RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045706
(132 letters)
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 250 bits (640), Expect = 2e-87
Identities = 118/132 (89%), Positives = 124/132 (93%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEIISRFEKKGFKLIGLK+FQCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG
Sbjct: 22 VGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEG 81
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREIGLWFKEGELC
Sbjct: 82 VGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELC 141
Query: 121 QWTPAQAQWLRE 132
+W A A WLRE
Sbjct: 142 KWDSALATWLRE 153
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 248 bits (636), Expect = 9e-87
Identities = 68/132 (51%), Positives = 89/132 (67%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GE+ISR E+KG KL+G KL Q P +LAE HY + KPF+ LI +ITS PV M EG
Sbjct: 18 IGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
V +R +IGST+P +A PG+IRGDL + GRN++HGSDS E+ +REI LWF E E+
Sbjct: 78 EDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEIT 137
Query: 121 QWTPAQAQWLRE 132
+ + WL E
Sbjct: 138 SYASPRDAWLYE 149
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 248 bits (635), Expect = 1e-86
Identities = 66/132 (50%), Positives = 92/132 (69%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
V +I+SRFEKKG+KL+ +KL + L E+HY + KPFFPK++ ++ SGP++ WEG
Sbjct: 30 VSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEG 89
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV R ++G+T+PL + PGTIRGD + GRNV HGSDS ++ +REI LWFK+ EL
Sbjct: 90 KDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELV 149
Query: 121 QWTPAQAQWLRE 132
W QA+W+ E
Sbjct: 150 DWESNQAKWIYE 161
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 248 bits (635), Expect = 2e-86
Identities = 69/132 (52%), Positives = 95/132 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEI+ RFE+KGFKL+ LKL Q ++L EHY +L +PF+ +L++Y+ SGPVV M W+G
Sbjct: 38 VGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQG 97
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV ++R LIG+T+P A PGTIRGD ++ G+N++HGSDS E+ +REI LWF+ EL
Sbjct: 98 LDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELL 157
Query: 121 QWTPAQAQWLRE 132
W + WL E
Sbjct: 158 CWEDSAGHWLYE 169
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 247 bits (632), Expect = 3e-86
Identities = 65/130 (50%), Positives = 80/130 (61%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGE++ RFE KG KL G KL KD A HY +L PFF L+ TSGPV M WEG
Sbjct: 19 VGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
A+AR+++G+T+P A PGTIRGD V GRN +HGSDS + +EIG +F GE
Sbjct: 79 LNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAA 138
Query: 121 QWTPAQAQWL 130
TPA A +
Sbjct: 139 SGTPAAAADI 148
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 246 bits (631), Expect = 3e-86
Identities = 66/130 (50%), Positives = 95/130 (73%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEI++RFEKKGF+L+G KL Q ++A +HY + KPFF +L+++ITSGPV M W+G
Sbjct: 18 IGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVV +AR ++G T P +A PGTIRGD V +N++HGSDS E+ +REIG++FKE EL
Sbjct: 78 EGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELV 137
Query: 121 QWTPAQAQWL 130
++ +W+
Sbjct: 138 DYSKLMNEWI 147
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 247 bits (633), Expect = 3e-86
Identities = 71/132 (53%), Positives = 94/132 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII RFE+KGF+L+GLK Q +DL +EHY DL +PFF L++Y+ SGPVV M WEG
Sbjct: 41 VGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEG 100
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV + R ++G T+P ++PGTIRGD +Q GRN++HGSDS E+ ++EIGLWF EL
Sbjct: 101 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELV 160
Query: 121 QWTPAQAQWLRE 132
+T W+ E
Sbjct: 161 DYTSCAQNWIYE 172
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 247 bits (634), Expect = 4e-86
Identities = 72/132 (54%), Positives = 94/132 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+ EIISRFE+KGFKL+G+K+ K A++HY DL +PFF L ++++SGPV+ M WEG
Sbjct: 49 ISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEG 108
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GV+ RKLIG+TDP ++ PGTIRGDLAV GRN++HGSD PE K EI LWFK EL
Sbjct: 109 EGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELV 168
Query: 121 QWTPAQAQWLRE 132
+T +W+
Sbjct: 169 SFTSNSEKWIYG 180
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 246 bits (631), Expect = 5e-86
