Query 045706
Match_columns 132
No_of_seqs 107 out of 1067
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8u_A Nucleoside diphosphate 100.0 3.8E-51 1.3E-55 292.8 13.9 132 1-132 18-149 (157)
2 4fkx_A NDK B, nucleoside dipho 100.0 3.1E-51 1.1E-55 294.0 13.0 132 1-132 28-159 (161)
3 3l7u_A Nucleoside diphosphate 100.0 1.4E-50 4.9E-55 293.1 13.1 132 1-132 41-172 (172)
4 3r9l_A Nucleoside diphosphate 100.0 5.4E-51 1.8E-55 291.6 10.2 132 1-132 24-155 (155)
5 3fkb_A NDP kinase, NDK, nucleo 100.0 2.3E-50 7.9E-55 288.3 12.8 131 1-132 25-155 (155)
6 3mpd_A Nucleoside diphosphate 100.0 4.3E-50 1.5E-54 285.9 13.8 129 1-131 22-151 (151)
7 1s57_A Nucleoside diphosphate 100.0 6.9E-50 2.4E-54 285.6 14.1 132 1-132 22-153 (153)
8 1xiq_A Nucleoside diphosphate 100.0 4.8E-50 1.6E-54 287.2 13.3 132 1-132 26-157 (157)
9 3js9_A Nucleoside diphosphate 100.0 3E-50 1E-54 287.8 12.0 131 1-131 26-156 (156)
10 2vu5_A Nucleoside diphosphate 100.0 5E-50 1.7E-54 285.0 13.0 131 1-131 18-148 (148)
11 3bbb_A Nucleoside diphosphate 100.0 6.3E-50 2.2E-54 285.3 13.1 132 1-132 20-151 (151)
12 1nb2_A Nucleoside diphosphate 100.0 4.5E-50 1.5E-54 285.7 12.3 132 1-132 19-150 (150)
13 1u8w_A Nucleoside diphosphate 100.0 2.7E-49 9.2E-54 281.5 13.7 131 1-132 18-148 (149)
14 3b54_A NDK, NDP kinase, nucleo 100.0 1E-49 3.6E-54 286.5 11.6 132 1-132 30-161 (161)
15 4hr2_A Nucleoside diphosphate 100.0 2.1E-49 7.2E-54 280.5 13.0 121 1-121 24-144 (145)
16 1pku_A Nucleoside diphosphate 100.0 2E-49 6.9E-54 282.4 12.9 131 1-132 19-149 (150)
17 1zs6_A Nucleoside diphosphate 100.0 3.1E-49 1.1E-53 285.9 12.5 132 1-132 38-169 (169)
18 2hur_A NDK, nucleoside diphosp 100.0 8.1E-49 2.8E-53 277.1 13.7 123 1-123 19-141 (142)
19 2az3_A Nucleoside diphosphate 100.0 7.3E-49 2.5E-53 282.8 13.7 132 1-132 25-158 (164)
20 2dxe_A Nucleoside diphosphate 100.0 4.6E-49 1.6E-53 283.1 12.5 131 1-132 24-157 (160)
21 1w7w_A Nucleoside diphosphate 100.0 4.6E-49 1.6E-53 287.7 12.6 132 1-132 49-180 (182)
22 1nhk_R Nucleoside diphosphate 100.0 8E-49 2.7E-53 277.6 12.7 124 1-124 19-142 (144)
23 4dz6_A Nucleoside diphosphate 100.0 6.4E-49 2.2E-53 288.4 10.2 132 1-132 43-189 (190)
24 3evo_A NDP kinase, NDK, nucleo 100.0 6.8E-48 2.3E-52 273.2 13.3 120 1-120 23-143 (146)
25 3ztp_A Nucleoside diphosphate 100.0 3.5E-48 1.2E-52 273.8 10.5 120 1-120 20-142 (142)
26 1ehw_A NDPK H4, nucleoside dip 100.0 9E-48 3.1E-52 276.5 12.8 122 1-122 41-162 (162)
27 1wkj_A Nucleoside diphosphate 100.0 1.2E-47 4E-52 269.8 13.0 119 1-119 18-136 (137)
28 1k44_A Nucleoside diphosphate 100.0 7.5E-47 2.6E-51 265.4 13.7 116 1-116 19-135 (136)
29 1xqi_A Nucleoside diphosphate 100.0 2E-43 6.9E-48 260.6 8.6 121 1-121 32-195 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 1.7E-29 5.7E-34 200.5 7.3 95 1-117 252-346 (352)
31 1jg5_A GTP cyclohydrolase I fe 34.8 30 0.001 21.3 2.6 19 3-21 54-72 (83)
32 3i5g_C Myosin catalytic light 34.0 25 0.00085 23.3 2.4 32 22-53 117-154 (159)
33 1whz_A Hypothetical protein; a 29.4 50 0.0017 18.9 2.9 17 3-19 9-25 (70)
34 3d7a_A UPF0201 protein PH1010; 27.6 29 0.001 23.3 1.8 25 95-119 12-36 (138)
35 1tbx_A ORF F-93, hypothetical 26.3 63 0.0021 19.3 3.2 26 2-27 44-73 (99)
36 3bkw_A MLL3908 protein, S-aden 25.4 1E+02 0.0035 21.0 4.5 28 2-29 195-222 (243)
37 1nkz_B Light-harvesting protei 24.4 51 0.0017 17.6 2.0 13 23-35 3-15 (41)
38 2ogk_A Hypothetical protein; a 22.8 58 0.002 22.0 2.6 22 95-116 13-34 (146)
39 3c9g_A UPF0200/UPF0201 protein 21.8 37 0.0013 22.9 1.5 26 94-119 13-38 (142)
40 2nwu_A UPF0201 protein SSO1042 20.6 50 0.0017 22.7 1.9 26 95-120 10-35 (155)
