Your job contains 1 sequence.
>045707
MEDVKKRKMEDDNILINGQDFNSSSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAE
EIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFIT
YKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVL
LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD
THKGKPPQTQLPAAVVPVPLPLGAGYPQAGKAHANTPPVGYSYPQNVPPYPTSSYTSPNT
APVPYPTQPPISYPPIPLKKDPIGPIGHPATAPKRRIASILGRVSSNFVENPKKSLKIAF
LPTGSFYFAQTPRLFSKSLPFSNENVSKSPFVRKEAQAAMLEYLHLTRNLPFMDAEHMSK
NSPHFVEKLIERFENQLDVQRLIARFLRYHPINEFEPFFESLGLKPCEYSPFLPLNLMFL
SDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISK
VIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLG
CSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLN
LNQCLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPL
ELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFD
CLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEE
RIKLRFLMYNWLKDEGWIDGRLASSTLIAYSNKTFMQQFVNRHPKGPEVWQTFKKQIYSE
E
The BLAST search returned 11 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045707
(901 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2170209 - symbol:AT5G06810 "AT5G06810" species... 1201 4.0e-122 1
TAIR|locus:2133920 - symbol:AT4G19650 "AT4G19650" species... 1046 1.1e-105 1
TAIR|locus:504954990 - symbol:AT5G45113 "AT5G45113" speci... 756 5.7e-75 1
TAIR|locus:2103291 - symbol:SHOT1 "AT3G60400" species:370... 532 1.0e-50 1
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 477 1.1e-44 1
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 441 9.5e-41 1
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 437 2.6e-40 1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 280 2.1e-23 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 292 8.7e-23 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 260 3.0e-21 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 258 4.9e-21 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 257 6.2e-21 1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 257 6.2e-21 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 257 6.2e-21 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 256 7.9e-21 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 256 7.9e-21 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 256 7.9e-21 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 255 1.0e-20 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 255 1.0e-20 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 255 1.0e-20 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 254 1.3e-20 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 254 1.3e-20 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 254 1.3e-20 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 254 1.3e-20 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 254 1.3e-20 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 252 2.1e-20 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 251 2.7e-20 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 250 3.5e-20 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 249 4.5e-20 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 249 4.5e-20 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 248 5.7e-20 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 245 1.2e-19 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 245 1.2e-19 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 244 1.5e-19 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 244 1.5e-19 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 243 2.0e-19 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 243 2.0e-19 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 242 2.5e-19 1
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 242 2.5e-19 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 241 3.2e-19 1
UNIPROTKB|F1NBB6 - symbol:LOC100859627 "Uncharacterized p... 241 3.2e-19 1
UNIPROTKB|F1P5I0 - symbol:LOC100859627 "Uncharacterized p... 241 3.2e-19 1
UNIPROTKB|E7EWI9 - symbol:HNRNPA3 "Heterogeneous nuclear ... 240 4.1e-19 1
RGD|2321074 - symbol:LOC100360986 "mCG1035404-like" speci... 240 4.1e-19 1
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 239 5.3e-19 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 239 5.3e-19 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 5.3e-19 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 239 5.3e-19 1
RGD|69234 - symbol:Hnrnpa1 "heterogeneous nuclear ribonuc... 239 5.3e-19 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 239 5.3e-19 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 239 5.3e-19 1
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 238 6.8e-19 1
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 251 7.6e-19 1
UNIPROTKB|Q28521 - symbol:HNRNPA1 "Heterogeneous nuclear ... 237 8.6e-19 1
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 254 9.8e-19 1
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 254 9.8e-19 1
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 254 9.8e-19 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 256 1.0e-18 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 236 1.1e-18 1
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 236 1.1e-18 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 257 1.3e-18 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 235 1.4e-18 1
UNIPROTKB|F1M460 - symbol:F1M460 "Uncharacterized protein... 235 1.4e-18 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 256 2.1e-18 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 241 2.3e-18 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 245 2.6e-18 1
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 245 2.6e-18 1
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 245 2.6e-18 1
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 245 2.6e-18 1
UNIPROTKB|D4A6A2 - symbol:D4A6A2 "Uncharacterized protein... 232 3.0e-18 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 3.2e-18 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 230 4.9e-18 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 237 5.2e-18 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 242 6.0e-18 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 242 6.0e-18 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 229 6.2e-18 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 243 7.1e-18 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 244 8.8e-18 1
UNIPROTKB|F1LNG4 - symbol:Hnrnpa3 "Heterogeneous nuclear ... 240 1.3e-17 1
UNIPROTKB|J9NZR9 - symbol:J9NZR9 "Uncharacterized protein... 226 1.3e-17 1
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 239 1.3e-17 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 241 1.4e-17 1
UNIPROTKB|E1BZE6 - symbol:LOC100859627 "Uncharacterized p... 241 1.7e-17 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 237 2.1e-17 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 224 2.1e-17 1
UNIPROTKB|E2RFV7 - symbol:HNRNPA3 "Uncharacterized protei... 240 2.1e-17 1
UNIPROTKB|P51991 - symbol:HNRNPA3 "Heterogeneous nuclear ... 240 2.1e-17 1
UNIPROTKB|F2Z5B4 - symbol:HNRNPA3 "Uncharacterized protei... 240 2.2e-17 1
RGD|727807 - symbol:Hnrnpa3 "heterogeneous nuclear ribonu... 240 2.2e-17 1
UNIPROTKB|E1BEG2 - symbol:HNRNPA3 "Uncharacterized protei... 240 2.2e-17 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 239 2.5e-17 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 239 2.6e-17 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 239 2.6e-17 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 232 2.7e-17 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 237 3.5e-17 1
WARNING: Descriptions of 807 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2170209 [details] [associations]
symbol:AT5G06810 "AT5G06810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009536 "plastid" evidence=IDA] GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009536 EMBL:AP002032
InterPro:IPR003690 Pfam:PF02536 SMART:SM00733 IPI:IPI00534795
RefSeq:NP_196299.1 UniGene:At.32810 ProteinModelPortal:Q9FG25
PaxDb:Q9FG25 PRIDE:Q9FG25 EnsemblPlants:AT5G06810.1 GeneID:830572
KEGG:ath:AT5G06810 TAIR:At5g06810 eggNOG:NOG311358
HOGENOM:HOG000152451 InParanoid:Q9FG25 OMA:CDILESK PhylomeDB:Q9FG25
ProtClustDB:CLSN2916533 Genevestigator:Q9FG25 Uniprot:Q9FG25
Length = 1141
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 253/568 (44%), Positives = 360/568 (63%)
Query: 340 ILGRVSSNFVENPKKSLKIAFLPTGSFYFAQTPRLFSKSLPFSNENVSKSPFVRKEAQAA 399
+L VS F E P K +++ P +FA L + + +RK AQ A
Sbjct: 574 LLNWVSQAFAETPLKP-QLSRNPR---FFATQRALVDAEVSGEKWGLRTRNEIRKVAQVA 629
Query: 400 MLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERF-------ENQLDVQRLIARFLRYHPI 452
M +Y + TR L F+ AE MSKN+P F + L+++ ++ D+ + I RFL +HP+
Sbjct: 630 MFDYFYQTRGLQFLVAESMSKNAPVFNDNLLKKLNGCDVDVDDDDDIVKAITRFLWFHPV 689
Query: 453 NEFEPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEARE 512
NEFEPF ESLGLKP E+S +P + MFL++D LLENYHV NYG+ R K+GKI KEARE
Sbjct: 690 NEFEPFLESLGLKPSEFSHLIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFKEARE 749
Query: 513 VFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESC 572
VF ++ GV SK+ +YE LG S+ F+SK+IVCSP +LIGD+N +V+++LK++
Sbjct: 750 VFGYETGVLASKIKSYEDLGFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLKAIGFGVD 809
Query: 573 WIEEHLLEQETFNWSXXXXXXXXXXNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLL 632
W+ E+L E+ +++WS +L + +L LIR+ P L+FE SG L + G
Sbjct: 810 WVTENLSEEVSYDWSSMHRCLSFLRDLYVDENELCELIRKMPRLIFEDSGEWTLILAGFE 869
Query: 633 LKFGSTRNELCSIFLQFPQIE-VRKXXXXXXXXXXXXXEIKMKVDEIGKILRCHFLLVGS 691
K GS+R+EL S+F +FPQ + + K +I+M DEIGKI R H L +G
Sbjct: 870 AKLGSSRSELSSLFQKFPQCQSLGKFVLNLRHCFLFLKDIEMDDDEIGKIFRLHSLWIGV 929
Query: 692 CTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAE----KERSQLLRTK 747
LK+T+T+L L GK RLC+ IQENP E+KK +G RV LPA +S+ ++T+
Sbjct: 930 SRLKQTSTLLINLKGGKGRLCQVIQENPEEMKKWIMGLRVQPLPATGYKVNTKSKTMKTQ 989
Query: 748 FLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVSPQILNMKK 807
FLLD+GY ENS EM +ALK+FRG+G+EL+ERF+ LV+ GL KDV +M++ P IL
Sbjct: 990 FLLDLGYKENSEEMERALKNFRGKGSELRERFNVLVSFGLTEKDVKDMVKACPSILTQAC 1049
Query: 808 DVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWIDGRLASSTL 867
D+++SK+++LV LGYPLS LV+FP+ YT +R+KLRF M++WL+D G D +L ST+
Sbjct: 1050 DILESKVNYLVKELGYPLSTLVTFPTCLKYTLQRMKLRFSMFSWLQDRGKADPKLQVSTI 1109
Query: 868 IAYSNKTFMQQFVNRHPKGPEVWQTFKK 895
+ S+K F +FVNRHP GP+ + KK
Sbjct: 1110 LVCSDKFFATRFVNRHPDGPKHLEDLKK 1137
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 251/581 (43%), Positives = 367/581 (63%)
Query: 336 RIASILGRVSSNFVENPKKSLKIAFLPTGSFY-FAQTPRLFS----------KSLPFSNE 384
R S+L VS +E LK + TG AQTPR F+ KS
Sbjct: 9 RFTSVLKWVSQLSLET---QLKPSISGTGFLLRCAQTPRSFATVTGNEVCSEKSKVKRTR 65
Query: 385 NVSK-SPFVRKEAQAAMLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERFE--NQLDVQR 441
N K +P VRK A+ AML+Y + TR L +M AE MSKNSP F++ L+++ + D+ +
Sbjct: 66 NGFKITPNVRKLAEEAMLDYFYSTRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQ 125
Query: 442 LIARFLRYHPINEFEPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARN 501
I R+LR+HP+NEFEPF ES GL P EY+ +P + +FL ++ LLEN+HVLC GV
Sbjct: 126 SITRYLRFHPVNEFEPFLESSGLNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPK 185
Query: 502 KIGKILKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVL 561
+IGKI KEAREVF ++ GV SK+ AYE LG S+ F+SK+IVCSP +L+G N E V+V+
Sbjct: 186 RIGKIFKEAREVFSYETGVLASKIKAYEDLGFSRLFLSKLIVCSPRVLMGHTNIELVQVV 245
Query: 562 QILKSMEIESCWIEEHLLEQETFNWSXXXXXXXXXXNLGCSDEQLGGLIRQHPGLLFEGS 621
+ L+S+ E W+ E+L ++ +WS + +E+L GLIR P LLFE S
Sbjct: 246 KTLQSLGFEFEWVMENLSDEGP-DWSSVHRVLSLLREICFDEEKLYGLIRNCPSLLFENS 304
Query: 622 GSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKXXXXXXXXXXXXXEIKMKVDEIGKI 681
G ++G K G++R+ELCS+F +FP I+V K EI+M+ DEI K+
Sbjct: 305 GKWTGILVGFETKLGASRSELCSLFQKFPLIQVEKCVSNLRQCFLFLKEIEMEDDEIHKV 364
Query: 682 LRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKE-- 739
R H +GSC LKKT+++L +L GK R+C+ IQENP E+KK +GS++ LPA
Sbjct: 365 FRSHSWWLGSCKLKKTSSLLVFLKAGKTRVCQVIQENPEEMKKWTMGSKIQPLPATNVDI 424
Query: 740 RSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVS 799
S+ ++T+FLLD+GY ENS EM A+K+FRG+G+EL+ERF+ LV+ G +KDV +M++
Sbjct: 425 ESKSMKTQFLLDLGYKENSEEMETAMKNFRGKGSELRERFNVLVSLGFTKKDVKDMVKAC 484
Query: 800 PQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWID 859
P +L+ D+++SK+++L+ LGYPLS LV FPS +T +R+KLRF M++WL+ G +D
Sbjct: 485 PTMLSQTCDILESKVNYLIKELGYPLSTLVDFPSCLKFTLQRMKLRFAMFSWLQARGKVD 544
Query: 860 GRLASSTLIAYSNKTFMQQFVNRHPKGPEVWQTFKKQIYSE 900
++ ST++A S+K F+ F+ R+P+ + + Q ++E
Sbjct: 545 RKIKVSTMLACSDKIFVMSFM-RNPRFKSLLLNWVSQAFAE 584
>TAIR|locus:2133920 [details] [associations]
symbol:AT4G19650 "AT4G19650" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR003690 Pfam:PF02536
SMART:SM00733 IPI:IPI00537653 RefSeq:NP_193700.2 UniGene:At.54414
ProteinModelPortal:F4JTX3 PRIDE:F4JTX3 EnsemblPlants:AT4G19650.1
GeneID:827709 KEGG:ath:AT4G19650 OMA:NPINEFE ArrayExpress:F4JTX3
Uniprot:F4JTX3
Length = 575
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 211/511 (41%), Positives = 308/511 (60%)
Query: 388 KSPFVRKEAQAAMLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERFE-NQLDVQRLIARF 446
++P R +A + + L + EH+SKNSP F+ L+ + + NQ DV + + +F
Sbjct: 63 QNPVQRLKAVFVRINLSYNNTRLTYQ-LEHISKNSPCFMSTLLSKIDDNQKDVSKGLTKF 121
Query: 447 LRYHPINEFEPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKI 506
LRY+PINEFEPFFESLGL P E+ FLP LMFLSDD ++ EN+H LCNYG+ R KIG++
Sbjct: 122 LRYNPINEFEPFFESLGLCPYEFETFLPRKLMFLSDDGIMFENFHALCNYGIPRGKIGRM 181
Query: 507 LKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKS 566
KEARE+F+++ G+ KL YE LGLS++ + K++ P LL+G ++ EF V+ LK
Sbjct: 182 YKEAREIFRYESGMLAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAEFSSVVDKLKG 241
Query: 567 MEIESCWIEEHLLEQETFNWSXXXXXXXXXXNLGCSDEQLGGLIRQHPGLLFEGSGSIAL 626
+++ W+ +L +++T++W +GC +E+L L++ +P L+ EGSG
Sbjct: 242 LQVGCDWLGRYLSDRKTYSWRRILETIEFLDKVGCKEEKLSSLLKTYPALVIEGSGKKFY 301
Query: 627 TMIGLLLKFGSTRNELCSIFLQFPQIEVRKXXXXXXXXXXXXXEIKMKVDEIGKILRCHF 686
+ G L K G NE+ +F+ P++ K I+M+ I KIL H
Sbjct: 302 VLFGRLFKAGLQVNEIYRLFIDNPEMLSDKCVKNIQKTLDFLIAIRMETQFITKILLSHM 361
Query: 687 LLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGS--RVGRLPAEKERSQLL 744
L+GSC+L T LNV + LC+ +++ PL L + R + +E R L
Sbjct: 362 ELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLRLFCFVSTTKKRKSKPLSEDSRKYLE 421
Query: 745 RTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVSPQILN 804
+T+FLL +GYVENS+EM KALK FRGRG +LQERFDCLV AGL+ V E+IR +P ILN
Sbjct: 422 KTEFLLRLGYVENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNYNVVTEIIRHAPMILN 481
Query: 805 MKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWIDGRLAS 864
+ KDVI+ KI L LGYP+ LV FP+Y Y +RI RF MY WL++ L+
Sbjct: 482 LSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMQRIHHRFSMYLWLRERDAAKPMLSP 541
Query: 865 STLIAYSNKTFMQQFVNRHPKGPEVWQTFKK 895
ST++ + F++ FVN HP+GP +W++ +
Sbjct: 542 STILTCGDARFVKYFVNVHPEGPAIWESINQ 572
>TAIR|locus:504954990 [details] [associations]
symbol:AT5G45113 "AT5G45113" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR
InterPro:IPR003690 Pfam:PF02536 EMBL:AB019224 IPI:IPI00539018
RefSeq:NP_680395.1 UniGene:At.65638 ProteinModelPortal:Q3E8G9
EnsemblPlants:AT5G45113.1 GeneID:834546 KEGG:ath:AT5G45113
TAIR:At5g45113 eggNOG:NOG277421 HOGENOM:HOG000272714
InParanoid:Q3E8G9 OMA:ATWENIK PhylomeDB:Q3E8G9
ProtClustDB:CLSN2917855 Genevestigator:Q3E8G9 Uniprot:Q3E8G9
Length = 414
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 150/411 (36%), Positives = 237/411 (57%)
Query: 486 LLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCS 545
+ EN+HVLC YG+ R+KIG++ KEARE+F ++ GV SKL YE+L L ++ + K++ C
Sbjct: 1 MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60
Query: 546 PYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSXXXXXXXXXXNLGCSDEQ 605
P LL+G ++ EFV V+ LK + + W+ +L ++T+NW +G +++
Sbjct: 61 PLLLVGGIDCEFVSVVNKLKGLNLGCDWLARYLSVRKTYNWRRILETMELLEKVGFKEKK 120
Query: 606 LGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKXXXXXXXXX 665
L L++ +P L+ E SG+ A M K G NE+ + + ++ + K
Sbjct: 121 LSNLLKAYPDLVGETSGNKAYIMFEKFHKVGLQMNEIDKLLIDNSEMLLEKSVKRILEAL 180
Query: 666 XXXXEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKL 725
I+++ + + L+CH + S +L + L + + LC+ I+E PL L +
Sbjct: 181 KFLKCIRIEKQFVVRFLQCHMKHICSSSLLVPRAVWNRLKIRRDELCQIIKEEPLRLFSI 240
Query: 726 ALGSRVGRLPAEKERSQLL-RTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVN 784
A + GR+ + S+ +T FLL +GYVENS+EM +ALK F+GRG ELQERFDC V
Sbjct: 241 ASKTNKGRIELDSLDSRNAEKTTFLLKLGYVENSDEMVRALKKFQGRGDELQERFDCFVK 300
Query: 785 AGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKL 844
AGLD V ++++ +P ILN KD+I+ KI L++YL YP+ ++ P+Y Y+ +RI
Sbjct: 301 AGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLIDYLVYPIESVIESPTYLCYSMKRIHQ 360
Query: 845 RFLMYNWLKDEGWIDGRLASSTLIAYSNKTFMQQFVNRHPKGPEVWQTFKK 895
RF MY WL++ + RL T++ SN + FVN HP+GP W+ KK
Sbjct: 361 RFTMYIWLRERDAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATWENIKK 411
>TAIR|locus:2103291 [details] [associations]
symbol:SHOT1 "AT3G60400" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL138646 InterPro:IPR003690 Pfam:PF02536 SMART:SM00733
IPI:IPI00545820 PIR:T47851 RefSeq:NP_191599.1 UniGene:At.34455
ProteinModelPortal:Q9M219 SMR:Q9M219 PRIDE:Q9M219
EnsemblPlants:AT3G60400.1 GeneID:825211 KEGG:ath:AT3G60400
TAIR:At3g60400 eggNOG:NOG285291 HOGENOM:HOG000242270
InParanoid:Q9M219 OMA:ESIGIDY PhylomeDB:Q9M219
ProtClustDB:CLSN2685047 Genevestigator:Q9M219 Uniprot:Q9M219
Length = 558
Score = 532 (192.3 bits), Expect = 1.0e-50, P = 1.0e-50
Identities = 141/512 (27%), Positives = 244/512 (47%)
Query: 395 EAQAAMLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERFENQLDV-QRLIARFLRYHPIN 453
+AQ A+ +YLH TR+L + AE ++ N+ + LI + + + + + + L YHPIN
Sbjct: 36 KAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSYHPIN 95
Query: 454 EFEPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREV 513
EFE FFES+G+ E S FLP F S+D +L+ L +G NK+GK+ KE R V
Sbjct: 96 EFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLV 155
Query: 514 FQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIG--DVNTEFVEVLQILKSMEIES 571
F G +S+L ++ +G S + + P L G ++ +E + LK + E
Sbjct: 156 FVQRPGEIESRLLKFKDIGFSTVAVIGTCLAIPRTLCGGGELGSEIRCLFVKLKRLFDE- 214
Query: 572 CWIEEHLLEQETFNWSXXXXXXXXXXNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGL 631
+ HL E+ +W +LGC +E++ L+ ++ L E S + G
Sbjct: 215 -FDSHHLFEENVDSWLAVSRKIRIFYDLGCENEEMWELMCRNKSLFLEYSEEALMNKAGY 273
Query: 632 LLKFGSTRNELCSIFLQFPQIEVRKXXXXXXXXXXXXXEIKMKVDEIGKILRCHFLLVGS 691
+FG ++ + + L+ P I ++ DE+ + + + + G
Sbjct: 274 FCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFGLRQDEVDAVAQKYPYVFGR 333
Query: 692 CTLKKTNTILAYLNVGKK-----------RLCEYIQENPLELKKLALGSRVGRLPAEK-E 739
LK +L +++ ++ L Y +P E + + L + +
Sbjct: 334 NQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTLMDPDEDLEREYQEGLEELQNSRTK 393
Query: 740 RSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVS 799
R + + FL ++G+ EN M K L+H G EL +RF L+N+G+ +C +IR +
Sbjct: 394 RHNIQKLDFLHEIGFGENGITM-KVLQHVHGTAVELHDRFQILLNSGIIFSKICMLIRSA 452
Query: 800 PQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYT-EERIKLRFLMYNWLKDEGWI 858
P+ILN K I+ K+ FL +G L +L FP+Y + E RI RF + WL ++G+
Sbjct: 453 PKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLENRISPRFRFHKWLVEKGFS 512
Query: 859 DGRLASSTLIAYSNKTFMQQFVNRHPKGPEVW 890
+ + ++++A S K F+ + HP P+ W
Sbjct: 513 EKSYSIASIVATSEKAFIARLYGIHPAIPKHW 544
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 477 (173.0 bits), Expect = 1.1e-44, P = 1.1e-44
Identities = 104/258 (40%), Positives = 156/258 (60%)
Query: 1 MEDVKKRKMEDDNILIN---GQDFNXXXXXXQDHLRSLLDPLSKSQLVDLLSRLGSQYPS 57
M+ +KKRK++++ +N G QD R +++ + QL+DLL ++P
Sbjct: 1 MDMMKKRKLDENGNGLNTNGGGTIGPTRLSPQD-ARKIIERFTTDQLLDLLQEAIVRHPD 59
Query: 58 IAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYG 117
+ E ++ A +D RKLF+RGLA +TT+E L + F +G++EE VI DK TGKS+GYG