Identities = 64/132 (48%), Positives = 92/132 (69%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEIISRFE++GFKL+ +K F K+L EEHYK+ ++PFF L ++++SGPV M WEG
Sbjct: 24 VGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEG 83
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
A VV+ +R ++G T P ++ PGTIRGD + GRN++HGS + ++ REI LWFK E+
Sbjct: 84 ANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVA 143
Query: 121 QWTPAQAQWLRE 132
W+ + + E
Sbjct: 144 SWSCSLESHIYE 155
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 246 bits (630), Expect = 7e-86
Identities = 55/130 (42%), Positives = 73/130 (56%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEI+ RFE KG KLI K D+ +HY + KPFF L ++I+ GPV CM WEG
Sbjct: 26 IGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEG 85
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
+ R L+G T P+++ GTIRGD V N+VH S S E+ RE LWF +L
Sbjct: 86 PEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLV 145
Query: 121 QWTPAQAQWL 130
W + W+
Sbjct: 146 TWERSVGGWI 155
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 246 bits (630), Expect = 7e-86
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII RFE KG+KL+GLKL Q ++ A++HY DL SKPF+ L+ Y +SGP+V M WEG
Sbjct: 28 VGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEG 87
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVV R L+G+T+P + PGTIRGD AV GRNV HGSDS E+ KREI WFK EL
Sbjct: 88 LGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELV 147
Query: 121 QWTPAQAQWLRE 132
WT + + E
Sbjct: 148 SWTSHSVKQIYE 159
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 245 bits (629), Expect = 1e-85
Identities = 64/132 (48%), Positives = 92/132 (69%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII RFE+KGF+L+ +K + ++ ++HY DL +PFFP L++Y+ SGPVV M WEG
Sbjct: 20 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 79
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV + R ++G T+P ++PGTIRGD +Q GRN++HGSDS ++ ++EI LWFK EL
Sbjct: 80 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELV 139
Query: 121 QWTPAQAQWLRE 132
+ W+ E
Sbjct: 140 DYKSCAHDWVYE 151
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 245 bits (629), Expect = 1e-85
Identities = 65/130 (50%), Positives = 89/130 (68%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VG II RFEKKG+KLI +K+ +++ +EHYK+L+ +PFF L+ YI+ GPVV M WEG
Sbjct: 26 VGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEG 85
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
+V RKLIG T+PL + GTIRGD ++ +NV+HGSDS + +EI +WFK EL
Sbjct: 86 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELT 145
Query: 121 QWTPAQAQWL 130
QW +W+
Sbjct: 146 QWKHHMKEWI 155
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 243 bits (623), Expect = 7e-85
Identities = 76/132 (57%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+IISRFEKKGF L G+K + A++HY DL+ KPFFP L+EYI SGPVV M WEG
Sbjct: 19 IGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VVA+ R++IG+T P +A PGTIR D AV+ GRNV+HGSDS +NGK+EI LWF E L
Sbjct: 79 KDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPE-GLA 137
Query: 121 QWTPAQAQWLRE 132
+W W+ E
Sbjct: 138 EWRSNLHPWIYE 149
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 243 bits (622), Expect = 1e-84
Identities = 74/132 (56%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII+R+EKKGF L+GLK KDLAE HY + +PFF L+ +ITSGPVV M +EG
Sbjct: 25 VGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEG 84
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E+ REI LWFK EL
Sbjct: 85 KGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELL 144
Query: 121 QWTPAQAQWLRE 132
L E
Sbjct: 145 TEVKPNP-NLYE 155
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 243 bits (622), Expect = 1e-84
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+I++R E KG K++G K + ++LA EHY + KPFF L+ +ITSGPV M WEG
Sbjct: 25 IGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEG 84
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPEN--GKREIGLWFKEGE 118
A R+L+G+TD A PGTIRGD G N++HGSD + +REI L+F + E
Sbjct: 85 ADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDE 144
Query: 119 LCQWTPAQAQWLRE 132
L W + W+ E
Sbjct: 145 LVDWDRDASAWVYE 158
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 242 bits (619), Expect = 3e-84
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+ II RFE+KG L K +++ E HY L+S PFF +++E + SG V+ M W G
Sbjct: 22 ISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVG 81