41 2pzz_A UPF0201 protein MJ1564; 20.4 48 0.0017 22.5 1.8 24 96-119 9-32 (147)
42 1lgh_B LH II, B800/850, light 20.3 68 0.0023 17.5 2.0 14 22-35 7-20 (45)
No 1
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=3.8e-51 Score=292.78 Aligned_cols=132 Identities=52% Similarity=0.947 Sum_probs=130.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+||||++|+|+|+|||+.||+++|||||..|.
T Consensus 18 ~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~ 97 (157)
T 3q8u_A 18 IGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEAS 97 (157)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHcCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+||||||+++|.+|+.+|||+.++++|+.....|+|+
T Consensus 98 PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 98 PGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred CCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=3.1e-51 Score=293.97 Aligned_cols=132 Identities=57% Similarity=1.011 Sum_probs=130.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+||||++|+|+|+|||+.||+++|||||..|.
T Consensus 28 ~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~ 107 (161)
T 4fkx_A 28 VGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSL 107 (161)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccChHHHHHHHhcCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+||||||+++|.|||.+||++.++++|+.....|.|+
T Consensus 108 PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 159 (161)
T 4fkx_A 108 PGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159 (161)
T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCS
T ss_pred CCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccchhheec
Confidence 9999999999999999999999999999999999999999999999999985
No 3
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=293.10 Aligned_cols=132 Identities=54% Similarity=1.065 Sum_probs=130.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 41 ~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~GpTdp~~A~ 120 (172)
T 3l7u_A 41 VGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 120 (172)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSTTTCC
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+|||||++++|.|||.||||+.++++|+.....|.|+
T Consensus 121 PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 121 PGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp TTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred CCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 4
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=5.4e-51 Score=291.58 Aligned_cols=132 Identities=48% Similarity=0.968 Sum_probs=91.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+||||++|+|+|+|||+.||+++|||||..|.
T Consensus 24 ~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~ 103 (155)
T 3r9l_A 24 VGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESA 103 (155)
T ss_dssp HHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTHHHHHHHHHCCSCTTTCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+||||||+++|.||+.+||++.++++|+...+.|.|+
T Consensus 104 PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 104 PGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp TTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC------------
T ss_pred CCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 5
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=2.3e-50 Score=288.29 Aligned_cols=131 Identities=56% Similarity=0.929 Sum_probs=127.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+||||++|+|+|+|||+.||+++||+||..|.