Sbjct: 60 VLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119
Query: 118 FITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGV-SAVPDLAQRKLYIGGLSPEVT 176
F+T+ H++ AL+ PSK IDGR+ V LA G G S + D++ RK+Y+ + ++
Sbjct: 120 FVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMP 179
Query: 177 TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIV 236
+ LLN F +G++EEG + +DK T +SRGF YKT E A+ A+ DP K + G+ +
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNC 239
Query: 237 KLA-DTHKG-KP--PQTQ 250
KLA D KG KP PQ Q
Sbjct: 240 KLAVDGKKGGKPGMPQAQ 257
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 441 (160.3 bits), Expect = 9.5e-41, P = 9.5e-41
Identities = 94/233 (40%), Positives = 136/233 (58%)
Query: 32 LRSLLDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCA 91
++ LL+P SK Q++ LL ++ +A I+ VA DPVHRK+FV GL W+T +ETL
Sbjct: 99 IQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIE 158
Query: 92 AFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
AF+ +GEIE+ ++DK +GKS+GYGFI YK ++AL+ P K I R+ C LA +G
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 152 ---------LSGVSAVP-----DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAY 197
+ VSA + Q+K+Y+ + E+ + LL FF + GEIEEG +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGL 278
Query: 198 DKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI-IVKLADTHK-GKPPQ 248
DK T +GF YK+ E+AK+A+++PHKT G + K D K GK Q
Sbjct: 279 DKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGKQQQ 331
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 437 (158.9 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 86/214 (40%), Positives = 130/214 (60%)
Query: 29 QDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSET 88
++ + LL+P SK QL+ LL ++ +A I+ VA D VHRK+FV GL W+T +++
Sbjct: 84 EEPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADS 143
Query: 89 LCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148
L AF+ +GEIE+ + DK +G+S+GYGFI +K ++AL+ P K I R+ C LA
Sbjct: 144 LIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLA 203
Query: 149 CEG-LSGVSAV-------PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKD 200
G + G V P+ QRK+Y+ +S ++ + LL FF R GEIEEG + DK
Sbjct: 204 SIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKA 263
Query: 201 TNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI 234
T +GF Y+++E+AKKA+++PHKT G +
Sbjct: 264 TGRPKGFALFVYRSLESAKKALEEPHKTFEGHVL 297
Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 155 VSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT 214
+ A DL RK+++ GL + + L++ F ++GEIE+ DK + +S+G+GF+ +K+
Sbjct: 119 IVADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Query: 215 VEAAKKAVDDPHKTLGGRTIIVKLA 239
A+ A+ P K +G R +LA
Sbjct: 179 RSGARNALKQPQKKIGTRMTACQLA 203
Score = 144 (55.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSA 130
V RK++V ++ + + L F GEIEEG + DKATG+ +G+ Y+ +ES + A
Sbjct: 225 VQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKA 284
Query: 131 LRAPSKLIDGRLAVCNLACEG 151
L P K +G + C+ A +G
Sbjct: 285 LEEPHKTFEGHVLHCHKANDG 305
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 280 (103.6 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 61/125 (48%), Positives = 76/125 (60%)
Query: 30 DHLRSLLDPLSKSQLVDLL---SRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTS 86
+ LR LL P SK QLVDL+ SR+GS SI + A D HRK+FV GL W TT
Sbjct: 61 EELRELLQPYSKDQLVDLVCSASRIGS---SIYSAVVEAADRDVTHRKIFVYGLPWETTR 117
Query: 87 ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146
ETL F +GEIEE V+ DKATGK++G+GF+ +K + + AL+ P K I R A C
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQ 177
Query: 147 LACEG 151
LA G
Sbjct: 178 LASMG 182
Score = 177 (67.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 48/122 (39%), Positives = 70/122 (57%)
Query: 125 ESTQSALRAPSK--LIDGRLAVCNLACEGLSGVSAVP-----DLAQRKLYIGGLSPEVTT 177
E + L+ SK L+D VC+ + G S SAV D+ RK+++ GL E T
Sbjct: 61 EELRELLQPYSKDQLVD---LVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTR 117
Query: 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVK 237
E L+ F +GEIEE +V DK T +++GFGFV +KT + AK+A+ +P K + RT +
Sbjct: 118 ETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQ 177
Query: 238 LA 239
LA
Sbjct: 178 LA 179
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 292 (107.8 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 66/184 (35%), Positives = 102/184 (55%)
Query: 56 PSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRG 115
P+ S SA RK F+ GL+W+TT E L + F+ +G I + ++ D ATG+SRG
Sbjct: 145 PAPTANATSAESAGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRG 204
Query: 116 YGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEV 175
+GF+T++ +S + L+ ++DG+L + +S K+++GG+ P V
Sbjct: 205 FGFLTFEDAKSVDALLK-DRHVLDGKLI------DPKRAISKEDQEKVGKIFVGGIDPMV 257
Query: 176 TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTII 235
T E NFF + G+I + + DKDT SRGFGFVTY + A K + + TL G+ +
Sbjct: 258 TEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVNKYLTLKGKAME 317
Query: 236 VKLA 239
VK A
Sbjct: 318 VKRA 321
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 260 (96.6 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 66/205 (32%), Positives = 102/205 (49%)
Query: 36 LDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHR-KLFVRGLAWNTTSETLCAAFR 94
L LS+ + D G AE K AS + K+F+ GL+W+T+ + L
Sbjct: 29 LTALSRPAMEDATEMSGGA-EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLS 87
Query: 95 VHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSG 154
GE+ + + D TG+SRG+GF+ +K S + L +DG+L A + L G
Sbjct: 88 RFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA-KALKG 146
Query: 155 VSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT 214
P +K+++GGLSP+ + E + +FG GEIE + D TNE RGF F+TY
Sbjct: 147 KEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 201
Query: 215 VEAAKKAVDDPHKTLGGRTIIVKLA 239
E KK ++ + +G +K+A
Sbjct: 202 EEPVKKLLESRYHQIGSGKCEIKVA 226
Score = 138 (53.6 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + +K ++
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 127 KEHKLDGKLIDPKRAKALKGKEP 149
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 258 (95.9 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 59/188 (31%), Positives = 100/188 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 50 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 109 RSRGFGFILFKDATSVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 161
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG GEIE + D +N+ RGF F+T+K E KK ++ T+ G
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISG 221
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 222 SKCEIKVA 229
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 257 (95.5 bits), Expect = 6.2e-21, P = 6.2e-21
Identities = 69/213 (32%), Positives = 104/213 (48%)
Query: 33 RSLLDPLSKSQLVDLL-SRLGSQYPSIAEEIKSVASADPVH-----RKLFVRGLAWNTTS 86
RS L PL +S L S PS++ S DP K+F+ GL+W+T+
Sbjct: 6 RSAL-PLPQSPARALRPSGAARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSK 64
Query: 87 ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146
+ L GE+ + + D TG+SRG+GF+ +K S L +DG+L
Sbjct: 65 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPK 124
Query: 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206
A + L G P +K+++GGLSP+ + E + +FG GEIE + D TNE RG
Sbjct: 125 RA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 178
Query: 207 FGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
F F+TY E KK ++ + +G +K+A
Sbjct: 179 FCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 211
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 39/118 (33%), Positives = 57/118 (48%)
Query: 130 ALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189
A RA L R + C L S+ P + K++IGGLS + + + L + R GE
Sbjct: 24 AARAAPSLSPSRFSACPL------DPSSFPT-SGNKMFIGGLSWDTSKKDLTEYLSRFGE 76
Query: 190 IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
+ + ++ D T SRGFGFV +K + K ++ L G+ I K A KGK P
Sbjct: 77 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 257 (95.5 bits), Expect = 6.2e-21, P = 6.2e-21
Identities = 69/213 (32%), Positives = 104/213 (48%)
Query: 33 RSLLDPLSKSQLVDLL-SRLGSQYPSIAEEIKSVASADPVH-----RKLFVRGLAWNTTS 86
RS L PL +S L S PS++ S DP K+F+ GL+W+T+
Sbjct: 6 RSAL-PLPQSPARALRPSGAARAAPSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSK 64
Query: 87 ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146
+ L GE+ + + D TG+SRG+GF+ +K S L +DG+L
Sbjct: 65 KDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPK 124
Query: 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206
A + L G P +K+++GGLSP+ + E + +FG GEIE + D TNE RG
Sbjct: 125 RA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 178
Query: 207 FGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
F F+TY E KK ++ + +G +K+A
Sbjct: 179 FCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 211
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 39/118 (33%), Positives = 57/118 (48%)
Query: 130 ALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189
A RA L R + C L S+ P + K++IGGLS + + + L + R GE
Sbjct: 24 AARAAPSLSPSRFSACPL------DPSSFPT-SGNKMFIGGLSWDTSKKDLTEYLSRFGE 76
Query: 190 IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
+ + ++ D T SRGFGFV +K + K ++ L G+ I K A KGK P
Sbjct: 77 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP 134
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 257 (95.5 bits), Expect = 6.2e-21, P = 6.2e-21
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K ES L
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + + G P +K+++GGLSP++T E L +FG +GEIE
Sbjct: 91 TEHKLDGKLIDPKRA-KAIKGKEP-P----KKVFVGGLSPDITEEQLREYFGVYGEIESI 144
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF FVT+ E +K +++ + +G +K+A
Sbjct: 145 ELPTDTKTNERRGFCFVTFALEEPVQKLLENRYHQIGSGKCEIKVA 190
Score = 138 (53.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L ++ R GE+ + ++ D T SRGFGFV +K E+ + ++
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 91 TEHKLDGKLIDPKRAKAIKGKEP 113
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 256 (95.2 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 56/166 (33%), Positives = 89/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S + L
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G P +K+++GGLSP+ + E + +FG GEIE
Sbjct: 91 KEHKLDGKLIDPKRA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 144
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 145 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 190
Score = 138 (53.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + +K ++
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEP 113
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 256 (95.2 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 56/166 (33%), Positives = 89/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K S + L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGRL + ++ D +K+++GGL+PE T E + +FG GEIE
Sbjct: 61 KEHRLDGRLI------DPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAI 113
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TN+ RGF F+T+K + KK ++ + G +K+A
Sbjct: 114 ELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVA 159
Score = 133 (51.9 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K ++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP 82
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 256 (95.2 bits), Expect = 7.9e-21, P = 7.9e-21
Identities = 56/166 (33%), Positives = 89/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K S + L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGRL + ++ D +K+++GGL+PE T E + +FG GEIE
Sbjct: 61 KEHRLDGRLI------DPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAI 113
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TN+ RGF F+T+K + KK ++ + G +K+A
Sbjct: 114 ELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFHNVSGSKCEIKVA 159
Score = 133 (51.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K ++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP 82
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 255 (94.8 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 59/188 (31%), Positives = 99/188 (52%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 50 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 109 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 161
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG GEIE + D N+ RGF F+T+K E KK ++ T+ G
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSG 221
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 222 SKCEIKVA 229
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 255 (94.8 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 59/188 (31%), Positives = 99/188 (52%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 50 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 109 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 161
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG GEIE + D N+ RGF F+T+K E KK ++ T+ G
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSG 221
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 222 SKCEIKVA 229
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 255 (94.8 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 59/188 (31%), Positives = 99/188 (52%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 50 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 108
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 109 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 161
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG GEIE + D N+ RGF F+T+K E KK ++ T+ G
Sbjct: 162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSG 221
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 222 SKCEIKVA 229
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/188 (30%), Positives = 100/188 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 55 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 166
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG+ GEIE + D N+ RGF F+T+K + KK ++ T+ G
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 227 SKCEIKVA 234
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/188 (30%), Positives = 100/188 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 54 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 112
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 113 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 165
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG+ GEIE + D N+ RGF F+T+K + KK ++ T+ G
Sbjct: 166 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 225
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 226 SKCEIKVA 233
Score = 139 (54.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 135 KEHRLDGRVIDPKKAMAMKKDP 156
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/188 (30%), Positives = 100/188 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 55 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 166
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG+ GEIE + D N+ RGF F+T+K + KK ++ T+ G
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 227 SKCEIKVA 234
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/188 (30%), Positives = 100/188 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 55 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 166
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG+ GEIE + D N+ RGF F+T+K + KK ++ T+ G
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 227 SKCEIKVA 234
Score = 139 (54.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 254 (94.5 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G P +K+++GGLSP+ + E + +FG GEIE
Sbjct: 90 KEHKLDGKLIDPKRA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 143
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 144 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 189
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + K ++
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEP 112
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 252 (93.8 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K S + L
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR+ + ++ D +K+++GGL+PE T E + +FG+ GEIE
Sbjct: 149 KEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGQFGEIEAI 201
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D N+ RGF F+T+K + KK ++ T+ G +K+A
Sbjct: 202 ELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVA 247
Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 149 KEHRLDGRVIDPKKAMAMKKDP 170
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 251 (93.4 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 60/179 (33%), Positives = 96/179 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV LA++ S+ L F G +E VIY++ T +SRG+GF+T ++ ++A+
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 134 PSKL-IDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEI 190
++ ++GRL N A S P + + ++Y+G L +V L F HG++
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKPPQ 248
E V YD++T SRGFGFVT V+ +A+ + L GR I V +A+ +PP+
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE---RPPR 326
Score = 144 (55.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+ KL++G L+ +V ++ L F + G +E V Y+++T++SRGFGFVT +V+ A+ AV
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 223 DDPHK-TLGGRTIIVKLADTHKGKP 246
+ ++ L GR + V A +P
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRP 233
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 250 (93.1 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 58/188 (30%), Positives = 99/188 (52%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + TG
Sbjct: 44 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTG 102
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+S+G+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 103 RSKGFGFILFKDAASVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 155
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG GEIE + D TN+ RGF F+T+K E KK ++ T+ G
Sbjct: 156 NPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEKKFHTISG 215
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 216 SKCEIKVA 223
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ +T S+GFGF+ +K + +K +D
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 125 KEHRLDGRVIDPKKAMAMKKDP 146
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 249 (92.7 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 54/158 (34%), Positives = 86/158 (54%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K S + L
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR+ + ++ D +K+++GGL+PE T E + +FG GEIE
Sbjct: 61 KEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAI 113
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+ D +N+ RGF F+T+K E KK ++ T+ G
Sbjct: 114 ELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHTISG 151
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP 82
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 249 (92.7 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K +S L+
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR + + + P +K+++GGL+PE T E + +FG GEIE
Sbjct: 106 KEHRLDGR----QIDPKRAMAIKKEP---VKKIFVGGLNPETTEEKIREYFGSFGEIETI 158
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D T++ RGF F+T+K A KK ++ + + G +K+A
Sbjct: 159 ELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSKCEIKIA 204
Score = 138 (53.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 36/123 (29%), Positives = 64/123 (52%)
Query: 124 MESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNF 183
ME++++ L G A N A EGL ++ + K+++GGLS + + + L ++
Sbjct: 7 METSENGNE--ENLNGGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDY 64
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHK 243
F + GE+ + ++ D +T SRGFGF+ +K ++ + + L GR I K A K
Sbjct: 65 FSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIK 124
Query: 244 GKP 246
+P
Sbjct: 125 KEP 127
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 248 (92.4 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 60/176 (34%), Positives = 91/176 (51%)
Query: 64 SVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKH 123
