Query 045706
Match_columns 132
No_of_seqs 107 out of 1067
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00093 nucleoside diphosphat 100.0 1.2E-46 2.6E-51 269.0 13.8 131 1-131 19-149 (149)
2 PRK14542 nucleoside diphosphat 100.0 2.9E-46 6.3E-51 263.6 13.5 120 1-120 18-137 (137)
3 PRK14541 nucleoside diphosphat 100.0 7.3E-46 1.6E-50 262.5 13.6 121 1-121 18-138 (140)
4 PLN02619 nucleoside-diphosphat 100.0 7.8E-46 1.7E-50 279.3 12.6 132 1-132 105-236 (238)
5 PRK14543 nucleoside diphosphat 100.0 1.5E-45 3.3E-50 267.3 12.7 131 1-131 22-167 (169)
6 PRK14545 nucleoside diphosphat 100.0 5.1E-45 1.1E-49 257.9 14.0 119 1-119 20-138 (139)
7 COG0105 Ndk Nucleoside diphosp 100.0 2.6E-45 5.5E-50 253.1 11.9 116 1-116 19-134 (135)
8 PRK14540 nucleoside diphosphat 100.0 3.5E-44 7.5E-49 252.3 13.8 116 1-116 19-134 (134)
9 cd04415 NDPk7A Nucleoside diph 100.0 3.4E-44 7.3E-49 251.5 12.4 114 1-114 15-131 (131)
10 PRK00668 ndk mulitfunctional n 100.0 1.3E-43 2.9E-48 249.4 13.4 116 1-116 18-133 (134)
11 cd04418 NDPk5 Nucleoside dipho 100.0 1.3E-43 2.9E-48 248.8 12.9 115 1-115 15-132 (132)
12 PLN02931 nucleoside diphosphat 100.0 4.7E-43 1E-47 255.9 13.3 119 1-119 46-167 (177)
13 cd04413 NDPk_I Nucleoside diph 100.0 1.2E-42 2.6E-47 243.4 13.0 114 1-114 17-130 (130)
14 cd04414 NDPk6 Nucleoside dipho 100.0 1.8E-42 3.8E-47 244.0 13.2 114 2-115 19-135 (135)
15 cd04412 NDPk7B Nucleoside diph 100.0 1.8E-42 3.9E-47 243.7 12.6 114 1-114 17-134 (134)
16 PF00334 NDK: Nucleoside dipho 100.0 9E-43 2E-47 245.1 10.7 119 1-119 17-135 (135)
17 KOG0888 Nucleoside diphosphate 100.0 1.1E-42 2.3E-47 248.2 9.8 132 1-132 22-156 (156)
18 cd04416 NDPk_TX NDP kinase dom 100.0 3.8E-42 8.2E-47 241.4 12.3 114 1-114 16-132 (132)
19 cd00595 NDPk Nucleoside diphos 100.0 8.6E-42 1.9E-46 239.8 12.5 114 1-114 17-133 (133)
20 smart00562 NDK These are enzym 100.0 3.7E-41 7.9E-46 237.0 13.2 118 1-118 17-134 (135)
21 PRK14544 nucleoside diphosphat 100.0 1E-40 2.2E-45 244.5 13.5 120 1-120 20-182 (183)
22 PF14454 Prok_Ub: Prokaryotic 75.9 2.8 6.1E-05 25.8 2.3 28 22-54 23-50 (65)
23 TIGR03738 PRTRC_C PRTRC system 75.3 1.7 3.7E-05 26.8 1.2 28 22-54 22-49 (66)
24 KOG0328 Predicted ATP-dependen 65.3 23 0.00051 28.5 5.8 88 2-89 154-262 (400)
25 KOG3219 Transcription initiati 46.9 39 0.00085 25.3 4.1 66 22-88 96-175 (195)
26 COG1325 Predicted exosome subu 43.4 22 0.00048 25.5 2.3 25 94-118 13-37 (149)
27 COG1724 Predicted RNA binding 40.8 35 0.00077 21.0 2.6 18 2-19 10-27 (66)
28 PF04339 DUF482: Protein of un 39.4 65 0.0014 26.4 4.7 53 6-58 193-257 (370)
29 PF13076 DUF3940: Protein of u 37.9 28 0.00061 19.0 1.7 32 3-34 5-37 (38)
30 PF07576 BRAP2: BRCA1-associat 35.6 35 0.00076 23.0 2.3 17 24-40 63-79 (110)
31 PF06399 GFRP: GTP cyclohydrol 34.7 37 0.0008 21.9 2.1 19 3-21 54-72 (83)
32 KOG1185 Thiamine pyrophosphate 34.1 1.8E+02 0.0039 25.2 6.5 53 3-69 42-94 (571)
33 PF06130 PduL: Propanediol uti 32.5 39 0.00085 21.0 1.9 20 14-33 4-23 (71)
34 KOG4307 RNA binding protein RB 30.2 98 0.0021 27.9 4.5 29 81-109 895-925 (944)
35 PRK12483 threonine dehydratase 28.2 1.8E+02 0.004 24.9 5.8 54 3-73 401-463 (521)
36 PRK00447 hypothetical protein; 24.6 72 0.0016 22.6 2.4 26 95-120 9-34 (144)
37 PF07927 YcfA: YcfA-like prote 24.5 1.1E+02 0.0023 17.3 2.8 16 3-18 3-18 (56)
38 PF07530 PRE_C2HC: Associated 24.4 91 0.002 19.1 2.5 20 3-22 3-22 (68)
39 COG1504 Uncharacterized conser 24.2 1.6E+02 0.0034 20.2 3.8 53 21-73 47-110 (121)
