RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045706
(132 letters)
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 168 bits (426), Expect = 2e-55
Identities = 118/132 (89%), Positives = 124/132 (93%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEIISRFEKKGFKLIGLK+FQCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG
Sbjct: 22 VGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEG 81
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHGSDSPENGKREIGLWFKEGELC
Sbjct: 82 VGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELC 141
Query: 121 QWTPAQAQWLRE 132
+W A A WLRE
Sbjct: 142 KWDSALATWLRE 153
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 163 bits (413), Expect = 2e-53
Identities = 63/130 (48%), Positives = 91/130 (70%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII RFE+KGF+L+ +K + ++ ++HY DL +PFFP L++Y+ SGPVV M WEG
Sbjct: 20 VGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEG 79
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV + R ++G T+P ++PGTIRGD +Q GRN++HGSDS ++ ++EI LWFK EL
Sbjct: 80 LNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELV 139
Query: 121 QWTPAQAQWL 130
+ W+
Sbjct: 140 DYKSCAHDWV 149
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 158 bits (401), Expect = 1e-51
Identities = 69/132 (52%), Positives = 95/132 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEI+ RFE+KGFKL+ LKL Q ++L EHY +L +PF+ +L++Y+ SGPVV M W+G
Sbjct: 21 VGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQG 80
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV ++R LIG+T+P A PGTIRGD ++ G+N++HGSDS E+ +REI LWF+ EL
Sbjct: 81 LDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELL 140
Query: 121 QWTPAQAQWLRE 132
W + WL E
Sbjct: 141 CWEDSAGHWLYE 152
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 155 bits (394), Expect = 1e-50
Identities = 65/130 (50%), Positives = 89/130 (68%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VG II RFEKKG+KLI +K+ +++ +EHYK+L+ +PFF L+ YI+ GPVV M WEG
Sbjct: 18 VGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
+V RKLIG T+PL + GTIRGD ++ +NV+HGSDS + +EI +WFK EL
Sbjct: 78 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELT 137
Query: 121 QWTPAQAQWL 130
QW +W+
Sbjct: 138 QWKHHMKEWI 147
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 151 bits (382), Expect = 7e-49
Identities = 72/130 (55%), Positives = 94/130 (72%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+ EIISRFE+KGFKL+G+K+ K A++HY DL +PFF L ++++SGPV+ M WEG
Sbjct: 20 ISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEG 79
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GV+ RKLIG+TDP ++ PGTIRGDLAV GRN++HGSD PE K EI LWFK EL
Sbjct: 80 EGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELV 139
Query: 121 QWTPAQAQWL 130
+T +W+
Sbjct: 140 SFTSNSEKWI 149
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 148 bits (375), Expect = 8e-48
Identities = 67/122 (54%), Positives = 88/122 (72%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VG++I RFE++GF L+G+K+ Q P+ + EHY+DL KPF+P LI Y++SGPVV M WEG
Sbjct: 22 VGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEG 81
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV ++R +IG TD +A PGTIRGD +V RNV+H SDS E +REI LWF+ EL
Sbjct: 82 YNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELV 141
Query: 121 QW 122
W
Sbjct: 142 SW 143
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 147 bits (373), Expect = 4e-47
Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDL------------------------- 35
V EIISRF+K G K++ LK+ + + E Y
Sbjct: 19 VDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAK 78
Query: 36 --------NSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGD 87
+ L++Y+TSGP V M +G V RKL+G T P A PGTIRGD
Sbjct: 79 IGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGD 138
Query: 88 LAV----------QTGRNVVHGSDSPENGKREIGLWFKEGELCQ 121
++ + N+VH SDSP +REI WF+E E+ +
Sbjct: 139 YSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE 182
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 145 bits (368), Expect = 9e-47
Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GE+I RFEKKGF L GLKL + AE+HY+DL+SK FF L++YI SGPVV M WEG
Sbjct: 18 IGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
VV + RK+IG+T+P +EPGTIRGD A+ GRNV+HGSDS E+ ++EI LWF +G +
Sbjct: 78 KNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVN 137
Query: 121 QWTPAQAQWLRE 132
W + W+ E
Sbjct: 138 -WQSSVHPWVYE 148
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 145 bits (367), Expect = 9e-47
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEI++RFE+KGF++ LKL Q ++LAE HY + KPFFP L+ +ITSGPVV M EG