S S DP K+F+ GL+W TT+E L F GE+ E V+ D AT ++RG+GFIT+
Sbjct: 38 SHGSQDP--GKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVD 95
Query: 124 MESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNF 183
S L +DG+ +A + V +K++IGGLS T E + +
Sbjct: 96 PSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT--KKVFIGGLSATSTLEDMKQY 153
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
F +G++E+ + +DK T RGFGFVT+ + E A K + + G+ + K A
Sbjct: 154 FETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Score = 147 (56.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 38/111 (34%), Positives = 56/111 (50%)
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG 188
+ LR S +DG L + G D K++IGGLS + T E L ++FGR G
Sbjct: 13 ATLRETSPPVDGH-EEARLNADSDDGSHGSQDPG--KMFIGGLSWQTTAENLRDYFGRFG 69
Query: 189 EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
E+ E V D T +RGFGF+T+ + K +++ L G+ I K+A
Sbjct: 70 EVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVA 120
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 42/151 (27%), Positives = 70/151 (46%)
Query: 56 PSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRG 115
P +A ++ A +K+F+ GL+ +T E + F +G++E+ +++DKAT + RG
Sbjct: 117 PKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRG 176
Query: 116 YGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVPD--LAQRKLYIGGL 171
+GF+T+ E I+G++ C A E + V A R LY G+
Sbjct: 177 FGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLY--GM 234
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTN 202
PE T + R G G++ Y TN
Sbjct: 235 PPE-TLLAYAQYLPRFG----GNLMYPNFTN 260
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 245 (91.3 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 204 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 263
Query: 246 PPQTQ 250
Q Q
Sbjct: 264 QQQQQ 268
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 245 (91.3 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 23 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 82
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 83 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 136
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 137 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 196
Query: 246 PPQTQ 250
Q Q
Sbjct: 197 QQQQQ 201
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 244 (91.0 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 59/189 (31%), Positives = 99/189 (52%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 49 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 107
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ + ++ D +K+++GGL
Sbjct: 108 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVI------DPKKAMAMKKDPV-KKIFVGGL 160
Query: 172 SPEVTTEVLLN-FFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLG 230
+PE TE + +FG GEIE + D N+ RGF F+T+K E KK ++ T+
Sbjct: 161 NPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS 220
Query: 231 GRTIIVKLA 239
G +K+A
Sbjct: 221 GSKCEIKVA 229
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP 151
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 244 (91.0 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/177 (30%), Positives = 93/177 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
++G++ A + + V +K+++GGLSP+ E + +FG GE+E
Sbjct: 61 KEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFGAFGEVESI 114
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ D TN+ RGF F+T+K E KK ++ + +G +K+A + + Q Q
Sbjct: 115 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 171
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 243 (90.6 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 54/177 (30%), Positives = 93/177 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
++G++ A + + V +K+++GGLSP+ E + +FG GE+E
Sbjct: 106 KEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFGGFGEVESI 159
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ D TN+ RGF F+T+K E KK ++ + +G +K+A + + Q Q
Sbjct: 160 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 216
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 243 (90.6 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 54/177 (30%), Positives = 93/177 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
++G++ A + + V +K+++GGLSP+ E + +FG GE+E
Sbjct: 62 KEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFGGFGEVESI 115
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ D TN+ RGF F+T+K E KK ++ + +G +K+A + + Q Q
Sbjct: 116 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 172
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 242 (90.2 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 55/185 (29%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F G++ + + D TG+SRG+GF+ +K E
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 201
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 202 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 261
Query: 246 PPQTQ 250
Q Q
Sbjct: 262 QQQQQ 266
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 242 (90.2 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 54/177 (30%), Positives = 94/177 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES + +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
++G++ A + + V +K+++GGLSP+ E + +F +GE+E
Sbjct: 115 KEHKLNGKVIDPKKA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFDAYGEVESI 168
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ + TN+ RGF F+T+K E KK ++ + +G VK+A + + Q Q
Sbjct: 169 ELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSKEQYQQQQQ 225
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 241 (89.9 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 54/166 (32%), Positives = 87/166 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K ES L
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGRL + ++ D +K+++GGL+PE + + +F GEIE
Sbjct: 125 KEHRLDGRLI------DPKKAMAMKKDPI-KKIFVGGLNPEAGEDQIREYFETFGEIEAI 177
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TN+ RGF F+T+K + KK ++ + G +K+A
Sbjct: 178 ELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFHNVSGSKCEIKIA 223
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K E+ K ++
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDP 146
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 241 (89.9 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L +F ++G+IE
Sbjct: 81 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIET 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 141 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 187
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 241 (89.9 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L +F ++G+IE
Sbjct: 69 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIET 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 129 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 175
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 240 (89.5 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 132
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 133 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 240 (89.5 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 53/176 (30%), Positives = 92/176 (52%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
++G++ A + + V +K+++GGLSP+ E + +FG GE+E
Sbjct: 61 EHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFGAFGEVESIE 114
Query: 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ D TN+ RGF F+T+K E KK ++ + +G +K+A + + Q Q
Sbjct: 115 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 170
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 239 (89.2 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 238 (88.8 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 59/170 (34%), Positives = 93/170 (54%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL TT E L A F +G++ + V+ ++ +SR +GF+TY E +A+ A
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPD-LAQ-RKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
++DG A + P+ LA+ +K+++GGL ++ E L ++F + G IE
Sbjct: 67 RPHIVDGNNVDLKRAVARED--AGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIE 124
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241
+ V DKDT + RGFGFV + ++A KAV ++ G + VK A T
Sbjct: 125 KAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKALT 174
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 251 (93.4 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 54/169 (31%), Positives = 89/169 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV G++W TT+ET F GE+ + ++ D+ TG RG+GF+T+ + L
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+ D ++ + G RK+++GGL P + + L N+F +G+I E
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH 186
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP--HKTLGGRTIIVKLAD 240
+ YD T SRGFGFVT++T ++ + D H+ LG + + +K A+
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHE-LGDKQVEIKRAE 234
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 237 (88.5 bits), Expect = 8.6e-19, P = 8.6e-19
Identities = 54/178 (30%), Positives = 92/178 (51%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ + K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 254 (94.5 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G P +K+++GGLSP+ + E + +FG GEIE
Sbjct: 209 KEHKLDGKLIDPKRA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + K ++
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEP 231
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 254 (94.5 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G P +K+++GGLSP+ + E + +FG GEIE
Sbjct: 209 KEHKLDGKLIDPKRA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + K ++
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEP 231
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 254 (94.5 bits), Expect = 9.8e-19, P = 9.8e-19
Identities = 56/166 (33%), Positives = 88/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G P +K+++GGLSP+ + E + +FG GEIE
Sbjct: 209 KEHKLDGKLIDPKRA-KALKGKEP-P----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + K ++
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEP 231
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 256 (95.2 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 56/169 (33%), Positives = 91/169 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL W TT ++L F GE+ + V+ D TG+SRG+GF+T+K+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRK---LYIGGLSPEVTTEVLLNFFGRHGEI 190
L DG++ + A+P Q K +++GG+ + T E NFF + G +
Sbjct: 224 EHHL-DGKI---------IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRV 273
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ ++ DKDT RGFGFVTY+ A + + P+ T+ G+ + VK A
Sbjct: 274 LDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 236 (88.1 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/178 (29%), Positives = 92/178 (51%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 236 (88.1 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 53/173 (30%), Positives = 94/173 (54%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPD--LAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
A ++GR+ A S PD L +K+++GG+ + L ++FG++G+
Sbjct: 67 ARPHKVNGRVVEPKRAVSRED--SQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKT 124
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHK 243
E + D+ + + RGF FVT+ ++ K V + T+ G V+ A +++
Sbjct: 125 EVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKAPSNQ 177
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 257 (95.5 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 59/169 (34%), Positives = 97/169 (57%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL W TT ++L F GE++E V+ D ATG+SRG+GF+T+K ++ + +
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVM-V 169
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVP-DLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEI 190
+DG++ + A+P D ++ K+++GG+S E T + FF + G +
Sbjct: 170 KEHYLDGKI---------IDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRV 220
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ ++ DKDT RGFGFVT+ + A + A+ P + LG +TI VK A
Sbjct: 221 IDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSRPLEILG-KTIEVKKA 268
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 235 (87.8 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 93 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 152
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 153 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 199
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 235 (87.8 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 54/174 (31%), Positives = 88/174 (50%)
Query: 67 SADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
S +P RKL + GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E
Sbjct: 1 SKEPEQLRKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 60
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
+A+ A +DGR+ A V L +K+++GG+ + L ++F
Sbjct: 61 EVDAAVCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE 120
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++G+IE V D + + RGF FVT+ + K VD + + G VK A
Sbjct: 121 KYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKA 174
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 256 (95.2 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 55/162 (33%), Positives = 87/162 (53%)
Query: 2 EDVKKRKMEDDNILINGQDFNXXXXXXQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAEE 61
+D +K++ +D + DF ++ ++ LL SK +LV+L+ + + +
Sbjct: 341 QDKEKKRKKDKKQTKSDSDFEHD----KEDIKQLLVAYSKEELVNLIYKTAEKGSRLISA 396
Query: 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
I A D R +FVRG W+TT E L AF +GEIEE +V+ DK TG+ +GYGF+ +
Sbjct: 397 ILESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQ 163
K + + AL+ P K + R+ VCNLA E D+A+
Sbjct: 457 KTRKGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQDMAE 498
Score = 180 (68.4 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
SA D+AQR +++ G + T E L F +GEIEE SV DKDT +G+GFV +KT
Sbjct: 400 SADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTR 459
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ A++A+ P K + R ++ LA GK + Q
Sbjct: 460 KGAREALKRPEKRMYNRIVVCNLASEKPGKAGKEQ 494
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 241 (89.9 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 58/193 (30%), Positives = 99/193 (51%)
Query: 59 AEEIKSVASADPVHR-KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYG 117
AE K AS + K+F+ GL+W+TT + L F G++ + + D TG+SRG+G
Sbjct: 61 AEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 120
Query: 118 FITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTT 177
F+ +K ES + ++G++ A + + V +K+++GGLSP+
Sbjct: 121 FVLFKESESVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPE 174
Query: 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVK 237
E + +FG GE+E + D TN+ RGF F+T+K E KK ++ + +G +K
Sbjct: 175 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 234
Query: 238 LADTHKGKPPQTQ 250
+A + + Q Q
Sbjct: 235 VAMSKEQYQQQQQ 247
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 245 (91.3 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 204 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 263
Query: 246 PPQTQ 250
Q Q
Sbjct: 264 QQQQQ 268
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 245 (91.3 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 204 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 263
Query: 246 PPQTQ 250
Q Q
Sbjct: 264 QQQQQ 268
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 245 (91.3 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 204 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 263
Query: 246 PPQTQ 250
Q Q
Sbjct: 264 QQQQQ 268
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 245 (91.3 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 56/185 (30%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 204 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 263
Query: 246 PPQTQ 250
Q Q
Sbjct: 264 QQQQQ 268
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 232 (86.7 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F+ G + + V+ D T +SRG+GF+TY E +A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYS-CEEVDAAMC 71
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 72 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGKIET 131
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 132 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 178
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 239 (89.2 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 230 (86.0 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
+A RKLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 49 AAQAALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 108
Query: 127 TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR 186
+ L + +DGR N+ + S + K+++GG+ L +F +
Sbjct: 109 VGTVLASRPHTLDGR----NIDPKQKGPRS--DNSKSNKIFVGGIPHNCGETELREYFKK 162
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+ K
Sbjct: 163 FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 221
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 237 (88.5 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 55/180 (30%), Positives = 91/180 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
P +D + +A A P + R K+++GGLS E + +F + G++E
Sbjct: 82 PHHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 137
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQ 250
+ + +DK TN RGFGFVT++ + +K + + + + K A + PP T+
Sbjct: 138 DAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTR 197
Score = 156 (60.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGF 209
+G SG + K++IGGLS + + + L ++F + GEI E V D T SRGFGF
Sbjct: 7 QGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66
Query: 210 VTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
VT+ + K + PH L +TI K+A + +P
Sbjct: 67 VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQP 103
Score = 121 (47.7 bits), Expect = 0.00036, P = 0.00036
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 242 (90.2 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 55/185 (29%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F G++ + + D TG+SRG+GF+ +K E
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 201
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 202 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 261
Query: 246 PPQTQ 250
Q Q
Sbjct: 262 QQQQQ 266
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 242 (90.2 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 55/185 (29%), Positives = 96/185 (51%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F G++ + + D TG+SRG+GF+ +K E
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 201
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A + +
Sbjct: 202 GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY 261
Query: 246 PPQTQ 250
Q Q
Sbjct: 262 QQQQQ 266
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 229 (85.7 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 139
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 140 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 186
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 243 (90.6 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 53/158 (33%), Positives = 84/158 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K L
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR + + + P +K+++GGL+PE T E + +FG GEIE
Sbjct: 156 KEHRLDGR----QIDPKKAMAMKKEP---VKKIFVGGLNPETTEERIREYFGAFGEIETI 208
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+ D +N+ RGF F+T+K EA KK ++ + + G
Sbjct: 209 ELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSG 246
Score = 132 (51.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K K +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K +P
Sbjct: 156 KEHRLDGRQIDPKKAMAMKKEP 177
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 244 (91.0 bits), Expect = 8.8e-18, P = 8.8e-18
Identities = 60/197 (30%), Positives = 99/197 (50%)
Query: 59 AEEIKSVASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