40 PRK09371 gas vesicle synthesis 23.8 60 0.0013 20.1 1.6 20 2-21 10-29 (68)
41 PRK09224 threonine dehydratase 23.4 2.6E+02 0.0056 23.7 5.9 57 3-76 384-449 (504)
42 TIGR02337 HpaR homoprotocatech 22.6 99 0.0022 20.3 2.7 27 2-28 60-93 (118)
43 cd08029 LA_like_fungal La-moti 21.3 49 0.0011 20.8 0.9 18 103-120 1-18 (76)
44 TIGR02414 pepN_proteo aminopep 21.0 2.6E+02 0.0057 25.6 5.7 43 60-102 752-796 (863)
45 TIGR01124 ilvA_2Cterm threonin 20.3 3E+02 0.0064 23.4 5.6 37 40-76 400-445 (499)
No 1
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=1.2e-46 Score=268.96 Aligned_cols=131 Identities=61% Similarity=1.147 Sum_probs=126.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|+++|+|||+++|+++|+|||++||+++||+||..|.
T Consensus 19 ~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~nav~~~R~l~Gpt~p~~a~ 98 (149)
T PTZ00093 19 VGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESA 98 (149)
T ss_pred hHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHhCCCCccccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 131 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 131 (132)
|+|||+.||++.++|+|||||++++|.+|++|||++.++.+|......++|
T Consensus 99 p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 99 PGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred CCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 999999999999999999999999999999999999999999876666543
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.9e-46 Score=263.62 Aligned_cols=120 Identities=43% Similarity=0.705 Sum_probs=117.2
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|+|+|||++||+++||+||..|.
T Consensus 18 ~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~ 97 (137)
T PRK14542 18 VGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAA 97 (137)
T ss_pred hHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCCchhCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~ 120 (132)
|+|||++||.+.++|+|||||++++|.+|++||||+.+++
T Consensus 98 p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~~ 137 (137)
T PRK14542 98 AGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNELF 137 (137)
T ss_pred CCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhhcC
Confidence 9999999999999999999999999999999999987753
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=7.3e-46 Score=262.47 Aligned_cols=121 Identities=40% Similarity=0.698 Sum_probs=118.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.++|||++|+++|+|||+++|+|+|+|||++||+++||+||..|.
T Consensus 18 ~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A~ 97 (140)
T PRK14541 18 IGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAA 97 (140)
T ss_pred hHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcHHHHHHHHhCCCCchhCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQ 121 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~ 121 (132)
|+|||++||.+.++|+|||||++++|.+|++||||+.++.+
T Consensus 98 p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~~~ 138 (140)
T PRK14541 98 EGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEVVR 138 (140)
T ss_pred CCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhhcc
Confidence 99999999999999999999999999999999999988743
No 4
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=7.8e-46 Score=279.31 Aligned_cols=132 Identities=55% Similarity=1.046 Sum_probs=129.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|+|++||+++||+||..+.
