RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045706
(132 letters)
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 215 bits (551), Expect = 6e-74
Identities = 68/114 (59%), Positives = 88/114 (77%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFE+KG K++ LK+ Q ++LAEEHY + KPFFP+L+E++TSGPVV M EG
Sbjct: 17 IGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEG 76
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
V + RKL+G+T+P A PGTIRGD A+ GRN+VHGSDS E+ +REI LWF
Sbjct: 77 ENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 212 bits (543), Expect = 1e-72
Identities = 71/119 (59%), Positives = 91/119 (76%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFEKKGFK++ LK+ Q ++ AEEHY + KPFFP L+E++TSGPVV M EG
Sbjct: 17 IGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGLVEFMTSGPVVAMVLEG 76
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
V+ R+L+G+T+P +A PGTIRGD AV GRN VHGSDSPE+ +REI L+F E E+
Sbjct: 77 ENAVSVVRELMGATNPAEAAPGTIRGDFAVSIGRNAVHGSDSPESAEREIALFFPEEEI 135
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 207 bits (530), Expect = 1e-70
Identities = 67/116 (57%), Positives = 87/116 (75%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFEKKG K++ LK+ Q ++LAE HY + KPFF +L+E++TSGPVV M EG
Sbjct: 18 IGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116
+A R+L+G+T+P +A PGTIRGD A+ G NVVHGSDSPE+ REI L+F E
Sbjct: 78 ENAIAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 205 bits (524), Expect = 1e-69
Identities = 80/130 (61%), Positives = 99/130 (76%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII RFEKKG+KL+ LK+ Q ++AEEHYK+ KPFFP L++YI+SGPVVCM WEG
Sbjct: 19 VGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV RKL+G+T+PL++ PGTIRGD V GRNV+HGSDS E+ KREI LWFK EL
Sbjct: 79 KNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELV 138
Query: 121 QWTPAQAQWL 130
WT ++W+
Sbjct: 139 SWTSHSSKWI 148
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 202 bits (517), Expect = 1e-68
Identities = 66/119 (55%), Positives = 86/119 (72%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFE+KGFK++ +K+ Q ++ AEE Y + KPFF L+E++TSGPVV M EG
Sbjct: 17 IGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDLVEFMTSGPVVAMVLEG 76
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
V + R L+G TDP +A PGTIRGD + GRN VHGSDSPE+ +REI L+F E E+
Sbjct: 77 EDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPESEI 135
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 188 bits (480), Expect = 5e-63
Identities = 67/116 (57%), Positives = 87/116 (75%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFEKKG K++ LK+ Q ++LAE HY + KPFF +L+E+ITSGPVV M EG
Sbjct: 19 IGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116
++ RKL+G+T+P A PGTIRGD A+ G NVVHGSDSPE+ +REI L+F +
Sbjct: 79 ENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 181 bits (460), Expect = 1e-58
Identities = 73/130 (56%), Positives = 95/130 (73%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+ EIISRFE+KGFKL+ +K+ K+ A++HY DL +PFF L ++++SGPVV M WEG
Sbjct: 105 ISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEG 164
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GV+ RKLIG+TDP ++EPGTIRGDLAV GRN++HGSD PE K EI LWFK EL
Sbjct: 165 EGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELV 224
Query: 121 QWTPAQAQWL 130
+T +W+
Sbjct: 225 SYTSNAEKWI 234
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 144 bits (364), Expect = 2e-45
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEII R E GF+++ +K ++ AEE Y + +PFFP L+++++SGPVV M E
Sbjct: 17 LGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEK 76
Query: 61 AGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
V R+++G T+P A PG++R D RN VHGSDS E+ REI +F
Sbjct: 77 DNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 139 bits (353), Expect = 7e-44
Identities = 53/116 (45%), Positives = 84/116 (72%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+II RFE KGF+++ +K+ + +++AEE+Y++ K F+ +LI ++TSG +V M EG
Sbjct: 19 IGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116
+++ RK+IG T+P +AEPGTIRGD + T N++H SDS E+ +REI L+F E
Sbjct: 79 ENAISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 118 bits (298), Expect = 6e-35
Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 43/162 (26%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHY------------KDLNS----------- 37
VGEIISRFEK G K++ +K+ + + E Y K L +
Sbjct: 20 VGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRAR 79
Query: 38 ----------KPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGD 87
K L++Y+TSGP+V M +G V RKL+G T P +A PGTIRGD
Sbjct: 80 LGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGD 139
Query: 88 -------LAVQTGR---NVVHGSDSPENGKREIGLWFKEGEL 119
LA + GR N+VH SDSPE +REI WF+E E+
Sbjct: 140 YSIDSPDLAAEEGRVVYNLVHASDSPEEAEREIKFWFREEEI 181
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 106 bits (265), Expect = 1e-30
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VG I+ R EK+GFK++GLK + + A++ YK +++PF+ L Y++SGP+V A E
Sbjct: 18 VGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALER 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
V R++IG+TDP +A GTIR A N VHGSDS N EI +FK EL
Sbjct: 78 DNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 104 bits (260), Expect = 9e-30
Identities = 48/118 (40%), Positives = 70/118 (59%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G +I + E+ GF+++ +K + K+ A E Y +PF+ +L+E+++SGP V M E
Sbjct: 18 IGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEK 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 118
VA R LIG+TDP +A GT+R A G N+VHGSDS EN E G +F E
Sbjct: 78 ENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEE 135
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 96.9 bits (241), Expect = 6e-27
Identities = 43/114 (37%), Positives = 60/114 (52%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G I+ GF+++ +KL Q AE Y +PF+ +L+E+++ GP+V E
Sbjct: 20 IGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEK 79
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
V R LIG+T+P A GTIR A G N VHGSDS EN + E F
Sbjct: 80 ENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHF 133
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 97.7 bits (243), Expect = 8e-27
Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 15/134 (11%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHY--KDL---NSKPFFPKLIEYITSGPVVC 55
+G ++SRFE+ G K++ K+ + +AE+HY D+ + + + LI++I+S PV
Sbjct: 22 IGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFV 81
Query: 56 MAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR----------NVVHGSDSPEN 105
EG V RK GST+P A PGTIRGD + + NV+H S + ++
Sbjct: 82 FVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDD 141
Query: 106 GKREIGLWFKEGEL 119
REI +WFK+ E+
Sbjct: 142 ALREIPIWFKDNEI 155
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 92.6 bits (230), Expect = 1e-24
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 12 GFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLI 71
GF ++ Q +D A Y + +S+ FFP L++Y+TSGPV+ M E V+ R LI
Sbjct: 57 GFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLI 116
Query: 72 GSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 116
G TD +A+ P +IR + + +N VHGSDSPE+ +REI +F +
Sbjct: 117 GPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGD 164
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 87.9 bits (218), Expect = 2e-23
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+II E GF + K+ + + A++ Y + SKPF+ +L++++TSGP+V M G
Sbjct: 15 IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVG 74
Query: 61 AGVVASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
++ RKL+G T+ A P +IR RN HGSDS + RE+ +F
Sbjct: 75 DDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 83.5 bits (207), Expect = 1e-21
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEE---HYKDLNSKPFFPKLIEYITSGPVVCMA 57
+GEI+ + +GF++ L++F + AEE YK + P P +++ +TSGP + +
Sbjct: 17 LGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVV--PELPAMVDELTSGPCIALE 74
Query: 58 WEGAGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
G V + R+ G DP A+ P T+R +N VH +D PE+G E+ +F
Sbjct: 75 IAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 80.1 bits (198), Expect = 2e-20
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 12 GFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLI 71
GF ++ K + + AE Y + K F+ +L+ ++TSGP + + + R L+
Sbjct: 29 GFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENAIKTWRALM 88
Query: 72 GSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
G T +A P +IRG + RN HGSDSP + +REI L+F
Sbjct: 89 GPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFF 134
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 78.4 bits (194), Expect = 8e-20
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 3 EIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 62
EI+ + ++ GF+++ K ++ A E YK+ + +F L+E++TSGP + +
Sbjct: 18 EILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKEN 77
Query: 63 VVASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
V R+L+G TDP +A +P ++R A N VHGS S E ++EI +F
Sbjct: 78 AVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 76.3 bits (188), Expect = 6e-19
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 3 EIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 62
EI + GF ++ + Q + + Y + K FFP L+ Y++SGP+V M
Sbjct: 17 EIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHN 76
Query: 63 VVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK 115
++ ++L+G T+ L+A+ P ++R RN VHGSDS + +REI F
Sbjct: 77 AISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132
>gnl|CDD|204569 pfam10982, DUF2789, Protein of unknown function (DUF2789). This
bacterial family of proteins has no known function.
Length = 74
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 122 WTPAQAQWLRE 132
WTPAQA +L+E
Sbjct: 45 WTPAQAAFLKE 55
>gnl|CDD|204075 pfam08820, DUF1803, Domain of unknown function (DUF1803). This
small domain is found in one or two copies in proteins
from bacteria. The function of this domain is unknown.
Length = 94
Score = 26.6 bits (59), Expect = 2.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 27 LAEEHYKDLNSKPFFPKLIEY 47
+ YK L ++P F L+EY
Sbjct: 1 IKNYFYKKLTNQPLFYDLLEY 21
>gnl|CDD|224946 COG2035, COG2035, Predicted membrane protein [Function unknown].
Length = 276
Score = 27.3 bits (61), Expect = 2.6
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 35 LNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAV 90
L S P K I Y + V + G + LI + +Q T + +
Sbjct: 96 LGSVPSLLKEINYKSVKTVNRLFALILGFIILG--LILYLNNIQTASITTGYLILL 149
>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional.
Length = 245
Score = 27.0 bits (60), Expect = 2.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 53 VVCMAWEGAGVVASARKLIGSTDPLQAEPG--TIRGDLA 89
V +A GA VVA+AR + D L E G +R D+
Sbjct: 26 AVALAQRGARVVAAARN-AAALDRLAGETGCEPLRLDVG 63
>gnl|CDD|114164 pfam05423, Mycobact_memb, Mycobacterium membrane protein. This
family contains several membrane proteins from
Mycobacterium species.
Length = 140
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 36 NSKPFFPKLIEYITSGPVVCMA 57
+ KPF PK + Y GP +A
Sbjct: 44 DIKPFNPKHVTYEVFGPPGTVA 65
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 26.9 bits (60), Expect = 3.6
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 75 DPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREI---GLW 113
D A P D+ ++ GR G + + I GL
Sbjct: 11 DGTGAPP--FTADVGIRDGRIAAIGPILSTSAREVIDAAGLV 50
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 26.6 bits (59), Expect = 4.2
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 57 AWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHG----------SDSPENG 106
A + AG A+ + + +QA PG + +G+NV G D N
Sbjct: 392 APKSAGGSAAGKSAVAKATGVQAAPG---WARRMASGQNVFAGASTAAAAVRGGDGAGND 448
Query: 107 K 107
Sbjct: 449 A 449
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication,
recombination, and repair].
Length = 440
Score = 26.4 bits (59), Expect = 5.4
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITS 50
+G + FE+ KL LF E K L PFFPK I ITS
Sbjct: 103 LGALYLAFEQLKAKLAAEGLF------DPERKKPL---PFFPKKIGVITS 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.433
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,890,361
Number of extensions: 596693
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 32
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)