A ++ S + D H K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+
Sbjct: 5 ASQVTSGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGF 64
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPE 174
GFIT+ + S L P +D + +A A P + R K+++GGLS
Sbjct: 65 GFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSAS 120
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI 234
E + +F + G++E+ + +DK TN RGFGFVT++ + +K + + + +
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMV 180
Query: 235 IVKLADTHKGK-PPQTQ 250
K A + PP T+
Sbjct: 181 ECKKAQPKEVMFPPGTR 197
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 240 (89.5 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 132
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 133 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 226 (84.6 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 52/167 (31%), Positives = 85/167 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+RGL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 17 KMFIRGLSWDTSKKDL-----TFGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLEL 71
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+D L A + P +K+++GGLSP+ E + + G GEIE
Sbjct: 72 KEHKLDSMLIDPKRA----KALKEPP----KKVFVGGLSPDTYEEQIKEYLGAFGEIENI 123
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+ D TNE RGF F+TY + KK +++ + +G +K+A+
Sbjct: 124 ELPMDTKTNERRGFCFITYTDEKPVKKLLENRYHQIGSGKCEIKVAE 170
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 239 (89.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 64 SVASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+++S+D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 9 NLSSSDSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTF 68
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEV 179
L +D + +A A P L R K+++GGLS T E
Sbjct: 69 VDQAGVDKVLAQTRHELDSKTIDPKVAFPR----RAQPKLVTRTKKIFVGGLSVNTTIED 124
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ +F + G++++ + +DK TN RGFGFVT++ + +K + + + + K A
Sbjct: 125 VKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 184
Query: 240 DTHKGKPP 247
+ P
Sbjct: 185 QPKEVMSP 192
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 241 (89.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 52/166 (31%), Positives = 88/166 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ E+L F +G+I E V+ D T +SRG+GF+T+ S L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+ +DG+ +A + V +K+++GGLS T E + ++F + G IE+
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPKMVT--RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDA 147
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ +DK TN RGFGFVT+++ + K + + + + K A
Sbjct: 148 MLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKA 193
Score = 150 (57.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
S VP+ K++IGGLS + + E L ++FGR+G+I E V D T SRGFGFVT+
Sbjct: 22 SEVPN-DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDP 80
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
+ K + L G+ + K+A + P
Sbjct: 81 NSVDKVLTQGTHELDGKKVDPKVAFPRRAHP 111
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 241 (89.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 53/167 (31%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L +F ++G+IE
Sbjct: 93 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIET 152
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 153 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 199
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 237 (88.5 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 55/180 (30%), Positives = 91/180 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
P +D + +A A P + R K+++GGLS E + +F + G++E
Sbjct: 82 PHHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 137
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQ 250
+ + +DK TN RGFGFVT++ + +K + + + + K A + PP T+
Sbjct: 138 DAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTR 197
Score = 155 (59.6 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 147 LACEGLSGVSAVPDLAQR---KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNE 203
+ G G S + +Q K++IGGLS + + + L ++F + GEI E V D T
Sbjct: 1 MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 204 SRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
SRGFGFVT+ + K + PH L +TI K+A + +P
Sbjct: 61 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQP 103
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 224 (83.9 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 67 SADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
S +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E
Sbjct: 3 SMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 62
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
+A+ A +DGR+ A + K+++G + + L ++FG
Sbjct: 63 EVDAAMNARPHKVDGRVVEPKRAVS-IEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDYFG 121
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++G+ E + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 122 QYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGHNCEVRKA 175
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 240 (89.5 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 240 (89.5 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 240 (89.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 240 (89.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 240 (89.5 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 239 (89.2 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 239 (89.2 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 239 (89.2 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 232 (86.7 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 54/179 (30%), Positives = 90/179 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
+D + +A A P + R K+++GGLS E + +F + G++E+
Sbjct: 61 HHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVED 116
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQ 250
+ +DK TN RGFGFVT++ + +K + + + + K A + PP T+
Sbjct: 117 AMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTR 175
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 148 IHFHEINNKMVECKKA 163
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 237 (88.5 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 65 VASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 123 HMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVL 180
L +D + +A A P + R K+++GGLS T E +
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
++F + G++++ + +DK TN RGFGFVT+++ + +K + + + + K A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 241 THKGKPP 247
+ P
Sbjct: 186 PKEVMSP 192
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 237 (88.5 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 65 VASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 123 HMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVL 180
L +D + +A A P + R K+++GGLS T E +
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
++F + G++++ + +DK TN RGFGFVT+++ + +K + + + + K A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 241 THKGKPP 247
+ P
Sbjct: 186 PKEVMSP 192
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 237 (88.5 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 56/187 (29%), Positives = 94/187 (50%)
Query: 65 VASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 123 HMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVL 180
L +D + +A A P + R K+++GGLS T E +
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
++F + G++++ + +DK TN RGFGFVT+++ + +K + + + + K A
Sbjct: 126 KHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 241 THKGKPP 247
+ P
Sbjct: 186 PKEVMSP 192
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 239 (89.2 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 55/180 (30%), Positives = 91/180 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
P +D + +A A P + R K+++GGLS E + +F + G++E
Sbjct: 82 PHHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 137
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQ 250
+ + +DK TN RGFGFVT++ + +K + + + + K A + PP T+
Sbjct: 138 DAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTR 197
Score = 160 (61.4 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 36/100 (36%), Positives = 54/100 (54%)
Query: 150 EGLSGVSAVPDLAQR---KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206
+G S P+ +Q K++IGGLS + + + L ++F + GEI E V D T SRG
Sbjct: 4 DGSQATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 207 FGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
FGFVT+ + K + PH L +TI K+A + +P
Sbjct: 64 FGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQP 103
Score = 121 (47.7 bits), Expect = 0.00054, P = 0.00054
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 221 (82.9 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 53/180 (29%), Positives = 91/180 (50%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
+ AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 SGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
+ L + +DGR G + + K+++GG+ L +F
Sbjct: 63 CVGTVLASRPHTLDGR---------NQKGPRS-DNSKSNKIFVGGIPHNCGETELREYFK 112
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
+ G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+ K
Sbjct: 113 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 172
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 239 (89.2 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 51/167 (30%), Positives = 89/167 (53%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L A F G + + V+ D T +SRG+GF+TY + +A+
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR A +K+++GG+ + E L +FG+ G+I+E
Sbjct: 98 ARPHKVDGRAVEPKRAVSREDSSKPGAHSTVKKMFVGGIKEDTDEEHLREYFGQFGKIDE 157
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++ +K++++ RGF F+T+ +A + V + T+ G V+ A
Sbjct: 158 VNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKA 204
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 236 (88.1 bits), Expect = 4.6e-17, P = 4.6e-17
Identities = 56/187 (29%), Positives = 93/187 (49%)
Query: 65 VASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 123 HMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVL 180
L +D + +A A P + R K+++GGLS T E +
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+F + G++++ + +DK TN RGFGFVT+++ + +K + + + + K A
Sbjct: 126 KQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 241 THKGKPP 247
+ P
Sbjct: 186 PKEVMSP 192
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 235 (87.8 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 51/167 (30%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V H T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 239 (89.2 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 53/175 (30%), Positives = 92/175 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL+W TT E L F G+I + V+ + +G+SRG+GF+T+ + L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR + C + + K+++GGL VT L FF R+G++ E
Sbjct: 68 GPHTLDGR-TIDPKPCNPRT-LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+ YD++ +SRGFGF++++ + + ++ + L G+ + +K A+ G Q
Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQ 180
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 242 (90.2 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 66/242 (27%), Positives = 111/242 (45%)
Query: 2 EDVKKRKMEDDNILINGQDFNXXXXXXQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAEE 61
ED K K ++ N L +S+ Q S Q EE
Sbjct: 89 EDTKNEKKQESATSANANANASSAGPSGLPWEQLQQTMSQFQQPSSQSPPQQQVTQTKEE 148
Query: 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+S A K+F+ GL W+TT + L F +G + + ++ D ATG+SRG+GF+++
Sbjct: 149 -RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVP-DLAQR--KLYIGGLSPEVTTE 178
+ S ++ ++DG++ + A+P D + K+++GG+ P+V +
Sbjct: 208 EKPSSVDEVVKT-QHILDGKV---------IDPKRAIPRDEQDKTGKIFVGGIGPDVRPK 257
Query: 179 VLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238
FF + G I + + DKDT +SRGFGFVTY + +A + + R I +K
Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 317
Query: 239 AD 240
A+
Sbjct: 318 AE 319
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 227 (85.0 bits), Expect = 6.1e-17, P = 6.1e-17
Identities = 56/169 (33%), Positives = 88/169 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL TT++ L + F G + + V+ + +SR +GF+TY E +A+ A
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQ-RKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
++DG+ A LA+ +K+++GGL ++ + L FF + G IE+
Sbjct: 69 RPHVVDGKNVEVKRAV-AREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEK 127
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241
V DKDT + RGFGFV ++ ++A KAV + G + VK A T
Sbjct: 128 SEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKALT 176
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 235 (87.8 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 57/172 (33%), Positives = 84/172 (48%)
Query: 69 DPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMEST 127
+P H RKLF+ GL + TT E L A F G I + V+ D T +SRG+GFITY H
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 128 QSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRH 187
A ++ IDGR+ A S +KL++G L + + + ++F
Sbjct: 86 DEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHF 145
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
G I + ++ DK+T + RGF FV + + K V L G+ + VK A
Sbjct: 146 GNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 235 (87.8 bits), Expect = 9.2e-17, P = 9.2e-17
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 155 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 201
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 231 (86.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 217 (81.4 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 58/177 (32%), Positives = 88/177 (49%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P KLFV L ++ S+ L F G +E VIY++ T +SRG+GF+T +E +
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 130 ALRAPSKL-IDGRLAVCNLACEGLSGVSAVPDL--AQRKLYIGGLSPEVTTEVLLNFFGR 186
A+ + ++GR N A S P + A ++Y+G L +V + L F
Sbjct: 170 AVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKT---VEAAKKAVDDPHKTLGGRTIIVKLAD 240
HG++ + V D++T SRGFGFV V A A+D + L GR I V +A+
Sbjct: 230 HGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG--QNLEGRAIKVNVAE 284
Score = 161 (61.7 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 138 IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAY 197
I G + + E GV + KL++G L +V ++ L F + G +E V Y
Sbjct: 87 IGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 146
Query: 198 DKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLADTHKGKPPQTQ 250
++DT++SRGFGFVT TVE A+KAV+ + + GR + V A +G P+ Q
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA-APRGSRPERQ 199
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 230 (86.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 52/176 (29%), Positives = 88/176 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+ L
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
+D + +A A P + R K+++GGLS T E + +F + G+++
Sbjct: 61 SRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVD 116
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
+ + +DK TN RGFGFVT+++ + +K + + + + K A + P
Sbjct: 117 DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP 172
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NTT E + F G++++ +++DK T + RG+GF+T++ + +
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 149 IHFHEINNKMVECKKA 164
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 226 (84.6 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTD-CVVMDPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A + +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 82 ARPQKMDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 141
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T G V+ A
Sbjct: 142 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKA 188
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 230 (86.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 77 ARPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 136
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 137 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 183
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 229 (85.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 215 (80.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 48/166 (28%), Positives = 84/166 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL++ TT E+L + F G + + V+ D T + RG+GF+TY +E +A+ A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR+ A L +K+++G + + L +F ++G+IE
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVI 127
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 128 EIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 214 (80.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 52/176 (29%), Positives = 88/176 (50%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL + TT E+L + F G + E V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A +DGR+ A S K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPERAVSREDSHSLTV-----KIFVGGIKEDTEEHYLR 117
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVK 237
++ ++G+IE + D+ + + RGF FVT+ ++ K V + T+ + K
Sbjct: 118 DYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIRKYHTVNDHNCVRK 173
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 229 (85.7 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 80 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 139
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 140 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 186
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 229 (85.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 229 (85.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 229 (85.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 228 (85.3 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 55/187 (29%), Positives = 92/187 (49%)
Query: 65 VASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 123 HMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVL 180
L +D + +A A P + R K+++GGLS T E +
Sbjct: 70 DQAGVDKVLAQSRHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDV 125
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+F + ++++ + +DK TN RGFGFVT+++ + +K + + + + K A
Sbjct: 126 KQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQ 185
Query: 241 THKGKPP 247
+ P
Sbjct: 186 PKEVMSP 192
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 235 (87.8 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 52/185 (28%), Positives = 93/185 (50%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
+ +DP KLFV GL+W T+S+ L F + G + + ++ D T +SRG+GFIT++
Sbjct: 196 SGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPC 255
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
+ + L+ P +DG+ A A +K+++GG+S + + E + +F
Sbjct: 256 TVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKT---KKIFVGGVSQDTSAEEVKAYFS 312
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
+ G +EE + D+ T RGFGFVT++ + + + T+ + + K A +
Sbjct: 313 QFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAV 372
Query: 246 PPQTQ 250
P Q
Sbjct: 373 TPAAQ 377
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 221 (82.9 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 51/179 (28%), Positives = 90/179 (50%)
Query: 62 IKSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFIT 120
++S S +P RKLF+ GL++ TT ++L A F G++ + V+ D A +SRG+GF+T
Sbjct: 1 MESRDSKEPEQLRKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVT 60
Query: 121 YKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVL 180
Y + +A+ A +DGR+ A L +K+++GG+ + +
Sbjct: 61 YSSVSEVDAAMTARPHKVDGRVVEPKRAVSREDSNKPGAHLTVKKIFVGGIKEDTEEYHI 120
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+F +G+IE + ++ T + RGF FVT+ + K V + T+ V+ A
Sbjct: 121 REYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKA 179
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 210 (79.0 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 43/83 (51%), Positives = 54/83 (65%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GLAW T SETL F +GEI E VI DK TG+S+GYGF+T++ E+ +