T Consensus 105 vGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~GenaV~~~R~LiGpTdP~~A~ 184 (238)
T PLN02619 105 ISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSE 184 (238)
T ss_pred hHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCCccccC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+.++|+|||||++++|.+|++|||++.++.+|++....|+|+
T Consensus 185 PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~ 236 (238)
T PLN02619 185 PGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYG 236 (238)
T ss_pred CCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhcc
Confidence 9999999999999999999999999999999999999999999999999874
No 5
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.5e-45 Score=267.30 Aligned_cols=131 Identities=35% Similarity=0.642 Sum_probs=126.3
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHH-----HhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYK-----DLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTD 75 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~-----~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~ 75 (132)
+|+||++|+++||+|+++||++||+++|++||. +|.+++||++|+++|+|||+++|+|+|+|||++||+++||++
T Consensus 22 ~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl~g~naI~~~R~l~Gpt~ 101 (169)
T PRK14543 22 IGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTE 101 (169)
T ss_pred hHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEEECCCHHHHHHHHhCCCC
Confidence 599999999999999999999999999999995 789999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcccc----------cCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhc
Q 045706 76 PLQAEPGTIRGDLAVQ----------TGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 131 (132)
Q Consensus 76 p~~a~p~slR~~~g~~----------~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 131 (132)
|..|.|+|||+.||.+ .++|+|||||++++|.||++||||+.++.+|+.....|.|
T Consensus 102 p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 167 (169)
T PRK14543 102 PKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDDECEHY 167 (169)
T ss_pred ccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccccccccccceeEe
Confidence 9999999999999987 7899999999999999999999999999999998888876
No 6
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.1e-45 Score=257.94 Aligned_cols=119 Identities=37% Similarity=0.617 Sum_probs=116.5
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|.++|||++|+++|+|||+++|+|.|+|+|++||+++||+||..|.
T Consensus 20 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~nav~~~R~l~Gpt~p~~A~ 99 (139)
T PRK14545 20 IGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENAVEDFRTLIGATNPADAA 99 (139)
T ss_pred HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCHHHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
|+|||+.||.+.++|++||||++++|.+|++||||+.+.
T Consensus 100 p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 138 (139)
T PRK14545 100 EGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGREM 138 (139)
T ss_pred CCChhHHhcccccceeEECCCCHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999998764
No 7
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=253.14 Aligned_cols=116 Identities=58% Similarity=1.022 Sum_probs=114.7
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++++++||+|+++||+++++++|.+||..|+++|||++|+++|+|||+++++|+|+|||+.+|.++|+|||..|.
T Consensus 19 IG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~ai~~~R~l~GaTnp~~A~ 98 (135)
T COG0105 19 IGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENAISVVRKLMGATNPANAA 98 (135)
T ss_pred HHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhHHHHHHHHHCCCCcccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~ 116 (132)
|||||+.||.+..+|+|||||++++|+||+.|||++
T Consensus 99 pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 99 PGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred CCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 999999999999999999999999999999999986
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.5e-44 Score=252.34 Aligned_cols=116 Identities=46% Similarity=0.876 Sum_probs=114.2
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|+++|+|||+++|+|.|+|+|++||+++||++|..|.
T Consensus 19 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~nav~~~R~l~Gpt~p~~a~ 98 (134)
T PRK14540 19 IGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAE 98 (134)
T ss_pred hHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCChHHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~ 116 (132)
|+|||+.||.+.++|++||||++++|.+|++|||++
T Consensus 99 p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 99 PGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred CCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999985
No 9
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=3.4e-44 Score=251.52 Aligned_cols=114 Identities=35% Similarity=0.661 Sum_probs=112.3
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|+++||+|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+|+|++||+++||+||..|
T Consensus 15 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav~~~R~l~Gpt~p~~A~ 94 (131)
T cd04415 15 IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVAR 94 (131)
T ss_pred HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcC
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF 114 (132)
.|+|||++||.+.++|+|||||++++|.+|+++||
T Consensus 95 ~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 95 SDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred ccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 79999999999999999999999999999999998
No 10
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=1.3e-43 Score=249.36 Aligned_cols=116 Identities=58% Similarity=1.020 Sum_probs=114.2
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.+++||+.|+++|+|||+++|+|.|+|||++||+++||+||..+.
T Consensus 18 ~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~ 97 (134)
T PRK00668 18 IGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAA 97 (134)
T ss_pred HHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchHHHHHHHHhCCCCccccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~ 116 (132)
|+|||+.||.+.++|+|||||++++|.+|++||||+
T Consensus 98 p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 98 PGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred CCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999986
No 11
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.3e-43 Score=248.83 Aligned_cols=115 Identities=31% Similarity=0.559 Sum_probs=113.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|+++||+|+++||++||+++|++||.+|.+++||+.|+++|+|||+++|+|.|+|+|++||+++||+||..|
T Consensus 15 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV~~~R~l~Gpt~p~~A~ 94 (132)
T cd04418 15 AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAISYWKELLGPTNSLKAK 94 (132)
T ss_pred HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHHHHHHHHHCCCChHHhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCC
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK 115 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~ 115 (132)
.|+|||+.||.+.++|+|||||++++|.+|++||||
T Consensus 95 ~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 95 ETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred cCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999997
No 12
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=4.7e-43 Score=255.94 Aligned_cols=119 Identities=37% Similarity=0.604 Sum_probs=115.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|+++||+|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|+|+|||++||+++||+||..|
T Consensus 46 ~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~liGptdp~~A~ 125 (177)
T PLN02931 46 TERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTDARKAK 125 (177)
T ss_pred HHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHhCCCChhhhc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
.|+|||++||.+.++|++||||++++|++|++||||....