Sbjct: 18 VGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 119
GVVA RK++G+T P A PGTIRGD A NV+HGS + E+ +REI L+F+ EL
Sbjct: 78 PGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 144 bits (364), Expect = 3e-46
Identities = 54/122 (44%), Positives = 77/122 (63%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+IISRFE+KG K + ++L + AE Y ++PFF L++++ SGPVV M EG
Sbjct: 19 IGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
V + R ++G+T+P QA GTIR D A +N VHGSDS EN K EI +F+E E+
Sbjct: 79 ENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH 138
Query: 121 QW 122
+
Sbjct: 139 SY 140
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 143 bits (361), Expect = 1e-45
Identities = 74/132 (56%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGEII+R+EKKGF L+GLK KDLAE HY + +PFF L+ +ITSGPVV M +EG
Sbjct: 20 VGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEG 79
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E+ REI LWFK EL
Sbjct: 80 KGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVESANREIALWFKPEELL 139
Query: 121 QWTPAQAQWLRE 132
L E
Sbjct: 140 TEVKPNP-NLYE 150
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 142 bits (360), Expect = 2e-45
Identities = 65/130 (50%), Positives = 80/130 (61%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
VGE++ RFE KG KL G KL KD A HY +L PFF L+ TSGPV M WEG
Sbjct: 18 VGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEG 77
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 120
A+AR+++G+T+P A PGTIRGD V GRN +HGSDS + +EIG +F GE
Sbjct: 78 LNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAA 137
Query: 121 QWTPAQAQWL 130
TPA A +
Sbjct: 138 SGTPAAAADI 147
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 142 bits (358), Expect = 4e-45
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+G+I++R E KG K++G K + ++LA EHY + KPFF L+ +ITSGPV M WEG
Sbjct: 19 IGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENG--KREIGLWFKEGE 118
A R+L+G+TD A PGTIRGD G N++HGSD + G +REI L+F + E
Sbjct: 79 ADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDE 138
Query: 119 LCQWTPAQAQWLRE 132
L W + W+ E
Sbjct: 139 LVDWDRDASAWVYE 152
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 134 bits (339), Expect = 2e-42
Identities = 62/115 (53%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISR E+KG + L+L +LA +HY + KPFF L+E+ITSGPVV EG
Sbjct: 18 IGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEG 77
Query: 61 AGVVASARKLIGSTDPLQA-EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
+A+ R+L G TDP+QA PGTIRGD A++T N+VHGSDS E+ +REI LWF
Sbjct: 78 TRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWF 132
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 131 bits (330), Expect = 6e-41
Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 1 VGEIISRFEKKGFKLIGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 60
+GEIISRFEKKG K++G+K+ ++LAE+HY++ KPFF LI+YIT PVV M EG
Sbjct: 19 IGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEG 78
Query: 61 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR---NVVHGSDSPENGKREIGLWFKEG 117
V RK+ G+TDP A PGTIRGD ++ NV+H SDS E+ +REI L+FK
Sbjct: 79 RYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPE 138
Query: 118 ELCQWTPAQAQWLRE 132
EL ++ A A W +
Sbjct: 139 ELFEYPRA-ADWFYK 152
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 122 bits (306), Expect = 2e-37
Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 1 VGEIISRFEKKGFKLIGLKLF-QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWE 59
V EI+ R EKK FK++ +K + + P++L E+HYK+ + + +F +++ SGP++ + +E
Sbjct: 17 VAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYE 76
Query: 60 GAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 114
G ++ R+L G+ PGTIRGDLA N++H SDS ++ EI +WF
Sbjct: 77 GTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDSEDSAVDEISIWF 127
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 25.2 bits (55), Expect = 2.3
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 25 KDLAEEHYKDLNSKPFFPKLIEYITS 50
A + + K F + Y +
Sbjct: 178 LAYAMDFWSKGQLKALFLEHEGYFGA 203
>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase
{Alcaligenes faecalis [TaxId: 511]}
Length = 55
Score = 23.5 bits (51), Expect = 3.8
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 75 DPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREI 110
D A D+ V+ R G S + +R I
Sbjct: 13 DGTNAPG--RLADVGVRGDRIAAVGDLSASSARRRI 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.433
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 531,537
Number of extensions: 22578
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 20
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)