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A P+ +IDGR A CNLA G
Sbjct: 80 RACADPTPIIDGRRANCNLASLG 102
Score = 169 (64.5 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 35/88 (39%), Positives = 52/88 (59%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL+ E +E L F ++GEI E V DK+T S+G+GFVT++ EAA+
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPP 247
+A DP + GR LA + +PP
Sbjct: 80 RACADPTPIIDGRRANCNLASLGRPRPP 107
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 225 (84.3 bits), Expect = 6.8e-16, P = 6.8e-16
Identities = 53/181 (29%), Positives = 93/181 (51%)
Query: 59 AEEIKSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYG 117
AE AS +P + RK+FV GL NTT + + + GEI + V+ D T +SRG+G
Sbjct: 8 AENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFG 67
Query: 118 FITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTT 177
F+T+ +A++ +IDG+ A + +++ ++LY+ G+ + T
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTE 127
Query: 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV-DDPHKTLGGRTIIV 236
++L +F ++G + + + DK T + RGFGFVT+ ++ + V H G R +
Sbjct: 128 DMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
Query: 237 K 237
K
Sbjct: 188 K 188
Score = 137 (53.3 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206
+ E SG +++ RK+++GGL+ T +++ F+ + GEI + V D T SRG
Sbjct: 6 IKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRG 65
Query: 207 FGFVTY--KT-VEAAKKAVDDPHKTLGGRTIIVKLA 239
FGFVT+ KT V+AA K PH + G+T+ K A
Sbjct: 66 FGFVTFSGKTEVDAAMK--QRPH-IIDGKTVDPKRA 98
Score = 118 (46.6 bits), Expect = 0.00086, P = 0.00086
Identities = 26/97 (26%), Positives = 54/97 (55%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++ + K+ + ++ ++L+V G+ + T + L F +G + + +I DKAT K RG+
Sbjct: 98 AVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLS 153
GF+T+ +S + S +++G C++ +GLS
Sbjct: 158 GFVTFDDHDSVDQCVLQKSHMVNGHR--CDVR-KGLS 191
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 218 (81.8 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 52/175 (29%), Positives = 83/175 (47%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL T+ L F G + + V+ + T +SR +GF+TY ++E +A+ A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKA 127
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA----DTHKG 244
+ DK + + RGFGFV +++ +AA KA + G + VK A D H G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAG 182
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 209 (78.6 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 52/167 (31%), Positives = 87/167 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+ A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV-LLNFFGRHGEIEE 192
+DGR+ A L +K+++G E T E L ++F ++G+IE
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVG----EDTEEHHLRDYFEQYGKIEV 123
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 124 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 170
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 224 (83.9 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 227 (85.0 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 49/167 (29%), Positives = 84/167 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L A F G + + V+ D T +SRG+GF+TY ++ +++
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGRL A +K+++GG+ + L ++F + G+IE
Sbjct: 93 ARPHKVDGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEV 152
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D T RGF FVT+ ++ + V + T+ G V+ A
Sbjct: 153 VEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKA 199
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 217 (81.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 55/170 (32%), Positives = 91/170 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL TT + L F +G++ + V+ ++ +SR +GF+TY + SA+ A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPD-LAQ-RKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
++DG A + P+ LA+ +K++IGGL ++ + L + F + G +E
Sbjct: 71 RPHILDGNNVELKRAVARED--AGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVE 128
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241
+ V DK+T + RGFGFV ++ ++A KAV + G + VK A T
Sbjct: 129 KAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHKVEVKKALT 178
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 225 (84.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/117 (35%), Positives = 72/117 (61%)
Query: 29 QDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSET 88
++ +++LL+ SK +L++L+ + + + + A D R +FVRGL W+TT E
Sbjct: 119 KEDIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHEN 178
Query: 89 LCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145
L AAF V+GEI E +V+ DK TG+++G+GF+ +K + ++AL+ P K + R C
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSC 235
Score = 165 (63.1 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
SA D +QR +++ GL + T E L F +GEI E SV DKDT ++GFGFV +KT
Sbjct: 155 SADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTR 214
Query: 216 EAAKKAVDDPHKTLGGRTI-IVKLADTHKGKPPQTQ 250
+ A+ A+ +P K + RT+ + + GKP + Q
Sbjct: 215 KGARAALKNPEKRMYNRTVSCLPARPFNSGKPREQQ 250
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 226 (84.6 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 56/186 (30%), Positives = 92/186 (49%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL F +GE+ + ++ DK+T +SRG+GF+ +K ++ L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 134 PSKLIDGRLA---VCN---------LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+DGR C +G G S +K+++GG+ L
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKG-SKSDSNKSKKIFVGGIPHNCGEAELR 130
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241
++F R G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+
Sbjct: 131 DYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKKAEP 190
Query: 242 HKGKPP 247
K P
Sbjct: 191 RDSKAP 196
Score = 158 (60.7 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 35/85 (41%), Positives = 49/85 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L N+F ++GE+ + + DK TN+SRGFGFV +K + +D
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH L GR I K T +G P+
Sbjct: 72 KPHN-LDGRNIDPKPC-TPRGMQPE 94
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 218 (81.8 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL T+ L F G + + V+ + T +SR +GF+TY ++E +A+ A
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA----DTHKG 244
+ DK + + RGFGFV ++ +AA KA + G + VK A D H G
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG 187
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 218 (81.8 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL T+ L F G + + V+ + T +SR +GF+TY ++E +A+ A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA----DTHKG 244
+ DK + + RGFGFV ++ +AA KA + G + VK A D H G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG 182
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 223 (83.6 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 48/167 (28%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+++
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGF T+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 218 (81.8 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 56/215 (26%), Positives = 98/215 (45%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ L++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKEPEQLRKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A + ++GR+ A L +K+++GG+ E T L
Sbjct: 63 ATVEEVDAAMNARPQKVNGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK-EDTEHHLR 121
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA-D 240
++F ++G+ E + D+ + RGF FVT+ ++ K V + T+ G ++ D
Sbjct: 122 DYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETRVKQD 181
Query: 241 THKGKPPQTQXXXXXXXXXXXXXXXYPQAGKAHAN 275
Q Y G+ + N
Sbjct: 182 MASASSSQRGRSGSGNFGYSGGSRGYGSGGQGYGN 216
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 218 (81.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 52/175 (29%), Positives = 82/175 (46%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL T+ L F G + + V+ + T +SR +GF+TY ++E +A+ A
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 73 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 132
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA----DTHKG 244
+ DK + + RGFGFV ++ +AA KA + G + VK A D H G
Sbjct: 133 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHSG 187
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 221 (82.9 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 52/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLFV GL+W TT + L F +GEIE V D TG+SRG+ FI + + E+
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +I+ + V + G K+++GGL+ E++ E + +FG+ G I E
Sbjct: 116 ADEHIINSK-KVDPKKAKARHG----------KIFVGGLTTEISDEEIKTYFGQFGNIVE 164
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ +DK ++ +GF F+T+ + + + P + + G+ + VK A
Sbjct: 165 VEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA 211
Score = 146 (56.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 38/107 (35%), Positives = 53/107 (49%)
Query: 140 GRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK 199
G N + + S S D RKL++GGLS E T + L + FG++GEIE +V D
Sbjct: 33 GAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDP 91
Query: 200 DTNESRGFGFVTYKTVEAAKK-AVDDPHKTLGGRTIIVKLADTHKGK 245
T SRGF F+ + EA K + D H + + + K A GK
Sbjct: 92 QTGRSRGFAFIVFTNTEAIDKVSAADEH-IINSKKVDPKKAKARHGK 137
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 205 (77.2 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 43/85 (50%), Positives = 55/85 (64%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GLAW T SETL F +G+I E VI DK TG+S+GYGF+T++ E+ +
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 129 SALRAPSKLIDGRLAVCNLACEGLS 153
A P+ +IDGR A CNLA G S
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRS 104
Score = 168 (64.2 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL+ E +E L F ++G+I E V DK+T S+G+GFVT++ EAA+
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPP 247
+A DP + GR LA + +PP
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPP 107
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 205 (77.2 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 50/166 (30%), Positives = 82/166 (49%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
L + GL++ TT ++L G + + V+ D T SRG+GF+TY +E +A+ A
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
P K +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 61 PHK-VDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 119
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V H + VK A
Sbjct: 120 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKA 165
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 181 (68.8 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 41/96 (42%), Positives = 53/96 (55%)
Query: 56 PSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRG 115
PS A + D K+FV GL ++TT +L F G+IEE VI D+ TGKSRG
Sbjct: 15 PSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 74
Query: 116 YGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
YGF+T + A + P+ +IDGR A NLA G
Sbjct: 75 YGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLG 110
Score = 144 (55.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 88 RACKDPNPIIDGRKANVNLA--YLGAKPRS 115
Score = 48 (22.0 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 266 YPQAGKAHANTPPVGYSYPQNV 287
YP A A T VGY YP V
Sbjct: 188 YPYAASPAAATSFVGYGYPAAV 209
Score = 40 (19.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 266 YPQAGKAHANTPPVGYS-YP 284
Y A A+A PP Y YP
Sbjct: 170 YTPASPAYAQYPPATYDQYP 189
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 214 (80.4 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL T+ L F G + + V+ + T +SR +GF+TY ++E +A+ A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ DK + + RGFGFV ++ +AA KA + G + VK A
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 217 (81.4 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 49/167 (29%), Positives = 85/167 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L ++ GE+ + V+ D A+ +SRG GF+T+ + +A+
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L +F ++G+I+
Sbjct: 69 ARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDA 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + RGFGFVT+ + K V + + G V+ A
Sbjct: 129 IEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 216 (81.1 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 51/178 (28%), Positives = 89/178 (50%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + P +KLF+ G ++ TT E+L + F+ G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E A+ A +DGR+ L +K++ GG+ + L
Sbjct: 63 TAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 223 (83.6 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 55/178 (30%), Positives = 84/178 (47%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ G++W+T E L F GE+ E ++ D+ TG++RG+GF+ + + +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 134 PSKLIDGRLAVCNLAC----------EGLSGVSAVPDLA--QRKLYIGGLSPEVTTEVLL 181
IDGRL A S + P RK+++GGL VT
Sbjct: 67 KHN-IDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+F + G + V YD +T RGFGF+TY + EA +K + L G+ + VK A
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 220 (82.5 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 57/192 (29%), Positives = 96/192 (50%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP---------DLAQ-RKLYIGGLSP 173
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWKGPRSDSSKSNKIFVGGIPH 121
Query: 174 EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRT 233
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 181
Query: 234 IIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 VEVKRAEPRDSK 193
Score = 146 (56.5 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 220 (82.5 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 58/183 (31%), Positives = 91/183 (49%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY------------ 121
KLFV G++W T + L F +GE+ + V+ DK TG+ RG+GF+ +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 122 KHMESTQSA--LRAPSK---LIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVT 176
KH T+ RA S+ + GR NL SG A +K+++GGL P +T
Sbjct: 67 KHSIDTREVDVKRAMSREEQQVSGRTG--NLNTSRSSGGDAYNKT--KKIFVGGLPPTLT 122
Query: 177 TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIV 236
E +F +G + + ++ YD+ TN RGFGFV++ + +A + L G+ + V
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEV 182
Query: 237 KLA 239
K A
Sbjct: 183 KRA 185
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 220 (82.5 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 51/171 (29%), Positives = 87/171 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GLA TTS F +GEI + ++ D+ TG+ RG+GF+TY ++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+I ++ + G +S+ D +K+++GG+ V + FF + GE++E
Sbjct: 103 NHIIIGKQVEIKRTIPRG--SMSS-NDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243
+ D T SRGFGFVTY++ + + ++ L G + +K A+ K
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 220 (82.5 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 56/201 (27%), Positives = 100/201 (49%)
Query: 51 LGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT 110
+GS+ S + +S A P K+F+ GL +TT+ F +GEI + ++ D+ T
Sbjct: 1 MGSR--SRNDNFQSGDGASP--GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHT 56
Query: 111 GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGG 170
G+ RG+GFIT+ + + +I+G+ +G + D+ +K+++GG
Sbjct: 57 GQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGG 115
Query: 171 LSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229
+ VT + L +FF ++G + E V D +TN SRGFGFV + + E + + + +
Sbjct: 116 IPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
Query: 230 GGRTIIVKLADTHKG---KPP 247
+ +K A+ K PP
Sbjct: 176 ADTQVEIKKAEPKKSLNRSPP 196
Score = 38 (18.4 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 273 HANTPPVGYS 282
+ N PP+GYS
Sbjct: 272 YRNEPPLGYS 281
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 218 (81.8 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 55/167 (32%), Positives = 80/167 (47%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL + TT + L A F G I + V+ D T +SRG+GFITY +A
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR A S +KL++GGL + E L +F G+I
Sbjct: 84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVS 143
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++ DKDT + RGF F+ + + K + ++ +T+ VK A
Sbjct: 144 VNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA 190
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 181 (68.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 41/96 (42%), Positives = 53/96 (55%)
Query: 56 PSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRG 115
PS A + D K+FV GL ++TT +L F G+IEE VI D+ TGKSRG
Sbjct: 15 PSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 74
Query: 116 YGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
YGF+T + A + P+ +IDGR A NLA G
Sbjct: 75 YGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLG 110
Score = 144 (55.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 88 RACKDPNPIIDGRKANVNLA--YLGAKPRS 115
Score = 43 (20.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 266 YPQAGKAHANTPPVGYSYP 284
YP A T VGY YP
Sbjct: 188 YPYAASPATATSFVGYGYP 206
Score = 40 (19.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 266 YPQAGKAHANTPPVGYS-YP 284
Y A A+A PP Y YP
Sbjct: 170 YTPASPAYAQYPPATYDQYP 189
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 218 (81.8 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 57/193 (29%), Positives = 96/193 (49%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLS 172
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIP 121
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR 232
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 233 TIIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 146 (56.5 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 218 (81.8 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 57/193 (29%), Positives = 96/193 (49%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 AGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLS 172
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIP 121
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR 232
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 233 TIIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 146 (56.5 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 198 (74.8 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 61/202 (30%), Positives = 103/202 (50%)
Query: 57 SIAEEIKSVASADP---VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKS 113
++ E + A+ DP R++++ + T+E L HG +E+ V+YDK +G+S
Sbjct: 57 AVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRS 116
Query: 114 RGYGFITYKHMESTQSAL-RAPSKLIDGRLAVCNLACEGLSGVSAVPDLA--QR------ 164
R +GF T K +E + + + ++GR N+ E +++ PDL+ Q
Sbjct: 117 RRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNIT-E--KPIASSPDLSVLQSEDSAFV 173
Query: 165 ----KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT---VEA 217
K+Y+G L+ VT E+L N F G++ V+ T++S GFGFVT+ + VEA
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 218 AKKAVDDPHKTLGGRTIIVKLA 239
A A+++ L G+ I V A
Sbjct: 234 AIVALNN--SLLEGQKIRVNKA 253
Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
A R++YIG + VT E L HG +E+ V YDK + SR FGF T K+VE A
Sbjct: 74 AARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAV 133
Query: 222 VDDPH-KTLGGRTIIVKLAD 240
V+ + T+ GR I V + +
Sbjct: 134 VEKLNGNTVEGREIKVNITE 153
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 209 (78.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 52/167 (31%), Positives = 89/167 (53%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+KLF+ GL++ TT E+L + F G + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A + L +K+++GG+ E T + L ++F +G+IE
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSQTLDAHLTVKKIFVGGIK-ENTEDHLRDYF-EYGKIEV 130