T Consensus 25 ~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~ 104 (155)
T 3fkb_A 25 VGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASA 104 (155)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+|||||++++|.|||.+||++.++++|+... .|+|+
T Consensus 105 PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 105 PGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred CCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 9999999999999999999999999999999999999999999766 58875
No 6
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=4.3e-50 Score=285.90 Aligned_cols=129 Identities=42% Similarity=0.767 Sum_probs=125.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 22 ~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~ 101 (151)
T 3mpd_A 22 ISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAAS 101 (151)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCChhhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCC-CCcccccccchhhhhc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK-EGELCQWTPAQAQWLR 131 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~-~~~~~~~~~~~~~~~~ 131 (132)
|+|||++||.+..+|+||||||+++|.||+.+||+ +.++++| ..+.|.|
T Consensus 102 PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 102 VGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp TTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred CCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 99999999999999999999999999999999999 9999999 7788875
No 7
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=6.9e-50 Score=285.60 Aligned_cols=132 Identities=89% Similarity=1.496 Sum_probs=130.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 22 ~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~ 101 (153)
T 1s57_A 22 VGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAE 101 (153)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCccccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.||+.+|||+.++++|.....+|+|+
T Consensus 102 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 102 PGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred CcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 9999999999999999999999999999999999999999999999999985
No 8
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=4.8e-50 Score=287.18 Aligned_cols=132 Identities=49% Similarity=0.991 Sum_probs=130.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||++|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 26 vGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A~ 105 (157)
T 1xiq_A 26 VGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSN 105 (157)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccchHHHHHHcCCCCCCcCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+||||||+++|.||+++|||+.++.+|+....+|.|+
T Consensus 106 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 106 TGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred CCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 9
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=3e-50 Score=287.85 Aligned_cols=131 Identities=42% Similarity=0.842 Sum_probs=129.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+|||+++|+|+|+|||++||+++|||||.+|.
T Consensus 26 vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~naV~~~R~l~G~T~p~~A~ 105 (156)
T 3js9_A 26 IGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESA 105 (156)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccchHHHHHHhcCCCCccccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 131 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 131 (132)
|+|||+.||.+..+|++|||||+++|.|||++||++.++++|+.....|.|
T Consensus 106 PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 106 AGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp TTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred CCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 999999999999999999999999999999999999999999999999986
No 10
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=5e-50 Score=285.01 Aligned_cols=131 Identities=50% Similarity=0.999 Sum_probs=128.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 18 ~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~a~ 97 (148)
T 2vu5_A 18 IGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAA 97 (148)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCccccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 131 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~ 131 (132)
|+|||+.||.+..+|+|||||++++|.+|+.+||++.++.+|.....+|.|
T Consensus 98 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 98 PGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp TTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred CCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhccccccccccccC
Confidence 999999999999999999999999999999999999999999999999986
No 11
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=6.3e-50 Score=285.25 Aligned_cols=132 Identities=48% Similarity=1.015 Sum_probs=129.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 20 ~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~ 99 (151)
T 3bbb_A 20 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK 99 (151)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCHHHHHHHHhCCCCcccCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.+|+.+||++.++.+|++..+.|.|+
T Consensus 100 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 100 PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp TTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred CCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 12
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-50 Score=285.72 Aligned_cols=132 Identities=49% Similarity=0.822 Sum_probs=129.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++||+||..|.
T Consensus 19 ~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~a~ 98 (150)
T 1nb2_A 19 VGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAA 98 (150)
T ss_dssp HHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTHHHHHHHHHCCSSTTSSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCHHHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+||||||+++|.+|+.+||++.++.+|....++|.|+
T Consensus 99 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 99 PGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp TTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred CCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 13
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-49 Score=281.46 Aligned_cols=131 Identities=55% Similarity=1.040 Sum_probs=128.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++||+||..|.
T Consensus 18 ~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A~ 97 (149)
T 1u8w_A 18 IGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASE 97 (149)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCchHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.||+++|| +.++++|....++|.|+
T Consensus 98 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 98 PGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp TTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTGGGTSC
T ss_pred CCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhhccccccchhhhhc
Confidence 9999999999999999999999999999999999 56899999999999985
No 14
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-49 Score=286.47 Aligned_cols=132 Identities=50% Similarity=1.017 Sum_probs=123.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 30 iGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~t~p~~a~ 109 (161)
T 3b54_A 30 VSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSA 109 (161)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccChHHHHHHHhCCCCcccCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.||+++|||+.++.+|+....+|.|+
T Consensus 110 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 110 PGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp TTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred CCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 15
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=2.1e-49 Score=280.48 Aligned_cols=121 Identities=40% Similarity=0.715 Sum_probs=118.8
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+||||++|+|+|+|||+.||+++|||||..|.
