-------------------------------------------------------------------- 284 (365)
++|.+++.+|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 999988766643
Q ss_pred --CcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705 285 --FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 285 --l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
++.+++|+.|++++|++++.+|..++.++.|+.|+|++|.++|.+|..+..++ +|+.|||++|+++|.+|..+++++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCC
Confidence 34467899999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred CCC
Q 045705 363 SLV 365 (365)
Q Consensus 363 ~L~ 365 (365)
+|+
T Consensus 705 ~L~ 707 (768)
T 3rgz_A 705 MLT 707 (768)
T ss_dssp CCS
T ss_pred CCC
Confidence 874
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.8e-31 Score=239.12 Aligned_cols=220 Identities=29% Similarity=0.428 Sum_probs=162.4
Q ss_pred ccccccceeeeccCC-CCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC
Q 045705 141 SVMFSMLFHVLDFPH-TAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN 218 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~-n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~ 218 (365)
.+...+.|++|++++ |.+.+.+|..+.. ..++.++|+.|.+++..|..+..+++|++|++++|.+++..|..+..+++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 344455677777774 7776666655443 25566777777777777777777777777777777777777777777777
Q ss_pred CcEEEcccCcCCCcchhhhcCCC-CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 219 LATLYLDSNALSGSILNEIGNLK-SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+++..|..+..+++|+.|+++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 77777777777767777777776 777777777777777777777766 7777777777777777777788888888888
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
+|.+.+.++. +..+++|++|+|++|.+++.+|..+..++ +|++|++++|+++|.+|.. +++++|
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L 293 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRF 293 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc-CCCEEECcCCcccccCCCC-cccccc
Confidence 8887665554 67778888888888888877888877777 6888888888888888765 555544
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.6e-30 Score=236.65 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=196.1
Q ss_pred ceeeeccCCCCCCC--cchhhhccc-cccceeccc-ccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 147 LFHVLDFPHTAYSD--SMEEAHVTW-PTWLLYLDI-NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 147 ~L~~L~ls~n~l~~--~~~~~~~~~-~~~~l~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
.++.|++++|.+.+ .+|..+... .++.++++. |.+.+.+|..++.+++|++|++++|.+++..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 68899999999988 777655543 678899994 99999999999999999999999999998999999999999999
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCC-CCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT-NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999999988999999999999999999999988999999998 999999999999988999999887 99999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..+..+..+++|+.|+|++|.+++.+|. +..++ +|++|++++|++++.+|..+.++++|+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCC
Confidence 988999999999999999999999966665 66666 799999999999999999999998874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.7e-29 Score=228.35 Aligned_cols=214 Identities=19% Similarity=0.247 Sum_probs=193.1
Q ss_pred cceeeeccCCCCCCCcchhhhc-cccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHV-TWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~-~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
..++.|++++|.+. .+|..+. -..++.++|+.|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 46899999999996 5555433 346788999999999 78899999999999999999999 77889999999999999
Q ss_pred ccCcCCCcchhhhcC---------CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEE
Q 045705 225 DSNALSGSILNEIGN---------LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY 295 (365)
Q Consensus 225 s~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 295 (365)
++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 999888888887764 999999999999999 788889999999999999999996 566799999999999
Q ss_pred eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..++ +|++|++++|++.+.+|..++++++|.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCce
Confidence 999999999999999999999999999999999999999988 799999999999999999999999874
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-28 Score=235.50 Aligned_cols=211 Identities=20% Similarity=0.183 Sum_probs=129.1
Q ss_pred cccceeeeccCCCCCCCcchhhh--ccccccceecccccccccchhhhhCC-----------------------------
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAH--VTWPTWLLYLDINAISGSILDEIRSL----------------------------- 192 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~--~~~~~~~l~L~~n~l~~~~~~~~~~l----------------------------- 192 (365)
..+.|++|++++|.+.+..|... ....++.++++.|.+++..+..+..+
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 34567777777777766655532 22355667777777776666555433
Q ss_pred -----CCCcEEEeeCCcCCCccCcCC-------------------------------------C--CCCCCcEEEcccCc
Q 045705 193 -----KSLFNLRLGDNTLSGSIPLSL-------------------------------------G--NLTNLATLYLDSNA 228 (365)
Q Consensus 193 -----~~L~~L~ls~n~i~~~~~~~~-------------------------------------~--~l~~L~~L~Ls~n~ 228 (365)
++|+.|++++|.+++..|..+ . ..++|++|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 345555555555443222111 0 01356666666666
Q ss_pred CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhh
Q 045705 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308 (365)
Q Consensus 229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 308 (365)
+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 66555666666667777777777766665666666677777777777766666666666677777777777766666666
Q ss_pred cCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 309 l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
+..+++|++|+|++|.+++..+..+..++ +|++|++++|++++..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcccCCC
Confidence 66677777777777777643333444555 57777777777766665
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.5e-27 Score=209.88 Aligned_cols=210 Identities=23% Similarity=0.219 Sum_probs=186.5
Q ss_pred cccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCc-CCCccCcCCCCCCCCcE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNT-LSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~ 221 (365)
..+.+++|++++|.+.+..+..+.. ..++.++++.|.+++..+..+..+++|++|++++|. ++...+..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3457999999999997766554433 367889999999998889999999999999999997 88777889999999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999988888999999999999999999977777799999999999999999987777899999999999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI 354 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~ 354 (365)
.+..+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|+++...
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEECSG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc-ccCEEeccCCCccCCC
Confidence 888899999999999999999999976666787787 7999999999998543
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.8e-27 Score=209.76 Aligned_cols=214 Identities=24% Similarity=0.218 Sum_probs=191.3
Q ss_pred eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705 149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228 (365)
Q Consensus 149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 228 (365)
++++.+++.+.. +|... ...++.++++.|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSS-CCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCccc-CCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 467888888854 44332 3467889999999998888899999999999999999998889999999999999999997
Q ss_pred -CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705 229 -LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD 307 (365)
Q Consensus 229 -l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (365)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 8877788999999999999999999988888899999999999999999988888899999999999999999877777
Q ss_pred hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+++..+..+..+++|.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccC
Confidence 899999999999999999977788888888 799999999999976667798888874
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-26 Score=212.59 Aligned_cols=210 Identities=19% Similarity=0.218 Sum_probs=189.0
Q ss_pred cccccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC-
Q 045705 138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN- 215 (365)
Q Consensus 138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~- 215 (365)
++..+...+.|++|++++|.+. .+|..+.. ..++.++|+.|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 3344555678999999999997 66664433 46788999999999 77999999999999999999988888887764
Q ss_pred --------CCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcC
Q 045705 216 --------LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGN 287 (365)
Q Consensus 216 --------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 287 (365)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..++.+++|++|++++|.+.+.+|..++.
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 999999999999998 788999999999999999999994 6677999999999999999999999999999
Q ss_pred CCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 288 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..++ +|+.+++..+.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 79999999887763
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.2e-27 Score=237.85 Aligned_cols=218 Identities=18% Similarity=0.170 Sum_probs=128.6
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCC-CcEEEeeCCcCCCccCcCCCCCC--C
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKS-LFNLRLGDNTLSGSIPLSLGNLT--N 218 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~~~~l~--~ 218 (365)
+...+.|++|++++|.+.+.+|.......++.++++.|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 44445666777777766656662112234555666666666 55666666666 777777766666 5555555443 6
Q ss_pred CcEEEcccCcCCCcchhhhc-------CCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCC---
Q 045705 219 LATLYLDSNALSGSILNEIG-------NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNL--- 288 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--- 288 (365)
|++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.++...+..+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 66666666666666666665 55666666666666663322334446666666666666663322233222
Q ss_pred ----CccceEEeeccccCCcchhhcC--CCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc------cCccccccCCh
Q 045705 289 ----TNLTTLYVYKNSIFGSILDEIG--NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL------SSNHIVGEIPL 356 (365)
Q Consensus 289 ----~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l------~~n~l~~~~p~ 356 (365)
++|+.|++++|.++ .+|..+. .+++|++|+|++|.+++ +|..+..++ +|+.|++ ++|++.+.+|.
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCcccccCcccccChH
Confidence 26666666666665 4444554 66666666666666664 666666665 5666666 34556666666
Q ss_pred hhhcCCCC
Q 045705 357 ELRKHSSL 364 (365)
Q Consensus 357 ~l~~l~~L 364 (365)
.++++++|
T Consensus 561 ~l~~l~~L 568 (636)
T 4eco_A 561 GITLCPSL 568 (636)
T ss_dssp TGGGCSSC
T ss_pred HHhcCCCC
Confidence 66666655
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2e-26 Score=220.16 Aligned_cols=219 Identities=20% Similarity=0.128 Sum_probs=189.0
Q ss_pred cccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
..+.+++|+|++|.+.+..+..+... .++.++|+.|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34579999999999987766655443 67889999999999888999999999999999999998888889999999999
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEcccC-cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTSN-TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence 99999999777778999999999999985 44434445688999999999999999865 3588899999999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|++++..+..+..+++|+
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCC
Confidence 888899999999999999999999977777788887 799999999999977777778887763
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.1e-27 Score=234.94 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=162.8
Q ss_pred cceeeeccCCCCCCCcchh--hhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC-CcE
Q 045705 146 MLFHVLDFPHTAYSDSMEE--AHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN-LAT 221 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~--~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~-L~~ 221 (365)
+.|++|++++|.+. .+|. .+.. ..++.++++.|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++
T Consensus 305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 56788888888876 5555 3333 356677777888877777 7777778888888888877 67777777887 888
Q ss_pred EEcccCcCCCcchhhhcCCC--CCCEEEcccCcCCCCCcccCC-------CCCCCCEEECCCCcCCCCCCccCcCCCccc
Q 045705 222 LYLDSNALSGSILNEIGNLK--SLYYLELTSNTLSGSIPLPLG-------NLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 292 (365)
|++++|.++ .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|++++|.++...+..+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 888888887 6777766654 788888888888877777777 677888888888888855444556688888
Q ss_pred eEEeeccccCCcchhhcCCC-------CCCCeEECcCCcCCCCchhHhh--hccCCCcEEEccCccccccCChhhhcCCC
Q 045705 293 TLYVYKNSIFGSILDEIGNL-------KSLSNINLSLNKLNGSIPLSLT--NLTNSLEVVCLSSNHIVGEIPLELRKHSS 363 (365)
Q Consensus 293 ~L~L~~n~l~~~~~~~l~~l-------~~L~~L~L~~N~l~~~~p~~l~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 363 (365)
+|++++|.++...+..+... ++|++|+|++|.++ .+|..+. .++ +|+.|++++|++++ +|..++++++
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCC
Confidence 89998888874433333333 28999999999999 8888876 777 79999999999996 8999999888
Q ss_pred CC
Q 045705 364 LV 365 (365)
Q Consensus 364 L~ 365 (365)
|+
T Consensus 538 L~ 539 (636)
T 4eco_A 538 LK 539 (636)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=7.1e-27 Score=211.77 Aligned_cols=210 Identities=22% Similarity=0.224 Sum_probs=138.3
Q ss_pred ccccceeeeccCCCCCCCcc--hh-hhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCC
Q 045705 143 MFSMLFHVLDFPHTAYSDSM--EE-AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTN 218 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~--~~-~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~ 218 (365)
...+.|++|++++|.+.... +. ......++.++++.|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 34456677777777665321 22 2222355666666776663 44556667777777777777765444 45667777
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 7777777777766666667777777777777777664 356666777777777777777776666677777777777777
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
+|.+.+..+..+..+++|++|++++|.+++..|..+..++.+|++|++++|++++.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77776665666677777777777777777666666666644577777777777643
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=227.54 Aligned_cols=210 Identities=18% Similarity=0.114 Sum_probs=162.7
Q ss_pred ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
...+.|+.|++++|.+.+..+..+.. ..++.++++.|.++...+..+..+++|+.|++++|.+.+..+..|..+++|++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 34456778888888776655544433 25667777888887777777788888888888888888777777888888888
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|...+.++.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 88888877667776666666888888888888855446788888888888888888877777888888888888888888
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
.+..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|+++..
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLETLILDSNPLACD 335 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-GCCEEECCSSCEECS
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-ccCEEEccCCCccCc
Confidence 888888888888889999998888855555556666 688899988888743
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=3.9e-27 Score=233.15 Aligned_cols=175 Identities=25% Similarity=0.206 Sum_probs=81.7
Q ss_pred hhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchh-hhcCCCCCCEEEcccCcCCCCCcccCCCCCC
Q 045705 188 EIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266 (365)
Q Consensus 188 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 266 (365)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 344444444444444444434444444444444444444444333222 2444444444444444444444444444444
Q ss_pred CCEEECCCCcCCCC---CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEE
Q 045705 267 LVVLELSDNKLSGL---IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV 343 (365)
Q Consensus 267 L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L 343 (365)
|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|++++..|..+..++ .| .|
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L 528 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YL 528 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EE
Confidence 55555554444431 113344445555555555555444445555555555555555555544455554444 35 55
Q ss_pred EccCccccccCChhhhcCCCC
Q 045705 344 CLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 344 ~l~~n~l~~~~p~~l~~l~~L 364 (365)
++++|++++..|..+..+++|
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTS
T ss_pred ECcCCcccccCHhhcccCCCC
Confidence 555555554444444444433
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.5e-26 Score=221.06 Aligned_cols=223 Identities=21% Similarity=0.207 Sum_probs=168.2
Q ss_pred cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhh--hhCCCCCcEEEeeCCcCCCccCcC-CCCCC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDE--IRSLKSLFNLRLGDNTLSGSIPLS-LGNLT 217 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~i~~~~~~~-~~~l~ 217 (365)
+...+.|++||+++|.+.+..|..+.. ..++.++|+.|.+++..+.. +..+++|++|++++|.+++..|.. +.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 445567999999999987776665543 36778889999998766655 888999999999999999777766 78899
Q ss_pred CCcEEEcccCcCCCcchhhhcCC----------------------------------CCCCEEEc---------------
Q 045705 218 NLATLYLDSNALSGSILNEIGNL----------------------------------KSLYYLEL--------------- 248 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l----------------------------------~~L~~L~L--------------- 248 (365)
+|++|++++|.+.+..+..+..+ ++|++|++
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 99999999998887666544332 33444444
Q ss_pred ------------------------------------------------ccCcCCCCCcccCCCCCCCCEEECCCCcCCCC
Q 045705 249 ------------------------------------------------TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL 280 (365)
Q Consensus 249 ------------------------------------------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 280 (365)
++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 44444444566677778888888888888877
Q ss_pred CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 281 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
.+..|.++++|++|++++|.+.+..+..+..+++|++|+|++|.+++..|..+..++ +|++|++++|++++..+..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhcc
Confidence 777888888888888888888777777788888888888888888866677777776 6888888888888655566677
Q ss_pred CCCCC
Q 045705 361 HSSLV 365 (365)
Q Consensus 361 l~~L~ 365 (365)
+++|.
T Consensus 394 l~~L~ 398 (455)
T 3v47_A 394 LTSLQ 398 (455)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 77663
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=217.40 Aligned_cols=218 Identities=20% Similarity=0.141 Sum_probs=177.3
Q ss_pred ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
...++.|+|++|.+.+..+..+.. ..++.++|+.|.++...+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 357888999999987766555443 3577888999999988888899999999999999999977777888999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCc-CCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNT-LSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 302 (365)
+++|.+....+..|..+++|++|++++|. +....+..+..+++|++|++++|.++.. | .+..+++|+.|+|++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC
Confidence 99999987667788889999999998854 4433444688888999999999988854 3 5778888999999999888
Q ss_pred CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|+|++|++++..+..+..+++|.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCCC
Confidence 88888888889999999999998866677777777 799999999999876667777777663
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.9e-26 Score=200.93 Aligned_cols=203 Identities=25% Similarity=0.249 Sum_probs=174.2
Q ss_pred eeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227 (365)
Q Consensus 148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 227 (365)
.+.++++++.+.. +|... ...++.++|+.|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 5578899998864 45433 245678899999999887788999999999999999999777777889999999999999
Q ss_pred cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD 307 (365)
Q Consensus 228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (365)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 99977777889999999999999999987778889999999999999999987777789999999999999999888778
Q ss_pred hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705 308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
.|..+++|++|+|++|.+++..+..+..++ +|+.|++++|++...
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCS
T ss_pred HhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCeeCC
Confidence 899999999999999999955454566676 799999999998744
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.7e-26 Score=228.55 Aligned_cols=212 Identities=22% Similarity=0.166 Sum_probs=186.4
Q ss_pred cccccceeeeccCCCCCCCcc--hhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcC-CCCCC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSM--EEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS-LGNLT 217 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~--~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~l~ 217 (365)
+...+.|++|++++|.+.+.. +..+.. ..++.++++.|.+.+..+..+..+++|+.|++++|.+++..+.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 345568999999999997665 333322 36788999999999988999999999999999999998776544 88999
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC---CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS---IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 294 (365)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 999999999999988899999999999999999999752 33568889999999999999999889999999999999
Q ss_pred EeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
++++|++++..|..+..++.| .|++++|.+++..|..+..++ +|+.|++++|+++...+
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS-QQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH-TSSEEECTTCCEECSGG
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC-CCCEEeCCCCCccccCC
Confidence 999999999999999999999 999999999988888888888 79999999999986554
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=4.7e-26 Score=202.97 Aligned_cols=209 Identities=24% Similarity=0.198 Sum_probs=183.3
Q ss_pred cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
....|+.|++++|.+.. ++.......++.++++.|.+++. ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34468899999998854 44444445678899999999863 4788999999999999999988888899999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999998778889999999999999999997777778999999999999999998888888999999999999999998
Q ss_pred cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCC
Q 045705 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS 363 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 363 (365)
..+..+..+++|+.|++++|.+.+..| +|+.|+++.|.++|.+|.+++.++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccCC
Confidence 888889999999999999999985543 5889999999999999999887753
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=218.69 Aligned_cols=218 Identities=20% Similarity=0.124 Sum_probs=121.2
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
.+++||+++|.+.+..+..+.. ..++.++|+.|.+++..|..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 4555555555554443333322 234455555555555555555555555555555555554444445555555555555
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCC------------------------C
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL------------------------I 281 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~ 281 (365)
+|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 5555544455555555555555555555544444555555555555555555544 3
Q ss_pred CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705 282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH 361 (365)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l 361 (365)
+..|..+++|+.|++++|...+.++.......+|++|++++|.+++..+..+..++ +|+.|++++|.+++..+..+.++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTC
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhcccc
Confidence 44444444455555554444444433333344666666777777733334566666 68888888888887777778777
Q ss_pred CCCC
Q 045705 362 SSLV 365 (365)
Q Consensus 362 ~~L~ 365 (365)
++|.