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K + H T+ G V+ A
Sbjct: 131 IEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYH-TVNGHNCEVRKA 176
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 211 (79.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 47/159 (29%), Positives = 82/159 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL+ TT E+L ++ GE+ + VI A+ KSRG+GF+T+ + +A+
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L +F ++G+I+
Sbjct: 81 ARPHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDA 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+ D+ + + RGFGFVT+ + K + + + G
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAING 179
Score = 132 (51.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L N++ + GE+ + V + +SRGFGFVT+ +V A+
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 224 D-PHKTLGGRTIIVKLA 239
PH ++ GR + K A
Sbjct: 81 ARPH-SIDGRVVDPKRA 96
Score = 45 (20.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 483 DELLLENYHVLCNYGVARNKIGKIL--KEAREV 513
D+++L+ YH + + R ++GK L +E +E+
Sbjct: 167 DKIMLQKYHAINGH---RAEVGKALSRQEMKEI 196
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 212 (79.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 50/166 (30%), Positives = 79/166 (47%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL TT L F +G + + V+ + T +SR +GF+TY +E +A+ A
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAA 88
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG A +KL++GGL +V L+ F + G +E+
Sbjct: 89 SPHAVDGNSVELKRAVSREDSAKPGAHAKVKKLFVGGLKGDVGEGDLVQHFSQFGPVEKA 148
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ DK + + RGFGFV ++ +AA KA + G + VK A
Sbjct: 149 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 194
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 197 (74.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 63/193 (32%), Positives = 91/193 (47%)
Query: 60 EEIKSVASA--DP---VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSR 114
EE ASA DP V+ KL+ L +N S TL + E V+Y++ TG+SR
Sbjct: 67 EEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSR 126
Query: 115 GYGFITYKHMESTQSAL-RAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSP 173
G+ F+T ++E + GR N A + + + KL++G LS
Sbjct: 127 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSW 186
Query: 174 EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT---VEAAKKAVDDPHKTLG 230
VT+E L F G++ V +D DT SRG+GFV Y + +E A +++D L
Sbjct: 187 TVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFE--LE 244
Query: 231 GRTIIVKLADTHK 243
GR I V LA K
Sbjct: 245 GRAIRVNLAQGKK 257
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 217 (81.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 52/180 (28%), Positives = 90/180 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ G++W+T E L F +G++ E ++ D+ATG++RG+GFI + ++ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM- 65
Query: 134 PSKLIDGRLAVCNLAC---------EGLSGVSAVPDL-----AQRKLYIGGLSPEVTTEV 179
+IDGR A S + + + +K+++GGL +T E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
N+F + G I + V YD +T RGFGF+T+ + +A + + L G+ + VK A
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 206 (77.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D H K+FV GLAW T ++ + F GEI E +I DKATGKS+GYGF+T++ +S
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A+ P+ +IDGR A CN+A G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG 95
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 30/87 (34%), Positives = 52/87 (59%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL+ E T+ + +F + GEI E + DK T +S+G+GFVT++ ++A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKP 246
+AV DP+ + GR +A + +P
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRP 99
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 215 (80.7 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 54/185 (29%), Positives = 90/185 (48%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K + L +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 134 PSKLIDGRLAVCNLAC-------------EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVL 180
+DGR + C EG S + K+++GG+ L
Sbjct: 61 RPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETEL 119
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+F + G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 179
Query: 241 THKGK 245
K
Sbjct: 180 PRDSK 184
Score = 146 (56.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 61 RPH-TLDGRNIDPKPC-TPRGMQPE 83
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 196 (74.1 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 46/156 (29%), Positives = 76/156 (48%)
Query: 85 TSET-LCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLA 143
TSE+ L F G + + V+ + T +SR +GF+TY ++E +A+ A +DG
Sbjct: 18 TSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTV 77
Query: 144 VCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNE 203
A +KL++GGL +V L+ F + G +E+ + DK + +
Sbjct: 78 ELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGK 137
Query: 204 SRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
RGFGFV +++ +AA KA + G + VK A
Sbjct: 138 KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 216 (81.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 54/186 (29%), Positives = 91/186 (48%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K + L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 134 PSKLIDGRLAVCNLAC--EGLSGVSAVP------------DLAQRKLYIGGLSPEVTTEV 179
+DGR + C G+ + P + K+++GG+
Sbjct: 71 RPHTLDGR-NIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
L +F R G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A
Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 189
Query: 240 DTHKGK 245
+ K
Sbjct: 190 EPRDSK 195
Score = 38 (18.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 273 HANTPPVGYSY 283
+A PP GY Y
Sbjct: 283 YATPPPFGYGY 293
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 195 (73.7 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 46/104 (44%), Positives = 59/104 (56%)
Query: 49 SRLGSQYPSIAEEIKS-VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYD 107
SR S+ PS K D + K+FV GL ++TT +L F V GEIEE VI D
Sbjct: 4 SRSRSRSPSRGAGAKMHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITD 63
Query: 108 KATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
+ TGKSRGYGF+T + + A + P+ +IDGR A NLA G
Sbjct: 64 RQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 107
Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F GEIEE V D+ T +SRG+GFVT AA+
Sbjct: 25 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 84
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 85 RACKDPNPIIDGRKANVNLA--YLGAKPR 111
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 214 (80.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
+ AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 SGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLS 172
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR 232
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 233 TIIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 146 (56.5 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 214 (80.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
+ AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 SGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLS 172
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR 232
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 233 TIIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 146 (56.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 214 (80.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
+ AD + KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K
Sbjct: 4 SGADEIG-KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
Query: 126 STQSALRAPSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLS 172
+ L + +DGR + C G+ P D ++ K+++GG+
Sbjct: 63 CVGTVLASRPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR 232
L +F + G + E + YD + RGFGF+T++ ++ +AV+ + G+
Sbjct: 122 HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGK 181
Query: 233 TIIVKLADTHKGK 245
+ VK A+ K
Sbjct: 182 KVEVKRAEPRDSK 194
Score = 146 (56.5 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 71 RPH-TLDGRNIDPKPC-TPRGMQPE 93
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 212 (79.7 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 52/174 (29%), Positives = 86/174 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T SRG+GF+T +E +A+
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+ E
Sbjct: 96 ARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTE- 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
++ + E RGF FVT+ + K V H T+ G VK A + + P
Sbjct: 155 -TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQEMP 207
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 212 (79.7 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 52/174 (29%), Positives = 86/174 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T SRG+GF+T +E +A+
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+ E
Sbjct: 96 ARPHKVDGRVVEPKRAVSREDSVKPGAHLMVKKIFVGGIKEDTEEYNLRDYFEKYGKTE- 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
++ + E RGF FVT+ + K V H T+ G VK A + + P
Sbjct: 155 -TIEGRQAEWEKRGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRALSKQEMP 207
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 208 (78.3 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 49/166 (29%), Positives = 84/166 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M A+ A
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T G V+ A
Sbjct: 130 EIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKA 174
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 176 (67.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GL ++TT +L F G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 90 RACKDPNPIIDGRKANVNLAYLG 112
Score = 146 (56.5 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 90 RACKDPNPIIDGRKANVNLA--YLGAKPRS 117
Score = 43 (20.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 266 YPQAGKAHANTPPVGYSYPQNV 287
YP A VGYSYP V
Sbjct: 190 YPYAASPATAASFVGYSYPAAV 211
Score = 40 (19.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 266 YPQAGKAHANTPPVGYS-YP 284
Y A A+A PP Y YP
Sbjct: 172 YTPASPAYAQYPPATYDQYP 191
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 133 (51.9 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
++Y+G LS V L + F G++ E V YD+D+ S+GFGFVTY + + + A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQTQ 250
L GR I V A+ +PP+ Q
Sbjct: 265 LDGADLDGRQIRVSEAEA---RPPRRQ 288
Score = 126 (49.4 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+++V L+W L + F G++ E VIYD+ +G+S+G+GF+TY + Q+A+++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 134 PSKL-IDGR 141
+DGR
Sbjct: 265 LDGADLDGR 273
Score = 125 (49.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV L +N S L F G +E VIYDK TG+SRG+GF+T + ++A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 134 PSKL-IDGR 141
+ +DGR
Sbjct: 152 FNGYELDGR 160
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 210 (79.0 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 44/158 (27%), Positives = 83/158 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL TT ++L ++ G++ + V+ D + +SRG+GF+T+ + +A+ A
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG++ A LA +KL++GG+ + L ++F ++G+I+
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTI 141
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+ D+ + + RGFGFVT+ + K V + T+ G
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTING 179
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 175 (66.7 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 49/132 (37%), Positives = 64/132 (48%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G P A + D K+FV GL ++TT +L F G+IEE VI D+ TG
Sbjct: 13 GFSRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLS----------GVSAVPDL 161
KSRGYGF+T + + A + P+ IDGR A NLA G GV VP
Sbjct: 73 KSRGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQVPPT 132
Query: 162 AQRKLYIGGLSP 173
++ Y GL+P
Sbjct: 133 LIQRTY--GLTP 142
Score = 147 (56.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 90 RACKDPNPNIDGRKANVNLA--YLGAKPRS 117
Score = 43 (20.2 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 266 YPQAGKAHANTPPVGYSYPQNV 287
YP A VGYSYP V
Sbjct: 190 YPYAASPATAASFVGYSYPAAV 211
Score = 40 (19.1 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 266 YPQAGKAHANTPPVGYS-YP 284
Y A A+A PP Y YP
Sbjct: 172 YTPASPAYAQYPPATYDQYP 191
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 212 (79.7 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 54/185 (29%), Positives = 92/185 (49%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K + L +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 134 PSKLIDGRLAVCNLAC--EGLSGVSAVP----------DLAQ-RKLYIGGLSPEVTTEVL 180
+DGR + C G+ P D ++ K+++GG+ L
Sbjct: 61 RPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 119
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+F + G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+
Sbjct: 120 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 179
Query: 241 THKGK 245
K
Sbjct: 180 PRDSK 184
Score = 146 (56.5 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 225 -PHKTLGGRTIIVKLADTHKGKPPQ 248
PH TL GR I K T +G P+
Sbjct: 61 RPH-TLDGRNIDPKPC-TPRGMQPE 83
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 211 (79.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 49/181 (27%), Positives = 93/181 (51%)
Query: 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSA 130
+ RKL V G+ W+ S+ L G++E+ V+ D++TG+SRG+G++T+ E ++A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 131 LRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
L+ + R+ +A P ++++ + V+ + F R+GEI
Sbjct: 61 LKG-EHFLGNRILEVKVATP--KEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA----DTHKGKP 246
+ + D ++ + RG GF+T+ + ++ + ++D H LGG T+ V A D H +P
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHD-LGGTTVAVDRATPKEDDHPPRP 176
Query: 247 P 247
P
Sbjct: 177 P 177
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 210 (79.0 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFR-------VHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY E
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYS-CE 71
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
+A+ A +DGR+ A V L +K+++GG+ + L ++F
Sbjct: 72 EVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFE 131
Query: 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++G+IE V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 132 KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 185
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 209 (78.6 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 50/168 (29%), Positives = 89/168 (52%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ L+ TT E+L +R G + + +I D A+ KSR +GFIT+ M +A+ A
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 134 PSKLIDGRLAVCNLAC--EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
IDG++ + A E + A+ + +KL++GG++ ++ L ++F ++G+I
Sbjct: 82 RPHFIDGKMVMPKRAVPREDHGKLGAL--ITVKKLFVGGITEDMKEHHLRDYFEKYGKIN 139
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D + + RGFGF+T+ + K V + T+ G V+ A
Sbjct: 140 AIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHTINGHRAEVRKA 187
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 191 (72.3 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 51/124 (41%), Positives = 69/124 (55%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
V S D + K+FV GL ++T+ +TL F G+IEE VI D+ T KSRGYGF+T K
Sbjct: 27 VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDR 86
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFF 184
S + A + P+ +IDGR A NLA G + V LA L G + +TT++ F
Sbjct: 87 ASAERACKDPNPIIDGRKANVNLAYLGAKPRTNV-QLAA--LAAGQVQLPLTTQLQALFQ 143
Query: 185 GRHG 188
R G
Sbjct: 144 PRMG 147
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGL + + L +F + G+IEE V D++T +SRG+GFVT K +A++A D
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 225 PHKTLGGRTIIVKLADTHKGKPPQT 249
P+ + GR V LA + G P+T
Sbjct: 96 PNPIIDGRKANVNLA--YLGAKPRT 118
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 191 (72.3 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 51/124 (41%), Positives = 69/124 (55%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
V S D + K+FV GL ++T+ +TL F G+IEE VI D+ T KSRGYGF+T K
Sbjct: 27 VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDR 86
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFF 184
S + A + P+ +IDGR A NLA G + V LA L G + +TT++ F
Sbjct: 87 ASAERACKDPNPIIDGRKANVNLAYLGAKPRTNV-QLAA--LAAGQVQLPLTTQLQALFQ 143
Query: 185 GRHG 188
R G
Sbjct: 144 PRMG 147
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGL + + L +F + G+IEE V D++T +SRG+GFVT K +A++A D
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 225 PHKTLGGRTIIVKLADTHKGKPPQT 249
P+ + GR V LA + G P+T
Sbjct: 96 PNPIIDGRKANVNLA--YLGAKPRT 118
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 191 (72.3 bits), Expect = 7.3e-14, P = 7.3e-14
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V GEIEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 153 (58.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 36/93 (38%), Positives = 50/93 (53%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
S+ D K+++GGL T L +F GEIEE V D+ T +SRG+GFVT
Sbjct: 3 SSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
AA++A DP+ + GR V LA + G P+
Sbjct: 63 SAAERACKDPNPIIDGRKANVNLA--YLGAKPR 93
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 190 (71.9 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 51/145 (35%), Positives = 74/145 (51%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GLAW T +L F G+I E VI DK++G+S+GYGF+T+ E+ Q
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG 188
A P+ +IDGR A CNLA G+ + P ++GG +VT+ +F G
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQ--RSKPSSPIHG-HVGGRGMKVTSPFKTHF-GTAA 118
Query: 189 EIEEGSVAYDKDTNE-SRGFGFVTY 212
+ + T + FGF +Y
Sbjct: 119 TAIPSPLPFSHYTLPYTNPFGFSSY 143
Score = 143 (55.4 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL+ E L N+F + G+I E V DK + S+G+GFVT+ EAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 220 KAVDDPHKTLGGRTIIVKLA--DTHKGKP 246
KA DP + GR LA + KP
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKP 91
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 206 (77.6 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 42/88 (47%), Positives = 56/88 (63%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
+ D + K+FV GLAW T ET+ F GEI E VI DKA+G+S+GYGF+T++
Sbjct: 5 IGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREA 64
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGL 152
E+ +SA + +IDGR A CNLA GL
Sbjct: 65 EAARSACVDATPVIDGRRANCNLASLGL 92
Score = 140 (54.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 152 LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVT 211
++G + D K+++GGL+ E E + F + GEI E V DK + S+G+GFVT
Sbjct: 1 MAGGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVT 60
Query: 212 YKTVEAAKKAVDDPHKTLGGRTIIVKLADT--HKGKP 246
++ EAA+ A D + GR LA + KP
Sbjct: 61 FREAEAARSACVDATPVIDGRRANCNLASLGLQRSKP 97
Score = 42 (19.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 16/67 (23%), Positives = 26/67 (38%)
Query: 799 SPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWI 858
SP +M++ ++++ PL L F SY + LR W K W+
Sbjct: 226 SPPTFSMQQGS-RNRLSASTTSYSLPLKKLRVFGSYQASYHHLLLLRSRAILWFKGCSWL 284
Query: 859 DGRLASS 865
L+ S
Sbjct: 285 ISALSFS 291
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 189 (71.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 40/83 (48%), Positives = 51/83 (61%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V GEIEE VI D+ TGKSRGYGF+T +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 150 (57.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 44/129 (34%), Positives = 56/129 (43%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F GEIEE V D+ T +SRG+GFVT AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQTQXXXXXXXXXXXXXXXYPQAGKAHANTP-- 277