T Consensus 126 ~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~ 167 (177)
T PLN02931 126 ISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSS 167 (177)
T ss_pred cCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCcccc
Confidence 5999999999999999999999999999999999997554
No 13
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.2e-42 Score=243.38 Aligned_cols=114 Identities=60% Similarity=1.083 Sum_probs=112.5
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|.++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|+|++||+++||+||..+.
T Consensus 17 ~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav~~~r~l~Gp~~~~~a~ 96 (130)
T cd04413 17 IGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAA 96 (130)
T ss_pred HHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHHHHHHHHhCCCCccccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF 114 (132)
|+|||++||.+.++|++||||++++|.+|++|||
T Consensus 97 p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 97 PGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred CCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999998
No 14
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.8e-42 Score=243.95 Aligned_cols=114 Identities=31% Similarity=0.557 Sum_probs=110.4
Q ss_pred hHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC--
Q 045706 2 GEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA-- 79 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a-- 79 (132)
|.|++.|+++||.|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|||++||+++||+||..|
T Consensus 19 ~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~naV~~~r~l~Gp~~p~~A~~ 98 (135)
T cd04414 19 EAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARA 98 (135)
T ss_pred HHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCHHHHHHHHhCCCChhHhcc
Confidence 567777889999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred -CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCC
Q 045706 80 -EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK 115 (132)
Q Consensus 80 -~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~ 115 (132)
.|+|||++||++.++|++||||++++|.+|++||||
T Consensus 99 ~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 99 SAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred CCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999997
No 15
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=1.8e-42 Score=243.65 Aligned_cols=114 Identities=31% Similarity=0.592 Sum_probs=112.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCC-CChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSK-PFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~-~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a 79 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.++ +||+.++++|+|||+++|+|.|+|||++||+++||+||..|
T Consensus 17 ~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~nav~~~r~l~Gpt~p~~A 96 (134)
T cd04412 17 LGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENAVKTFREFCGPFDPEIA 96 (134)
T ss_pred hHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcHHHHHHHHhCCCChHHh
Confidence 58999999999999999999999999999999999999 99999999999999999999999999999999999999888
Q ss_pred ---CCCChhhhcccccCCceEEcCCChhHHHHHHhhcC
Q 045706 80 ---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114 (132)
Q Consensus 80 ---~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF 114 (132)
.|+|||+.||.+.++|+|||||++++|.+|++|||
T Consensus 97 ~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 97 KQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred cccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 79999999999999999999999999999999998
No 16
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=9e-43 Score=245.07 Aligned_cols=119 Identities=43% Similarity=0.802 Sum_probs=110.3
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|.++||.|+++||++||+++|++||..+.++++|+.++++|+|||+++|+|+|+|||++||+++||+||..|.
T Consensus 17 ~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av~~~r~l~Gp~dp~~a~ 96 (135)
T PF00334_consen 17 AGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAVEKWRQLCGPTDPEEAA 96 (135)
T ss_dssp HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSGGGSS
T ss_pred hHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhhHHHHHhcCCcchhhhc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
|+|||++||.+..+|++||||++++|.||+.||||+.++
T Consensus 97 p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 97 PGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFEI 135 (135)
T ss_dssp TTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGGS
T ss_pred cccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcccC
Confidence 999999999999999999999999999999999998763
No 17
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=248.24 Aligned_cols=132 Identities=58% Similarity=0.993 Sum_probs=128.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||.+++++||+|++.||++++++++++||.+++++|||+.|+.+|+|||++||+++|.|||+.||+++||++|..|
T Consensus 22 i~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~V~~~r~llG~t~~~~a~ 101 (156)
T KOG0888|consen 22 IGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNVVQYWRALLGPTNPAAAR 101 (156)
T ss_pred hHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCHHHHHHHHhCCCCccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
.|+|||++||.+..+|++||||+.++|+|||.+|||..++..|......|.++
T Consensus 102 ~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 102 AAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred ccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 89999999999999999999999999999999999999999999988888764
No 18
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=3.8e-42 Score=241.41 Aligned_cols=114 Identities=32% Similarity=0.624 Sum_probs=112.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|.++||.|+++||++||+++|++||..|.+++||++++++|+|||+++|+|.|+|+|++||+++||++|..|
T Consensus 16 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av~~~r~l~Gp~~p~~A~ 95 (132)
T cd04416 16 KDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAVEEWRELMGPTDPEEAK 95 (132)
T ss_pred HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHhCCCChHHhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcC
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF 114 (132)
.|+|||+.||.+.++|++||||++++|.+|++|||
T Consensus 96 ~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 96 EEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred ccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 79999999999999999999999999999999998
No 19
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=8.6e-42 Score=239.82 Aligned_cols=114 Identities=42% Similarity=0.795 Sum_probs=111.5
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|+++||.|+++||++||+++|++||.+|.+++||++++++|+|||+++|+|.|+|||++||+++||+||..|
T Consensus 17 ~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av~~~r~l~Gp~~p~~a~ 96 (133)
T cd00595 17 LGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIAR 96 (133)
T ss_pred HHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChHHHHHHHhCCCChhHhc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcC
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF 114 (132)
.|+|||+.||.+.++|+|||||++++|.+|++|||
T Consensus 97 ~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 97 HLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred cCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 69999999999999999999999999999999998
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=3.7e-41 Score=236.97 Aligned_cols=118 Identities=57% Similarity=1.003 Sum_probs=115.2
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|.++||.|+++||++||+++|++||..+.++++|+.++++|+|||+++|+|.|+|+|++||+++||++|..+.