T Consensus 272 ~~L~ 275 (477)
T 2id5_A 272 LRLQ 275 (477)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 7763
No 22
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.3e-27 Score=213.87 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=106.4
Q ss_pred cccceecccccccccchhhh--hCCCCCcEEEeeCCcCCCccCcCCCCC-----CCCcEEEcccCcCCCcchhhhcCCCC
Q 045705 170 PTWLLYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIPLSLGNL-----TNLATLYLDSNALSGSILNEIGNLKS 242 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~ 242 (365)
.++.++|+.|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..|+.+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 34455555555555555544 5555566666666665544 4444444 55666666666665555555666666
Q ss_pred CCEEEcccCcCCCC--CcccC--CCCCCCCEEECCCCcCCCC---CCccCcCCCccceEEeeccccCCcch-hhcCCCCC
Q 045705 243 LYYLELTSNTLSGS--IPLPL--GNLTNLVVLELSDNKLSGL---IPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKS 314 (365)
Q Consensus 243 L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 314 (365)
|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 66666666655432 12222 5555666666666665521 11223345666666666666665543 34455667
Q ss_pred CCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 315 LSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 315 L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
|++|+|++|.++ .+|..+. + +|++|++++|++++. |. +..+++|
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~-~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--A-KLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--S-EEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred CCEEECCCCccC-hhhhhcc--C-CceEEECCCCCCCCC-hh-HhhCCCC
Confidence 777777777776 6665554 3 577777777777744 54 6665544
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-26 Score=206.09 Aligned_cols=217 Identities=22% Similarity=0.196 Sum_probs=173.2
Q ss_pred cceeeeccCCCCCCCcchhhhcc-ccccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
+.+++|++++|.+....+..+.. ..++.++|+.|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 46888999998886443333322 3567788888888743 3667778889999999999888 566668888899999
Q ss_pred EcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccceEEeeccc
Q 045705 223 YLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 223 ~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~ 300 (365)
++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999998875544 578888899999999998887777788888899999999998876 467888888899999999998
Q ss_pred cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC-CC
Q 045705 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS-SL 364 (365)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L 364 (365)
+.+..+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|++++..|..+..++ +|
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhhccC
Confidence 8887788888888999999999998865555666676 799999999999888888887774 55
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.3e-26 Score=226.50 Aligned_cols=189 Identities=24% Similarity=0.152 Sum_probs=119.5
Q ss_pred ccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEE
Q 045705 171 TWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLE 247 (365)
Q Consensus 171 ~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ 247 (365)
++.++++.|.+++. .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 44455555666544 2556666666666666666666 344566666666666666666665555 4566666666666
Q ss_pred cccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 248 LTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 248 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
+++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|.+++..|..+..+++|++|++++|+++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 66666666566666666666666666666665 25566666666666666666666666666666666666666666666
Q ss_pred CCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705 327 GSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 327 ~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
+..|..+..++ +|++|++++|+++ .+|..+..++
T Consensus 511 ~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 511 FLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp CEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSC
T ss_pred CcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhc
Confidence 55566666665 5666666666666 5555555554
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=4.2e-25 Score=198.57 Aligned_cols=201 Identities=22% Similarity=0.167 Sum_probs=178.0
Q ss_pred cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
..+.++.++++++.+.. +|.... ..++.++|+.|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 34468899999999964 444332 4668899999999998899999999999999999999965443 7899999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999998 678889999999999999999997777889999999999999999998888889999999999999999988
Q ss_pred cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
..+..|..+++|++|+|++|.++ .+|..++... +|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence 77778899999999999999999 8898888887 7999999999886
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.4e-25 Score=226.32 Aligned_cols=210 Identities=19% Similarity=0.199 Sum_probs=130.0
Q ss_pred ceeeeccCCCCCCCcchh--hhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC-CcEE
Q 045705 147 LFHVLDFPHTAYSDSMEE--AHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN-LATL 222 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~--~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~-L~~L 222 (365)
.|+.|++++|.+. .+|. .+.. ..++.++|+.|.++ .+| .++.+++|+.|++++|.++ .+|..+.++++ |++|
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 6777777777776 5555 3332 35666777777777 566 6777777788888877777 67777777777 8888
Q ss_pred EcccCcCCCcchhhhcCCCC--CCEEEcccCcCCCCCcccC---C--------------------------CCCCCCEEE
Q 045705 223 YLDSNALSGSILNEIGNLKS--LYYLELTSNTLSGSIPLPL---G--------------------------NLTNLVVLE 271 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--------------------------~l~~L~~L~ 271 (365)
++++|.++ .+|..+..+.. |+.|++++|.+.+.+|... . .+++|+.|+
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 88888777 66766666544 7888888887765444211 1 233445555
Q ss_pred CCCCcCCCCCCccCcC-------CCccceEEeeccccCCcchhhcC--CCCCCCeEECcCCcCCCCchhHhhhccCCCcE
Q 045705 272 LSDNKLSGLIPPSFGN-------LTNLTTLYVYKNSIFGSILDEIG--NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342 (365)
Q Consensus 272 L~~n~l~~~~~~~l~~-------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~ 342 (365)
+++|.++...+..+.. +++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+++ +|..+..++ +|+.
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~ 780 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKA 780 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCE
Confidence 5555544222222221 125666666666664 3444554 56666666666666663 566666665 5666
Q ss_pred EEccC------ccccccCChhhhcCCCC
Q 045705 343 VCLSS------NHIVGEIPLELRKHSSL 364 (365)
Q Consensus 343 L~l~~------n~l~~~~p~~l~~l~~L 364 (365)
|++++ |.+.+.+|..+.++++|
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred EECCCCCCcccccccccChHHHhcCCCC
Confidence 66654 55666666666666665
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2.6e-25 Score=222.93 Aligned_cols=216 Identities=25% Similarity=0.257 Sum_probs=126.4
Q ss_pred eeeeccCCCCCCCcchhhhcc-ccccceecccccccccch-hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 148 FHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSIL-DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 148 L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
|+.|++++|.+.+..+..+.. ..++.++++.|.+++.++ ..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 444444444444333332221 133444555555544333 344455555555555555554445555555555555555
Q ss_pred cCcCC--CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCC--------ccCcCCCccceEE
Q 045705 226 SNALS--GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIP--------PSFGNLTNLTTLY 295 (365)
Q Consensus 226 ~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~ 295 (365)
+|.+. +..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+.++++|+.|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 55543 3456666677777777777777776656667777777777777777664311 2356677777777
Q ss_pred eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh-cCCCC
Q 045705 296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR-KHSSL 364 (365)
Q Consensus 296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L 364 (365)
+++|.+....+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|++++..|..+. .+++|
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC-CCCEEECCCCcCCccChhHhccccccc
Confidence 777777655555677777777777777777733333344555 677777777777766665554 44444
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.3e-25 Score=201.08 Aligned_cols=208 Identities=24% Similarity=0.251 Sum_probs=116.2
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS------------------- 206 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~------------------- 206 (365)
.+++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..|..+++|++|++++|.++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~ 132 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 132 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence 4555666666655444332222 24455556666666555555666666666666666555
Q ss_pred --CccCcCCCCCCCCcEEEcccCcCCC--cchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCC
Q 045705 207 --GSIPLSLGNLTNLATLYLDSNALSG--SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIP 282 (365)
Q Consensus 207 --~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 282 (365)
+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++..+
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCH
Confidence 3333334444444444444444431 33344444555555555555544 2333222 456666666666665556
Q ss_pred ccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh
Q 045705 283 PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR 359 (365)
Q Consensus 283 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~ 359 (365)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++++..+..|.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS-SCCEEECCSSCCCCCCTTSSS
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC-CcCEEECCCCcCCccChhhcC
Confidence 66666667777777777766655556666677777777777776 6666666665 577777777777654444443
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.1e-25 Score=218.84 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=110.4
Q ss_pred CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC--cccCCCCCCCCEEECCCCcCCCCCC-ccCcCCCc
Q 045705 214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI--PLPLGNLTNLVVLELSDNKLSGLIP-PSFGNLTN 290 (365)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 290 (365)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++.. |..+..+++|++|++++|.+++.+| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56778888888888888777888888888888888888887532 3567788888888888888877333 45777888
Q ss_pred cceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh-hhcCCCC
Q 045705 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHSSL 364 (365)
Q Consensus 291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L 364 (365)
|++|++++|.+++..+..+. ++|+.|+|++|.++ .+|..++.++ +|++|++++|+++ .+|.. +..+++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ-ALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC-CCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC-CCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 88888888888766655443 57888888888888 7777777666 6888888888888 56655 7777665
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=218.09 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=112.4
Q ss_pred CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccCCCCCCCCEEECCCCcCCCCCCc-cCcCCCc
Q 045705 214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPLGNLTNLVVLELSDNKLSGLIPP-SFGNLTN 290 (365)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~ 290 (365)
..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567788888888888887778888888888888888888875 3456677888888888888888774443 4777788
Q ss_pred cceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh-hhcCCCC
Q 045705 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHSSL 364 (365)
Q Consensus 291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L 364 (365)
|++|++++|.+++..+..+. ++|+.|++++|.++ .+|..+..++ +|++|++++|+++ .+|.. +..+++|
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE-ALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC-CCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 88888888888776666554 67888888888888 7887777776 6888888888888 56654 7777766
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=3.5e-25 Score=222.08 Aligned_cols=213 Identities=20% Similarity=0.183 Sum_probs=170.5
Q ss_pred cccccceeeeccCCCCCCCcchhhhcc--ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC--CccCcCCCCCC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVT--WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS--GSIPLSLGNLT 217 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~--~~~~~~~~~l~ 217 (365)
+...+.|++|++++|.+.+.++...+. ..++.++++.|.+.+..+..|..+++|+.|++++|.++ +..|..+.+++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 345567889999999887766533222 35677888889888888888888899999999998876 56788888899
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC--------cccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI--------PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 289 (365)
+|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.+.+..|.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 9999999999998777778888999999999999887432 12367888899999999998866666788899
Q ss_pred ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhh-hccCCCcEEEccCccccccCC
Q 045705 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLT-NLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~~~~~L~~L~l~~n~l~~~~p 355 (365)
+|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+. .++ +|+.|++++|++...-+
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR-NLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT-TCSEEECTTCCCCBCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc-ccCEEEccCCCcccCCc
Confidence 999999999999877777788889999999999999866666565 455 79999999998875543
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=211.19 Aligned_cols=180 Identities=21% Similarity=0.138 Sum_probs=95.3
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
.|++|++++|.+.+..+..+.. ..++.++++.|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 4556666666654433322222 244555555666655555555566666666666666654443445556666666666
Q ss_pred cCcCCCcch-hhhcCCCCCCEEEcccC-cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 226 SNALSGSIL-NEIGNLKSLYYLELTSN-TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 226 ~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+|.+++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 666553222 24555666666666665 2443334455555666666666666655555555555555555555555533
Q ss_pred cchhhcCCCCCCCeEECcCCcCC
Q 045705 304 SILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
.....+..+++|+.|++++|.++
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCT
T ss_pred chhhhhhhcccccEEECCCCccc
Confidence 32222333445555555555544
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=8.7e-25 Score=200.37 Aligned_cols=211 Identities=24% Similarity=0.254 Sum_probs=160.5
Q ss_pred ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
.+.+++|++++|.+.+..+..+.. ..++.++++.|.+++..|..|..+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 457999999999997766654433 36788999999999888999999999999999999999 5555444 7999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccCCCC--------------------CCCCEEECCCCcCCCCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPLGNL--------------------TNLVVLELSDNKLSGLI 281 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l--------------------~~L~~L~L~~n~l~~~~ 281 (365)
+++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ ++|++|++++|.+++..
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence 99999997777789999999999999999852 445555544 35566666666666655
Q ss_pred CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|++++..+..+..
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSSC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHccc
Confidence 566777777777777777776666666777777777777777777 6676666666 5777777777777555555544
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.9e-25 Score=198.22 Aligned_cols=208 Identities=23% Similarity=0.189 Sum_probs=179.0
Q ss_pred cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
..+++|++++|.+.+..+..+.. ..++.++++.|.++...+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46899999999997766544433 36788999999999888889999999999999999999888889999999999999
Q ss_pred ccCcCCCcchhhhcCCCCCCEEEcccCcCCCC-CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccc----eEEeecc
Q 045705 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGS-IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT----TLYVYKN 299 (365)
Q Consensus 225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n 299 (365)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977777899999999999999999863 588999999999999999999988778888777777 8999999
Q ss_pred ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
.+.+..+..+.. .+|++|++++|.+++..+..+..++ +|+.|++++|++++..|
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCCTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccc-cccEEEccCCcccccCC
Confidence 997766655554 4899999999999955444556676 79999999999997655
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=206.31 Aligned_cols=216 Identities=21% Similarity=0.186 Sum_probs=139.3
Q ss_pred ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
...+.|++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..++.+++|++|++++|.++...+..|.++++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 44567999999999997665544433 36788999999999888888999999999999999999666666789999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC-------------------------------------
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL------------------------------------- 264 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------------------- 264 (365)
|++++|.+.+..+..+..+++|++|++++|.+++.....+..+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 9999999987778889999999999999998874322222111
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEE
Q 045705 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC 344 (365)
Q Consensus 265 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~ 344 (365)
++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++ .+|..+..++ +|++|+
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP-TLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCT-TCCEEE
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCC-CCCEEE
Confidence 1233333333333322 23444455555555555554444455555555555555555554 3333333333 355555
Q ss_pred ccCccccccCChhhhcCCC
Q 045705 345 LSSNHIVGEIPLELRKHSS 363 (365)
Q Consensus 345 l~~n~l~~~~p~~l~~l~~ 363 (365)
+++|+++ .+|..+..+++
T Consensus 302 L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTT
T ss_pred CCCCcce-ecCccccccCc
Confidence 5555444 34444444433
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.1e-24 Score=199.76 Aligned_cols=221 Identities=19% Similarity=0.166 Sum_probs=178.9
Q ss_pred ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
.+...+.|++|++++|.+.+..|..+.. ..++.++++.|.++. +|..+. ++|++|++++|.+++..+..+.++++|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 3455678999999999998776765544 367889999999984 454443 799999999999997777789999999
Q ss_pred cEEEcccCcCCC--cchhhhcCC--------------------CCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcC
Q 045705 220 ATLYLDSNALSG--SILNEIGNL--------------------KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL 277 (365)
Q Consensus 220 ~~L~Ls~n~l~~--~~~~~l~~l--------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 277 (365)
++|++++|.++. ..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 999999999852 445554433 4677788888888877778899999999999999999
Q ss_pred CCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhc-----cCCCcEEEccCcccc-
Q 045705 278 SGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNL-----TNSLEVVCLSSNHIV- 351 (365)
Q Consensus 278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~-----~~~L~~L~l~~n~l~- 351 (365)
++..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+... ...|+.|++++|+++
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9888888999999999999999996 667789999999999999999995544444432 236899999999987
Q ss_pred -ccCChhhhcCCCCC
Q 045705 352 -GEIPLELRKHSSLV 365 (365)
Q Consensus 352 -~~~p~~l~~l~~L~ 365 (365)
+..|..+..+++|+
T Consensus 309 ~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 309 WEVQPATFRCVTDRL 323 (332)
T ss_dssp GGSCGGGGTTBCCST
T ss_pred cccCcccccccchhh
Confidence 67778888887764
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.4e-25 Score=216.84 Aligned_cols=204 Identities=25% Similarity=0.215 Sum_probs=102.5
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
.|++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..|+.+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 3444555554444333322221 133444444444444444444444455555555554443333334444445555555
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCC------------------------------------------------
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSI------------------------------------------------ 257 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~------------------------------------------------ 257 (365)
+|.+++..|..|..+++|++|++++|.+.+..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~ 235 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence 55444444444444444444444444443221
Q ss_pred -----------cccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 258 -----------PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 258 -----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
+..+..+++|+.|++++|.+.+..|..|+.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.++
T Consensus 236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 1234445555666666666655555556666666666666666543 2444455566666666666666
Q ss_pred CCchhHhhhccCCCcEEEccCcccccc
Q 045705 327 GSIPLSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 327 ~~~p~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
.+|..+..++ +|+.|++++|.+++.
T Consensus 315 -~i~~~~~~l~-~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 315 -HVERNQPQFD-RLENLYLDHNSIVTL 339 (597)
T ss_dssp -CCGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred -ccCcccccCC-CCCEEECCCCCCCCc
Confidence 5555555555 466666666666533
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.5e-25 Score=226.11 Aligned_cols=211 Identities=18% Similarity=0.161 Sum_probs=161.1
Q ss_pred ccccccceeeeccCCCCCCCcchhhhccc-c-ccceecccccccccchhhhhCCC--CCcEEEeeCCcCCCccCcC---C
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVTW-P-TWLLYLDINAISGSILDEIRSLK--SLFNLRLGDNTLSGSIPLS---L 213 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~-~~~l~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~i~~~~~~~---~ 213 (365)
.+...+.|+.|++++|.+. .+|..+... . ++.++|+.|.++ .+|..+..+. +|+.|++++|.+.+.+|.. +
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 3444556777777777775 555444333 3 666777777777 5666665553 3777777777777655432 2
Q ss_pred C--CCCCCcEEEcccCcCCCcchhh-hcCCCCCCEEEcccCcCCCCCcccCCCC--------CCCCEEECCCCcCCCCCC
Q 045705 214 G--NLTNLATLYLDSNALSGSILNE-IGNLKSLYYLELTSNTLSGSIPLPLGNL--------TNLVVLELSDNKLSGLIP 282 (365)
Q Consensus 214 ~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~ 282 (365)
. .+++|++|++++|.++ .+|.. +..+++|+.|+|++|.+. .+|..+... ++|+.|+|++|.++ .+|
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 2 2347888899988888 45544 458999999999999999 556544332 38999999999999 677
Q ss_pred ccCc--CCCccceEEeeccccCCcchhhcCCCCCCCeEECcC------CcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705 283 PSFG--NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL------NKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI 354 (365)
Q Consensus 283 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~------N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~ 354 (365)
..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+..++ +|+.|++++|++ +.+
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI-RKV 821 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC-CCCEEECCCCCC-Ccc
Confidence 7776 89999999999999987 688889999999999976 888889999999998 799999999999 589
Q ss_pred Chhhh
Q 045705 355 PLELR 359 (365)
Q Consensus 355 p~~l~ 359 (365)
|..+.
T Consensus 822 p~~l~ 826 (876)
T 4ecn_A 822 DEKLT 826 (876)
T ss_dssp CSCCC
T ss_pred CHhhc
Confidence 98765
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-24 Score=203.54 Aligned_cols=216 Identities=24% Similarity=0.234 Sum_probs=176.3
Q ss_pred ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
.+...+.|++|++++|.+.+..+..+.. ..++.++++.|.++...+..|..+++|++|++++|.+++..+..+.++++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 3456678999999999998877765543 367889999999997666667999999999999999998888889999999
Q ss_pred cEEEcccCcCCCcchhhhcCC-------------------------------------CCCCEEEcccCcCCCCCcccCC
Q 045705 220 ATLYLDSNALSGSILNEIGNL-------------------------------------KSLYYLELTSNTLSGSIPLPLG 262 (365)
Q Consensus 220 ~~L~Ls~n~l~~~~~~~l~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~ 262 (365)
++|++++|.+++.....+..+ ++|++|++++|.+.+. ..+.
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGG
T ss_pred CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHc
Confidence 999999999985433333222 2466666666666642 4678
Q ss_pred CCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcE
Q 045705 263 NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342 (365)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~ 342 (365)
.+++|++|++++|.+++..|..|..+++|+.|++++|.+.+ ++..+..+++|++|++++|+++ .+|..+..++ +|+.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~ 322 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLEN 322 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccC-cCCE
Confidence 89999999999999998889999999999999999999965 4666678999999999999999 7888888887 7999
Q ss_pred EEccCccccccCChhhhcCCCC
Q 045705 343 VCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 343 L~l~~n~l~~~~p~~l~~l~~L 364 (365)
|++++|++++. | +..+++|
T Consensus 323 L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 323 LYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp EECCSSCCCCC-C--CCTTCCC
T ss_pred EECCCCcccee-C--chhhccC
Confidence 99999999854 3 4444444
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.5e-25 Score=195.14 Aligned_cols=195 Identities=25% Similarity=0.278 Sum_probs=172.4
Q ss_pred ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEc
Q 045705 169 WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248 (365)
Q Consensus 169 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 248 (365)
..++.++++.|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35688999999999888889999999999999999999888889999999999999999999888889999999999999
Q ss_pred ccCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCcCCCccceEEeeccccCCcchhhcCCCCCCC----eEECcCC
Q 045705 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS----NINLSLN 323 (365)
Q Consensus 249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~N 323 (365)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999977777899999999999999999875 588999999999999999999887777777666666 8999999
Q ss_pred cCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 324 KLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 324 ~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.++ .++....... +|+.|++++|++++..+..+.++++|+
T Consensus 188 ~l~-~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 188 PMN-FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp CCC-EECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred ccc-ccCccccCCC-cccEEECCCCceeecCHhHhccccccc
Confidence 999 5555555555 699999999999976666778888774
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=206.90 Aligned_cols=207 Identities=26% Similarity=0.223 Sum_probs=181.1
Q ss_pred cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCc
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA 220 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~ 220 (365)
+...+.|++|+|++|.+.+..+..+.. ..++.++|+.|+++...+..|..+++|++|++++|.++...+..|.++++|+
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 345568999999999997766555543 3678899999999988888899999999999999999988888999999999
Q ss_pred EEEcccC-cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecc
Q 045705 221 TLYLDSN-ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299 (365)
Q Consensus 221 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 299 (365)
+|++++| .+....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 9999995 455444557999999999999999998 555 4788999999999999999988999999999999999999
Q ss_pred ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
.+.+..+..|..+++|+.|+|++|++++..+..+..++ +|+.|++++|++.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT-TCCEEECCSSCEE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc-CCCEEEcCCCCcc
Confidence 99998899999999999999999999955555666676 7999999999875
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.3e-26 Score=209.13 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=154.6
Q ss_pred ccceeeeccCCCCCCCcchhhh---ccccccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccCcCCCCC
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAH---VTWPTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIPLSLGNL 216 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~---~~~~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~~~~~~l 216 (365)
.+.|++|++++|.+.+.+|... ....++.++|+.|++++. |..++.+ ++|++|++++|.+++..+..+.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4578888999888887777654 223567788888888877 7777666 888999999998888777888888
Q ss_pred CCCcEEEcccCcCCCc--chhhh--cCCCCCCEEEcccCcCCCC--Cc-ccCCCCCCCCEEECCCCcCCCCCC-ccCcCC
Q 045705 217 TNLATLYLDSNALSGS--ILNEI--GNLKSLYYLELTSNTLSGS--IP-LPLGNLTNLVVLELSDNKLSGLIP-PSFGNL 288 (365)
Q Consensus 217 ~~L~~L~Ls~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l 288 (365)
++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. .+ ..+..+++|++|++++|.+++..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8999999998887654 34444 7888899999998888731 11 234567888999999998887664 456677
Q ss_pred CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 289 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +..++ +|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCC
Confidence 88899999998886 5565555 7888899999988844 65 66776 68899999988874
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.5e-25 Score=202.93 Aligned_cols=202 Identities=19% Similarity=0.151 Sum_probs=174.7
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 229 (365)
+.|.+++.++ .+|.... ..++.++++.|+++...+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 35 ~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 3677888885 4454333 3678899999999987777999999999999999999988888999999999999999999
Q ss_pred CCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705 230 SGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD 307 (365)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (365)
++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 97666679999999999999999995444 47889999999999999 47766778899999999999999999888899
Q ss_pred hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705 308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI 354 (365)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~ 354 (365)
.+..+++|++|++++|.++ .+|..+.....+|+.|++++|.+++..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence 9999999999999999997 677665553348999999999998643
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2.5e-24 Score=205.64 Aligned_cols=212 Identities=23% Similarity=0.183 Sum_probs=185.2
Q ss_pred eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705 149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228 (365)
Q Consensus 149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 228 (365)
..++.++..+. .+|... ...++.++|+.|++++..+..|..+++|+.|++++|.+++..+..|.++++|++|+|++|.