+A DP+ + GR V LA + G P+ PQ A P
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPRVMQPGFTFGV--------PQIHPAFIQRPYG 116
Query: 278 -PVGYSYPQ 285
P Y YPQ
Sbjct: 117 IPTHYVYPQ 125
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 189 (71.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V GEIEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 149 (57.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F GEIEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 189 (71.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 40/83 (48%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V GEIEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 149 (57.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F GEIEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|F1MH29 [details] [associations]
symbol:F1MH29 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00839326 Ensembl:ENSBTAT00000046159 Uniprot:F1MH29
Length = 241
Score = 188 (71.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 52/172 (30%), Positives = 85/172 (49%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L R H V+ D T SRG+ F+TY
Sbjct: 2 KSWSPKEPGQLRKLFIGGLSFETTDESL----RSHCSHSPSCVMTDPNTKCSRGFRFVTY 57
Query: 122 KHMESTQSALRAPSKLIDGRLAVCN--LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV 179
+E +A+ A +D R+ ++ EG A L +K++ GG+ +
Sbjct: 58 ATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGA--HLTVKKIFAGGIKEDTEERH 115
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
L ++F + G+IE + D + + RGF FVT+ ++ K V + T+ G
Sbjct: 116 LRDYFEKPGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNG 167
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 188 (71.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 50/180 (27%), Positives = 88/180 (48%)
Query: 62 IKSVASADPVHR-KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFIT 120
+KS + +P +LF+RGL + TT+E+L F+ G + + V+ D T SR +GF+
Sbjct: 2 LKSESLKEPKQLWRLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVM 61
Query: 121 YKHMESTQSALRA-PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV 179
Y +E +A+ P K+ R+ +A L +K ++GG+ +
Sbjct: 62 YATVEKVDAAVNVRPHKV--NRIGKPKMAVSREDSQRPGAHLTGKKTFVGGIKEDTEEHH 119
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
L ++F ++GEI + D+ +++ RGF FVT ++ K V T+ G V+ A
Sbjct: 120 LRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRA 179
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 188 (71.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 49/168 (29%), Positives = 83/168 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFI-TYKHMESTQSAL 131
RKLF+ L++ TT ++L F G ++ V+ D +SR +GF+ TY ++ +A+
Sbjct: 18 RKLFIGCLSFETTDDSLREHFEKWGTLD-CVVMRDLQIKRSRSFGFVSTYSCVKEVDAAM 76
Query: 132 RAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
A +DG + A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 77 CARPHKVDGHVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIE 136
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V H T+ G VK A
Sbjct: 137 IIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQKYH-TINGHNYEVKKA 183
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 202 (76.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 50/173 (28%), Positives = 88/173 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV G++ +E L + F +GE+ + V YD+ G+SRG+ F+ + E + AL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A + I G+ + E V +K+++GGL + + + L + F + G++++
Sbjct: 89 AREQTIKGK------SVE----VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
+DK T R F F+ ++ E+A KA +T G R VK A +GK
Sbjct: 139 IEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA-VPQGK 190
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 203 (76.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 50/178 (28%), Positives = 91/178 (51%)
Query: 63 KSVASADPVHR-KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P KLF+RGL++ TT E+L + F G + V+ D T +SRG+GF+ +
Sbjct: 3 KSESPKEPEQLWKLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMF 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A ++GR+ L +K+++GG+ + TE
Sbjct: 63 ATVEEVDAAMNARPNKVNGRVLEPKRFVSREDSQRPAAYLTVKKIFVGGIKED--TEEHE 120
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+ E V D+ + + RGF FVT+ ++ + V + T+ G + V+ A
Sbjct: 121 DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKA 178
Score = 39 (18.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 560 VLQILKSMEIESCWIEEHLLEQETFNWSXXXXXXXXXXNLG 600
V+Q ++ SC + + LL+QE + S N G
Sbjct: 161 VIQKYHTVNGHSCEVRKALLKQEMASASFSQRGQSGSGNFG 201
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K E
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 126 STQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185
S + ++G++ A + + V +K+++GGLSP+ E + +FG
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFG 203
Query: 186 RHGEIEEGSVAYDKDTNE 203
GE+E + D TN+
Sbjct: 204 GFGEVESIELPMDNKTNK 221
Score = 150 (57.9 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 162 AQR---KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAA 218
AQR K++IGGLS + T + L ++F + GE+ + ++ D T SRGFGFV +K E+
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 219 KKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
K +D L G+ I K A K K P
Sbjct: 152 DKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 147 (56.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 147 (56.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 147 (56.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 187 (70.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 147 (56.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 186 (70.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 186 (70.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQ 248
+A DP+ + GR V LA + G P+
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPR 93
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 202 (76.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV GLAW T +T+ F GEI E VI DK TG+S+GYGF+T+K E+ A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 134 PSKLIDGRLAVCNLACEG 151
+ +IDGR A CNLAC G
Sbjct: 83 MNPVIDGRRANCNLACLG 100
Score = 154 (59.3 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 154 GVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYK 213
G + D K+++GGL+ E + + +F + GEI E V DK+T S+G+GFVT+K
Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
Query: 214 TVEAAKKAVDDPHKTLGGRTIIVKLA--DTHKGKPP 247
EAA +A + + + GR LA K +PP
Sbjct: 72 EAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPP 107
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 197 (74.4 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D + K+FV GLAW T ++ + F GEI E +I DK TGKS+GYGF+T++ +S
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A+ P+ +IDGR A CN+A G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG 95
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/87 (34%), Positives = 53/87 (60%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL+ E T+ + +F + GEI E + DK+T +S+G+GFVT++ ++A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKP 246
+AV DP+ + GR +A + +P
Sbjct: 73 RAVADPNPVIDGRKANCNIASFGRPRP 99
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 184 (69.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 39/83 (46%), Positives = 51/83 (61%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GL ++TT +L F V G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 146 (56.5 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPRS 94
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 205 (77.2 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 50/150 (33%), Positives = 74/150 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GLA TT E L + G++ + V+ D AT +SRG+GFITY A
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
+IDG+ A S +++ +KL++GGL E L +F + G +
Sbjct: 92 NRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVS 151
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+ DK T + RGF FV + +A KA+
Sbjct: 152 VKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
Score = 141 (54.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTY-KTVEAAKKAV 222
RKL+IGGL+P T E L F+G+ G++ + V D T SRGFGF+TY K++ +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 223 DDPHKTLGGRTIIVKLA 239
+ PH + G+T+ K A
Sbjct: 92 NRPH-IIDGKTVEAKRA 107
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 196 (74.1 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 47/151 (31%), Positives = 80/151 (52%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT+E+L + F G + + V+ D T SRG+GF+TY
Sbjct: 3 KSESPIEPEQLRKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
++ +A S +DGR+ A L RK+++GG+ + L
Sbjct: 63 ATVKEVDAAR---SHKVDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLR 119
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTY 212
++F ++G+IE + D+ + + RGF VT+
Sbjct: 120 DYFKQYGKIEVIEIMTDRGSGKKRGFASVTF 150
Score = 135 (52.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 35/76 (46%), Positives = 44/76 (57%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TV+ A
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARS 73
Query: 224 DPHKTLGGRTIIVKLA 239
HK + GR + K A
Sbjct: 74 --HK-VDGRVVEPKRA 86
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 183 (69.5 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 37/85 (43%), Positives = 57/85 (67%)
Query: 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKK 220
++Q K+Y+G LS +VT + L +FFG++GEIEE + D++T S+GF F+TY T +AA++
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 221 AVDDPHKT-LGGRTIIVKLADTHKG 244
AV + L GR I V +A + G
Sbjct: 75 AVSKANGIDLQGRKIRVNIARENTG 99
Score = 134 (52.2 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K++V L+++ T++ L + F +GEIEE +I D+ TG+S+G+ FITY ++ Q A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 134 PSKL-IDGRLAVCNLACE 150
+ + + GR N+A E
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 183 (69.5 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 37/85 (43%), Positives = 57/85 (67%)
Query: 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKK 220
++Q K+Y+G LS +VT + L +FFG++GEIEE + D++T S+GF F+TY T +AA++
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 221 AVDDPHKT-LGGRTIIVKLADTHKG 244
AV + L GR I V +A + G
Sbjct: 75 AVSKANGIDLQGRKIRVNIARENTG 99
Score = 134 (52.2 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K++V L+++ T++ L + F +GEIEE +I D+ TG+S+G+ FITY ++ Q A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 134 PSKL-IDGRLAVCNLACE 150
+ + + GR N+A E
Sbjct: 79 ANGIDLQGRKIRVNIARE 96
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 182 (69.1 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+Y+GGL E L+NFF R GEI +V D++T+ S+G+GFVT+K E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 220 KAVDDPHKTLGGRTIIVKLADTH-KGKPPQTQ 250
+A DP+ T+ GR KLA K KP Q+Q
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGAKVKPNQSQ 100
Score = 165 (63.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K++V GL W T E L F+ GEI V+ D+ T +S+GYGF+T+K ES
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ I+GR+ C LA G
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 203 (76.5 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 54/198 (27%), Positives = 96/198 (48%)
Query: 60 EEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFI 119
EE K +++D KLF+ G++W+T E L F +G++ E ++ D+ TG++RG+GFI
Sbjct: 4 EEQKMESASDL--GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 120 TY------------KHM------ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDL 161
+ KH+ E+ ++ R +++ + +L G
Sbjct: 62 VFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG--GA 119
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
+K+++GGL +T N+F + G I + V YD +T RGFGF+T+ + E+
Sbjct: 120 RTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMV 179
Query: 222 VDDPHKTLGGRTIIVKLA 239
+ L G+ + VK A
Sbjct: 180 LHKTFHELNGKMVEVKRA 197
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 181 (68.8 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 56/143 (39%), Positives = 75/143 (52%)
Query: 51 LGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT 110
L + YPSI + D K+FV GL ++TT +L F G+I+E VI D+ T
Sbjct: 11 LETMYPSIQK--------DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQT 62
Query: 111 GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGL----------SGVSAV-P 159
GKSRGYGF+T + + A + P+ +IDGR A NLA G +GV V P
Sbjct: 63 GKSRGYGFVTMMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPRSPLTGYSTGVQQVHP 122
Query: 160 DLAQRKLYIGGLS-PEVTTEVLL 181
L QR+ Y GLS P V + +L
Sbjct: 123 TLIQRQ-Y--GLSQPYVYPQAVL 142
Score = 146 (56.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+I+E V D+ T +SRG+GFVT AA+
Sbjct: 21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAE 80
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 81 RACKDPNPIIDGRKANVNLA--YLGAKPRS 108
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 187 (70.9 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/189 (26%), Positives = 95/189 (50%)
Query: 53 SQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGK 112
S +P++ + +S+ + + RKLF GL + TT E+L + F G + + V+ D T +
Sbjct: 2 SSHPAVMSKSESLKEPEQL-RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 60
Query: 113 SRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPD--LAQRKLYIGG 170
SRG+GF+TY +E + ++ ++ + NL S P L +K+++GG
Sbjct: 61 SRGFGFVTYAPVEEVDR--KDHTRWME---ELWNLRAVSRED-SQTPGAHLTVKKIFVGG 114
Query: 171 LSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLG 230
+ + L ++ ++G+IE + D+ + + GF FVT+ ++ K V + T+
Sbjct: 115 IKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQKYHTVN 174
Query: 231 GRTIIVKLA 239
G V+ A
Sbjct: 175 GHNCEVRKA 183
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 199 (75.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/157 (28%), Positives = 78/157 (49%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
+FV L+W+ E L F G + VIY++ T +SRGYG++ +++ + A++
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 134 PSKLIDGRLAVCNLACEGLSG-------VSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR 186
K IDGR C+++ +G P L++G LS + + F +
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAK 289
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
HGE+ + +T + +GFG+V + +E AKKA+D
Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 48/167 (28%), Positives = 84/167 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL++ TT ++L + F + + ++ D + +SRG+G I Y +E +A+ A
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLN-FFGRHGEIEE 192
+DGR+ +A L +K+++GG S E T E L +F ++G+IE
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGAHLTVKKIFVGG-SKEDTEEHHLRVYFEQYGKIEV 119
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D + + RGF FVT+ ++ V + T+ G V+ A
Sbjct: 120 IEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKA 166
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 177 (67.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 45/150 (30%), Positives = 76/150 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F+ + + V+ D T +SRG+GF+ Y +E +A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMC 70
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DG + A V L +K+++GG+ E T E L + +G I+
Sbjct: 71 ARPHKVDGHVVEPKRAISREDSVKPGAHLMVKKIFVGGIK-EDTEEYNLRDYFEYGNIKT 129
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
V D+ + + RGF F+T+ + K V
Sbjct: 130 IEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 177 (67.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 47/167 (28%), Positives = 83/167 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R+LF+ GL++ T ++L F + G + + V+ D + +GF+TY +E +A+
Sbjct: 7 RRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRDP-----QSFGFVTYSCVEEVDAAMC 60
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L K+++GG+ + L ++F ++G+IE
Sbjct: 61 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTV-KIFVGGIKEDAEEYNLRDYFEKYGKIET 119
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + H T+ G V+ A
Sbjct: 120 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVNYH-TINGHNCEVRKA 165
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 194 (73.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 58/208 (27%), Positives = 96/208 (46%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G + EE K A +L+V L + TS L F G + + ++YDK T
Sbjct: 95 GDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTD 154
Query: 112 KSRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR------ 164
+SRG+GF+T +E + A++ S I GR N G + V R
Sbjct: 155 RSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSY 214
Query: 165 -----KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
K+Y G L +T++ L + FG + V Y+++T SRGFGF+++++ E +
Sbjct: 215 VDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
Query: 220 KAVDDPHKT-LGGRTIIVKLADTHKGKP 246
A+ + + GR + + LA + + KP
Sbjct: 275 SALATMNGVEVEGRALRLNLA-SEREKP 301
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/113 (34%), Positives = 60/113 (53%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D H K++ L WN TS+ L AF + VIY++ TG+SRG+GFI+++ E+ Q
Sbjct: 216 DSPH-KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
Query: 129 SALRAPSKL-IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL-SPEVTTEV 179
SAL + + ++GR NLA E + P + + + L S EV + V
Sbjct: 275 SALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNV 327
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 193 (73.0 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 47/166 (28%), Positives = 84/166 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ GL++ TT E+L + F G + V+ D T +SRG GF+ Y +E +A+ A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 75 RPH-VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + +GF FVT+ ++ K V + + G + V+ A
Sbjct: 134 EIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKA 178
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 176 (67.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GL ++TT +L F G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 129 SALRAPSKLIDGRLAVCNLACEG 151
A + P+ +IDGR A NLA G
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG 89
Score = 146 (56.5 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 67 RACKDPNPIIDGRKANVNLA--YLGAKPRS 94
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 191 (72.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 54/180 (30%), Positives = 88/180 (48%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L R H V+ D T SRG+ F+TY
Sbjct: 3 KSWSPKEPGQLRKLFIGGLSFETTDESL----RSHCSHSPSCVMTDPNTKCSRGFRFVTY 58
Query: 122 KHMESTQSALRAPSKLIDGRLAVCN--LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV 179
+E +A+ A +D R+ ++ EG A L +K++ GG+ +
Sbjct: 59 ATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGA--HLTVKKIFAGGIKEDTEERH 116
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
L ++F +G+IE + D + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 117 LRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQKYHTVNGHNREVRKA 176
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 190 (71.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 49/166 (29%), Positives = 81/166 (48%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT +L F G + + V+ D SRG+ F+TY +E + +
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 133 A-PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
A P K++ G + A + L K+++GG+ + L ++F ++G+IE
Sbjct: 97 ARPHKVV-GCVVEPKRAVSREDSIIPGAHLMVEKIFVGGIKEDTEEYNLRDYFEKYGKIE 155
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVK 237
V D+ + + RGF FVT+ + K V H T+ G VK
Sbjct: 156 TIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYH-TVNGHNCEVK 200
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 175 (66.7 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 37/82 (45%), Positives = 55/82 (67%)
Query: 159 PDLAQRKLYIGGLSPEVT-TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
P+ + K+Y+ GL P +T TE L+++F R GEI V D T S+GFGFVT++ VE+
Sbjct: 4 PNDRETKIYVAGL-PWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVES 62
Query: 218 AKKAVDDPHKTLGGRTIIVKLA 239
A +A ++P+ T+ GRT+ KLA