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
V+ RKLIG T+P A GTIRGD V TG+N++HGSD EN ++EI LW + ++
Sbjct: 82 KDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGD-DVQ 140
Query: 121 QWTPAQAQWL 130
+ +W+
Sbjct: 141 PVSFFDKEWI 150
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 240 bits (616), Expect = 8e-84
Identities = 72/132 (54%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GE+I RFEKKGF L GLKL + AE+HY+DL+SK FF L++YI SGPVV M WEG
Sbjct: 18 IGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV + RK+IG+T+P +EPGTIRGD A+ GRNV+HGSDS E+ ++EI LWF +
Sbjct: 78 KNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPD-GPV 136
Query: 121 QWTPAQAQWLRE 132
W + W+ E
Sbjct: 137 NWQSSVHPWVYE 148
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 240 bits (614), Expect = 2e-83
Identities = 67/122 (54%), Positives = 88/122 (72%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VG++I RFE++GF L+G+K+ Q P+ + EHY+DL KPF+P LI Y++SGPVV M WEG
Sbjct: 41 VGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEG 100
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV ++R +IG TD +A PGTIRGD +V RNV+H SDS E +REI LWF+ EL
Sbjct: 101 YNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELV 160
Query: 121 QW 122
W
Sbjct: 161 SW 162
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 239 bits (612), Expect = 2e-83
Identities = 54/126 (42%), Positives = 78/126 (61%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+IISRFE+KG K + ++L + AE Y ++PFF L++++ SGPVV M EG
Sbjct: 19 IGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
V + R ++G+T+P QA GTIR D A +N VHGSDS EN K EI +F+E E+
Sbjct: 79 ENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH 138
Query: 121 QWTPAQ 126
+ +
Sbjct: 139 SYPYQK 144
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 237 bits (606), Expect = 2e-82
Identities = 53/123 (43%), Positives = 72/123 (58%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G I +RFE GFK++G K+ + A Y + + KPFF L+E++TSGP+V EG
Sbjct: 19 IGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
V R L+G+T+P A GT+R D A N HGSDS E+ REI +F EGE+C
Sbjct: 79 ENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVC 138
Query: 121 QWT 123
T
Sbjct: 139 PRT 141
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 234 bits (598), Expect = 5e-81
Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFEKKG K++G+K+ ++LAE+HY++ KPFF LI+YIT PVV M EG
Sbjct: 24 IGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEG 83
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR---NVVHGSDSPENGKREIGLWFKEG 117
V RK+ G+TDP A PGTIRGD ++ NV+H SDS E+ +REI L+FK
Sbjct: 84 RYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPE 143
Query: 118 ELCQWTPAQAQWLRE 132
EL ++ A A W +
Sbjct: 144 ELFEYPRA-ADWFYK 157
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 232 bits (594), Expect = 2e-80
Identities = 47/123 (38%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLF-QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWE 59
V EI+ R EKK FK++ +K + + P++L E+HYK+ + + +F +++ SGP++ + +E
Sbjct: 23 VAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYE 82
Query: 60 GAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
G ++ R+L G+T+PL + PGTIRGDLA N++H SDS ++ EI +WF E ++
Sbjct: 83 GTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKM 142
Query: 120 CQW 122
Sbjct: 143 ETD 145
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 230 bits (590), Expect = 4e-80
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEI++RFE+KGF++ LKL Q ++LAE HY + KPFFP L+ +ITSGPVV M EG
Sbjct: 18 VGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
GVVA RK++G+T P A PGTIRGD A NV+HGS + E+ +REI L+F+ EL
Sbjct: 78 PGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 229 bits (587), Expect = 2e-79
Identities = 48/120 (40%), Positives = 69/120 (57%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+I SRFE G K++ ++ + AE+ Y +PFF L+E++ SGPV+ EG
Sbjct: 24 IGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEG 83
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
+ R L+G+TDP +AE GTIR D A N VHGSD+PE + EI +F E +
Sbjct: 84 EDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVY 143
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 231 bits (590), Expect = 2e-79
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 15/145 (10%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHY-----KDLNSKPFFPKLIEYITSGPVVC 55
+G+++SRFE+ G K++ K+ + LA++HY +S+ + LI++I++ PV