T Consensus 57 ~~v~c~~~~l~-~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcC-ccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 45667777774 344432 2456889999999999999999999999999999999998888999999999999999999
Q ss_pred CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD 307 (365)
Q Consensus 229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 307 (365)
++...+..|..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..|.++++|+.|++++|.+.+. .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~ 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c
Confidence 99777778999999999999999999777778999999999999994 55545556799999999999999999765 3
Q ss_pred hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..+++|++|+|++|.+++..|..+..++ +|+.|++++|++++..|..|.++++|+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 588899999999999999977788888888 799999999999999899999988874
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=5.1e-24 Score=187.45 Aligned_cols=201 Identities=24% Similarity=0.186 Sum_probs=166.0
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
..+.+|++++.+. .+|.... ..++.++|+.|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4567899999885 4444332 4667899999999998888999999999999999999988888899999999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++|+|++|.+.+..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99998778889999999999999999997777778899999999999999998877789999999999999999988888
Q ss_pred hhcCCCCCCCeEECcCCcCCCC------chhHhhhccCCCcEEEccCcccc
Q 045705 307 DEIGNLKSLSNINLSLNKLNGS------IPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~~~------~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
..+..+++|+.|+|++|++.+. ++.++.... .+..+..++.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 221 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS--NKVKDGTGQNLH 221 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSG--GGBCC-------
T ss_pred HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcc--cceeeccCcccc
Confidence 8899999999999999999865 344443332 233444555444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=3.8e-24 Score=195.93 Aligned_cols=209 Identities=24% Similarity=0.313 Sum_probs=152.4
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.+++++++++.+.. +|... ...++.++|+.|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccc-cCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 57889999998854 44433 24667899999999988888999999999999999999988899999999999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCc--------------------------ccCCCCCCCCEEECCCCcCCCC
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIP--------------------------LPLGNLTNLVVLELSDNKLSGL 280 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~ 280 (365)
|.++ .+|..+. ++|++|++++|.+.+..+ ..+..+++|++|++++|.++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9887 3443332 345555555555544333 344445555555555555543
Q ss_pred CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 281 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhcc
Confidence 222222 5666777777777666677788888888888888888866566777776 6889999998888 78888888
Q ss_pred CCCCC
Q 045705 361 HSSLV 365 (365)
Q Consensus 361 l~~L~ 365 (365)
+++|+
T Consensus 262 l~~L~ 266 (330)
T 1xku_A 262 HKYIQ 266 (330)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 87763
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.1e-24 Score=187.92 Aligned_cols=190 Identities=26% Similarity=0.233 Sum_probs=167.4
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
+.++++.++++. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 568888888884 555443 68999999999999888889999999999999999999766677899999999999999
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL 331 (365)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 331 (365)
.+.+..+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 99977777889999999999999999998888899999999999999999888777899999999999999999965555
Q ss_pred HhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 332 SLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 332 ~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..++ +|++|++++|++++..+..+..+++|.
T Consensus 176 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 176 AFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HhccCC-CcCEEECCCCcCCcCCHHHhccccCCC
Confidence 677777 799999999999976666788888763
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=7.3e-25 Score=224.68 Aligned_cols=207 Identities=20% Similarity=0.178 Sum_probs=140.7
Q ss_pred cccceeeeccCCCCCCCcchhh-hc-cccccceecccccccccchhhhhCC--CCCcEEEeeCCcCCCccCcCCCCCCC-
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEA-HV-TWPTWLLYLDINAISGSILDEIRSL--KSLFNLRLGDNTLSGSIPLSLGNLTN- 218 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~-~~-~~~~~~l~L~~n~l~~~~~~~~~~l--~~L~~L~ls~n~i~~~~~~~~~~l~~- 218 (365)
..+.|++||+++|.+.+..+.. +. ...++.++|+.|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 3445667777777665554322 21 2245566666677666666666555 66777777777776666655555544
Q ss_pred -----CcEEEcccCcCCCcchhhhcC--------------------------------------CCCCCEEEcccCcCCC
Q 045705 219 -----LATLYLDSNALSGSILNEIGN--------------------------------------LKSLYYLELTSNTLSG 255 (365)
Q Consensus 219 -----L~~L~Ls~n~l~~~~~~~l~~--------------------------------------l~~L~~L~L~~n~l~~ 255 (365)
|++|++++|.+++..+..+.. .++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 777888777665444433221 2567777787777776
Q ss_pred CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhh
Q 045705 256 SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335 (365)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 335 (365)
..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 66777777788888888888887777777777788888888888877777777777888888888888877555555656
Q ss_pred ccCCCcEEEccCcccc
Q 045705 336 LTNSLEVVCLSSNHIV 351 (365)
Q Consensus 336 ~~~~L~~L~l~~n~l~ 351 (365)
++ +|+.|++++|.++
T Consensus 361 l~-~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 361 LE-KLQTLDLRDNALT 375 (844)
T ss_dssp CC-CCCEEEEETCCSC
T ss_pred CC-CCCEEECCCCCCC
Confidence 66 6888888888777
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.4e-24 Score=210.24 Aligned_cols=217 Identities=20% Similarity=0.168 Sum_probs=173.6
Q ss_pred ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
...++.+++++|.+....+..+.. ..++.++|+.|.+++..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 346889999999985544433332 4678899999999998888999999999999999999998888999999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCc--------------------
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPP-------------------- 283 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------- 283 (365)
+++|.+++..+..|+.+++|++|++++|.+.+..|..++.+++|++|++++|.+++....
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 999999966666689999999999999999988888899999999999999988754221
Q ss_pred ---------------------------------------cCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCc
Q 045705 284 ---------------------------------------SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK 324 (365)
Q Consensus 284 ---------------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 324 (365)
.+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 24455667777777777766667777777777777777777
Q ss_pred CCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 325 LNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 325 l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
++ .+|..+..++ +|+.|++++|.++ .+|..+..+++|
T Consensus 290 l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 290 LV-ALNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp CC-EEECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred CC-CCCcccccCC-CCcEEECCCCCCC-ccCcccccCCCC
Confidence 77 4555555555 6777777777777 677777766665
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-23 Score=187.29 Aligned_cols=203 Identities=26% Similarity=0.250 Sum_probs=174.8
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.+..+++..+.+.+.... .....++.++++.|.++. ...+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECH-HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCccccccccc-ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 355677777777555432 223356778888888874 34588899999999999999863 4788999999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 99998888889999999999999999998777788999999999999999998888889999999999999999998888
Q ss_pred hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
..+..+++|++|++++|.+++..+..+..++ +|+.|++++|++++..|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence 8889999999999999999977776677787 79999999999997766
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.9e-24 Score=213.86 Aligned_cols=211 Identities=22% Similarity=0.189 Sum_probs=187.7
Q ss_pred ccccceeeeccCCCCCCCcc--hhhhc-cccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCC
Q 045705 143 MFSMLFHVLDFPHTAYSDSM--EEAHV-TWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTN 218 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~--~~~~~-~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~ 218 (365)
...+.|+.|++++|.+.+.. +..+. ...++.++++.|.+++ +|..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 34567999999999987653 33333 3467889999999886 55888999999999999999998877 68999999
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 9999999999998889999999999999999999987 478889999999999999999999999999999999999999
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
+|++++..|..+..+++|++|+|++|+++ .+|..+..++.+|++|++++|++....+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999999999 8888888887569999999999986544
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.9e-23 Score=183.87 Aligned_cols=179 Identities=23% Similarity=0.212 Sum_probs=161.1
Q ss_pred ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250 (365)
Q Consensus 171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 250 (365)
.+.++++.+.++. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3567888888874 555443 6899999999999998888999999999999999999988888899999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330 (365)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 330 (365)
|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99998777888999999999999999998888889999999999999999988878889999999999999999996666
Q ss_pred hHhhhccCCCcEEEccCcccccc
Q 045705 331 LSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 331 ~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
..+..++ +|+.|++++|++++.
T Consensus 173 ~~~~~l~-~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLG-KLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCT-TCCEEECCSCCBCTT
T ss_pred HHHhCCC-CCCEEEeeCCceeCC
Confidence 6777777 799999999999865
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.3e-24 Score=206.85 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=53.9
Q ss_pred cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC--CchhHhhhccCCCcEEEccCccccccCChh-hhcCC
Q 045705 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG--SIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHS 362 (365)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~ 362 (365)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..++ +|++|++++|.+++.+|.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCc
Confidence 455667777777777776667777777777777777777774 4455666666 6778888888777656653 55555
Q ss_pred CC
Q 045705 363 SL 364 (365)
Q Consensus 363 ~L 364 (365)
+|
T Consensus 400 ~L 401 (520)
T 2z7x_B 400 SL 401 (520)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=220.22 Aligned_cols=223 Identities=25% Similarity=0.232 Sum_probs=150.0
Q ss_pred ccccccceeeeccCCCCCCCcch-hhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcC--CCCC
Q 045705 141 SVMFSMLFHVLDFPHTAYSDSME-EAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS--LGNL 216 (365)
Q Consensus 141 ~~~~~~~L~~L~ls~n~l~~~~~-~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~--~~~l 216 (365)
.+...+.|++||+++|...+.++ ..+.. ..++.++|+.|.+.+..|..|.++++|++|++++|.+++..+.. +.++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 34556689999999997666663 33333 35788999999999888999999999999999999998766554 8899
Q ss_pred CCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCC--CC---------------------------
Q 045705 217 TNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNL--TN--------------------------- 266 (365)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~--------------------------- 266 (365)
++|++|++++|.+.+..+ ..|+.+++|++|++++|.+.+..+..+..+ ++
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 999999999999986654 578999999999999998876544433211 11
Q ss_pred ---CCEEECCCC--------------------------------------------------------------cCCCCC
Q 045705 267 ---LVVLELSDN--------------------------------------------------------------KLSGLI 281 (365)
Q Consensus 267 ---L~~L~L~~n--------------------------------------------------------------~l~~~~ 281 (365)
|+.|++++| .+.+..
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 344444444 333333
Q ss_pred CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705 282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH 361 (365)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l 361 (365)
+..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..+..++ +|+.|++++|.+++..+..+..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCC
Confidence 44455555555555555555555555555556666666666666544455555555 46666666666655445555555
Q ss_pred CCC
Q 045705 362 SSL 364 (365)
Q Consensus 362 ~~L 364 (365)
++|
T Consensus 362 ~~L 364 (844)
T 3j0a_A 362 EKL 364 (844)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=6.2e-25 Score=215.63 Aligned_cols=185 Identities=23% Similarity=0.198 Sum_probs=137.6
Q ss_pred cccceecccccccccc--hhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEE
Q 045705 170 PTWLLYLDINAISGSI--LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYL 246 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 246 (365)
.++.++++.|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4556677777776543 66677777888888888877744443 7777888888888887765544 457777888888
Q ss_pred EcccCcCCCCCcccCCCCCCCCEEECCCCcCC-CCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcC
Q 045705 247 ELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL 325 (365)
Q Consensus 247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l 325 (365)
++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 88888877777777777888888888888776 45677777888888888888888777777778888888888888888
Q ss_pred CCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705 326 NGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL 356 (365)
Q Consensus 326 ~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~ 356 (365)
++..|..+..++ +|+.|++++|++++..|.
T Consensus 507 ~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 507 KSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred CCCCHHHhhccc-CCcEEEecCCcccCCCcc
Confidence 766666666666 688888888888776663
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-24 Score=207.43 Aligned_cols=205 Identities=21% Similarity=0.137 Sum_probs=102.3
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS------------------- 206 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~------------------- 206 (365)
.|+.|+|++|.+.+..|..+.. ..++.++|+.|.+++..| +..+++|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 4555555555554444433322 234445555555554333 455555555555555554
Q ss_pred CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC-CCCCCCEEECCCCcCCCCCCccC
Q 045705 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG-NLTNLVVLELSDNKLSGLIPPSF 285 (365)
Q Consensus 207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l 285 (365)
+..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++. ..+
T Consensus 113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~ 187 (487)
T 3oja_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ 187 (487)
T ss_dssp CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--ccc
Confidence 33222 234455555555555554455555555555555555555544444443 455555555555555543 122
Q ss_pred cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcC
Q 045705 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKH 361 (365)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l 361 (365)
..+++|+.|+|++|.+++..+ .+..+++|+.|+|++|.++ .+|..+..++ +|+.|++++|+++ +.+|..+..+
T Consensus 188 ~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCC-CCCEEEcCCCCCcCcchHHHHHhC
Confidence 235555555555555544322 2455555555555555555 3454444444 4555555555555 4444444443
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-24 Score=195.42 Aligned_cols=206 Identities=21% Similarity=0.140 Sum_probs=115.3
Q ss_pred ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS------------------- 206 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~------------------- 206 (365)
.|++||+++|.+.+..+..+.. ..++.++|+.|.+++..+ +..+++|++|++++|.++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence 4555555555554444333322 234455555555554333 455555555555555544
Q ss_pred CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC-CCCCCCCEEECCCCcCCCCCCccC
Q 045705 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSDNKLSGLIPPSF 285 (365)
Q Consensus 207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l 285 (365)
+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. ...
T Consensus 113 ~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~ 187 (317)
T 3o53_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ 187 (317)
T ss_dssp EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccc
Confidence 33222 24456666666666665555566666666666666666665444444 2456666666666666644 222
Q ss_pred cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcCC
Q 045705 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKHS 362 (365)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l~ 362 (365)
..+++|++|++++|.+++. +..+..+++|++|+|++|.++ .+|..+..++ +|+.|++++|+++ +.+|..+..++
T Consensus 188 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC-CCCEEEccCCCccCcCHHHHHhccc
Confidence 2356666666666666543 333666666666666666666 5565555555 5666666666666 55555555544
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.7e-24 Score=186.26 Aligned_cols=189 Identities=18% Similarity=0.166 Sum_probs=107.2
Q ss_pred cccceecccccccccchhhhhCCCCCcEEEeeCCc-CCCccCcCCCCCCCCcEEEccc-CcCCCcchhhhcCCCCCCEEE
Q 045705 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNT-LSGSIPLSLGNLTNLATLYLDS-NALSGSILNEIGNLKSLYYLE 247 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~ 247 (365)
.++.++++.|++++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34455555555555555556666666666666665 5544445566666666666665 666644445566666666666
Q ss_pred cccCcCCCCCcccCCCCCCCC---EEECCCC-cCCCCCCccCcCCCccc-eEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705 248 LTSNTLSGSIPLPLGNLTNLV---VLELSDN-KLSGLIPPSFGNLTNLT-TLYVYKNSIFGSILDEIGNLKSLSNINLSL 322 (365)
Q Consensus 248 L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 322 (365)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.+....+..+.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666663 443 55555555 6666666 66655555566666666 6666666665333333433 5666666666
Q ss_pred Cc-CCCCchhHhhhc-cCCCcEEEccCccccccCChhhhcCC
Q 045705 323 NK-LNGSIPLSLTNL-TNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 323 N~-l~~~~p~~l~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
|+ +++..+..+..+ + +|+.|++++|++++..+..+.+++
T Consensus 189 n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp CTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCTTCTTCS
T ss_pred CCCcccCCHHHhhcccc-CCcEEECCCCccccCChhHhccCc
Confidence 63 652223344444 4 566666666666633333344433
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.8e-23 Score=205.03 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=72.0
Q ss_pred cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
+.+++||+++|.+.+..+..+.. ..++.++|+.|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46777777777776665544433 25666777777777777777777777777777777777 44444 6777777777
Q ss_pred ccCcCCCc-chhhhcCCCCCCEEEcccCcCC
Q 045705 225 DSNALSGS-ILNEIGNLKSLYYLELTSNTLS 254 (365)
Q Consensus 225 s~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 254 (365)
++|.+++. .|..|+.+++|++|++++|.+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 77777642 3466777777777777777665
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.3e-23 Score=184.80 Aligned_cols=186 Identities=26% Similarity=0.311 Sum_probs=163.0
Q ss_pred cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 249 (365)
.++.++++.++++. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++. +.. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECC
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECC
Confidence 34668888899884 454443 6899999999999988889999999999999999999853 333 789999999999
Q ss_pred cCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI 329 (365)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 329 (365)
+|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|+.|+|++|+++ .+
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence 99998 77888999999999999999999888889999999999999999999888888999999999999999999 55
Q ss_pred hhH-hhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 330 PLS-LTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 330 p~~-l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
|.. +..++ +|+.|++++|+++ .+|..+..+++|
T Consensus 164 ~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 164 PAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp CTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred CHHHhcCcC-CCCEEECCCCcCC-ccChhhcccccC
Confidence 544 45576 7999999999999 889888887765
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=185.46 Aligned_cols=207 Identities=24% Similarity=0.279 Sum_probs=143.4
Q ss_pred ccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
...+.|+.|++++|.....++.......++.++++.|.+....+ +..+++|+.|++++|.+.+..+ +..+++|++|
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 204 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcccee
Confidence 34446777777777554555443333455667777777665443 6677777777777777774433 6677777777
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 302 (365)
++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence 777777764433 67777888888888877743 33 67777888888888877754 45777778888888888776
Q ss_pred CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
+. ..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..| +..+++|
T Consensus 279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hhhhhcc
Confidence 54 4567777888888888888777777777776 68888888888876555 6666655
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=193.97 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=141.0
Q ss_pred ceeeeccCCCCCCCcchhhhc---cccccceecccccccccch----hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705 147 LFHVLDFPHTAYSDSMEEAHV---TWPTWLLYLDINAISGSIL----DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL 219 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~---~~~~~~l~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L 219 (365)
.|+.|++++|.+.+..|..+. ...++.++|+.|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 478888888888777776542 3356777888888876443 344567788888888888887777788888888
Q ss_pred cEEEcccCcCCCc--ch--hhhcCCCCCCEEEcccCcCCCCCcc----cCCCCCCCCEEECCCCcCCCCCCccCcCC---
Q 045705 220 ATLYLDSNALSGS--IL--NEIGNLKSLYYLELTSNTLSGSIPL----PLGNLTNLVVLELSDNKLSGLIPPSFGNL--- 288 (365)
Q Consensus 220 ~~L~Ls~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--- 288 (365)
++|++++|++.+. ++ ..+..+++|++|++++|.++ .++. .++.+++|++|++++|.+++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 8888888876532 22 22357778888888888876 3333 24567788888888888887767666665
Q ss_pred CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 289 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
++|++|++++|.++ .+|..+. ++|++|+|++|++++ +|. +..++ +|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~-~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELP-EVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCC-CCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCC-CccEEECcCCCCCC
Confidence 58888888888886 4455553 688888888888884 333 34555 68888888888763
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=190.40 Aligned_cols=211 Identities=18% Similarity=0.139 Sum_probs=167.6
Q ss_pred ceeeeccCCCCCCCcc----hhhhccccccceecccccccccchhhh--hCCCCCcEEEeeCCcCCCccC----cCCCCC
Q 045705 147 LFHVLDFPHTAYSDSM----EEAHVTWPTWLLYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIP----LSLGNL 216 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~----~~~~~~~~~~~l~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~----~~~~~l 216 (365)
.++.+++.++.+.... ........++.++++.|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3566777776664321 112222347889999999999999888 889999999999999997544 345678
Q ss_pred CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC--C--cccCCCCCCCCEEECCCCcCCCCCCc----cCcCC
Q 045705 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS--I--PLPLGNLTNLVVLELSDNKLSGLIPP----SFGNL 288 (365)
Q Consensus 217 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l 288 (365)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..++.+++|++|++++|.++.. +. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcC
Confidence 9999999999999988889999999999999999998642 2 23346889999999999999743 22 35678
Q ss_pred CccceEEeeccccCCcchhhcCCC---CCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 289 TNLTTLYVYKNSIFGSILDEIGNL---KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 289 ~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
++|++|+|++|.+.+..|..+..+ ++|++|+|++|.++ .+|..+. + +|++|++++|++++ +|. +..+++|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~-~~~-~~~l~~L 296 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNR-APQ-PDELPEV 296 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCC-Cch-hhhCCCc
Confidence 999999999999988878777766 69999999999999 7887664 3 79999999999995 343 4555554
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.1e-23 Score=205.95 Aligned_cols=160 Identities=21% Similarity=0.120 Sum_probs=88.4
Q ss_pred cccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCc-cCcCCCCCCCCcE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGS-IPLSLGNLTNLAT 221 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~ 221 (365)
..+.|++|++++|.+.+..|..+.. ..++.++|+.|.+++..+..|+.+++|++|++++|.+++. .|..+.++++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 3445566666666555444433322 2445555556666555555555666666666666665542 3445555666666
Q ss_pred EEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705 222 LYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 222 L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 300 (365)
|++++|.+.+.+| ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 6666665322332 455556666666666666655555555556666666666655543222222346777778887777
Q ss_pred cCC
Q 045705 301 IFG 303 (365)
Q Consensus 301 l~~ 303 (365)
+.+
T Consensus 208 l~~ 210 (549)
T 2z81_A 208 LAR 210 (549)
T ss_dssp CTT
T ss_pred ccc
Confidence 655
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=5e-23 Score=175.82 Aligned_cols=162 Identities=27% Similarity=0.274 Sum_probs=102.0
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 272 (365)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35666666666666555555666666666666666666544555566666666666666666544445566666666666
Q ss_pred CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..| +|+.|+++.|.++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT--------TTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC--------CHHHHHHHHHhCCc
Confidence 6666665555556666666666666666665555556666666666666666653322 46666666666666
Q ss_pred cCChhhhcCC
Q 045705 353 EIPLELRKHS 362 (365)
Q Consensus 353 ~~p~~l~~l~ 362 (365)
.+|.+++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6666666554
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=204.89 Aligned_cols=213 Identities=22% Similarity=0.180 Sum_probs=185.0
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCcc--CcCCCCCCCCcEEEc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSI--PLSLGNLTNLATLYL 224 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~--~~~~~~l~~L~~L~L 224 (365)
.|+.|++++|.+. .+|.. ....++.++++.|.+.+..+. ..+++|++|++++|.+++.. +..+.++++|++|++
T Consensus 305 ~L~~L~l~~n~~~-~l~~~-~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPTL-KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CCSEEEEESCBCS-SCCBC-BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred CccEEeeccCccc-ccCcc-cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 7899999999996 55542 334567888999988876655 77899999999999998554 677889999999999
Q ss_pred ccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC-
Q 045705 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF- 302 (365)
Q Consensus 225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 302 (365)
++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 381 ~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 381 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp CSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 99999854 4449999999999999999987655 56889999999999999999888999999999999999999997
Q ss_pred CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..|..+.++++|+
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccchhhhhcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 46788999999999999999999977788888888 799999999999988888899988874
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.9e-23 Score=181.20 Aligned_cols=198 Identities=18% Similarity=0.194 Sum_probs=169.0
Q ss_pred ccceeeeccCCCCCCCcchhhhcc-ccccceeccccc-ccccchhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcE
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINA-ISGSILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~-l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~ 221 (365)
...++.|++++|.+.+..+..+.. ..++.++++.|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 347999999999997666544433 367889999997 8877778999999999999999 9999777788999999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCC---EEEcccC-cCCCCCcccCCCCCCCC-EEECCCCcCCCCCCccCcCCCccceEEe
Q 045705 222 LYLDSNALSGSILNEIGNLKSLY---YLELTSN-TLSGSIPLPLGNLTNLV-VLELSDNKLSGLIPPSFGNLTNLTTLYV 296 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L 296 (365)
|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++...+..+.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999999985 665 88899998 9999999 99877777799999999 9999999999555556665 89999999
Q ss_pred eccc-cCCcchhhcCCC-CCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705 297 YKNS-IFGSILDEIGNL-KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349 (365)
Q Consensus 297 ~~n~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~ 349 (365)
++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+. +|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~-~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLE-HLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCT-TCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--Hhc-cCceeeccCcc
Confidence 9995 987778889999 99999999999999 66654 455 79999999874
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-22 Score=193.98 Aligned_cols=191 Identities=28% Similarity=0.371 Sum_probs=110.2
Q ss_pred cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
+.|+.|++++|.+.+..+ ......++.++++.|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 345555555555544333 11222344455555555532 245555666666666666654433 5556666666666
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 305 (365)
+|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|.+.+.