T Consensus 17 ~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav~~~r~l~Gp~~~~~~~ 96 (135)
T smart00562 17 IGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAA 96 (135)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHHHHHHHHhCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 118 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~ 118 (132)
|+|||++||.+.++|+|||||++++|.+|+++|||..+
T Consensus 97 p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~~ 134 (135)
T smart00562 97 PGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPESE 134 (135)
T ss_pred CcchHHhhcccccceeEECCCCHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999865
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1e-40 Score=244.52 Aligned_cols=120 Identities=46% Similarity=0.806 Sum_probs=114.2
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHh---------------------------------cCCCChHHHHHH
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDL---------------------------------NSKPFFPKLIEY 47 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~---------------------------------~~~~~~~~l~~~ 47 (132)
+|+||++|+++||+|+++||++||+++|++||..+ .+++||+.|+++
T Consensus 20 ~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~Lv~~ 99 (183)
T PRK14544 20 VGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKY 99 (183)
T ss_pred HHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccCCchhHHHHHH
Confidence 48999999999999999999999999999999954 678999999999
Q ss_pred hcCCceEEEEEecCchHHHHHHhhCCCCCCCCCCCChhhhccccc----------CCceEEcCCChhHHHHHHhhcCCCC
Q 045706 48 ITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQT----------GRNVVHGSDSPENGKREIGLWFKEG 117 (132)
Q Consensus 48 ~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~p~slR~~~g~~~----------~~N~vh~Sd~~~~a~~e~~~fF~~~ 117 (132)
|+|||+++|+|.|+|||++||++|||++|..|.|+|||+.||.+. ++|+|||||++++|.+|++|||++.
T Consensus 100 m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~Sds~e~A~rEi~~fF~~~ 179 (183)
T PRK14544 100 MTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFREE 179 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCChh
Confidence 999999999999999999999999999999999999999999874 7999999999999999999999998
Q ss_pred ccc
Q 045706 118 ELC 120 (132)
Q Consensus 118 ~~~ 120 (132)
++.
T Consensus 180 ~~~ 182 (183)
T PRK14544 180 EIL 182 (183)
T ss_pred hcc
Confidence 764
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=75.86 E-value=2.8 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHhcCCCChHHHHHHhcCCceE
Q 045706 22 QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVV 54 (132)
Q Consensus 22 ~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv 54 (132)
.|++++++.||... ||+|...-..||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 58999999999875 89999888889876
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=75.30 E-value=1.7 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHhcCCCChHHHHHHhcCCceE
Q 045706 22 QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVV 54 (132)
Q Consensus 22 ~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv 54 (132)
.||+++.++||... ||+|...-.+||++
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 67899999999874 89998888888876
No 24
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=65.32 E-value=23 Score=28.53 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=51.9
Q ss_pred hHHHHHHHHcCCeEEeeEeecCCHHHH-------HHHHHHhcCCC----------ChHH----HHHHhcCCceEEEEEec
Q 045706 2 GEIISRFEKKGFKLIGLKLFQCPKDLA-------EEHYKDLNSKP----------FFPK----LIEYITSGPVVCMAWEG 60 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~~~km~~ls~e~a-------~~~y~~~~~~~----------~~~~----l~~~~~sGpvv~l~l~g 60 (132)
|.|++.|+...+.-.+.||+.|++.+- .+.|..++--| -++. +.+.+..-|+-.++-.-
T Consensus 154 Grv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 154 GRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred chHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 889999999999999999999998764 33455554322 1222 33444456777665444
Q ss_pred CchHHHHHHhhCCCCCCCCCCCChhhhcc
Q 045706 61 AGVVASARKLIGSTDPLQAEPGTIRGDLA 89 (132)
Q Consensus 61 ~nav~~~r~l~G~~~p~~a~p~slR~~~g 89 (132)
+-..+-.+++.=..+.++++-.+|-..|.