T Consensus 24 ~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~tdp~~A~ 103 (145)
T 4hr2_A 24 IGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAE 103 (145)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCcHhHHhhccCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQ 121 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~ 121 (132)
|+|||++||.+..+|+||||||+++|.||++||||+.++++
T Consensus 104 pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei~~ 144 (145)
T 4hr2_A 104 KGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYS 144 (145)
T ss_dssp TTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred CCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhccc
Confidence 99999999999999999999999999999999999998875
No 16
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=2e-49 Score=282.38 Aligned_cols=131 Identities=57% Similarity=1.084 Sum_probs=128.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 19 ~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~aV~~~R~l~G~t~p~~A~ 98 (150)
T 1pku_A 19 IGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAA 98 (150)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccchHHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+|+|||||++++|.+|+.+|| +.++++|+...++|.|+
T Consensus 99 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 99 PGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp TTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTHHHHCC
T ss_pred CCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHhccccccchhhhhc
Confidence 9999999999999999999999999999999999 66899999999999985
No 17
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3.1e-49 Score=285.95 Aligned_cols=132 Identities=52% Similarity=1.053 Sum_probs=129.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++||+||..|.
T Consensus 38 ~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~ 117 (169)
T 1zs6_A 38 VGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAP 117 (169)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCchHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.||+++||++.++.+|+...++|.|+
T Consensus 118 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 169 (169)
T 1zs6_A 118 PGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169 (169)
T ss_dssp TTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCCCTTHHHHCC
T ss_pred CCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhcccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999985
No 18
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=8.1e-49 Score=277.08 Aligned_cols=123 Identities=43% Similarity=0.766 Sum_probs=121.3
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 19 ~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A~ 98 (142)
T 2hur_A 19 IGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANAL 98 (142)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSTTTSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccHHHHHHHHhCCCCcccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWT 123 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~ 123 (132)
|+|||+.||.+..+|+|||||++++|.+|+.+|||+.++++|.
T Consensus 99 pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~ 141 (142)
T 2hur_A 99 AGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRT 141 (142)
T ss_dssp TTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSCCCC
T ss_pred CCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhhccC
Confidence 9999999999999999999999999999999999999999996
No 19
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=7.3e-49 Score=282.81 Aligned_cols=132 Identities=45% Similarity=0.903 Sum_probs=129.8
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 25 ~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~ 104 (164)
T 2az3_A 25 IGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAA 104 (164)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccHHHHHHHHhCCCCccccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChh--HHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPE--NGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~--~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||+++ +|.||+.+||++.++.+|.....+|.|+
T Consensus 105 pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~~ 158 (164)
T 2az3_A 105 PGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158 (164)
T ss_dssp TTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHCC
T ss_pred CCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccccchHHHHHh
Confidence 999999999999999999999999 9999999999999999999999999885
No 20
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=4.6e-49 Score=283.08 Aligned_cols=131 Identities=51% Similarity=0.908 Sum_probs=128.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 24 ~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV~~~R~l~G~t~p~~a~ 103 (160)
T 2dxe_A 24 IGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAA 103 (160)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHHHHHHHHhCCCCCCcCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCC---ceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGR---NVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~---N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||++||.+..+ |+||||||+++|.+|+++||++.++.+| ....+|.|+
T Consensus 104 pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~ 157 (160)
T 2dxe_A 104 PGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY-PRAADWFYK 157 (160)
T ss_dssp TTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHC
T ss_pred CCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhc
Confidence 99999999999999 9999999999999999999999999999 899999885
No 21
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=4.6e-49 Score=287.75 Aligned_cols=132 Identities=55% Similarity=1.050 Sum_probs=129.8
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 49 iGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~G~T~p~~A~ 128 (182)
T 1w7w_A 49 ISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSA 128 (182)
T ss_dssp HHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccHHHHHHHHhCCCCCCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|+|||+.||.+..+|+|||||++++|.|||++||++.++.+|+....+|.|+
T Consensus 129 PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 180 (182)
T 1w7w_A 129 PGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYG 180 (182)
T ss_dssp TTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC
T ss_pred CCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccccccccccceec
Confidence 9999999999999999999999999999999999999999999999999885
No 22
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=8e-49 Score=277.61 Aligned_cols=124 Identities=44% Similarity=0.744 Sum_probs=122.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 19 ~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~A~ 98 (144)
T 1nhk_R 19 IGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAA 98 (144)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSGGGCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCHHHHHHHHhCCCCCCcCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCccccccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTP 124 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~ 124 (132)
|+|||+.||.+..+|+|||||++++|.+|+.+||++.++++|+.