T Consensus 274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 666654332 5566666666666666664322 5566666666666666665533 55666666666666666554
Q ss_pred hhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 306 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
..+..+++|+.|++++|++++..| +..++ +|+.|++++|++++
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccC
Confidence 356666677777777777765554 55555 57777777776664
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.1e-22 Score=182.50 Aligned_cols=193 Identities=26% Similarity=0.311 Sum_probs=162.6
Q ss_pred cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
..+.|+.|++++|.+.. ++.......++.++|+.|.+++..+ +..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 34579999999999865 4544444577889999999987655 89999999999999999854 3 688999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 999999863 3 38999999999999999985433 8889999999999999986533 8899999999999999976
Q ss_pred cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
..+ +..+++|++|++++|.+++. + .+..++ +|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDV-S-PLANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCT-TCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcc-c-cccCCC-CCCEEEccCCeeec
Confidence 644 78899999999999999954 4 367777 79999999999984
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.2e-24 Score=204.50 Aligned_cols=193 Identities=19% Similarity=0.150 Sum_probs=164.1
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++||+++|.+.+..+. ..++.++++.|.+++..+. .+++|+.|++++|.+++..|..+.++++|++
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 44556788899999888654332 4667888999999877664 4588999999999999988999999999999
Q ss_pred EEcccCcCCCcchhhhc-CCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705 222 LYLDSNALSGSILNEIG-NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 300 (365)
|++++|.+++..|..+. .+++|++|+|++|.+++. + ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCc
Confidence 99999999988888886 799999999999999965 3 34468999999999999997544 58899999999999999
Q ss_pred cCCcchhhcCCCCCCCeEECcCCcCC-CCchhHhhhccCCCcEEEcc
Q 045705 301 IFGSILDEIGNLKSLSNINLSLNKLN-GSIPLSLTNLTNSLEVVCLS 346 (365)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~~~~~L~~L~l~ 346 (365)
+++ +|..+..+++|+.|++++|.+. +.+|..+..++ .|+.++++
T Consensus 226 l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~-~L~~l~~~ 270 (487)
T 3oja_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQ 270 (487)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH-HHHHHHHH
T ss_pred Ccc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC-CCcEEecc
Confidence 975 6777899999999999999998 67778888777 68888886
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=6e-24 Score=193.55 Aligned_cols=204 Identities=19% Similarity=0.161 Sum_probs=169.7
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+..+ ...++.++++.|.+++..+.. +++|+.|++++|.+++..+..+..+++|++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 4455678899999998865432 246678888999998766543 578999999999999888889999999999
Q ss_pred EEcccCcCCCcchhhh-cCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705 222 LYLDSNALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 300 (365)
|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence 9999999997777777 4789999999999999854 33 34589999999999999965 4458899999999999999
Q ss_pred cCCcchhhcCCCCCCCeEECcCCcCC-CCchhHhhhccCCCcEEEccCc-cccccCChh
Q 045705 301 IFGSILDEIGNLKSLSNINLSLNKLN-GSIPLSLTNLTNSLEVVCLSSN-HIVGEIPLE 357 (365)
Q Consensus 301 l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~~~~~L~~L~l~~n-~l~~~~p~~ 357 (365)
+. .+|..+..+++|+.|++++|+++ +.+|..+..++ .|+.|+++++ .++|..|..
T Consensus 226 l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHHHSSSSCC
T ss_pred cc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhccCCchhc
Confidence 96 46778999999999999999999 77888888888 7999999954 566665543
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.1e-22 Score=198.86 Aligned_cols=213 Identities=21% Similarity=0.170 Sum_probs=155.6
Q ss_pred cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
+.+++||+++|.+.+..|..+.. ..++.++|+.|.+++..|..|..+++|++|++++|.+++..+..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 56888888888887665554433 35677888888888777788888888888888888888776666888888888888
Q ss_pred ccCcCCC-cchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705 225 DSNALSG-SILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302 (365)
Q Consensus 225 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 302 (365)
++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 8888875 245677888888888888887443443 56778888888888888888777888888888888888888774
Q ss_pred CcchhhcCCCCCCCeEECcCCcCCCCc--hhHhhhccCCCcEEEccCccccccCChhh
Q 045705 303 GSILDEIGNLKSLSNINLSLNKLNGSI--PLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358 (365)
Q Consensus 303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~--p~~l~~~~~~L~~L~l~~n~l~~~~p~~l 358 (365)
......+..+++|++|++++|.+++.. |..+.....+|+.|++++|.+++..+..+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 433333456788888888888887531 22222323368888888888876655444
No 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1e-21 Score=180.88 Aligned_cols=209 Identities=24% Similarity=0.317 Sum_probs=171.9
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+..+ ......++.++++.|......+ .+..+++|++|++++|.+.+..+ +..+++|++
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 3445579999999999866543 3334467778888886554443 48889999999999999985544 788999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 9999999985433 8889999999999999985443 7889999999999999986643 88999999999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+. ..+..+++|++|++++|.+++ ++ .+..++ +|+.|++++|++++..|..++++++|+
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCC-CCCEEECcCCcCCCcChhHhhccccCC
Confidence 764 578899999999999999994 44 466777 799999999999999999999998874
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=9.9e-22 Score=188.33 Aligned_cols=206 Identities=30% Similarity=0.322 Sum_probs=173.8
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+. +.......++.++++.|.+.+..+ ++.+++|+.|++++|.+++. ..+..+++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 247 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 247 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCE
Confidence 44556899999999998654 333333467889999999987666 77899999999999999854 46788999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 9999999986554 8899999999999999996543 8899999999999999997643 88999999999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
.+..+ +..+++|+.|++++|.+++. ..+..++ +|+.|++++|++++..| +..+++|.
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT-NINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCC-CCCEEeCCCCccCccch--hhcCCCCC
Confidence 88765 77899999999999999954 3677777 79999999999998777 78887763
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.2e-22 Score=170.11 Aligned_cols=195 Identities=22% Similarity=0.179 Sum_probs=156.7
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 229 (365)
.++.+++.+.. +|... ...++.++++.|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~-~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccC-CCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34555555532 22222 22456677778888777777788999999999999999977777789999999999999999
Q ss_pred CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI 309 (365)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 309 (365)
++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 97777778999999999999999997777778999999999999999998877789999999999999997753
Q ss_pred CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhh
Q 045705 310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358 (365)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l 358 (365)
.++.|+.|+++.|.++|.+|..++.++. +...|...+..+..+
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip~~~~~l~~-----~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVRNSAGSVAP-----DSAKCSGSGKPVRSI 205 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBBCTTSSBCT-----TCSBBTTTCCBGGGC
T ss_pred -CCCCHHHHHHHHHhCCceeeccCccccC-----CccccccCCCcceee
Confidence 4668999999999999999998887763 444555554444443
No 76
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.7e-21 Score=189.63 Aligned_cols=188 Identities=24% Similarity=0.256 Sum_probs=158.3
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.++.|++++|.+.+ +|.... ..++.++|+.|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 68999999999976 565443 56788999999999 456 457999999999999996 666 655 999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|+.|+|++|.++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99986 665 68999999999999995 555 57899999999999997 555 66 89999999999997 445
Q ss_pred hhcCCCCCC-------CeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705 307 DEIGNLKSL-------SNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 307 ~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
. +.. +| +.|+|++|.|+ .+|..++.++ +|+.|++++|++++.+|..+.++.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5 554 77 99999999999 7999998887 799999999999999999888753
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.7e-21 Score=184.39 Aligned_cols=199 Identities=21% Similarity=0.274 Sum_probs=101.8
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+ +|... ..++.++++.|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 4445567777777777754 33322 255667777777775 34 46677777777777776664 2221 134555
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC-----------------CCCCCCEEECCCCcCCC--CCC
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----------------NLTNLVVLELSDNKLSG--LIP 282 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----------------~l~~L~~L~L~~n~l~~--~~~ 282 (365)
|++++|.+. .+| .++.+++|++|++++|++.+ +|..+. .+++|++|++++|.+++ ..|
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~ 296 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 296 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC
Confidence 555555554 334 25555555555555555542 222110 11334444444444443 111
Q ss_pred ccCc-------------CC-CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705 283 PSFG-------------NL-TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348 (365)
Q Consensus 283 ~~l~-------------~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n 348 (365)
..+. .+ ++|+.|++++|++.+ +|.. +++|++|++++|.++ .+|. .++ +|++|++++|
T Consensus 297 ~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-~L~~L~L~~N 367 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-NLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSS
T ss_pred CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-hccEEECCCC
Confidence 1111 11 245555555555543 2221 345566666666665 4444 122 5666666666
Q ss_pred cccc--cCChhhhcC
Q 045705 349 HIVG--EIPLELRKH 361 (365)
Q Consensus 349 ~l~~--~~p~~l~~l 361 (365)
++++ .+|.+++++
T Consensus 368 ~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 368 PLREFPDIPESVEDL 382 (454)
T ss_dssp CCSSCCCCCTTCCEE
T ss_pred CCCcCCCChHHHHhh
Confidence 6665 556555544
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1e-20 Score=180.51 Aligned_cols=198 Identities=21% Similarity=0.127 Sum_probs=148.1
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+. + ......++.++++.|.+++. + ++.+++|++|++++|.+++. + ++.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred hcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCE
Confidence 44556778888888877664 2 22223566777777877764 2 67778888888888888753 3 777788888
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++. | ++.+++|+.|++++|.+
T Consensus 132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCC
T ss_pred EECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcC
Confidence 88888888753 2677788888888888555444 467788889999999988874 3 77888999999999988
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
++. .+..+++|+.|++++|++++ +| +..++ +|+.|++++|++++..+..+.++.
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCC
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCC
Confidence 765 37888999999999999995 66 66776 799999999999976655555544
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.9e-23 Score=195.50 Aligned_cols=213 Identities=18% Similarity=0.216 Sum_probs=146.4
Q ss_pred cccccceeeeccCCCC---CCCcchhhh--------ccccccceecccccccc----cchhhhhCCCCCcEEEeeCCcCC
Q 045705 142 VMFSMLFHVLDFPHTA---YSDSMEEAH--------VTWPTWLLYLDINAISG----SILDEIRSLKSLFNLRLGDNTLS 206 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~---l~~~~~~~~--------~~~~~~~l~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~i~ 206 (365)
+...+.|++|+|++|. +.+.+|... ....++.++|+.|.++. .++..+..+++|++|++++|.++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 3445678888888754 333444333 22356677888888876 46667777888888888888876
Q ss_pred CccCcCCC----CC---------CCCcEEEcccCcCC-Ccch---hhhcCCCCCCEEEcccCcCCC-----CCcccCCCC
Q 045705 207 GSIPLSLG----NL---------TNLATLYLDSNALS-GSIL---NEIGNLKSLYYLELTSNTLSG-----SIPLPLGNL 264 (365)
Q Consensus 207 ~~~~~~~~----~l---------~~L~~L~Ls~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l 264 (365)
...+..+. .+ ++|++|++++|.++ ..++ ..+..+++|++|++++|.+.. ..+..+..+
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~ 215 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence 43333332 23 78888888888876 3334 456677888888888887762 233366777
Q ss_pred CCCCEEECCCCcCC----CCCCccCcCCCccceEEeeccccCCc----chhhc--CCCCCCCeEECcCCcCCC----Cch
Q 045705 265 TNLVVLELSDNKLS----GLIPPSFGNLTNLTTLYVYKNSIFGS----ILDEI--GNLKSLSNINLSLNKLNG----SIP 330 (365)
Q Consensus 265 ~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~L~~N~l~~----~~p 330 (365)
++|+.|++++|.++ ..+|..+..+++|+.|+|++|.+.+. ++..+ ..+++|++|+|++|.+++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 88888888888875 44566777788888888888887664 45555 337888888888888885 377
Q ss_pred hHhh-hccCCCcEEEccCccccccCC
Q 045705 331 LSLT-NLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 331 ~~l~-~~~~~L~~L~l~~n~l~~~~p 355 (365)
..+. .++ +|++|++++|++++..|
T Consensus 296 ~~l~~~l~-~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 296 TVIDEKMP-DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHCT-TCCEEECTTSBSCTTSH
T ss_pred HHHHhcCC-CceEEEccCCcCCcchh
Confidence 7763 355 68888888888886553
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=3.2e-21 Score=183.88 Aligned_cols=198 Identities=21% Similarity=0.298 Sum_probs=119.2
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|+.|++++|.+.+ +|... ..++.++++.|.++ .+| .++.+++|++|++++|.+++ +|.. +++|++
T Consensus 191 ~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 261 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEA 261 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCE
T ss_pred ccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCE
Confidence 3445567777888877765 33221 35567777788777 455 37778888888888888874 3432 356777
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccC-------------CCC-CCCCEEECCCCcCCCCCCccC
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPL-------------GNL-TNLVVLELSDNKLSGLIPPSF 285 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~-------------~~l-~~L~~L~L~~n~l~~~~~~~l 285 (365)
|++++|.+++ +|.. .++|++|++++|.+++ ..|..+ ..+ ++|++|++++|.+++ +|..