T Consensus 234 eltlEgIKqf~v~ve~EewKfdtLcdLYd 262 (400)
T KOG0328|consen 234 ELTLEGIKQFFVAVEKEEWKFDTLCDLYD 262 (400)
T ss_pred CCchhhhhhheeeechhhhhHhHHHHHhh
Confidence 43444444443333333333444545554
No 25
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=46.89 E-value=39 Score=25.27 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHhcCCCC----hHHHHHHhcCC---ceEEEEEecC------chHHHHHHhhCCCCCCCC-CCCChhhh
Q 045706 22 QCPKDLAEEHYKDLNSKPF----FPKLIEYITSG---PVVCMAWEGA------GVVASARKLIGSTDPLQA-EPGTIRGD 87 (132)
Q Consensus 22 ~ls~e~a~~~y~~~~~~~~----~~~l~~~~~sG---pvv~l~l~g~------nav~~~r~l~G~~~p~~a-~p~slR~~ 87 (132)
.||+++..+ |+.++...| ...|+..++++ +-+++.+.|- ..|+..+.+++...-.-. .|.-||..
T Consensus 96 ~fseEQl~R-YEvfRrs~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA 174 (195)
T KOG3219|consen 96 NFSEEQLSR-YEVFRRSAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREA 174 (195)
T ss_pred hcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 466666665 555554433 34466667755 4566666663 455655555532221111 36777766
Q ss_pred c
Q 045706 88 L 88 (132)
Q Consensus 88 ~ 88 (132)
|
T Consensus 175 ~ 175 (195)
T KOG3219|consen 175 Y 175 (195)
T ss_pred H
Confidence 5
No 26
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=43.38 E-value=22 Score=25.47 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.7
Q ss_pred CceEEcCCChhHHHHHHhhcCCCCc
Q 045706 94 RNVVHGSDSPENGKREIGLWFKEGE 118 (132)
Q Consensus 94 ~N~vh~Sd~~~~a~~e~~~fF~~~~ 118 (132)
+=.+|++.+++-+..-+..|||+.-
T Consensus 13 rv~iHaTED~~kV~eAL~~~~p~~~ 37 (149)
T COG1325 13 RVIIHATEDEEKVLEALENFFPEAI 37 (149)
T ss_pred EEEEEccCCHHHHHHHHHHhcCccc
Confidence 3469999999999999999999743
No 27
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=40.80 E-value=35 Score=21.04 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=16.2
Q ss_pred hHHHHHHHHcCCeEEeeE
Q 045706 2 GEIISRFEKKGFKLIGLK 19 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~~~k 19 (132)
.++|..|++.||..++.|
T Consensus 10 ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 10 KEVIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 478999999999999988
No 28
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=39.35 E-value=65 Score=26.43 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=38.7
Q ss_pred HHHHHcCCeEEeeEeecCCHHHHHHHHHHhcC------------CCChHHHHHHhcCCceEEEEE
Q 045706 6 SRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNS------------KPFFPKLIEYITSGPVVCMAW 58 (132)
Q Consensus 6 ~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~------------~~~~~~l~~~~~sGpvv~l~l 58 (132)
.++.++|++|....--.+++++...||.-+.. ..||..+.+.|...-++++..
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~ 257 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVAR 257 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEE
Confidence 45667899999998889999998777665443 256888888887665555544
No 29
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=37.88 E-value=28 Score=19.04 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=23.0
Q ss_pred HHHHHHHHcC-CeEEeeEeecCCHHHHHHHHHH
Q 045706 3 EIISRFEKKG-FKLIGLKLFQCPKDLAEEHYKD 34 (132)
Q Consensus 3 ~Ii~~i~~~G-f~I~~~km~~ls~e~a~~~y~~ 34 (132)
.+|++|.+.| |+......-.+|-++.+..|..