Sbjct: 43 IGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFT 102
Query: 56 MAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR----------NVVHGSDSPEN 105
EG + RKL G+T+P A PGTIRGD + + + NV+H S + +
Sbjct: 103 FVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEAD 162
Query: 106 GKREIGLWFKEGELCQWTPAQAQWL 130
REI +WFK+ E+ +
Sbjct: 163 AMREIPIWFKDNEILNYKRDDECEH 187
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 221 bits (567), Expect = 2e-76
Identities = 62/118 (52%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISR E+KG + L+L +LA +HY + KPFF L+E+ITSGPVV EG
Sbjct: 19 IGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEG 78
Query: 61 AGVVASARKLIGSTDPLQ-AEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEG 117
+A+ R+L G TDP+Q A PGTIRGD A++T N+VHGSDS E+ +REI LWF
Sbjct: 79 TRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPGA 136
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 221 bits (566), Expect = 3e-76
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+I+ RF ++GF++ LK+F+ + A E Y +PFF +L+E+++SGPVV EG
Sbjct: 20 LGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEG 79
Query: 61 AGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEG 117
+ R++IG TD +A P +IR G+N +H SDSPE+ + EI F
Sbjct: 80 EDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGL 139
Query: 118 EL 119
E+
Sbjct: 140 EI 141
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 195 bits (496), Expect = 5e-65
Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNS----------------------- 37
V EIISRF+K G K++ LK+ + + E Y
Sbjct: 32 VDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAK 91
Query: 38 ----------KPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGD 87
+ L++Y+TSGP V M +G V RKL+G T P A PGTIRGD
Sbjct: 92 IGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGD 151
Query: 88 LAVQT----------GRNVVHGSDSPENGKREIGLWFKEGELCQ 121
++ + N+VH SDSP +REI WF+E E+ +
Sbjct: 152 YSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 2e-05
Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 38/129 (29%)
Query: 4 IISRFEKKGFKLIGLKLFQCP-------KDLAEEHYKDLNSKPFFPKLIEYITSGPVVCM 56
I K + Q P DL S ++++ I PV
Sbjct: 439 INKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRVL------SGSISERIVDCIIRLPVK-- 489
Query: 57 AWEGAGVVASARKLI--GSTDPLQAEPGTIRGDLAVQTGRN-------VVHGSDSPENGK 107
WE A ++ G PG G L V T RN V+ N
Sbjct: 490 -WETT-TQFKATHILDFG--------PGGASG-LGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 108 REIGLWFKE 116
+ G FK+
Sbjct: 539 DDYG--FKQ 545
>2kp6_A Uncharacterized protein; unknown function, structural genomics,
PSI-2, protein struct initiative; NMR {Chromobacterium
violaceum}
Length = 82
Score = 25.4 bits (56), Expect = 3.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 122 WTPAQAQWLRE 132
WTPAQA +LR+
Sbjct: 48 WTPAQAAFLRQ 58
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 26.3 bits (58), Expect = 4.1
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 84 IRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 118
I + +HG S K
Sbjct: 206 ISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDS 240
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine;
1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Length = 310
Score = 25.7 bits (57), Expect = 5.5
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 1 VGEIISRF-EKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWE 59
+ ++F G I + + ++ + + K G V +A +
Sbjct: 120 TDQGAAQFAAAMGVPEIPGEKLVTER--NKKRLEKEKHEKGAQKTDCQKNLGTVGAVALD 177
Query: 60 GAGVVASA 67
G VA A
Sbjct: 178 CKGNVAYA 185
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH;
3.20A {Rattus norvegicus} SCOP: f.56.1.1
Length = 154
Score = 25.4 bits (55), Expect = 6.1
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 31 HYKDL-NSKPFFPKLIEYITSGPVVCMAWEGAGVVASAR 68
H DL N PF + Y SGP + A + AR
Sbjct: 75 HLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGAR 113
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 25.3 bits (55), Expect = 8.6
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 84 IRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 118
IR G+ +H + K +EGE
Sbjct: 325 IRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEGE 359
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.433
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,142,047
Number of extensions: 118701
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 40
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.8 bits)