T Consensus 262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 262 LNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-
T ss_pred EECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-
Confidence 7777777764 3432 2556666666666654 222111 122 478899999998886 4443
Q ss_pred cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC--CchhHhhhc-------------cCCCcEEEccCccc
Q 045705 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG--SIPLSLTNL-------------TNSLEVVCLSSNHI 350 (365)
Q Consensus 286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~~-------------~~~L~~L~l~~n~l 350 (365)
+++|+.|++++|.++. +|. .+++|++|++++|++++ .+|..+..+ + +|+.|++++|++
T Consensus 336 --~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l 408 (454)
T 1jl5_A 336 --PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNPL 408 (454)
T ss_dssp --CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred --CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC-cCCEEECCCCcC
Confidence 5889999999999975 454 47899999999999998 788887766 5 799999999999
Q ss_pred cc--cCChhhhcC
Q 045705 351 VG--EIPLELRKH 361 (365)
Q Consensus 351 ~~--~~p~~l~~l 361 (365)
++ .+|.++..+
T Consensus 409 ~~~~~iP~sl~~L 421 (454)
T 1jl5_A 409 REFPDIPESVEDL 421 (454)
T ss_dssp -------------
T ss_pred CccccchhhHhhe
Confidence 97 888887765
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.3e-20 Score=179.96 Aligned_cols=202 Identities=17% Similarity=0.123 Sum_probs=156.4
Q ss_pred cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT 221 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~ 221 (365)
+...+.|++|++++|.+.+. + ......++.++++.|.+++. + ++.+++|++|++++|.+++. .++.+++|++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCE
T ss_pred cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCE
Confidence 45566899999999999774 3 22234677889999999874 3 78899999999999999964 3788999999
Q ss_pred EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|+.|++++|++
T Consensus 153 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 153 LDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp EECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred EECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence 999999654444 57889999999999999986 44 78889999999999999875 488899999999999999
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhcc------CCCcEEEccCccccccCChhhhcCCCC
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT------NSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~------~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
++. | +..+++|+.|++++|.+++..+..+..+. ++|+.|++++|.+.+.+| ++.|++|
T Consensus 225 ~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 225 TEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp SCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred ccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccC
Confidence 774 4 78889999999999999965433332221 135566677777666666 3445544
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.1e-20 Score=171.20 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=162.2
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 229 (365)
.+.+..+.+.+..... .-..++.++++.|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 23 ~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEECHH-HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCceecHH-HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3456666665543322 223567889999998853 3 68899999999999999996554 89999999999999999
Q ss_pred CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI 309 (365)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 309 (365)
++ + ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +
T Consensus 98 ~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 98 KN-V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp SC-C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CC-c-hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 85 3 479999999999999999985 44 38899999999999999987643 8899999999999999976544 8
Q ss_pred CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
..+++|+.|++++|.+++ ++. +..++ +|+.|++++|++++.. .+..+++|+
T Consensus 170 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISD-ISP-LASLP-NLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp TTCTTCCEEECCSSCCCC-CGG-GGGCT-TCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred cCCCCCCEEECCCCccCc-Chh-hcCCC-CCCEEEccCCccCccc--cccCCCCCC
Confidence 899999999999999994 443 67777 7999999999999554 378888774
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.3e-22 Score=185.97 Aligned_cols=213 Identities=17% Similarity=0.182 Sum_probs=163.8
Q ss_pred cccceeeeccCCCCCCCc-chhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCC-cCCCc-cCcCCCCCCCC
Q 045705 144 FSMLFHVLDFPHTAYSDS-MEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDN-TLSGS-IPLSLGNLTNL 219 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~-~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~i~~~-~~~~~~~l~~L 219 (365)
..+.|+.|++++|.+.+. ++..... ..++.++++.|.+++..+..++.+++|++|++++| .+++. ++..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 456789999999988655 5544333 36778888999988888888888999999999998 67642 56667788999
Q ss_pred cEEEcccC-cCCCc-chhhhcCCC-CCCEEEcccC--cCC-CCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCCCccc
Q 045705 220 ATLYLDSN-ALSGS-ILNEIGNLK-SLYYLELTSN--TLS-GSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNLTNLT 292 (365)
Q Consensus 220 ~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 292 (365)
++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 99999999 88754 567788888 9999999999 444 3456667788999999999998 6666777888899999
Q ss_pred eEEeeccc-cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705 293 TLYVYKNS-IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360 (365)
Q Consensus 293 ~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~ 360 (365)
+|++++|. +.+.....+..+++|+.|++++| ++...-..+. .+++.|++++|++++..|..+++
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCSS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccccCCcccc
Confidence 99999984 43333346788899999999999 6543333332 24667789999999988887764
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.4e-22 Score=185.73 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=160.1
Q ss_pred cceeeeccCCCCCCCcchhhhccccccceeccccccccc-chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGS-ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
..++.|++++|.+.+..+.......++.++++.|.+++. .+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 568888999988887777655555777888888888766 7778888899999999999888777778888899999999
Q ss_pred ccC-cCCC-cchhhhcCCCCCCEEEcccC-cCCCC-CcccCCCCC-CCCEEECCCC--cCC-CCCCccCcCCCccceEEe
Q 045705 225 DSN-ALSG-SILNEIGNLKSLYYLELTSN-TLSGS-IPLPLGNLT-NLVVLELSDN--KLS-GLIPPSFGNLTNLTTLYV 296 (365)
Q Consensus 225 s~n-~l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L 296 (365)
++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 998 5764 25666788899999999998 77743 456677788 8999999998 444 334566677889999999
Q ss_pred eccc-cCCcchhhcCCCCCCCeEECcCCc-CCCCchhHhhhccCCCcEEEccCccccc
Q 045705 297 YKNS-IFGSILDEIGNLKSLSNINLSLNK-LNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 297 ~~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
++|. +++..+..+..+++|++|++++|. ++......+..++ +|+.|++++| ++.
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPD 285 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCT
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCH
Confidence 9998 766777788888999999999985 4323233566676 7999999988 553
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=8.7e-21 Score=175.75 Aligned_cols=177 Identities=23% Similarity=0.170 Sum_probs=116.2
Q ss_pred eeeccCCCCCCCcchhhhccccccceecccccccccchhhhh-CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705 149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIR-SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227 (365)
Q Consensus 149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 227 (365)
++++++++.+.. +|... ...++.++|+.|++++..+..+. .+++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 468888888844 44332 22345677777777766666665 6777777777777777666666777777777777777
Q ss_pred cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC---cCCCccceEEeeccccCCc
Q 045705 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF---GNLTNLTTLYVYKNSIFGS 304 (365)
Q Consensus 228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~ 304 (365)
.++...+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|.+...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7765555566777777777777777776656667777777777777777765544444 4566677777777777655
Q ss_pred chhhcCCCCC--CCeEECcCCcCCC
Q 045705 305 ILDEIGNLKS--LSNINLSLNKLNG 327 (365)
Q Consensus 305 ~~~~l~~l~~--L~~L~L~~N~l~~ 327 (365)
.+..+..++. ++.|+|++|++..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 5555555554 3667777776653
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.9e-20 Score=161.26 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=137.4
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
+.++++.++++. +|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 457778888874 455443 68999999999999888889999999999999999999888999999999999999999
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC
Q 045705 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 327 (365)
.++...+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9996666678899999999999999999989999999999999999999988888889999999999999999974
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.3e-22 Score=189.73 Aligned_cols=223 Identities=16% Similarity=0.161 Sum_probs=169.1
Q ss_pred cccccceeeeccCCCCCCCcchhhhc-----cccccceecccc---cccccchhhh-------hCCCCCcEEEeeCCcCC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHV-----TWPTWLLYLDIN---AISGSILDEI-------RSLKSLFNLRLGDNTLS 206 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~l~L~~n---~l~~~~~~~~-------~~l~~L~~L~ls~n~i~ 206 (365)
+...+.|+.|++++|.+.+..+..+. ...++.++|+.| .+++.+|..+ ..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 44455789999999998776554321 235677888774 4555666555 68899999999999998
Q ss_pred C----ccCcCCCCCCCCcEEEcccCcCCCcchhhhc----CC---------CCCCEEEcccCcCC-CCCc---ccCCCCC
Q 045705 207 G----SIPLSLGNLTNLATLYLDSNALSGSILNEIG----NL---------KSLYYLELTSNTLS-GSIP---LPLGNLT 265 (365)
Q Consensus 207 ~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~ 265 (365)
+ .++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|.+. +.++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 4677788899999999999998644444333 33 89999999999987 3334 3566788
Q ss_pred CCCEEECCCCcCCC-----CCCccCcCCCccceEEeeccccC----CcchhhcCCCCCCCeEECcCCcCCCC----chhH
Q 045705 266 NLVVLELSDNKLSG-----LIPPSFGNLTNLTTLYVYKNSIF----GSILDEIGNLKSLSNINLSLNKLNGS----IPLS 332 (365)
Q Consensus 266 ~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~N~l~~~----~p~~ 332 (365)
+|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..++..+..+++|++|+|++|.+++. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 99999999998872 23447788899999999999986 45677888899999999999999865 4555
Q ss_pred hhh--ccCCCcEEEccCccccc----cCChhh-hcCCCCC
Q 045705 333 LTN--LTNSLEVVCLSSNHIVG----EIPLEL-RKHSSLV 365 (365)
Q Consensus 333 l~~--~~~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~ 365 (365)
+.. ++ +|+.|++++|.+++ .+|..+ .++++|+
T Consensus 268 l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 268 FSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 533 55 79999999999997 488877 5577763
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.5e-20 Score=167.44 Aligned_cols=187 Identities=28% Similarity=0.356 Sum_probs=137.8
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 229 (365)
.+.+..+.+.+..+.. ....++.++++.|.+... +.+..+++|+.|++++|.+++..+ +.++++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEECHH-HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCcccccchh-hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3455555554433221 222445667777776643 246778888888888888886544 78888888888888888
Q ss_pred CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI 309 (365)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 309 (365)
++ +..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +
T Consensus 103 ~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 74 33488888888888888888753 4577888888888888888865 577888888888888888876644 7
Q ss_pred CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
..+++|+.|++++|.++ .++. +..++ +|+.|++++|+++.
T Consensus 175 ~~l~~L~~L~L~~N~i~-~l~~-l~~l~-~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHIS-DLRA-LAGLK-NLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCC-BCGG-GTTCT-TCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCC-CChh-hccCC-CCCEEECcCCcccC
Confidence 88888888888888888 4553 66676 68888888888874
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.9e-20 Score=161.18 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=137.0
Q ss_pred eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705 149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228 (365)
Q Consensus 149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 228 (365)
+.++.+++.+.. +|.... ..++.++|+.|+++...+..|..+++|+.|++++|.+++..|..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCc-CCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 468889998854 444332 466889999999998888899999999999999999998889999999999999999999
Q ss_pred CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
++...+..|..+++|++|+|++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 997666778999999999999999998888999999999999999999998888889999999999999998854
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=5e-22 Score=184.20 Aligned_cols=212 Identities=21% Similarity=0.177 Sum_probs=157.9
Q ss_pred cccccceeeeccCCCCCCCcch----hhhccc--cccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccC
Q 045705 142 VMFSMLFHVLDFPHTAYSDSME----EAHVTW--PTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIP 210 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~----~~~~~~--~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~ 210 (365)
......|+.||+++|.+.+..+ ..+... .++.++|+.|.+++..+..+..+ ++|++|++++|.+++..+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3445569999999999977665 333322 57889999999998888777765 899999999999986665
Q ss_pred cC----CCCC-CCCcEEEcccCcCCCcchhhh----cC-CCCCCEEEcccCcCCCCCcc----cCCCCC-CCCEEECCCC
Q 045705 211 LS----LGNL-TNLATLYLDSNALSGSILNEI----GN-LKSLYYLELTSNTLSGSIPL----PLGNLT-NLVVLELSDN 275 (365)
Q Consensus 211 ~~----~~~l-~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~----~~~~l~-~L~~L~L~~n 275 (365)
.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+...... .+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 54 3344 799999999999987666554 34 36899999999998854333 334554 8999999999
Q ss_pred cCCCCCCccCc----CC-CccceEEeeccccCCc----chhhcCC-CCCCCeEECcCCcCCCCchhHh----hhccCCCc
Q 045705 276 KLSGLIPPSFG----NL-TNLTTLYVYKNSIFGS----ILDEIGN-LKSLSNINLSLNKLNGSIPLSL----TNLTNSLE 341 (365)
Q Consensus 276 ~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~N~l~~~~p~~l----~~~~~~L~ 341 (365)
.+++..+..+. .+ ++|++|+|++|.+.+. ++..+.. .++|++|+|++|.+++..+..+ ..++ +|+
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~-~L~ 256 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-HLQ 256 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT-TCS
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC-Ccc
Confidence 99877654443 44 5899999999999763 3445544 4599999999999986555333 3345 799
Q ss_pred EEEccCccccccC
Q 045705 342 VVCLSSNHIVGEI 354 (365)
Q Consensus 342 ~L~l~~n~l~~~~ 354 (365)
.|++++|.+.+..
T Consensus 257 ~L~L~~n~l~~i~ 269 (362)
T 3goz_A 257 TVYLDYDIVKNMS 269 (362)
T ss_dssp EEEEEHHHHTTCC
T ss_pred EEEeccCCccccC
Confidence 9999999965433
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=9.9e-21 Score=187.65 Aligned_cols=180 Identities=26% Similarity=0.267 Sum_probs=134.3
Q ss_pred cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 249 (365)
.++.++|++|+|+...+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 34667777777776667778888888888888888887777788888888888888888886666778888888888888
Q ss_pred cCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCcCCCccceEEeeccccCCcchhhcCCCCC----CCeEECcCCc
Q 045705 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKS----LSNINLSLNK 324 (365)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~L~~N~ 324 (365)
+|.+++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+..+..+.+ ...++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 8888866666788888888888888888754 5677778888888888888887776666654433 3467788888
Q ss_pred CCCCchhHhhhccCCCcEEEccCcccc
Q 045705 325 LNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 325 l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
++ .++....... .++.+++++|..+
T Consensus 213 l~-~i~~~~~~~~-~~~~l~l~~n~~~ 237 (635)
T 4g8a_A 213 MN-FIQPGAFKEI-RLHKLTLRNNFDS 237 (635)
T ss_dssp CC-EECTTTTTTC-EEEEEEEESCCSS
T ss_pred cc-ccCcccccch-hhhhhhhhccccc
Confidence 87 4444433433 4667777777554
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=160.63 Aligned_cols=156 Identities=22% Similarity=0.212 Sum_probs=138.0
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 250 (365)
+.++++.|.++. +|..+. ..++.|++++|.+++..+ ..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468888898885 565443 467899999999997754 4588999999999999999977778899999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330 (365)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 330 (365)
|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999999989999999999999999999998889999999999999999999986544
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.3e-20 Score=185.00 Aligned_cols=179 Identities=24% Similarity=0.147 Sum_probs=151.9
Q ss_pred ccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC
Q 045705 177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS 256 (365)
Q Consensus 177 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 256 (365)
+..+++ .+|..+. +++++|||++|.|++..+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++.
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 333444 3454332 5799999999999988888999999999999999999977788899999999999999999977
Q ss_pred CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcCCCCCCCeEECcCCcCCCCchhHhhh
Q 045705 257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335 (365)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 335 (365)
.+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 777899999999999999999988888899999999999999999764 5788899999999999999999776776665
Q ss_pred cc---CCCcEEEccCccccccCChhh
Q 045705 336 LT---NSLEVVCLSSNHIVGEIPLEL 358 (365)
Q Consensus 336 ~~---~~L~~L~l~~n~l~~~~p~~l 358 (365)
+. .....++++.|.++...|..+
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~ 221 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAF 221 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccc
Confidence 44 234579999999986555444
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=159.80 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=138.6
Q ss_pred eeeeccCCCCCCCcchhhhccccccceecccccccccch-hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSIL-DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
-+.+++++|.+.. +|... ...++.++|+.|++++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCccc-CccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3479999999954 55433 3345789999999998755 5688999999999999999988888999999999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 304 (365)
|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999988888899999999999999999988899999999999999999999999899999999999999999998654
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=1.4e-20 Score=174.34 Aligned_cols=176 Identities=26% Similarity=0.252 Sum_probs=135.5
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 250 (365)
+.++++.++++. +|..+. ..++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456777777774 454443 4578888888888877777776 888888888888888876677788888888888888
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc---CCCCCCCeEECcCCcCCC
Q 045705 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI---GNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N~l~~ 327 (365)
|.+....+..|..+++|++|+|++|.+++..+..|.++++|+.|+|++|.++...+..| ..+++|+.|+|++|.|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88886666678888888888888888887778888888888888888888876655555 567888888888888884
Q ss_pred CchhHhhhccCC--CcEEEccCcccc
Q 045705 328 SIPLSLTNLTNS--LEVVCLSSNHIV 351 (365)
Q Consensus 328 ~~p~~l~~~~~~--L~~L~l~~n~l~ 351 (365)
..+..+..++ . ++.|++++|++.
T Consensus 178 l~~~~~~~l~-~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLP-AWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred cCHHHhhhcc-HhhcceEEecCCCcc
Confidence 4445566555 3 477888888775
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.3e-19 Score=156.95 Aligned_cols=155 Identities=26% Similarity=0.233 Sum_probs=136.5
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
+.++++.++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45777777776 4454443 88999999999999888999999999999999999998766677899999999999999
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330 (365)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 330 (365)
.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999777777899999999999999999 668888999999999999999988877889999999999999999986543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2e-19 Score=155.83 Aligned_cols=154 Identities=27% Similarity=0.264 Sum_probs=134.4
Q ss_pred eeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227 (365)
Q Consensus 148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 227 (365)
.+.++.+++.+ ..+|... ...++.++|+.|.+++..+..|..+++|++|++++|.++...+..|.++++|++|+|++|
T Consensus 21 ~~~v~c~~~~l-~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCC-SSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCc-CccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45688888888 4455433 256788999999999988999999999999999999998777778899999999999999
Q ss_pred cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304 (365)
Q Consensus 228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 304 (365)
.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+...
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999777777899999999999999999 7788889999999999999999988778899999999999999998654
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=2.9e-20 Score=157.24 Aligned_cols=154 Identities=18% Similarity=0.305 Sum_probs=130.9
Q ss_pred hCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCE
Q 045705 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV 269 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 269 (365)
+.+++|+.|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678999999999998 555 68889999999999997753 457889999999999999999777888999999999
Q ss_pred EECCCCcCCCCCCccCcCCCccceEEeeccc-cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNS-IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348 (365)
Q Consensus 270 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n 348 (365)
|++++|.+++..+..++.+++|++|++++|. +.+ ++ .+..+++|++|++++|.++ .++ .+..++ +|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~-~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFP-KLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCS-SCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc-ChH-HhccCC-CCCEEEeeCc
Confidence 9999999998778889999999999999998 644 44 6888999999999999999 455 677787 7999999999
Q ss_pred cccc
Q 045705 349 HIVG 352 (365)
Q Consensus 349 ~l~~ 352 (365)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9874
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.4e-19 Score=177.89 Aligned_cols=187 Identities=28% Similarity=0.370 Sum_probs=104.5
Q ss_pred eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705 150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229 (365)
Q Consensus 150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 229 (365)
.++++.+.+.+..+. .....++.++++.|.+... ..+..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+
T Consensus 25 ~l~l~~~~i~~~~~~-~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 25 KDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHTTCSCTTSEECH-HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HHhccCCCcccccch-hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344455444433322 1122334455555555432 235556666666666666664433 55666666666666666
Q ss_pred CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI 309 (365)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 309 (365)
.+ + ..+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+ +
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 53 2 245666666666666666653 2 3355666666666666666644 455566666666666666655444 5
Q ss_pred CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
..+++|+.|+|++|.+++ +| .+..++ +|+.|+|++|++++
T Consensus 172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~-~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISD-LR-ALAGLK-NLDVLELFSQECLN 211 (605)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCT-TCSEEECCSEEEEC
T ss_pred ccCCCCCEEECcCCCCCC-Ch-HHccCC-CCCEEEccCCcCcC
Confidence 666666666666666663 33 345555 56666666666654
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=6.2e-19 Score=173.61 Aligned_cols=193 Identities=21% Similarity=0.221 Sum_probs=103.7
Q ss_pred ccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L 224 (365)
.+.|++||+++|.+++ +|. ....++.++|+.|.+++. |. .+++|+.|++++|.++. +|.. +++|++|++
T Consensus 80 l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 4567888888887754 443 334566777777877753 32 45677788888887774 4432 467888888
Q ss_pred ccCcCCCcchhhhcC-----------------CCCCCEEEcccCcCCCCCcccCCC-----------------CCCCCEE
Q 045705 225 DSNALSGSILNEIGN-----------------LKSLYYLELTSNTLSGSIPLPLGN-----------------LTNLVVL 270 (365)
Q Consensus 225 s~n~l~~~~~~~l~~-----------------l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L 270 (365)
++|.+++ +|..+.. +++|+.|++++|.+++ +|..+.. +++|+.|
T Consensus 149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence 8887764 3322211 1556666666666653 2222111 1233444
Q ss_pred ECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350 (365)
Q Consensus 271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l 350 (365)
++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|+.|+|++|.++ .+|..+..++ +|+.|++++|++
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~-~L~~L~L~~N~l 296 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC-TTCEEECCSCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc-ccCEEEecCCCC
Confidence 444444432 12 223444445555554432 222 3345555555555555 4555555554 455555555555
Q ss_pred cccCChhhhc
Q 045705 351 VGEIPLELRK 360 (365)
Q Consensus 351 ~~~~p~~l~~ 360 (365)
++.+|..+.+
T Consensus 297 ~~~~~~~l~~ 306 (622)
T 3g06_A 297 SERTLQALRE 306 (622)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHh
Confidence 5555554443
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.3e-19 Score=176.61 Aligned_cols=193 Identities=22% Similarity=0.250 Sum_probs=145.6
Q ss_pred cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
+.|+.|++++|.+.. +|. ....++.++|+.|+++. +|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 579999999999864 444 33567889999999885 444 67899999999999985 443 56789999999
Q ss_pred cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCC-----------------CCCCCEEECCCCcCCCCCCcc---C
Q 045705 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN-----------------LTNLVVLELSDNKLSGLIPPS---F 285 (365)
Q Consensus 226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L~L~~n~l~~~~~~~---l 285 (365)
+|.++. +|.. +++|++|++++|.+++ +|..+.. +++|+.|++++|.+++. |.. +
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~~~~~L 203 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLPSEL 203 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CCCCTTC
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CCccchh
Confidence 999984 5543 4788888888888874 3332222 27788888888888753 222 2
Q ss_pred cC--------------CCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 286 GN--------------LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 286 ~~--------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
.. +++|+.|++++|.+++. | ..+++|+.|+|++|.++ .+|. .++ +|+.|++++|.++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~-~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPS-GLLSLSVYRNQLT 274 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSSCCC
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccc-cCcEEeCCCCCCC
Confidence 11 26788888888888653 3 45688999999999998 6775 344 7999999999999
Q ss_pred ccCChhhhcCCCCC
Q 045705 352 GEIPLELRKHSSLV 365 (365)
Q Consensus 352 ~~~p~~l~~l~~L~ 365 (365)
.+|..+.++++|+
T Consensus 275 -~lp~~l~~l~~L~ 287 (622)
T 3g06_A 275 -RLPESLIHLSSET 287 (622)
T ss_dssp -SCCGGGGGSCTTC
T ss_pred -cCCHHHhhccccC
Confidence 8899999998874
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.3e-20 Score=168.83 Aligned_cols=213 Identities=19% Similarity=0.113 Sum_probs=133.1
Q ss_pred cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccch-hhhhCCCCCcE-EEeeCCcCCCccCcCCCCCCCCcEE
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSIL-DEIRSLKSLFN-LRLGDNTLSGSIPLSLGNLTNLATL 222 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~-L~ls~n~i~~~~~~~~~~l~~L~~L 222 (365)
..++.|+|++|+++...+..+.. ..++.++|+.|++.+.++ .+|.++++++. +.+++|+++...|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 45777777777775433333332 356667777777655444 45666766554 4556677776667777777777777
Q ss_pred EcccCcCCCcchhhhcCCCCCCEEEccc-CcCCCCCcccCCCCC-CCCEEECCCCcCCCCCCccCcCCCccceEEeec-c
Q 045705 223 YLDSNALSGSILNEIGNLKSLYYLELTS-NTLSGSIPLPLGNLT-NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK-N 299 (365)
Q Consensus 223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n 299 (365)
++++|.+....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++.+.+..| ...+|++|++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence 7777777755555556666677777754 445544444555553 47777888887775444444 345677777764 5
Q ss_pred ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705 300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364 (365)
Q Consensus 300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L 364 (365)
.+....+.+|..+++|++|||++|+|+ .+|... +. +|+.|.+.++.--..+| .+.++++|
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~--~~-~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LE-NLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS--CT-TCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC-ccChhh--hc-cchHhhhccCCCcCcCC-CchhCcCh
Confidence 555454566777778888888888877 555432 22 56677766655444666 35555554
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=1.8e-21 Score=180.44 Aligned_cols=216 Identities=19% Similarity=0.190 Sum_probs=164.2
Q ss_pred cccc-ceeeeccCCCCCCCcchhhhcc------ccccceecccccccccchhhhh----CC-CCCcEEEeeCCcCCCccC
Q 045705 143 MFSM-LFHVLDFPHTAYSDSMEEAHVT------WPTWLLYLDINAISGSILDEIR----SL-KSLFNLRLGDNTLSGSIP 210 (365)
Q Consensus 143 ~~~~-~L~~L~ls~n~l~~~~~~~~~~------~~~~~l~L~~n~l~~~~~~~~~----~l-~~L~~L~ls~n~i~~~~~ 210 (365)
...+ .|++|++++|.+.+..+..+.. ..++.++|+.|.+++..+..+. .+ ++|++|++++|.+++..+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3344 7999999999998877665544 5788899999999987777554 44 899999999999986655
Q ss_pred cCC----CC-CCCCcEEEcccCcCCCcc----hhhhcCCC-CCCEEEcccCcCCCCCcccC----CCC-CCCCEEECCCC
Q 045705 211 LSL----GN-LTNLATLYLDSNALSGSI----LNEIGNLK-SLYYLELTSNTLSGSIPLPL----GNL-TNLVVLELSDN 275 (365)
Q Consensus 211 ~~~----~~-l~~L~~L~Ls~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n 275 (365)
..+ .. .++|++|++++|.+++.. +..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 443 34 369999999999998543 44456665 99999999999986665433 344 59999999999
Q ss_pred cCCCC----CCccCcC-CCccceEEeeccccCCcch----hhcCCCCCCCeEECcCCcCCCCchh-------HhhhccCC
Q 045705 276 KLSGL----IPPSFGN-LTNLTTLYVYKNSIFGSIL----DEIGNLKSLSNINLSLNKLNGSIPL-------SLTNLTNS 339 (365)
Q Consensus 276 ~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~p~-------~l~~~~~~ 339 (365)
.++.. ++..+.. .++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..+. .+..++ +
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~-~ 285 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ-K 285 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC-E
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC-c
Confidence 99864 3344544 4589999999999987654 4457789999999999996533322 334454 6
Q ss_pred CcEEEccCccccccCChhhh
Q 045705 340 LEVVCLSSNHIVGEIPLELR 359 (365)
Q Consensus 340 L~~L~l~~n~l~~~~p~~l~ 359 (365)
|+.||+++|++.+..|..+.