T Consensus 5 ~lI~~Li~~Giyk~~drqL~Eltl~ELe~ey~~ 37 (38)
T PF13076_consen 5 FLIEKLIQSGIYKKEDRQLYELTLSELEKEYER 37 (38)
T ss_pred HHHHHHHHcCCcCccchHHHHcCHHHHHHHHHc
Confidence 4789999999 4555533677888888777753
No 30
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=35.63 E-value=35 Score=23.02 Aligned_cols=17 Identities=41% Similarity=0.896 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhcCCCC
Q 045706 24 PKDLAEEHYKDLNSKPF 40 (132)
Q Consensus 24 s~e~a~~~y~~~~~~~~ 40 (132)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 67889999999999987
No 31
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=34.72 E-value=37 Score=21.87 Aligned_cols=19 Identities=21% Similarity=0.593 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCeEEeeEee
Q 045706 3 EIISRFEKKGFKLIGLKLF 21 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~ 21 (132)
.||++|+..||+++.+.-+
T Consensus 54 ~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 54 VVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHhcCeEEEEEecc
Confidence 5899999999999988644
No 32
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=34.11 E-value=1.8e+02 Score=25.21 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHH
Q 045706 3 EIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARK 69 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~ 69 (132)
+|....++.|++++.+| -|++.-+- .+-+-|+++-|-+++++.|+..+..+--
T Consensus 42 el~~aaqalGIk~I~~R-----nEqaA~yA---------A~A~gyLt~kpGV~lVvsGPGl~hal~g 94 (571)
T KOG1185|consen 42 ELAVAAQALGIKFIGTR-----NEQAAVYA---------ASAYGYLTGKPGVLLVVSGPGLTHALAG 94 (571)
T ss_pred HHHHHHHHcCCeEeecc-----cHHHHHHH---------HHHhhhhcCCCeEEEEecCChHHHHHHH
Confidence 46677788888888877 45554432 3346788989999999999866554433
No 33
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=32.48 E-value=39 Score=21.04 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=17.8
Q ss_pred eEEeeEeecCCHHHHHHHHH
Q 045706 14 KLIGLKLFQCPKDLAEEHYK 33 (132)
Q Consensus 14 ~I~~~km~~ls~e~a~~~y~ 33 (132)
.|++.|-++||+++|+.|+.
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 57889999999999999865
No 34
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=30.16 E-value=98 Score=27.93 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred CCChhhhccccc--CCceEEcCCChhHHHHH
Q 045706 81 PGTIRGDLAVQT--GRNVVHGSDSPENGKRE 109 (132)
Q Consensus 81 p~slR~~~g~~~--~~N~vh~Sd~~~~a~~e 109 (132)
|++||-+|+.+. +..+.-+-++.++|.+-
T Consensus 895 p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A 925 (944)
T KOG4307|consen 895 PNSIRIRRNDDGVPTGECMVAFESQEEARRA 925 (944)
T ss_pred CCceeEeecCCCCcccceeEeecCHHHHHhh
Confidence 777877777664 56677777888887663
No 35
>PRK12483 threonine dehydratase; Reviewed
Probab=28.21 E-value=1.8e+02 Score=24.93 Aligned_cols=54 Identities=17% Similarity=0.376 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCc--------eEEEEE-ecCchHHHHHHhhCC
Q 045706 3 EIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGP--------VVCMAW-EGAGVVASARKLIGS 73 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGp--------vv~l~l-~g~nav~~~r~l~G~ 73 (132)
+|++.|++.||.+..+ +..+ .+..++.||..|. +.+..+ +.+.+..++-+.+|+
T Consensus 401 ~i~~~l~~~g~~~~dl-----sdne------------~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~ 463 (521)
T PRK12483 401 QLLASLRAQGFPVLDL-----TDDE------------LAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP 463 (521)
T ss_pred HHHHHHHHCCCCeEEC-----CCCH------------HHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC
Confidence 5677777777766533 2322 2344567777662 445555 678888888888886
No 36
>PRK00447 hypothetical protein; Provisional
Probab=24.63 E-value=72 Score=22.59 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.3
Q ss_pred ceEEcCCChhHHHHHHhhcCCCCccc
Q 045706 95 NVVHGSDSPENGKREIGLWFKEGELC 120 (132)
Q Consensus 95 N~vh~Sd~~~~a~~e~~~fF~~~~~~ 120 (132)
=-+|.+++.+-+..-+..+||+.++.
T Consensus 9 a~v~~TED~eKV~~Ai~Nifp~~~ie 34 (144)
T PRK00447 9 AEVRPTEDEEKVKKAILNFFDFEKFE 34 (144)
T ss_pred EEEeCCCCHHHHHHHHHhhCCcceEE
Confidence 35899999999999999999987754
No 37
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=24.48 E-value=1.1e+02 Score=17.27 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCeEEee
Q 045706 3 EIISRFEKKGFKLIGL 18 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~ 18 (132)
+++..|++.||.+...
T Consensus 3 el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHCCCEEecC
Confidence 5788889999998864
No 38
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.38 E-value=91 Score=19.05 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCeEEeeEeec
Q 045706 3 EIISRFEKKGFKLIGLKLFQ 22 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~~ 22 (132)
.|.+.|++.||.+..+.-+.
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~ 22 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMH 22 (68)
T ss_pred HHHHHHHHcCCceEEEEccc
Confidence 68999999999999776543
No 39
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=1.6e+02 Score=20.24 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=34.3
Q ss_pred ecCCHHHHHHHHHHhcCC-----------CChHHHHHHhcCCceEEEEEecCchHHHHHHhhCC
Q 045706 21 FQCPKDLAEEHYKDLNSK-----------PFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGS 73 (132)
Q Consensus 21 ~~ls~e~a~~~y~~~~~~-----------~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~ 73 (132)
..|+.++++++|.+..+. ..-++..+++.+--+-+.++..+.||+.|.++-|.