T Consensus 99 pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 99 EGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp TTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred CCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhccccc
Confidence 99999999999999999999999999999999999999999984
No 23
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=6.4e-49 Score=288.39 Aligned_cols=132 Identities=34% Similarity=0.618 Sum_probs=129.5
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHH-----HhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYK-----DLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTD 75 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~-----~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~ 75 (132)
+|+||++|+++||+|+++||++||+++|++||. +++++|||+.|+++|+||||++|+|+|+|||+.||+++||||
T Consensus 43 ~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvleG~naV~~~R~l~GpTd 122 (190)
T 4dz6_A 43 IGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATE 122 (190)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEEEEETHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEEecCCHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhccccc----------CCceEEcCCChhHHHHHHhhcCCCCcccccccchhhhhcC
Q 045706 76 PLQAEPGTIRGDLAVQT----------GRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 132 (132)
Q Consensus 76 p~~a~p~slR~~~g~~~----------~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~~~~~~~~~~~ 132 (132)
|..|.|+|||++||.+. .+|+||||||+++|.|||.|||++.++++|++..+.|.|.
T Consensus 123 P~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~~~~~~~~y~ 189 (190)
T 4dz6_A 123 PKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDDECEHYY 189 (190)
T ss_dssp GGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCCCTTHHHHTC
T ss_pred hhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhccccccchhheec
Confidence 99999999999999999 9999999999999999999999999999999999999874
No 24
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=6.8e-48 Score=273.22 Aligned_cols=120 Identities=39% Similarity=0.820 Sum_probs=113.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecC-CHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQC-PKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~l-s~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a 79 (132)
+|+||++|+++||+|+++||++| |+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|
T Consensus 23 ~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~naV~~~R~l~G~t~p~~A 102 (146)
T 3evo_A 23 VAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLAS 102 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETTHHHHHHHHHCCSSTTTC
T ss_pred HHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHcCCCCcccC
Confidence 48999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCccc
Q 045706 80 EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120 (132)
Q Consensus 80 ~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~ 120 (132)
.|+|||++||.+..+|+||||||+++|.||+.+|||+.++.
T Consensus 103 ~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 143 (146)
T 3evo_A 103 APGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKME 143 (146)
T ss_dssp CTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC-----
T ss_pred CCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcC
Confidence 99999999999999999999999999999999999987763
No 25
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=3.5e-48 Score=273.84 Aligned_cols=120 Identities=38% Similarity=0.721 Sum_probs=117.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCC-
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQA- 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a- 79 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|
T Consensus 20 ~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~naV~~~R~l~G~t~p~~A~ 99 (142)
T 3ztp_A 20 LGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEAR 99 (142)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCHHHHHHHhcCCCCHHHhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCccc
Q 045706 80 --EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120 (132)
Q Consensus 80 --~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~ 120 (132)
.|+|||++||.+..+|+||||||+++|.+|+++|||+.+++
T Consensus 100 ~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 142 (142)
T 3ztp_A 100 KVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLEIV 142 (142)
T ss_dssp HHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGGCC
T ss_pred hcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999999999999988764
No 26
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=9e-48 Score=276.53 Aligned_cols=122 Identities=55% Similarity=1.083 Sum_probs=120.1
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+++++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 41 ~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~naV~~~R~l~G~T~p~~A~ 120 (162)
T 1ehw_A 41 VGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAA 120 (162)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCccccc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 122 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~~~~ 122 (132)
|+|||++||.+..+|+|||||++++|.||+++||++.++++|
T Consensus 121 PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 121 PGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp TTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred CCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhcccC
Confidence 999999999999999999999999999999999999999887
No 27
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.2e-47 Score=269.76 Aligned_cols=119 Identities=55% Similarity=0.977 Sum_probs=116.9
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||..|.