T Consensus 286 L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 286 IILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp EEEECTTSCBCCGGGCHHHH
T ss_pred eEEEecCCCcCCCcchHHHH
Confidence 99999999999977666554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.9e-19 Score=175.68 Aligned_cols=172 Identities=27% Similarity=0.321 Sum_probs=147.1
Q ss_pred cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
....|+.|++++|.+.. ++.......++.++|+.|.+++..+ +..+++|+.|+|++|.+++ ++ .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 44578999999999855 4444444577889999999997665 8899999999999999985 33 688999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
|++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 99999985 3 5689999999999999999964 678899999999999999997755 8899999999999999976
Q ss_pred cchhhcCCCCCCCeEECcCCcCCCC
Q 045705 304 SILDEIGNLKSLSNINLSLNKLNGS 328 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~~~ 328 (365)
. ..+..+++|+.|+|++|.+++.
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECC
T ss_pred C--hHHccCCCCCEEEccCCcCcCC
Confidence 5 4688999999999999999853
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.6e-19 Score=159.83 Aligned_cols=166 Identities=25% Similarity=0.261 Sum_probs=80.7
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.+..++++++.+.+.. .......++.++++.|+++.. + .+..+++|+.|++++|.+++..+ +.++++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 3555666666664332 111222344455555555432 2 34455555555555555553332 55555555555555
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL 306 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 306 (365)
|.+++ ++. +.. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--
Confidence 55543 222 112 555555555555553 22 344555555555555555533 2444555555555555555443
Q ss_pred hhcCCCCCCCeEECcCCcCC
Q 045705 307 DEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~ 326 (365)
..+..+++|+.|++++|.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 34455555555555555554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.9e-19 Score=158.99 Aligned_cols=171 Identities=26% Similarity=0.300 Sum_probs=145.7
Q ss_pred cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY 223 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 223 (365)
..+.|+.|++++|.+.+. +.......++.++++.|++++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 345789999999998654 443334567889999999997655 8999999999999999985 33 488999999999
Q ss_pred cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999863 5788999999999999999854 578899999999999999997654 8899999999999999976
Q ss_pred cchhhcCCCCCCCeEECcCCcCCC
Q 045705 304 SILDEIGNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 304 ~~~~~l~~l~~L~~L~L~~N~l~~ 327 (365)
. + .+..+++|+.|++++|+++.
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-h-hhccCCCCCEEECcCCcccC
Confidence 5 3 58899999999999999884
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.7e-21 Score=186.13 Aligned_cols=211 Identities=18% Similarity=0.130 Sum_probs=161.1
Q ss_pred cccccceeeeccCCCCCCCcchhhhc------cccccceeccccccccc----chhhhhCCCCCcEEEeeCCcCCCcc--
Q 045705 142 VMFSMLFHVLDFPHTAYSDSMEEAHV------TWPTWLLYLDINAISGS----ILDEIRSLKSLFNLRLGDNTLSGSI-- 209 (365)
Q Consensus 142 ~~~~~~L~~L~ls~n~l~~~~~~~~~------~~~~~~l~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~i~~~~-- 209 (365)
+...+.|+.|++++|.+.+..+.... ...++.++++.|.++.. ++..+..+++|++|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34456899999999988655443332 22677889999998874 4677788899999999999887532
Q ss_pred ---CcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCCCcccCC-----CCCCCCEEECCCCcC
Q 045705 210 ---PLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----NLTNLVVLELSDNKL 277 (365)
Q Consensus 210 ---~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l 277 (365)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 33344688999999999998854 567777899999999999988643332222 336899999999998
Q ss_pred CCC----CCccCcCCCccceEEeeccccCCcchhhcC----C-CCCCCeEECcCCcCCC----CchhHhhhccCCCcEEE
Q 045705 278 SGL----IPPSFGNLTNLTTLYVYKNSIFGSILDEIG----N-LKSLSNINLSLNKLNG----SIPLSLTNLTNSLEVVC 344 (365)
Q Consensus 278 ~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~N~l~~----~~p~~l~~~~~~L~~L~ 344 (365)
++. ++..+..+++|++|++++|.+.+..+..+. . .++|++|++++|.+++ .+|..+..++ +|++|+
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~ 404 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELD 404 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC-CccEEE
Confidence 865 345566779999999999998765554443 2 6799999999999986 6788888887 799999
Q ss_pred ccCcccccc
Q 045705 345 LSSNHIVGE 353 (365)
Q Consensus 345 l~~n~l~~~ 353 (365)
+++|++++.
T Consensus 405 l~~N~i~~~ 413 (461)
T 1z7x_W 405 LSNNCLGDA 413 (461)
T ss_dssp CCSSSCCHH
T ss_pred CCCCCCCHH
Confidence 999999854
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=3.9e-21 Score=183.71 Aligned_cols=218 Identities=18% Similarity=0.093 Sum_probs=152.6
Q ss_pred ceeeeccCCCCCCCcchh----hhc-cccccceecccccccccchhhhh-----CCCCCcEEEeeCCcCCCc----cCcC
Q 045705 147 LFHVLDFPHTAYSDSMEE----AHV-TWPTWLLYLDINAISGSILDEIR-----SLKSLFNLRLGDNTLSGS----IPLS 212 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~----~~~-~~~~~~l~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~i~~~----~~~~ 212 (365)
.|++|++++|.+.+.... .+. ...++.++++.|.++...+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 577888888877654322 111 13566777777777665554443 256788888888887753 4556
Q ss_pred CCCCCCCcEEEcccCcCCCcc-----hhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCCCCc
Q 045705 213 LGNLTNLATLYLDSNALSGSI-----LNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGLIPP 283 (365)
Q Consensus 213 ~~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 283 (365)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 667788888888888876432 22233578888888888888743 455666688888888888887644333
Q ss_pred cCc-----CCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhHhhh-----ccCCCcEEEccCcc
Q 045705 284 SFG-----NLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN-----LTNSLEVVCLSSNH 349 (365)
Q Consensus 284 ~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----~~~~L~~L~l~~n~ 349 (365)
.+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+ +|++|++++|.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~ 381 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCD 381 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCC
Confidence 332 225888999998888765 4566677889999999999988655555554 33 79999999999
Q ss_pred ccc----cCChhhhcCCCCC
Q 045705 350 IVG----EIPLELRKHSSLV 365 (365)
Q Consensus 350 l~~----~~p~~l~~l~~L~ 365 (365)
+++ .+|..+..+++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCC
T ss_pred CChhhHHHHHHHHHhCCCcc
Confidence 986 7888888888774
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.8e-18 Score=168.38 Aligned_cols=167 Identities=24% Similarity=0.255 Sum_probs=140.3
Q ss_pred cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 249 (365)
.++.++|+.|++++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56789999999987 66555 378999999999999 566 457899999999999996 666 655 99999999
Q ss_pred cCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI 329 (365)
Q Consensus 250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 329 (365)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999996 565 68999999999999997 454 57899999999999977 555 65 89999999999999 77
Q ss_pred hhHhhhccCCC-------cEEEccCccccccCChhhhcCCCCC
Q 045705 330 PLSLTNLTNSL-------EVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 330 p~~l~~~~~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
|. +.. +| +.|++++|+|+ .+|..+.++++|.
T Consensus 196 p~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 196 PA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred hh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 76 433 57 99999999999 7999999888873
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=7.9e-19 Score=161.86 Aligned_cols=189 Identities=19% Similarity=0.173 Sum_probs=93.3
Q ss_pred ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCCCcE-EEcccCcCCCcchhhhcCCCCCCEEEc
Q 045705 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLAT-LYLDSNALSGSILNEIGNLKSLYYLEL 248 (365)
Q Consensus 171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~L 248 (365)
++.++|+.|+|+...+.+|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+++|++....|..|..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 4455555555554444455555566666666655543332 34555555443 344445555444555555566666666
Q ss_pred ccCcCCCCCcccCCCCCCCCEEECCC-CcCCCCCCccCcCCC-ccceEEeeccccCCcchhhcCCCCCCCeEECcC-CcC
Q 045705 249 TSNTLSGSIPLPLGNLTNLVVLELSD-NKLSGLIPPSFGNLT-NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL-NKL 325 (365)
Q Consensus 249 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-N~l 325 (365)
++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++...+..+ ...+|+++++++ |.+
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTC
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcc
Confidence 66655544444444444555555543 344433334444443 35555666665543333333 234555555553 333
Q ss_pred CCCchhH-hhhccCCCcEEEccCccccccCChhhhcCC
Q 045705 326 NGSIPLS-LTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362 (365)
Q Consensus 326 ~~~~p~~-l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 362 (365)
+ .+|.. +..++ +|++||+++|+|+...+..+.+++
T Consensus 191 ~-~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 191 E-ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp C-CCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCC
T ss_pred c-CCCHHHhccCc-ccchhhcCCCCcCccChhhhccch
Confidence 3 44432 33444 466666666655532233344433
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=8.3e-19 Score=148.27 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=95.9
Q ss_pred cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251 (365)
Q Consensus 172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 251 (365)
+.++++.|.++ .++ .+..+++|++|++++|.++. + ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 33444444444 223 45666777777777776552 2 35666777777777777776656667777777777777777
Q ss_pred cCCCCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 252 TLSGSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 252 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
.+++..+..+..+++|++|++++|. ++. ++ .+..+++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 7776566667777777777777776 543 33 5677777777777777775532 5667777777777777765
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=1.6e-18 Score=145.97 Aligned_cols=131 Identities=27% Similarity=0.367 Sum_probs=76.4
Q ss_pred cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchh-hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705 196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274 (365)
Q Consensus 196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 274 (365)
+.+++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 33433322 556666666666544332 255666666666666666655555666666666666666
Q ss_pred CcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705 275 NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI 329 (365)
Q Consensus 275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 329 (365)
|.+++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|.+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666555555666666666666666666555666666666666666666666543
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.2e-18 Score=140.77 Aligned_cols=132 Identities=23% Similarity=0.225 Sum_probs=68.8
Q ss_pred CCCcEEEeeCCcCC-CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEE
Q 045705 193 KSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE 271 (365)
Q Consensus 193 ~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 271 (365)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45555556666666666666666543 4555555666666666655544444444455555555
Q ss_pred CCCCcCCCCC-CccCcCCCccceEEeeccccCCcch---hhcCCCCCCCeEECcCCcCC
Q 045705 272 LSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSIL---DEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 272 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~N~l~ 326 (365)
+++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554331 1344444444444444444433322 23444444444444444443
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5e-18 Score=150.11 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=89.2
Q ss_pred eecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC
Q 045705 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253 (365)
Q Consensus 174 l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 253 (365)
++++.+.++... .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 445555555332 34555666666666666652 33 45556666666666666654332 55666666666666666
Q ss_pred CCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHh
Q 045705 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSL 333 (365)
Q Consensus 254 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l 333 (365)
.+ ++... . ++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++. ..+
T Consensus 98 ~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 98 KN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp SC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred CC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHh
Confidence 53 22221 2 5566666666666543 2455566666666666666443 2455566666666666666533 344
Q ss_pred hhccCCCcEEEccCcccc
Q 045705 334 TNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 334 ~~~~~~L~~L~l~~n~l~ 351 (365)
..++ +|+.|++++|+++
T Consensus 169 ~~l~-~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 169 TRLK-KVNWIDLTGQKCV 185 (263)
T ss_dssp TTCC-CCCEEEEEEEEEE
T ss_pred ccCC-CCCEEeCCCCccc
Confidence 4454 4666666666655
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=5.8e-18 Score=139.22 Aligned_cols=138 Identities=23% Similarity=0.212 Sum_probs=121.5
Q ss_pred CCCCcEEEcccCcCC-CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705 216 LTNLATLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294 (365)
Q Consensus 216 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 294 (365)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999997 67888889999999999999999865 788899999999999999998788888889999999
Q ss_pred EeeccccCCcc-hhhcCCCCCCCeEECcCCcCCCCch---hHhhhccCCCcEEEccCccccccCChh
Q 045705 295 YVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIP---LSLTNLTNSLEVVCLSSNHIVGEIPLE 357 (365)
Q Consensus 295 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~~~~~L~~L~l~~n~l~~~~p~~ 357 (365)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..++ +|++|++++|.+. ++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCChh-hcccc
Confidence 99999997753 3789999999999999999995444 3677777 7999999999998 66654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=7.7e-19 Score=176.60 Aligned_cols=186 Identities=24% Similarity=0.261 Sum_probs=81.1
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccc---------cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCC
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISG---------SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLT 217 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~---------~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~ 217 (365)
.++.|+|++|.+... +.. .+..+.|+.|.+.. ..+..+..+..|+.|+|++|.+. .+|..+..++
T Consensus 174 ~~~~l~L~~n~~~~~-~~~----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQA----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred ccceEEeeCCCCCcc-hhh----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 467788888777542 221 12233344333322 23455556666666666666666 4444444566
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
+|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 6666666666665 55666666666666666666666 55666666666666666666665 345556666666666666
Q ss_pred ccccCCcchhhcCCCC-CCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705 298 KNSIFGSILDEIGNLK-SLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n 348 (365)
+|.+++.+|..+..+. .+..++|++|.+++.+|. .|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 6666655555543321 112355666666655542 3445555555
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=2.7e-19 Score=179.85 Aligned_cols=146 Identities=27% Similarity=0.301 Sum_probs=69.5
Q ss_pred CcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705 210 PLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289 (365)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 289 (365)
+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555554 34444445555555555555555 44455555555555555555555 3355555555
Q ss_pred ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh
Q 045705 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR 359 (365)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~ 359 (365)
+|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..+.