T Consensus 47 Hkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 47 HKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred cccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 467888888888754431 11244445555555556677777888888888764
No 40
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=23.78 E-value=60 Score=20.09 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.3
Q ss_pred hHHHHHHHHcCCeEEeeEee
Q 045706 2 GEIISRFEKKGFKLIGLKLF 21 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~~~km~ 21 (132)
.++|+++.++|..|.+--.+
T Consensus 10 advldriLDKGiVI~adi~V 29 (68)
T PRK09371 10 AEVIDRILDKGIVVDAWVRV 29 (68)
T ss_pred HHHHHHHccCCeEEEEEEEE
Confidence 47899999999888664444
No 41
>PRK09224 threonine dehydratase; Reviewed
Probab=23.37 E-value=2.6e+02 Score=23.73 Aligned_cols=57 Identities=18% Similarity=0.360 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCce--E------EEEE-ecCchHHHHHHhhCC
Q 045706 3 EIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPV--V------CMAW-EGAGVVASARKLIGS 73 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpv--v------~l~l-~g~nav~~~r~l~G~ 73 (132)
+|++.|++.|+.+..+ |. .+.+..++.||..|.. + ..++ +.+.|..++-+.+||
T Consensus 384 ~i~~~L~~~gy~~~~l-----s~------------ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~~ 446 (504)
T PRK09224 384 EIIAQLRAHGYPVVDL-----SD------------DELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLGT 446 (504)
T ss_pred HHHHHHHHcCCCeEEC-----CC------------CHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcCC
Confidence 4666666666665543 22 2234456788887732 2 2222 578999999999997
Q ss_pred CCC
Q 045706 74 TDP 76 (132)
Q Consensus 74 ~~p 76 (132)
.+.
T Consensus 447 ~~~ 449 (504)
T PRK09224 447 HWN 449 (504)
T ss_pred CCe
Confidence 653
No 42
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=22.56 E-value=99 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=21.3
Q ss_pred hHHHHHHHHcCCeEE-------eeEeecCCHHHH
Q 045706 2 GEIISRFEKKGFKLI-------GLKLFQCPKDLA 28 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~-------~~km~~ls~e~a 28 (132)
-.+|++|++.|+... +.+++.||++=-
T Consensus 60 s~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~ 93 (118)
T TIGR02337 60 TGILARLERDGLVTRLKASNDQRRVYISLTPKGQ 93 (118)
T ss_pred HHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHH
Confidence 357899999999887 557889988643
No 43
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=21.32 E-value=49 Score=20.80 Aligned_cols=18 Identities=22% Similarity=0.650 Sum_probs=14.3
Q ss_pred hhHHHHHHhhcCCCCccc
Q 045706 103 PENGKREIGLWFKEGELC 120 (132)
Q Consensus 103 ~~~a~~e~~~fF~~~~~~ 120 (132)
++...++++|+|...||.
T Consensus 1 ~~~I~~QvEfYFSd~NL~ 18 (76)
T cd08029 1 PEEIRKQVEFYFSDSNLP 18 (76)
T ss_pred ChHHHhhHHhhcCHhhhc
Confidence 356678999999988874
No 44
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=21.03 E-value=2.6e+02 Score=25.62 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.7
Q ss_pred cCchHHHHHHhhCCCCCCCCCCCChhhhcccccCCc--eEEcCCC
Q 045706 60 GAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRN--VVHGSDS 102 (132)
Q Consensus 60 g~nav~~~r~l~G~~~p~~a~p~slR~~~g~~~~~N--~vh~Sd~ 102 (132)
.+++++.+++|+...+=....|+.+|+.+|.=...| .+|..|.
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g 796 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISG 796 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCC
Confidence 568899999998644434457999999998654455 4776554
No 45
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.26 E-value=3e+02 Score=23.43 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=25.3
Q ss_pred ChHHHHHHhcCCce--E----EEEE---ecCchHHHHHHhhCCCCC
Q 045706 40 FFPKLIEYITSGPV--V----CMAW---EGAGVVASARKLIGSTDP 76 (132)
Q Consensus 40 ~~~~l~~~~~sGpv--v----~l~l---~g~nav~~~r~l~G~~~p 76 (132)
.+..++.||..|.. + ...+ +.+.|..++.+.+||.+.
T Consensus 400 ~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~~~~ 445 (499)
T TIGR01124 400 LAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQGYWN 445 (499)
T ss_pred HHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCCCCc
Confidence 35556788887732 1 1222 478999999999998774
Done!