Sbjct: 63 ATRACENPNHTIDGRTVNCKLA 84
Score = 160 (61.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K++V GL W T +E L + F GEI V+ D AT +S+G+GF+T++ +ES A
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 134 PSKLIDGRLAVCNLACEG 151
P+ IDGR C LA G
Sbjct: 70 PNHTIDGRTVNCKLAYLG 87
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 172 (65.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 41/100 (41%), Positives = 53/100 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G P A + D K+FV GL ++TT +L F G+IEE VI D+ TG
Sbjct: 13 GFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
KSRGYGF+T + + A + P+ IDGR A NLA G
Sbjct: 73 KSRGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLG 112
Score = 147 (56.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 90 RACKDPNPNIDGRKANVNLA--YLGAKPRS 117
Score = 40 (19.1 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 266 YPQAGKAHANTPPVGYS-YP 284
Y A A+A PP Y YP
Sbjct: 172 YTPASPAYAQYPPATYDQYP 191
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 186 (70.5 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 44/159 (27%), Positives = 79/159 (49%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT+E+L + F + + + D T +SRG+GF+TY +E +A+
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DG A S L +++ +GG+ + L ++F +G+IE
Sbjct: 65 ARPHKVDGSFVEPKRAVSREDSQSPGAHLTVKEISVGGIKEDTEEHHLRDYFEHYGKIEV 124
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+ D+ + + F FVT+ ++ K V + T+ G
Sbjct: 125 IEIMTDRGSGKKE-FAFVTFDDHDSVDKIVIQKYHTVNG 162
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 187 (70.9 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 56/189 (29%), Positives = 92/189 (48%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q E+IK + + K+FV L+W+ + L F GE+ + + D TG
Sbjct: 52 GNQNRIEGEQIKVSKNVEE-EGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTG 110
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GF+ K S + L ++G + + E + P +K+++G L
Sbjct: 111 RSRGFGFVLIKDAASVEKILDQKEHRLNGDV----IDPEKAKVMKNDP---VKKIFVG-L 162
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA-AKKAVDDPHKTLG 230
+PE T + FG GEIE + D +N+ RGF F+T+K E KK ++ T+
Sbjct: 163 NPEATEKN--RDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTIS 220
Query: 231 GRTIIVKLA 239
GR +K+A
Sbjct: 221 GRKCEIKVA 229
Score = 120 (47.3 bits), Expect = 0.00033, P = 0.00033
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++G LS + L N+F + GE+ + ++ D +T SRGFGFV K + +K +D
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L G I + A K P
Sbjct: 133 KEHRLNGDVIDPEKAKVMKNDP 154
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 192 (72.6 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 51/168 (30%), Positives = 82/168 (48%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ T ++L F+ G + + V+ D T SRG+GF+TY +E +A+
Sbjct: 32 RKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMC 91
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE- 191
A +DGR+ A V L +K ++GG+ + L ++F ++G+IE
Sbjct: 92 AWLHKVDGRVVEPKKAVSREDSVKLGAHLMVKKTFVGGIKEDTEEYNLKDYFEKYGKIET 151
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
EG + + RGF F + + K V H T+ G VK A
Sbjct: 152 EGM---ENRQSGRRGFAFAIFGDHDVDKIVVQK-HHTINGHNCEVKKA 195
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 173 (66.0 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
+ D + K++V GL W T +E L + F G+I ++ D+ TG+S GYGF+T++ ES
Sbjct: 46 NVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAES 105
Query: 127 TQSALRAPSKLIDGRLAVCNLACEG 151
A + P +IDGR A CNLA G
Sbjct: 106 ATRACQNPKPVIDGREAKCNLAYIG 130
Score = 139 (54.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+Y+GGL E E L ++F + G+I ++ D++T S G+GFVT++ E+A
Sbjct: 48 DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESAT 107
Query: 220 KAVDDPHKTLGGRTIIVKLA 239
+A +P + GR LA
Sbjct: 108 RACQNPKPVIDGREAKCNLA 127
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 172 (65.6 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 41/100 (41%), Positives = 53/100 (53%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G P A + D K+FV GL ++TT +L F G+IEE VI D+ TG
Sbjct: 13 GFPRPPAAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
KSRGYGF+T + + A + P+ IDGR A NLA G
Sbjct: 73 KSRGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLG 112
Score = 147 (56.8 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 90 RACKDPNPNIDGRKANVNLA--YLGAKPRS 117
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 188 (71.2 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 54/180 (30%), Positives = 86/180 (47%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS +S DP RKLF+ GL+ T+E+L + G + + V D T SRG+GFIT
Sbjct: 3 KSESSKDPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITC 62
Query: 122 KH--MESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV 179
+E +A+ A +DGR+ A L +K ++GG+ +
Sbjct: 63 TTATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKTFVGGIKEDTEEHH 122
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
L ++F ++G+IE + D + + R F FVT+ ++ K V + T+ G VK A
Sbjct: 123 LRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVKKA 181
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 45/172 (26%), Positives = 84/172 (48%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL T E+L ++ G++ + VI D ++ +SRG+GF+ + + +A+
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ + +KL++GG+ + T L ++F R+G I+
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID- 139
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKG 244
++ + + FGFVT+ + K V + T+ G ++ A + +G
Sbjct: 140 -AIEIIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQG 190
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 45/172 (26%), Positives = 84/172 (48%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL T E+L ++ G++ + VI D ++ +SRG+GF+ + + +A+
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ + +KL++GG+ + T L ++F R+G I+
Sbjct: 81 ARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFERYGTID- 139
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKG 244
++ + + FGFVT+ + K V + T+ G ++ A + +G
Sbjct: 140 -AIEIIRQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQG 190
>UNIPROTKB|F1LW17 [details] [associations]
symbol:F1LW17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00567724
Ensembl:ENSRNOT00000046658 ArrayExpress:F1LW17 Uniprot:F1LW17
Length = 249
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L R H E+ + D +SRG+GF+TY +E +A+
Sbjct: 32 RKLFIGGLSFETTDDSL----REH--FEKWGTLTDCGNKRSRGFGFLTYSCVEEVDAAVC 85
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A R+ V A V L +KLY+GG+ + L +F ++G+IE
Sbjct: 86 ARPHKAAVRV-VGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIET 144
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238
V + + + RGF FVT+ + K + H G + K+
Sbjct: 145 IEVMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEVGKV 190
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 170 (64.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 41/150 (27%), Positives = 75/150 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ T ++L F G + + V+ D T +SR + F+TY ++ +A+
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+I+
Sbjct: 73 AQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKT 132
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
V D+ + + R FVT+ + K V
Sbjct: 133 MEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 31/77 (40%), Positives = 40/77 (51%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV- 222
RKL+IGGLS E T + L F + G + + V D T SR F FVTY V+ A+
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 223 DDPHKTLGGRTIIVKLA 239
PH + GR + K A
Sbjct: 73 AQPHN-VDGRVVEPKRA 88
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 168 (64.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 36/117 (30%), Positives = 63/117 (53%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
++G++ A + + V +K+++GGLSP+ E + +FG GE+E
Sbjct: 61 EHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYFGGFGEVE 111
Score = 144 (55.7 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
++IGGLS + T + L ++F + GE+ + ++ D T SRGFGFV +K E+ K +D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 226 HKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A K K P
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEP 82
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 188 (71.2 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 46/179 (25%), Positives = 88/179 (49%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ G++W+T L F GE+ + V+ +KATG+ RG+GF+ + L+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 134 PSKL----IDGRLAVCN--LACEGLSGV-------SAVPDLAQRKLYIGGLSPEVTTEVL 180
+ +D + A+ + G SG + ++ +K+++GGL P +T++
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+F +G + + + D+ T RGFGFV++ + ++ + L G+ + VK A
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 121 (47.7 bits), Expect = 0.00053, P = 0.00053
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
Q KL+IGG+S + +L +F GE+ + +V +K T RGFGFV + + +
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL 64
Query: 223 DDPHKTLGGRTIIVKLADTHKGKPP 247
D H + R + VK A + + + P
Sbjct: 65 QDKHH-IDNRDVDVKRAMSREEQSP 88
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 185 (70.2 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 45/163 (27%), Positives = 79/163 (48%)
Query: 87 ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146
E L F GE++E V+ D T +SRG+GF+T+ L +D +
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 147 LACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNES 204
+A A P + R K+++GGLS T E + ++F + G++++ + +DK TN
Sbjct: 61 VAFPR----RAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRH 116
Query: 205 RGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
RGFGFVT+++ + +K + + + + K A + P
Sbjct: 117 RGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP 159
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NTT E + F G++++ +++DK T + RG+GF+T++ + +
Sbjct: 76 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 135
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 136 IHFHEINNKMVECKKA 151
>UNIPROTKB|F1LUE7 [details] [associations]
symbol:F1LUE7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00566822
Ensembl:ENSRNOT00000052211 ArrayExpress:F1LUE7 Uniprot:F1LUE7
Length = 256
Score = 178 (67.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L R H E+ + D +SRG+GF+TY +E +A+
Sbjct: 2 RKLFIGGLSFETTDDSL----REH--FEKWGTLTDCGNKRSRGFGFLTYSCVEEVDAAVC 55
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A R+ V A V L +KLY+GG+ + L +F ++G+IE
Sbjct: 56 ARPHKAAVRV-VGKRAVSREDSVKPGAHLMVKKLYVGGIKEDTEEYNLRGYFKKYGKIET 114
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238
V + + + RGF FVT+ + K + H G + K+
Sbjct: 115 IEVMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEVGKV 160
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 179 (68.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 48/174 (27%), Positives = 86/174 (49%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGE---IEEGAVIYDKATGKSRGYGFITYKHMESTQSA 130
KLF+ L++ TT ++L R H E + + V+ D +S G+GF+TY +E +A
Sbjct: 25 KLFIGYLSFETTDDSL----REHSEKWTLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAA 80
Query: 131 LRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
+ A +DGR+ V A V L +K+++GG+ + L ++F ++G+I
Sbjct: 81 MCARPHKVDGRV-VGPRAVSREDSVKPGTHLTVKKIFVGGVREDREEYNLKDYFEKYGKI 139
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKG 244
V D+ + + RGF FVT+ ++ K + T+ G +K + +G
Sbjct: 140 GTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKVLSKQG 193
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 181 (68.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 51/180 (28%), Positives = 87/180 (48%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAA--FRVHGEIEEGAVIYDKATGKSRGYGFI 119
KS +S +P +KLFV GL++ T E+L F G + + V+ D T +SRG+GF+
Sbjct: 3 KSESSKEPEQLQKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFV 62
Query: 120 TYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEV 179
TY +E +A+ A + GR AV L +K+++GG+ +
Sbjct: 63 TYATVEEVDAAMNARPHKVGGR-AVEPKRAGSKDSQRPGAHLTMKKIFVGGVKEDTEEHR 121
Query: 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
L ++ ++G+ E + D+ + + R F FVT+ + K V + T+ G V+ A
Sbjct: 122 LRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDN--SVDKIVIQKYSTVNGHNCEVRKA 178
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 40/95 (42%), Positives = 54/95 (56%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVL--LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYK 213
S P+ Q KL++GGLS E T E L + F + G + + V D +T SRGFGFVTY
Sbjct: 7 SKEPEQLQ-KLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYA 65
Query: 214 TVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKPP 247
TVE A++ PHK +GGR + K A + + P
Sbjct: 66 TVEEVDAAMNARPHK-VGGRAVEPKRAGSKDSQRP 99
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 177 (67.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 50/185 (27%), Positives = 92/185 (49%)
Query: 55 YPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSR 114
+P+I + +S+ + + RKLF+ GL++ TT E+L + F + V+ D T +SR
Sbjct: 2 HPAIISKSESLKEPEQL-RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSR 60
Query: 115 GYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPE 174
G GF TY +E +A+ A +DGR+ ++ E A + K++I G+ +
Sbjct: 61 GSGFDTYTTVEEMDAAMNARPHKVDGRV----VSREDSQRPGAHLTV---KIFISGIKED 113
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI 234
L ++F ++ +IE + D+ + + R F FVT+ ++ K + T+ G
Sbjct: 114 TEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQKYHTVNGHNC 173
Query: 235 IVKLA 239
V+ A
Sbjct: 174 EVRKA 178
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 187 (70.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 54/185 (29%), Positives = 84/185 (45%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
+P R L+V GL T + L F G ++ +I DK K YGF+ Y +
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK-NAKGYNYGFVEYDDPGAAD 139
Query: 129 SALRAPS--KLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR 186
A++ + ++ + V N A + + + +++G LS EV EVL F
Sbjct: 140 RAMQTLNGRRVHQSEIRV-NWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSV 198
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KTLGGRTIIVKLADTHKGK 245
G + E V +D T SRG+GFV ++ A+KA+ + LG R I A+ KG+
Sbjct: 199 FGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWAN-QKGQ 257
Query: 246 PPQTQ 250
P Q
Sbjct: 258 PSIAQ 262
Score = 143 (55.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 41/143 (28%), Positives = 65/143 (45%)
Query: 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
H +FV L+ E L AF V G + E V++D TG+SRGYGF+ ++ + AL
Sbjct: 175 HFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKAL 234
Query: 132 RA-PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIG-GLSPEVTTEVLLNFFGRHGE 189
+ + + R CN A + P +AQ++ G++P TT FG H
Sbjct: 235 SSMDGEWLGSRAIRCNWANQ-----KGQPSIAQQQAMSAVGMTP--TTP-----FGHHHF 282
Query: 190 IEEGSVAYDKDTNESRGFGFVTY 212
G +Y+ N++ + Y
Sbjct: 283 PTHGMQSYEMVVNQTPAYQTTCY 305
Score = 47 (21.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 362 PTGSF--YFAQTPRLFSKSLPFSN 383
P G+F AQ+P F + +PFSN
Sbjct: 418 PQGNFGPNSAQSPAGFQQPMPFSN 441
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 134 (52.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D + KL++GG++ E + E L +F R+G + E VA +K T + RGFGFV +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 220 KAVDDPHKTLGGRTIIVKLADTHK 243
KA+ D H LG + K H+
Sbjct: 62 KALRDTHFILGKPVDVRKAIRKHE 85
Score = 126 (49.4 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+K+++GGLS T E ++F R G + V +D TN RGFGFVTY + ++ + +
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 224 DPHKTLGGRTIIVKLADTHKG 244
L + + VK A +G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 107 (42.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
KLFV G+A T+ E L F +G + E V +K TGK RG+GF+ + + ALR
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 165 (63.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
I+S + +H KL + GL + TT E+L F G + V+ D T +SR GF+TY
Sbjct: 13 IESPKEPEQLH-KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTY 71
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ A + +DGRL A L +K++ GG+ + +
Sbjct: 72 NTVEEVDAAMNARPQKMDGRLVKPKRAVSREDSQRPGTQLTVKKIFEGGIKEDTEEHNVR 131
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI 234
++F +G+I+ + D+ + + F V ++ K + T+ G T+
Sbjct: 132 DYFEHYGKIDMIEIMTDRSSGKKE-FALVPLDDHDSVDKIAIQKYHTVNGTTV 183
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL IGGL + T E L N F + G + V D +T SR GFVTY TVE A++
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 225 PHKTLGGRTIIVKLADTHK-GKPPQTQ 250
+ + GR + K A + + + P TQ
Sbjct: 84 RPQKMDGRLVKPKRAVSREDSQRPGTQ 110
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 165 (63.1 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 47/144 (32%), Positives = 68/144 (47%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L N T E L + F GEIE ++ DK TG+S GYGF+ Y + + A+
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ L RL + SA + LY+ GL +T + L F ++G I
Sbjct: 101 NGL---RLQTKTIKVSYARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 195 VAYDKDTNESRGFGFVTY-KTVEA 217
+ D+ T SRG GF+ + K +EA
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEA 179
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 50/160 (31%), Positives = 78/160 (48%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
LFV L+WN L F G + VI ++ATGKSRGYG++ ++ + + AL
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR----------KLYIGGLSPEVTTEVLLNF 183
K IDGR +++ + D A++ L+IG LS + L N
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNV 289
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
FG +G + V DT + +GFG+V + +V+ AK A++
Sbjct: 290 FGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 50/160 (31%), Positives = 78/160 (48%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
LFV L+WN L F G + VI ++ATGKSRGYG++ ++ + + AL
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR----------KLYIGGLSPEVTTEVLLNF 183
K IDGR +++ + D A++ L+IG LS + L N
Sbjct: 230 QGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNV 289
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
FG +G + V DT + +GFG+V + +V+ AK A++
Sbjct: 290 FGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALE 329
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 163 (62.4 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
P +D + +A A P + R K+++GGLS E + +F + G++
Sbjct: 78 PHHELDSKTIDPKVAFPR----RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVS 133
Query: 192 EGS 194
GS
Sbjct: 134 AGS 136
Score = 154 (59.3 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L ++F + GEI E V D T SRGFGFVT+ + K +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
PH L +TI K+A + +P
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQP 99
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 185 (70.2 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 57/190 (30%), Positives = 90/190 (47%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKA-TGKSRGYGFITYKHM 124
A+ +P R L+V GL T + L F G + +I DK K YGF+ +
Sbjct: 83 AAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDP 142
Query: 125 ESTQSALRAPS--KLIDGRLAVCNLACEGLSGVSAVPDLAQR-KLYIGGLSPEVTTEVLL 181
+ + A++ + ++ + V N A + S + D + +++G LS EV EVLL
Sbjct: 143 GAAERAMQTLNGRRIHQSEIRV-NWAYQ--SNTANKEDTSNHFHIFVGDLSNEVNDEVLL 199
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KTLGGRTIIVKLAD 240
F G + E V +D T SRG+GFV ++ A+KA+ + LG R I A+
Sbjct: 200 QAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWAN 259
Query: 241 THKGKPPQTQ 250
KG+P +Q
Sbjct: 260 -QKGQPSISQ 268
WARNING: HSPs involving 657 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 901 830 0.00080 122 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 907
No. of states in DFA: 621 (66 KB)
Total size of DFA: 399 KB (2195 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.58u 0.15s 66.73t Elapsed: 00:00:03
Total cpu time: 66.61u 0.15s 66.76t Elapsed: 00:00:03
Start: Fri May 10 01:28:18 2013 End: Fri May 10 01:28:21 2013
WARNINGS ISSUED: 2