T Consensus 18 ~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~aV~~~R~l~G~t~p~~A~ 97 (137)
T 1wkj_A 18 VGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDAL 97 (137)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSSTTTCC
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcHHHHHHHHhCCCCCCcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
|+|||++||.+..+|+|||||++++|.+|+++|||+.++
T Consensus 98 pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (137)
T 1wkj_A 98 PGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136 (137)
T ss_dssp TTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGC
T ss_pred CCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhhc
Confidence 999999999999999999999999999999999998775
No 28
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=7.5e-47 Score=265.37 Aligned_cols=116 Identities=53% Similarity=0.909 Sum_probs=114.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCC-CC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPL-QA 79 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~-~a 79 (132)
+|+||++|+++||+|+++||++||+++|++||.+|+++|||+.|+++|+|||+++|+|+|+|||+.||+++|||||. .|
T Consensus 19 ~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~aV~~~R~l~G~t~p~~~A 98 (136)
T 1k44_A 19 IGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAA 98 (136)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTHHHHHHHHHCCSSTTTTS
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCHHHHHHHHhCCCCccccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCChhhhcccccCCceEEcCCChhHHHHHHhhcCCC
Q 045706 80 EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116 (132)
Q Consensus 80 ~p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~ 116 (132)
.|+|||++||.+..+|+|||||++++|.+|+.+|||+
T Consensus 99 ~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 99 APGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp CTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred CCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999986
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2e-43 Score=260.60 Aligned_cols=121 Identities=43% Similarity=0.737 Sum_probs=117.0
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHH-------------H--------------------HhcCCCChHHHHHH
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHY-------------K--------------------DLNSKPFFPKLIEY 47 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y-------------~--------------------~~~~~~~~~~l~~~ 47 (132)
+|+||++|+++||+|+++||+++|+++|++|| . +|.+++||+.|+++
T Consensus 32 ~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~gk~ff~~Lv~~ 111 (195)
T 1xqi_A 32 VDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKY 111 (195)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhccccchhcCCcchHHHHHH
Confidence 48999999999999999999999999999999 7 88999999999999
Q ss_pred hcCCceEEEEEecCchHHHHHHhhCCCCCCCCCCCChhhhcccccCC----------ceEEcCCChhHHHHHHhhcCCCC
Q 045706 48 ITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR----------NVVHGSDSPENGKREIGLWFKEG 117 (132)
Q Consensus 48 ~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~p~slR~~~g~~~~~----------N~vh~Sd~~~~a~~e~~~fF~~~ 117 (132)
|+||||++|+|+|+|||++||+++|||||..|.|+|||+.||.+..+ |+||||||+++|.||+.+||++.
T Consensus 112 mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgSDS~esA~rEi~~~F~~~ 191 (195)
T 1xqi_A 112 MTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREE 191 (195)
T ss_dssp HTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEECSSHHHHHHHHHHHCCGG
T ss_pred HcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcCCCHHHHHHHHHHhCChh
Confidence 99999999999999999999999999999999999999999999888 99999999999999999999998
Q ss_pred cccc
Q 045706 118 ELCQ 121 (132)
Q Consensus 118 ~~~~ 121 (132)
++++
T Consensus 192 e~~~ 195 (195)
T 1xqi_A 192 EVLE 195 (195)
T ss_dssp GSCC
T ss_pred hccC
Confidence 8753
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.96 E-value=1.7e-29 Score=200.48 Aligned_cols=95 Identities=18% Similarity=0.384 Sum_probs=90.4
Q ss_pred ChHHHHHHHHcCCeEEeeEeecCCHHHHHHHHHHhcCCCChHHHHHHhcCCceEEEEEecCchHHHHHHhhCCCCCCCCC
Q 045706 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE 80 (132)
Q Consensus 1 ~G~Ii~~i~~~Gf~I~~~km~~ls~e~a~~~y~~~~~~~~~~~l~~~~~sGpvv~l~l~g~nav~~~r~l~G~~~p~~a~ 80 (132)
+|+||++|+++||+|+++||++|++++|++||.+|+ +.|+++|+|||+++|+|+|+|||+.||+++|+++|
T Consensus 252 iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~av~~~R~l~g~t~p---- 322 (352)
T 3bh7_B 252 ARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFN---- 322 (352)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCHHHHHHHHhcCCCC----
Confidence 499999999999999999999999999999999997 77999999999999999999999999999999995
Q ss_pred CCChhhhcccccCCceEEcCCChhHHHHHHhhcCCCC
Q 045706 81 PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEG 117 (132)
Q Consensus 81 p~slR~~~g~~~~~N~vh~Sd~~~~a~~e~~~fF~~~ 117 (132)
.|+|||||++++|+||+++||+..