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 5555555555553 33444555555555555555555444444433321122345555555555554443
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.1e-17 Score=140.78 Aligned_cols=133 Identities=27% Similarity=0.280 Sum_probs=119.6
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcc-cCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
-+++++++|.++ .+|..+.. +|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999999997 67776544 899999999999966654 48899999999999999999999999999999999999
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
+|.+++..+..|..+++|++|+|++|++++..|..+..++ +|++|++++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCcCc
Confidence 9999988888899999999999999999988888888887 79999999999987654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=2.4e-19 Score=175.15 Aligned_cols=185 Identities=18% Similarity=0.196 Sum_probs=87.0
Q ss_pred ccceeeeccCCCCCCCcchhhhccc-cccceeccccc-------------ccccchhhhhCCCCCcEEE-eeCCcCCCcc
Q 045705 145 SMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINA-------------ISGSILDEIRSLKSLFNLR-LGDNTLSGSI 209 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~-------------l~~~~~~~~~~l~~L~~L~-ls~n~i~~~~ 209 (365)
.+.|+.|+|++|.+. .+|..+... .++.++++.|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 445666777777663 445433322 33444444432 3445555556666666665 3443322
Q ss_pred CcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705 210 PLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289 (365)
Q Consensus 210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 289 (365)
.|+.+.+++|.++. ++. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.++
T Consensus 424 --------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 11111122222221 110 124555555555552 333 455555555555555555 3444555555
Q ss_pred ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcEEEccCcccccc
Q 045705 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEVVCLSSNHIVGE 353 (365)
Q Consensus 290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~L~l~~n~l~~~ 353 (365)
+|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..++ +|+.|++++|++++.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQE 548 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCC
Confidence 55555555555543 23 4555555555555555555333 45555554 455555555555533
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=7.1e-20 Score=178.88 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=76.4
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345 (365)
Q Consensus 266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l 345 (365)
.|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+| .+..++ +|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~-~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLP-RLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCS-SCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCC-CCcEEEC
Confidence 47888888888886 454 888888888888888886 66778888888888888888888 467 677777 6888888
Q ss_pred cCccccccC-ChhhhcCCCCC
Q 045705 346 SSNHIVGEI-PLELRKHSSLV 365 (365)
Q Consensus 346 ~~n~l~~~~-p~~l~~l~~L~ 365 (365)
++|++++.. |..++.+++|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCC
T ss_pred CCCCCCCCCCcHHHhcCCCCC
Confidence 888888766 88888888774
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=134.92 Aligned_cols=126 Identities=28% Similarity=0.415 Sum_probs=68.9
Q ss_pred EEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc
Q 045705 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276 (365)
Q Consensus 197 ~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 276 (365)
.+++++|.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 3333221 35555555555554 444555555555555555555554444555555555555555555
Q ss_pred CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 277 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
+++..+..|.++++|+.|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55555555555555666666666555444445555556666666666554
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.8e-16 Score=131.43 Aligned_cols=133 Identities=28% Similarity=0.296 Sum_probs=101.6
Q ss_pred CcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705 195 LFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274 (365)
Q Consensus 195 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 274 (365)
.+.+++++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356777777777 344333 25788888888888766666677888888888888888866666677888888888888
Q ss_pred CcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705 275 NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330 (365)
Q Consensus 275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p 330 (365)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88887777777888888888888888876666667788888888888888886554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.1e-17 Score=134.72 Aligned_cols=127 Identities=22% Similarity=0.203 Sum_probs=65.1
Q ss_pred CCCcEEEeeCCcCC-CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEE
Q 045705 193 KSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE 271 (365)
Q Consensus 193 ~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 271 (365)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. .. +..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~------------------------~~~l~~L~~L~ 70 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN------------------------LPKLNKLKKLE 70 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT------------------------CCCCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh------------------------hhcCCCCCEEE
Confidence 34555555555554 34444445555555555555555432 33 44444455555
Q ss_pred CCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcCCCCCCCeEECcCCcCCCCch---hHhhhccCCCcEEEcc
Q 045705 272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSLSNINLSLNKLNGSIP---LSLTNLTNSLEVVCLS 346 (365)
Q Consensus 272 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~~~~~L~~L~l~ 346 (365)
+++|.+++.+|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..++ +|+.||++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 555555444444444455555555555555442 23455556666666666666663333 2445555 56666654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=2.7e-17 Score=132.42 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=107.1
Q ss_pred CCCCCEEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeE
Q 045705 240 LKSLYYLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI 318 (365)
Q Consensus 240 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 318 (365)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888999999887 67788888999999999999999876 788999999999999999988788888889999999
Q ss_pred ECcCCcCCCC-chhHhhhccCCCcEEEccCccccccCC---hhhhcCCCCC
Q 045705 319 NLSLNKLNGS-IPLSLTNLTNSLEVVCLSSNHIVGEIP---LELRKHSSLV 365 (365)
Q Consensus 319 ~L~~N~l~~~-~p~~l~~~~~~L~~L~l~~n~l~~~~p---~~l~~l~~L~ 365 (365)
++++|.+++. .+..+..++ +|++|++++|++++..+ ..+..+++|+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred ECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 9999999952 347788887 79999999999997666 5888888874
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=132.97 Aligned_cols=129 Identities=24% Similarity=0.307 Sum_probs=114.6
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 298 (365)
-+++++++|.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 368999999998 5676553 68999999999998 7788999999999999999999998888999999999999999
Q ss_pred cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
|.+++..+..|..+++|++|+|++|.++...+..+..++ +|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-cccEEEeCCCCeec
Confidence 999998888999999999999999999944444566777 79999999999863
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=3.2e-16 Score=129.90 Aligned_cols=134 Identities=29% Similarity=0.302 Sum_probs=115.6
Q ss_pred CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297 (365)
Q Consensus 218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 297 (365)
..+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4578999999998 456544 3689999999999997777778999999999999999998877888999999999999
Q ss_pred ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
+|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEecCCCeeccCc
Confidence 9999888888889999999999999999944444456676 79999999999997655
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.8e-16 Score=144.81 Aligned_cols=212 Identities=11% Similarity=0.062 Sum_probs=157.6
Q ss_pred ccceeeeccCCCCCC--CcchhhhccccccceecccccccccchhhhhC--------CCCCcEEEeeCCcCCCccCcCCC
Q 045705 145 SMLFHVLDFPHTAYS--DSMEEAHVTWPTWLLYLDINAISGSILDEIRS--------LKSLFNLRLGDNTLSGSIPLSLG 214 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~--------l~~L~~L~ls~n~i~~~~~~~~~ 214 (365)
.+.|++|||++|.+. ....... .. .....+..|. +...+|.+ +++|+.|++.+ .++.+.+.+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~-~~-~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY-PN-GKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS-GG-GCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCccccc-cc-cccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 446999999999986 1111111 11 1233333342 33456666 99999999998 88877888899
Q ss_pred CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC----CCCCcccC-----------------------------
Q 045705 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL----SGSIPLPL----------------------------- 261 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~~~~~----------------------------- 261 (365)
++++|+++++++|.+....+.+|..+.++..+.+..+.. .......|
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 999999999999998777777888877777766554211 00000000
Q ss_pred ---------------------CCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCC-eEE
Q 045705 262 ---------------------GNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS-NIN 319 (365)
Q Consensus 262 ---------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~ 319 (365)
..+++|+.+++++|.++.+.+.+|.++++|+.+++.+| +..+...+|.++.+|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 02789999999999999888889999999999999998 7777788999999999 999
Q ss_pred CcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705 320 LSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 320 L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+.+ .++..-+.+|..+. +|+.+++++|.++...+..|.+|++|.
T Consensus 281 l~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp ECT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred Ecc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchh
Confidence 998 77734456777777 799999999999977777999998874
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.4e-16 Score=129.65 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh--hcCCCCCCCeEE
Q 045705 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD--EIGNLKSLSNIN 319 (365)
Q Consensus 242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~ 319 (365)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. ++. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 444444444444422 344445555555555555554333333555555555555555532 222 455555566666
Q ss_pred CcCCcCCCCchhH----hhhccCCCcEEEccCcccc
Q 045705 320 LSLNKLNGSIPLS----LTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 320 L~~N~l~~~~p~~----l~~~~~~L~~L~l~~n~l~ 351 (365)
+++|.++ .+|.. +..++ +|+.||+++|.+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~-~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVP-QVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCT-TCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCC-ccceeCCCcCCHH
Confidence 6666655 34432 44554 4666666666544
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=2.9e-18 Score=145.03 Aligned_cols=153 Identities=24% Similarity=0.259 Sum_probs=97.8
Q ss_pred CCCCcEEEeeCCcCCCccCc------CCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCC
Q 045705 192 LKSLFNLRLGDNTLSGSIPL------SLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT 265 (365)
Q Consensus 192 l~~L~~L~ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 265 (365)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444455555555544443 55566666666666666654 44 5666666666666666666 4555555556
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCCchh----------Hhh
Q 045705 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGSIPL----------SLT 334 (365)
Q Consensus 266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~ 334 (365)
+|++|++++|.+++. | .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 677777777777653 3 56677778888888887765432 4677788888888888888755443 256
Q ss_pred hccCCCcEEEccCccccc
Q 045705 335 NLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 335 ~~~~~L~~L~l~~n~l~~ 352 (365)
.++ +|+.|| +|.++.
T Consensus 172 ~l~-~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLP-NLKKLD--GMPVDV 186 (198)
T ss_dssp HCS-SCSEEC--CGGGTT
T ss_pred hCC-CcEEEC--CcccCH
Confidence 666 688876 677663
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=6.2e-16 Score=128.07 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=103.8
Q ss_pred hhCCCCCcEEEeeCCcCCCccCcCCCCC-CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCC
Q 045705 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNL-TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267 (365)
Q Consensus 189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 267 (365)
+..+.+|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4566788999999998884 444 4444 4899999999998853 678888899999999999885544555788899
Q ss_pred CEEECCCCcCCCCCCc--cCcCCCccceEEeeccccCCcchh----hcCCCCCCCeEECcCCcCC
Q 045705 268 VVLELSDNKLSGLIPP--SFGNLTNLTTLYVYKNSIFGSILD----EIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 268 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~ 326 (365)
++|++++|.+.. +|. .+..+++|+.|++++|.+... |. .+..+++|+.||+++|.+.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998864 444 778888999999999988644 44 4788899999999998876
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=4.1e-16 Score=153.48 Aligned_cols=217 Identities=13% Similarity=0.034 Sum_probs=121.3
Q ss_pred cccceeeeccCCCCCCCcchhhhcc---ccccceeccccc-ccc-cchhhhhCCCCCcEEEeeCCcCCCc----cCcCCC
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHVT---WPTWLLYLDINA-ISG-SILDEIRSLKSLFNLRLGDNTLSGS----IPLSLG 214 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~~---~~~~~l~L~~n~-l~~-~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~ 214 (365)
..+.|++|+|++|.+.+..+..... ..++.++|+.|. ++. ..+.....+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4456777777777766554443322 225566666554 221 1222234567777777777766543 222334
Q ss_pred CCCCCcEEEcccCcCCC----cchhhhcCCCCCCEEEcccCcCCCCCccc---------------------------CCC
Q 045705 215 NLTNLATLYLDSNALSG----SILNEIGNLKSLYYLELTSNTLSGSIPLP---------------------------LGN 263 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~ 263 (365)
.+++|++|++++|.+++ .++..+..+++|++|++++|.+.+ ++.. +..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 55666666666666652 233334556666666666665542 3333 444
Q ss_pred CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCC-chhHhhhccCCCc
Q 045705 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGS-IPLSLTNLTNSLE 341 (365)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~~~~~L~ 341 (365)
+++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+. ++.....++ +|+
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~-~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK-QLK 345 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT-TCC
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC-CCC
Confidence 45555555555322 2345566677788888888887655433 445777888888887 444433 333334455 688
Q ss_pred EEEcc-----------CccccccC-ChhhhcCCCC
Q 045705 342 VVCLS-----------SNHIVGEI-PLELRKHSSL 364 (365)
Q Consensus 342 ~L~l~-----------~n~l~~~~-p~~l~~l~~L 364 (365)
+|+++ .|.+++.. +.....+++|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 88888 35666432 2334446655
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.7e-17 Score=140.28 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=114.1
Q ss_pred chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC
Q 045705 185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL 264 (365)
Q Consensus 185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 264 (365)
+|..+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 44588899999999999999996 56 8888999999999999998 677778888999999999999985 44 57788
Q ss_pred CCCCEEECCCCcCCCCCC-ccCcCCCccceEEeeccccCCcchh----------hcCCCCCCCeEECcCCcCCC
Q 045705 265 TNLVVLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSILD----------EIGNLKSLSNINLSLNKLNG 327 (365)
Q Consensus 265 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~L~~N~l~~ 327 (365)
++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999999999986432 4688899999999999998766554 377889999987 777763
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=7.3e-16 Score=151.72 Aligned_cols=216 Identities=14% Similarity=0.072 Sum_probs=101.4
Q ss_pred ccceeeeccCCCCCCCcc----hhhh-ccccccceeccccccc----ccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC
Q 045705 145 SMLFHVLDFPHTAYSDSM----EEAH-VTWPTWLLYLDINAIS----GSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN 215 (365)
Q Consensus 145 ~~~L~~L~ls~n~l~~~~----~~~~-~~~~~~~l~L~~n~l~----~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~ 215 (365)
.+.|++|++++|.+.+.. +... ....++.++++.|.++ ..++..+..+++|+.|++++|.+.+ ++..+.+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 345666666666554331 1111 1123445555555554 2233334455666666666655542 3333344
Q ss_pred CCCCcEEEcc---------------------------cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCC
Q 045705 216 LTNLATLYLD---------------------------SNALSGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNL 267 (365)
Q Consensus 216 l~~L~~L~Ls---------------------------~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 267 (365)
+++|++|+++ ++.. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 4444444443 3222 1334444445555555555555432111 123445555
Q ss_pred CEEECCCCcCCCC-CCccCcCCCccceEEee-----------ccccCCcc-hhhcCCCCCCCeEECcCCcCCCCchhHhh
Q 045705 268 VVLELSDNKLSGL-IPPSFGNLTNLTTLYVY-----------KNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIPLSLT 334 (365)
Q Consensus 268 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~-----------~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 334 (365)
++|+++ +.+... ++..+..+++|++|+++ .|.+++.. ......+++|++|+++.|.+++..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 555555 222111 12222345566666666 23443322 22233456666777666666655555555
Q ss_pred h-ccCCCcEEEcc----Ccccccc-----CChhhhcCCCC
Q 045705 335 N-LTNSLEVVCLS----SNHIVGE-----IPLELRKHSSL 364 (365)
Q Consensus 335 ~-~~~~L~~L~l~----~n~l~~~-----~p~~l~~l~~L 364 (365)
. ++ +|+.|+++ .|.+++. ++..+..+++|
T Consensus 400 ~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 400 TYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp HHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred hhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 5 44 57777775 5556542 33335555554
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=4e-14 Score=116.42 Aligned_cols=103 Identities=27% Similarity=0.372 Sum_probs=50.7
Q ss_pred cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC
Q 045705 196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275 (365)
Q Consensus 196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 275 (365)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555 2333331 45555555555555444555555555555555555555443334444555555555555
Q ss_pred cCCCCCCccCcCCCccceEEeecccc
Q 045705 276 KLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 276 ~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
.+++..+..|..+++|+.|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55444444444444444444444444
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=5.4e-14 Score=115.63 Aligned_cols=105 Identities=30% Similarity=0.296 Sum_probs=55.1
Q ss_pred CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298 (365)
Q Consensus 219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 298 (365)
.+++++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555555554 2443332 4555555555555544455555555555555555555544444455555555555555
Q ss_pred cccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 299 NSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
|++++..+..|..+++|++|+|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444444555555555555555554
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5.9e-14 Score=115.89 Aligned_cols=103 Identities=28% Similarity=0.393 Sum_probs=53.2
Q ss_pred cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC
Q 045705 196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN 275 (365)
Q Consensus 196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 275 (365)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666655 3343332 45555555555555544555555555555555555555433333445555555555555
Q ss_pred cCCCCCCccCcCCCccceEEeecccc
Q 045705 276 KLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 276 ~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
.+++..+..|..+++|++|+|++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 55544333444455555555555544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=9.4e-14 Score=114.65 Aligned_cols=103 Identities=25% Similarity=0.288 Sum_probs=54.8
Q ss_pred ceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCc
Q 045705 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252 (365)
Q Consensus 173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 252 (365)
.++++.|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3455555554 2333332 455555555555555555555555555555555555554444444555555555555555
Q ss_pred CCCCCcccCCCCCCCCEEECCCCcCC
Q 045705 253 LSGSIPLPLGNLTNLVVLELSDNKLS 278 (365)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (365)
+.+..+..+..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55443334555555555555555554
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.47 E-value=3e-15 Score=147.32 Aligned_cols=217 Identities=15% Similarity=0.077 Sum_probs=148.8
Q ss_pred cccceeeeccCCCCCCCcchhhhc--cccccceecccccccccchhhh-hCCCCCcEEEeeC---------CcCCCccCc
Q 045705 144 FSMLFHVLDFPHTAYSDSMEEAHV--TWPTWLLYLDINAISGSILDEI-RSLKSLFNLRLGD---------NTLSGSIPL 211 (365)
Q Consensus 144 ~~~~L~~L~ls~n~l~~~~~~~~~--~~~~~~l~L~~n~l~~~~~~~~-~~l~~L~~L~ls~---------n~i~~~~~~ 211 (365)
..+.|+.|++++|.+.+....... ...++.++++.| ++......+ ..+++|+.|++++ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 456899999999997654333222 235677888877 443333333 4589999999954 344432222
Q ss_pred CC-CCCCCCcEEEcccCcCCCcchhhhc-CCCCCCEEEcc--c----CcCCCCC-----cccCCCCCCCCEEECCCCcCC
Q 045705 212 SL-GNLTNLATLYLDSNALSGSILNEIG-NLKSLYYLELT--S----NTLSGSI-----PLPLGNLTNLVVLELSDNKLS 278 (365)
Q Consensus 212 ~~-~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~ 278 (365)
.+ .++++|++|++.+|.+++..+..+. .+++|+.|+++ + +.++... +..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 2478999999999999866666665 58999999999 3 4554221 11256678999999977 565
Q ss_pred CCCCccCcC-CCccceEEeeccccCCcchhhc-CCCCCCCeEECcCCcCCCCchhHhh-hccCCCcEEEccCccccccCC
Q 045705 279 GLIPPSFGN-LTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLT-NLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 279 ~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~-~~~~~L~~L~l~~n~l~~~~p 355 (365)
...+..+.. +++|+.|++++|.+++.....+ ..+++|+.|+|++|.+++..+..+. .++ +|+.|++++|+++....
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBHHHH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCHHHH
Confidence 444444444 7899999999999977655555 6689999999999999755444343 356 79999999999875444
Q ss_pred hhh-hcCCC
Q 045705 356 LEL-RKHSS 363 (365)
Q Consensus 356 ~~l-~~l~~ 363 (365)
..+ ..++.
T Consensus 524 ~~l~~~lp~ 532 (594)
T 2p1m_B 524 KLLGQKMPK 532 (594)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 444 33444
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.4e-15 Score=140.93 Aligned_cols=182 Identities=18% Similarity=0.141 Sum_probs=107.4
Q ss_pred cccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccCcCC-CCCCCCcEEEcccCcCCCcchhhh-----c
Q 045705 170 PTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEI-----G 238 (365)
Q Consensus 170 ~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l-----~ 238 (365)
.++.++|+.|.++......+..+ .+|+.|+|++|.++......+ ..+++|++|+|++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 45667777777776555444332 577888888887764322222 234567788888887764433333 2
Q ss_pred CCCCCCEEEcccCcCCC----CCcccCCCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----ch
Q 045705 239 NLKSLYYLELTSNTLSG----SIPLPLGNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----IL 306 (365)
Q Consensus 239 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~ 306 (365)
..++|++|+|++|.++. .++..+..+++|++|+|++|.+... ++..+...++|++|+|++|.+++. +.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 45677788888777753 1233345667777788877777543 234455666777777777777653 23
Q ss_pred hhcCCCCCCCeEECcCCcCCCCchhHhhhccC----CCcEEE--ccCcccc
Q 045705 307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN----SLEVVC--LSSNHIV 351 (365)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~----~L~~L~--l~~n~l~ 351 (365)
..+...++|++|+|++|.|++.....+..+.. .|+.+. +..|.++
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34445667777777777777544444444321 155555 5555554
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=1.2e-12 Score=122.31 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=88.0
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 226 (365)
.|+.+++++|.+.......+....++.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+ .+|+.+.+.
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence 4444444444443322222222223333333 2233344444445555555555432 33333444444 445555552
Q ss_pred CcCCCcchhhhcCCCCCCEEEcccCcCC-----CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 227 NALSGSILNEIGNLKSLYYLELTSNTLS-----GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
+.++.....+|.++++|+.+++.+|.+. ...+..|.++++|+.+++. +.++.+...+|.++++|+.+.+..+ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence 2233333445555555555555554432 1233445555555555555 2344444455555555555555333 3
Q ss_pred CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349 (365)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~ 349 (365)
......+|.++ +|+.+++.+|.+....+..+..++..++.|++..+.
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 33444555555 555555555555432233333343345555555443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=1.9e-12 Score=121.06 Aligned_cols=206 Identities=10% Similarity=0.034 Sum_probs=115.6
Q ss_pred ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCC-------------------
Q 045705 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG------------------- 207 (365)
Q Consensus 147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~------------------- 207 (365)
.|+.++++.+ +.......+....++.+.+.. .+..+...+|.+|.+|+.+++++|.++.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 3455555443 332222333333333333332 3444444455555555555555555443
Q ss_pred ---ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC-----C
Q 045705 208 ---SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-----G 279 (365)
Q Consensus 208 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~ 279 (365)
+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+......+|.++++|+.+++.+|.+. .