T Consensus 323 -------------gN~vHgSds~esA~~Ei~~fF~~~ 346 (352)
T 3bh7_B 323 -------------GTKMFVSESKETASGDVDSFYNFA 346 (352)
T ss_dssp -------------TSCEEECSCHHHHHHHHHHHHHHH
T ss_pred -------------CceEEecCCHHHHHHHHHHhcCcc
Confidence 299999999999999999999753
No 31
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=34.82 E-value=30 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.558 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCeEEeeEee
Q 045706 3 EIISRFEKKGFKLIGLKLF 21 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~km~ 21 (132)
.+|++|+..||+++.+.=+
T Consensus 54 ~VLnKLE~~G~rVvsmtGv 72 (83)
T 1jg5_A 54 IVLDKLECRGFRVLSMTGV 72 (83)
T ss_dssp HHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHhccCeEEEEEecC
Confidence 5899999999999987643
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.98 E-value=25 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHhc------CCCChHHHHHHhcCCce
Q 045706 22 QCPKDLAEEHYKDLN------SKPFFPKLIEYITSGPV 53 (132)
Q Consensus 22 ~ls~e~a~~~y~~~~------~~~~~~~l~~~~~sGpv 53 (132)
.||++++.++..... |+-.|.+.+..|++||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 578999999887543 24468999999999984
No 33
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.37 E-value=50 Score=18.94 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred HHHHHHHHcCCeEEeeE
Q 045706 3 EIISRFEKKGFKLIGLK 19 (132)
Q Consensus 3 ~Ii~~i~~~Gf~I~~~k 19 (132)
+++..|++.||.+++.+
T Consensus 9 elik~L~~~G~~~~r~~ 25 (70)
T 1whz_A 9 EVARKLRRLGFVERMAK 25 (70)
T ss_dssp HHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEeCCC
Confidence 68889999999987644
No 34
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=27.60 E-value=29 Score=23.26 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=21.9
Q ss_pred ceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 95 NVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 95 N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
=-||.++|.+-+..-+..+||+.++
T Consensus 12 a~v~~TED~eKV~~Al~nifp~~~i 36 (138)
T 3d7a_A 12 AYVYPTEDIRKVKKAMLNLIPGLQF 36 (138)
T ss_dssp EEECTTBCHHHHHHHHHHHSTTCEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCce
Confidence 3599999999999999999998554
No 35
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=26.32 E-value=63 Score=19.27 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEE----eeEeecCCHHH
Q 045706 2 GEIISRFEKKGFKLI----GLKLFQCPKDL 27 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~----~~km~~ls~e~ 27 (132)
-.+|++|++.|+... +.+.+.||++=
T Consensus 44 s~~l~~Le~~gli~r~~~~r~~~~~LT~~G 73 (99)
T 1tbx_A 44 YDAKKFLIQEGFVKERQERGEKRLYLTEKG 73 (99)
T ss_dssp HHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCEEEEecCCceEEEECHHH
Confidence 357899999999887 57788888763
No 36
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=25.44 E-value=1e+02 Score=21.02 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=22.5
Q ss_pred hHHHHHHHHcCCeEEeeEeecCCHHHHH
Q 045706 2 GEIISRFEKKGFKLIGLKLFQCPKDLAE 29 (132)
Q Consensus 2 G~Ii~~i~~~Gf~I~~~km~~ls~e~a~ 29 (132)
.++.+.|.++||.++..+....+++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 222 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEFCPTDAQIT 222 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCCHHHHH