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 33444555555555555443 23233344444 455555552 3344344566777778888887776654 3
Q ss_pred CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch-hHhhhccCCCcEEEccCccccccCChhh
Q 045705 280 LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSSNHIVGEIPLEL 358 (365)
Q Consensus 280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~~~~~L~~L~l~~n~l~~~~p~~l 358 (365)
+.+.+|.++++|+.+++.. .+......+|.++.+|+.++|..| ++ .++ .+|..+ +|+.+++++|.+....+..|
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT--GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS--CCCEEEECCSSCCBCCCSSC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC--CCCEEEEcCCCCcccccccc
Confidence 4556777788888888873 465566677888888888888554 55 443 344444 58888888887775555566
Q ss_pred hcCC
Q 045705 359 RKHS 362 (365)
Q Consensus 359 ~~l~ 362 (365)
..++
T Consensus 366 ~~~~ 369 (401)
T 4fdw_A 366 YGFP 369 (401)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6553
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=3.7e-15 Score=138.07 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=98.6
Q ss_pred cceeeeccCCCCCCCcchhhhcc------ccccceecccccccccchhhh-hCCCCCcEEEeeCCcCCCccCcCC-----
Q 045705 146 MLFHVLDFPHTAYSDSMEEAHVT------WPTWLLYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSL----- 213 (365)
Q Consensus 146 ~~L~~L~ls~n~l~~~~~~~~~~------~~~~~l~L~~n~l~~~~~~~~-~~l~~L~~L~ls~n~i~~~~~~~~----- 213 (365)
..|+.|++++|.++......+.. ..++.++|+.|.++......+ ..+.+|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35677777777765433322211 245566777777665444333 234567777777777764332222
Q ss_pred CCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCC----C
Q 045705 214 GNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGL----I 281 (365)
Q Consensus 214 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~ 281 (365)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+... ++..+...++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2346677777777776532 333445667777777777776531 133455566777777777776643 2
Q ss_pred CccCcCCCccceEEeeccccCCcchhhcCCC---C--CCCeEE--CcCCcCC
Q 045705 282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNL---K--SLSNIN--LSLNKLN 326 (365)
Q Consensus 282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~--~L~~L~--L~~N~l~ 326 (365)
+..+...++|++|+|++|.+++.....+..+ . .|+.+. +..|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2333445667777777777755443333222 1 155555 5555554
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=4.2e-14 Score=139.16 Aligned_cols=220 Identities=15% Similarity=0.088 Sum_probs=122.3
Q ss_pred ccccceeeeccCCCCCCCcchhhhc--cccccceecccc-ccccc-chhhhhCCCCCcEEEeeCCcCCCccCc----CCC
Q 045705 143 MFSMLFHVLDFPHTAYSDSMEEAHV--TWPTWLLYLDIN-AISGS-ILDEIRSLKSLFNLRLGDNTLSGSIPL----SLG 214 (365)
Q Consensus 143 ~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~~~l~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~----~~~ 214 (365)
...+.|+.|++++|.+.+..+.... ...++.++|+.| .++.. .+..+..+++|++|++++|.+++..+. ...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3455788899998888766555442 246677778777 55543 334445788899999998887754333 234
Q ss_pred CCCCCcEEEcccCc--CCCc-chhhhcCCCCCCEEEcccCcCCCCCcccCC-----------------------------
Q 045705 215 NLTNLATLYLDSNA--LSGS-ILNEIGNLKSLYYLELTSNTLSGSIPLPLG----------------------------- 262 (365)
Q Consensus 215 ~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----------------------------- 262 (365)
.+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 66788888888886 2211 122234467888888877621111222222
Q ss_pred -------------------------CCCCCCEEECCCCcCCCCC-CccCcCCCccceEEeeccccCCc-chhhcCCCCCC
Q 045705 263 -------------------------NLTNLVVLELSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSL 315 (365)
Q Consensus 263 -------------------------~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 315 (365)
.+++|++|++++|.++... ...+..+++|++|++++| +.+. ++.....+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 3455666666666544221 112335566666666665 3222 12222235666
Q ss_pred CeEECc---------CCcCCCCchhHhhh-ccCCCcEEEccCccccccCChhhh-cCCCC
Q 045705 316 SNINLS---------LNKLNGSIPLSLTN-LTNSLEVVCLSSNHIVGEIPLELR-KHSSL 364 (365)
Q Consensus 316 ~~L~L~---------~N~l~~~~p~~l~~-~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L 364 (365)
++|+++ .+.+++.....+.. ++ +|+.|++..|.+++..+..+. .+++|
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L 399 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNM 399 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence 666662 23444333333332 44 577777776777655555554 35554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=9e-13 Score=120.13 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=124.2
Q ss_pred ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC----C----------------
Q 045705 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL----S---------------- 230 (365)
Q Consensus 171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----~---------------- 230 (365)
++.++|.. .++.+...+|.++++|+.+++++|.+..+.+.+|.++.++.++.+..+.. .
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~ 181 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence 34445544 55555556677777777777777776666666666666666655544211 0
Q ss_pred ------Ccchh---------------------------hh-cCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc
Q 045705 231 ------GSILN---------------------------EI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276 (365)
Q Consensus 231 ------~~~~~---------------------------~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 276 (365)
+.++. .+ ..+++|+.+++++|.++...+..|.++.+|+.+++.+|
T Consensus 182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n- 260 (329)
T 3sb4_A 182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN- 260 (329)
T ss_dssp EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence 00000 01 12789999999999999777778999999999999998
Q ss_pred CCCCCCccCcCCCccc-eEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705 277 LSGLIPPSFGNLTNLT-TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345 (365)
Q Consensus 277 l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l 345 (365)
++.+.+.+|.++++|+ .+++.+ .+..+.+.+|.++++|+.+++++|.++...+.+|..++ +|+.++.
T Consensus 261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly~ 328 (329)
T 3sb4_A 261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEEC
T ss_pred cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhcc
Confidence 8777888999999999 999988 77777789999999999999999999944444666676 7998864
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=3.9e-12 Score=116.72 Aligned_cols=105 Identities=26% Similarity=0.271 Sum_probs=87.1
Q ss_pred cEEEeeCC-cCCCccCcCCCCCCCCcEEEccc-CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECC
Q 045705 196 FNLRLGDN-TLSGSIPLSLGNLTNLATLYLDS-NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELS 273 (365)
Q Consensus 196 ~~L~ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 273 (365)
..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 788 4666 88888999999986 88887777888899999999999999988888888889999999999
Q ss_pred CCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705 274 DNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303 (365)
Q Consensus 274 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 303 (365)
+|.+++..+..|..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999877766776665 8899998888754
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=4.4e-12 Score=116.35 Aligned_cols=105 Identities=21% Similarity=0.131 Sum_probs=92.1
Q ss_pred ceecccc-cccccchhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705 173 LLYLDIN-AISGSILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250 (365)
Q Consensus 173 ~l~L~~n-~l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 250 (365)
.++++.+ +++. +|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|.|++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 7875 677 99999999999996 999988888999999999999999999988889999999999999999
Q ss_pred CcCCCCCcccCCCCCCCCEEECCCCcCCCC
Q 045705 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGL 280 (365)
Q Consensus 251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 280 (365)
|.+++..+..+..+. |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999966666666555 99999999998753
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.3e-10 Score=106.89 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=95.1
Q ss_pred chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhc--CCCCCCEEEccc--CcCCCC----
Q 045705 185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG--NLKSLYYLELTS--NTLSGS---- 256 (365)
Q Consensus 185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~---- 256 (365)
+...+..+++|+.|++++|.-. .++. +. +++|++|++..|.+.......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667788888888877311 2222 33 67888888888877644444443 678888888753 211111
Q ss_pred -CcccC--CCCCCCCEEECCCCcCCCCCCccC---cCCCccceEEeeccccCCcc----hhhcCCCCCCCeEECcCCcCC
Q 045705 257 -IPLPL--GNLTNLVVLELSDNKLSGLIPPSF---GNLTNLTTLYVYKNSIFGSI----LDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 257 -~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~ 326 (365)
+...+ ..+++|++|++.+|.+....+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11112 246778888887777653222222 24677888888888776542 223344677888888888777
Q ss_pred CCchhHhhhccCCCcEEEccCcc
Q 045705 327 GSIPLSLTNLTNSLEVVCLSSNH 349 (365)
Q Consensus 327 ~~~p~~l~~~~~~L~~L~l~~n~ 349 (365)
+..-..+.... ...+++++++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 55444444421 2457777776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=8.8e-10 Score=101.27 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=109.2
Q ss_pred hhhhCCCCCcEEEeeCCcCC---------CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC
Q 045705 187 DEIRSLKSLFNLRLGDNTLS---------GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI 257 (365)
Q Consensus 187 ~~~~~l~~L~~L~ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 257 (365)
.+...+++|+.|.+...... +.++..+..+|+|+.|++++|.-. .++. + .+++|+.|++..|.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 34456678888888765332 123344567899999999988421 2333 3 3889999999988876332
Q ss_pred cccC--CCCCCCCEEECCC--CcCCCC-----CCccC--cCCCccceEEeeccccCCcchhhc---CCCCCCCeEECcCC
Q 045705 258 PLPL--GNLTNLVVLELSD--NKLSGL-----IPPSF--GNLTNLTTLYVYKNSIFGSILDEI---GNLKSLSNINLSLN 323 (365)
Q Consensus 258 ~~~~--~~l~~L~~L~L~~--n~l~~~-----~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N 323 (365)
...+ ..+++|+.|+|+. |...+. +...+ ..+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 2233 3688999999863 221111 11122 247899999999998865443333 35789999999999
Q ss_pred cCCCCch----hHhhhccCCCcEEEccCccccccCC
Q 045705 324 KLNGSIP----LSLTNLTNSLEVVCLSSNHIVGEIP 355 (365)
Q Consensus 324 ~l~~~~p----~~l~~~~~~L~~L~l~~n~l~~~~p 355 (365)
.+++..+ ..+..++ +|+.|++++|.++...-
T Consensus 290 ~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMK 324 (362)
T ss_dssp CCBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHH
T ss_pred CCChHHHHHHHhhcccCC-cceEEECCCCcCCHHHH
Confidence 9986433 3334456 79999999999885433
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=2.2e-09 Score=89.19 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=49.7
Q ss_pred CCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEEC--cCCcCCCCc--
Q 045705 262 GNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINL--SLNKLNGSI-- 329 (365)
Q Consensus 262 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~~~-- 329 (365)
...++|++|+|++|.+... +...+...++|++|+|++|.+.+. +...+...+.|++|+| ++|.+....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555555422 122333445666666666666543 2445556667777777 677776432
Q ss_pred --hhHhhhccCCCcEEEccCcccc
Q 045705 330 --PLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 330 --p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
...+...+ +|++|++++|.+.
T Consensus 142 ~l~~~L~~n~-~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNT-TLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCS-SCCEEECCCSSHH
T ss_pred HHHHHHHhCC-CcCEEeccCCCCC
Confidence 23333334 6777777777765
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=3.2e-09 Score=88.15 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=63.5
Q ss_pred hhhhhCCCCCcEEEeeCC-cCCCc----cCcCCCCCCCCcEEEcccCcCCCcc----hhhhcCCCCCCEEEcccCcCCCC
Q 045705 186 LDEIRSLKSLFNLRLGDN-TLSGS----IPLSLGNLTNLATLYLDSNALSGSI----LNEIGNLKSLYYLELTSNTLSGS 256 (365)
Q Consensus 186 ~~~~~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~ 256 (365)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L---------- 98 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL---------- 98 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE----------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE----------
Confidence 344555667777777776 66532 2333444556666666666665321 2223333444444
Q ss_pred CcccCCCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEe--eccccCCc----chhhcCCCCCCCeEECcCCcCC
Q 045705 257 IPLPLGNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYV--YKNSIFGS----ILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
+|++|.+... +...+...++|++|+| ++|.+.+. +...+...+.|++|+|++|.+.
T Consensus 99 --------------~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 99 --------------NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp --------------ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred --------------ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4444444422 2234445556666666 66666543 2344455577888888877765
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=3.6e-07 Score=85.03 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=111.0
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 272 (365)
.+|+.+.+..+ ++.+...++.++..++.+.+..+... .....|..+..++.+....+.+. ...+..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 44555555432 22234455667777777777666443 44566777777777776655432 346778889999988
Q ss_pred CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705 273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352 (365)
Q Consensus 273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~ 352 (365)
.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++..-..+|..+. +|+.+++..+ ++
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR-LE- 378 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG-GG-
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC-CE-
Confidence 765 66566788999999999999754 65666788999999999999877 6633345666666 7999999865 33
Q ss_pred cCChhhhcCCCC
Q 045705 353 EIPLELRKHSSL 364 (365)
Q Consensus 353 ~~p~~l~~l~~L 364 (365)
.+...|.+|.+|
T Consensus 379 ~~~~~F~~c~~L 390 (394)
T 4fs7_A 379 QYRYDFEDTTKF 390 (394)
T ss_dssp GGGGGBCTTCEE
T ss_pred EhhheecCCCCC
Confidence 456678888766
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=2.4e-06 Score=79.42 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=66.2
Q ss_pred hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705 236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL 315 (365)
Q Consensus 236 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 315 (365)
+|..+..|+.+.+.++... .....|.++..|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445555666655543322 334455666666666664 3344455567777777777777654 444555677777777
Q ss_pred CeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705 316 SNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 316 ~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
+.+.+..+ ++..-..+|..+. +|+.+++.++...
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSRSQ 370 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCHHH
T ss_pred CEEEECcc-cCEEhHhHhhCCC-CCCEEEECCceee
Confidence 77777544 5523334555555 6777777776543
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=2.8e-06 Score=78.92 Aligned_cols=170 Identities=12% Similarity=-0.002 Sum_probs=110.9
Q ss_pred cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCC
Q 045705 184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN 263 (365)
Q Consensus 184 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 263 (365)
+...+|..+..|+.+.+..+... +........+|+.+.+.... .......+..+..|+.+.+..+... .....+..
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~ 274 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN 274 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT
T ss_pred eCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eecccccc
Confidence 33445555555555555443222 11222233456666554332 2233456677777888877766443 45566777
Q ss_pred CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcE
Q 045705 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEV 342 (365)
Q Consensus 264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~ 342 (365)
+..++.+....+.+. ...|..+.+|+.+.+..+ +..+...+|.++.+|+.+++..+ ++ .+ ..+|..+. +|+.
T Consensus 275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~-~L~~ 347 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCT-SLSN 347 (394)
T ss_dssp CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCT-TCCE
T ss_pred ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCC-CCCE
Confidence 788887777665433 357888899999999765 55566788999999999999754 66 44 45666676 7999
Q ss_pred EEccCccccccCChhhhcCCCCC
Q 045705 343 VCLSSNHIVGEIPLELRKHSSLV 365 (365)
Q Consensus 343 L~l~~n~l~~~~p~~l~~l~~L~ 365 (365)
+++..+ ++..-...|.+|.+|+
T Consensus 348 i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 348 INFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp ECCCTT-CCEECTTTBTTCTTCC
T ss_pred EEECcc-ccEehHHHhhCCCCCC
Confidence 999887 6655677899998874
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=7.1e-08 Score=84.33 Aligned_cols=64 Identities=28% Similarity=0.391 Sum_probs=35.5
Q ss_pred hCCCCCcEEEeeCCcCCC--ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCC--CCCEEEcccCcCCC
Q 045705 190 RSLKSLFNLRLGDNTLSG--SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLK--SLYYLELTSNTLSG 255 (365)
Q Consensus 190 ~~l~~L~~L~ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~ 255 (365)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 456667777777777665 2334445566666666666666543 2222222 55555555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=5.8e-07 Score=78.50 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=23.6
Q ss_pred cCCCCCCEEEcccCcCCC--CCcccCCCCCCCCEEECCCCcCCC
Q 045705 238 GNLKSLYYLELTSNTLSG--SIPLPLGNLTNLVVLELSDNKLSG 279 (365)
Q Consensus 238 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 279 (365)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 346667777777776664 222334455555566665555553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=2.7e-07 Score=75.07 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=49.1
Q ss_pred CCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCC----CccceEEeeccc-cCCcchhhcCCCCC
Q 045705 241 KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNL----TNLTTLYVYKNS-IFGSILDEIGNLKS 314 (365)
Q Consensus 241 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 314 (365)
..|++||++++.++..--..+..+++|++|+|++|. ++...-..+..+ ++|++|+|++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777776664433445666677777777664 443222233332 356677776663 65554555566667
Q ss_pred CCeEECcCCc
Q 045705 315 LSNINLSLNK 324 (365)
Q Consensus 315 L~~L~L~~N~ 324 (365)
|++|+|++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.24 E-value=2.4e-05 Score=72.08 Aligned_cols=129 Identities=17% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccc
Q 045705 213 LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292 (365)
Q Consensus 213 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 292 (365)
+..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +......+|.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344445555555433 22233444555556666665543 33233345555556666655432 3333444555666666
Q ss_pred eEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch-hHhhhccCCCcEEEccC
Q 045705 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSS 347 (365)
Q Consensus 293 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~~~~~L~~L~l~~ 347 (365)
.+.+.++.+......+|.++.+|+.+.|..+ ++ .+. .+|..+. +|+.+.+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~-~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCK-ALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCCCCCCT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCC-CCCEEEECC
Confidence 6666555554444556666666666666433 33 232 3334444 455555544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=3.4e-07 Score=74.49 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc-CCCcchhhhcCC----CCCCEEEcccCc-CCCCCcccCCCCCCC
Q 045705 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA-LSGSILNEIGNL----KSLYYLELTSNT-LSGSIPLPLGNLTNL 267 (365)
Q Consensus 194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 267 (365)
.|+.||+++|.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666666664444445566666666666664 544333344443 245566665553 332111223344445
Q ss_pred CEEECCCC
Q 045705 268 VVLELSDN 275 (365)
Q Consensus 268 ~~L~L~~n 275 (365)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=4.6e-06 Score=77.50 Aligned_cols=149 Identities=11% Similarity=0.151 Sum_probs=99.7
Q ss_pred CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272 (365)
Q Consensus 193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 272 (365)
..+..+.+. +.++.+...+|.++.+|+.+.+..+... ....+|.++.+|+.+.+. +.+.......|.++.+|+.+++
T Consensus 242 ~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 344445443 2344355667888889999988766543 556778888999999886 4455455667888999999999
Q ss_pred CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705 273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350 (365)
Q Consensus 273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l 350 (365)
..+ ++.+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... -..+.... +|+.+.+..+.+
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~-~L~~i~i~~~~~ 390 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDS-GLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCC-CC----------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccC-CCCEEEeCCCCE
Confidence 764 66566788999999999999654 65666788999999999999887543 13444454 688888776654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=1.3e-05 Score=73.92 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=106.6
Q ss_pred chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC
Q 045705 185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL 264 (365)
Q Consensus 185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 264 (365)
....+..+.+|+.+.+..+ ++.....+|.++..|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..+
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3445566778888888654 44466677888999999999776 55456678888999999998754 443555678899
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326 (365)
Q Consensus 265 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 326 (365)
.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence 99999999988888777889999999999999754 65566788999999999988655 55
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=1.9e-05 Score=65.30 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCC---cCCCC---
Q 045705 263 NLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLN---KLNGS--- 328 (365)
Q Consensus 263 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~~--- 328 (365)
.-+.|+.|+|++|.+... +...+..-+.|++|+|++|.|.+. +.+++..-+.|++|+|++| .+...
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 334455555555554422 222333445566666666666442 2244455556677777654 33321
Q ss_pred -chhHhhhccCCCcEEEccCcccc
Q 045705 329 -IPLSLTNLTNSLEVVCLSSNHIV 351 (365)
Q Consensus 329 -~p~~l~~~~~~L~~L~l~~n~l~ 351 (365)
+...+..-+ +|+.|+++.|.+.
T Consensus 148 ~ia~aL~~N~-tL~~L~l~~~~~g 170 (197)
T 1pgv_A 148 DMMMAIEENE-SLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHCS-SCCEEECCCCCHH
T ss_pred HHHHHHHhCC-CcCeEeccCCCcc
Confidence 223333333 5777777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=1.7e-05 Score=65.64 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=34.8
Q ss_pred hCCCCCcEEEeeCC-cCCCc----cCcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCC
Q 045705 190 RSLKSLFNLRLGDN-TLSGS----IPLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLS 254 (365)
Q Consensus 190 ~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 254 (365)
..-+.|+.|+|++| .|... +..++..-+.|++|+|++|.|... +...+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456777777764 55421 233344455666666666666532 2223334455666666665554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.002 Score=49.56 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=35.7
Q ss_pred EEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705 245 YLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301 (365)
Q Consensus 245 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 301 (365)
.++.+++.++ ..+|..+ ..+|++|+|++|.|+.+.+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 2344332 23577777777777766666677777777777777765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.66 E-value=0.0037 Score=47.97 Aligned_cols=56 Identities=23% Similarity=0.171 Sum_probs=30.4
Q ss_pred EEEcccCcCC-CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC
Q 045705 221 TLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278 (365)
Q Consensus 221 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 278 (365)
.++.+++.++ ..+|..+ -.+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 2344322 124666666666666444445556666666666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.79 E-value=8.2 Score=27.45 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=20.0
Q ss_pred cccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705 182 SGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD 225 (365)
Q Consensus 182 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls 225 (365)
+.+...+|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3334444555555555555432 232444445555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.43 E-value=11 Score=26.72 Aligned_cols=44 Identities=16% Similarity=0.051 Sum_probs=22.4
Q ss_pred CCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705 205 LSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249 (365)
Q Consensus 205 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 249 (365)
++.+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44444455556666666555443 222334455555555555554
Done!