T ss_pred HHHHHHHHHcCCEeeeeccCCCchHhhh
Confidence 3577888999999999998877776544
No 37
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=24.39 E-value=51 Score=17.59 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHh
Q 045706 23 CPKDLAEEHYKDL 35 (132)
Q Consensus 23 ls~e~a~~~y~~~ 35 (132)
||+++|+||-..+
T Consensus 3 LT~~EA~EfH~~~ 15 (41)
T 1nkz_B 3 LTAEQSEELHKYV 15 (41)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7999999996654
No 38
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=22.81 E-value=58 Score=21.98 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred ceEEcCCChhHHHHHHhhcCCC
Q 045706 95 NVVHGSDSPENGKREIGLWFKE 116 (132)
Q Consensus 95 N~vh~Sd~~~~a~~e~~~fF~~ 116 (132)
=-+|.++|.+-+..-+..|||+
T Consensus 13 a~v~~TED~eKV~~Al~nifp~ 34 (146)
T 2ogk_A 13 AVVHSTEDREKVGEAISTLFPF 34 (146)
T ss_dssp EEECTTSCHHHHHHHHGGGCSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCC
Confidence 3589999999999999999997
No 39
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein AF_135, structural genomics, PSI-II, dimer; 2.30A {Archaeoglobus fulgidus dsm 4304}
Probab=21.83 E-value=37 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred CceEEcCCChhHHHHHHhhcCCCCcc
Q 045706 94 RNVVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 94 ~N~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
+=-||.+++.+-+..-+..|||..++
T Consensus 13 ~a~v~~TED~eKV~~Al~nifp~~~i 38 (142)
T 3c9g_A 13 RTKIHPTESEDKVLKAIRNIFPDAEI 38 (142)
T ss_dssp EEECCTTBCHHHHHHHHHHHCTTCEE
T ss_pred EEEEeCCCCHHHHHHHHHHhCCCCce
Confidence 34589999999999999999998554
No 40
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, sulfolobus solfataricus P2, structural genomics, PSI-2; 2.40A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=20.62 E-value=50 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.2
Q ss_pred ceEEcCCChhHHHHHHhhcCCCCccc
Q 045706 95 NVVHGSDSPENGKREIGLWFKEGELC 120 (132)
Q Consensus 95 N~vh~Sd~~~~a~~e~~~fF~~~~~~ 120 (132)
=-||.+++.+-+.+-+..|||..++.
T Consensus 10 a~V~~TED~eKV~~Ai~Nifp~~~ie 35 (155)
T 2nwu_A 10 AEVRPSEDVNKVLSAISNFFDFEKMN 35 (155)
T ss_dssp EEECTTBCHHHHHHHHHTTCCCSEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCceE
Confidence 35899999999999999999976543
No 41
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=20.41 E-value=48 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.4
Q ss_pred eEEcCCChhHHHHHHhhcCCCCcc
Q 045706 96 VVHGSDSPENGKREIGLWFKEGEL 119 (132)
Q Consensus 96 ~vh~Sd~~~~a~~e~~~fF~~~~~ 119 (132)
-||.++|.+-+..-+..+||..++
T Consensus 9 ~V~~TED~eKV~~Al~nifp~~~i 32 (147)
T 2pzz_A 9 KVKPTEDKYKVKKAILNIFPKAKL 32 (147)
T ss_dssp EECTTBCHHHHHHHHHHHCTTCEE
T ss_pred EEeCCCCHHHHHHHHHHhCCCCce
Confidence 489999999999999999998554
No 42
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=20.30 E-value=68 Score=17.46 Aligned_cols=14 Identities=7% Similarity=-0.054 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHh
Q 045706 22 QCPKDLAEEHYKDL 35 (132)
Q Consensus 22 ~ls~e~a~~~y~~~ 35 (132)
-||+++|+||-..+
T Consensus 7 GLT~~EA~EfH~~~ 20 (45)
T 1lgh_B 7 GLTEEEAIAVHDQF 20 (45)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 48999999996654
Done!