BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045707
(901 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 96.3 bits (238), Expect = 7e-20, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL W+TT + L F +G + + ++ D ATG+SRG+GF++++ S ++
Sbjct: 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRK---LYIGGLSPEVTTEVLLNFFGRHGEI 190
++DG++ + A+P Q K +++GG+ P+V + FF + G I
Sbjct: 65 -QHILDGKV---------IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI 114
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+ + DKDT +SRGFGFVTY + +A + + R I +K A+
Sbjct: 115 IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 12 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 71
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 72 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 131
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 132 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 178
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 126
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 127 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 132
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 133 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 179
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 15 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 74
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 75 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 134
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 135 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 181
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
D K+FV GL ++TT +L F G+IEE VI D+ TGKSRGYGF+T + +
Sbjct: 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 73
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSP 173
A + P+ +IDGR A NLA G A P Q IG P
Sbjct: 74 RACKDPNPIIDGRKANVNLAYLG-----AKPRSLQTGFAIGVSGP 113
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D K+++GGL T L +F G+IEE V D+ T +SRG+GFVT AA+
Sbjct: 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 73
Query: 220 KAVDDPHKTLGGRTIIVKLADTHKGKPPQT 249
+A DP+ + GR V LA + G P++
Sbjct: 74 RACKDPNPIIDGRKANVNLA--YLGAKPRS 101
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L + T L A FR G I + D TG S GY F+ + +Q A++
Sbjct: 17 LIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVL 76
Query: 135 SKLI--DGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
+ + + RL V G S + LY+ L +T + L FG++G I +
Sbjct: 77 NGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 129
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTL---GGRTIIVKLADTH 242
++ DK T RG FV Y E A++A+ + + G + + V+LA+ H
Sbjct: 130 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEH 182
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L N T + L + F GE+E +I DK G S GYGF+ Y + + A RA
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV---TAKDAERAI 61
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ L RL + S V + LYI GL +T + + + F R G I
Sbjct: 62 NTLNGLRLQSKTIKVSYARPSSEV--IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 119
Query: 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVD--DPHKTLG-GRTIIVKLA 239
V D+ T SRG F+ + A++A+ + HK G I VK A
Sbjct: 120 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 167
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L N T E + F GEIE ++ DK TG+S GYGF+ Y + + A+
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ L RL + SA + LY+ GL +T + L F ++G I
Sbjct: 65 NGL---RLQTKTIKVSYARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 119
Query: 195 VAYDKDTNESRGFGFVTY-KTVEA--AKKAVDDPHKTLGGRTIIVKLA 239
+ D+ T SRG GF+ + K +EA A K ++ + I VK A
Sbjct: 120 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 36 LDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRV 95
+DP + ++ L+ L Q +I +SA L+V GL T + L F
Sbjct: 52 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 111
Query: 96 HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+G I ++ D+ TG SRG GFI + + A++
Sbjct: 112 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
++ L + L +T E + FG GEIE + DK T +S G+GFV Y + A+KA
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 222 VDDPHKTLGGRTIIVKLADTHKGKP 246
++ TL G + K +P
Sbjct: 61 IN----TLNGLRLQTKTIKVSYARP 81
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L N T + L + F GE+E +I DK G S GYGF+ Y + + A RA
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYV---TAKDAERAI 61
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ L RL + S V + LYI GL +T + + + F R G I
Sbjct: 62 NTLNGLRLQSKTIKVSYARPSSEV--IKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 119
Query: 195 VAYDKDTNESRGFGFVTYKTVEAAKKAV 222
V D+ T SRG F+ + A++A+
Sbjct: 120 VLVDQTTGLSRGVAFIRFDKRSEAEEAI 147
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
L + L +T + L + F GE+E + DK S G+GFV Y T + A++A++
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-- 62
Query: 226 HKTLGGRTIIVKLADTHKGKP 246
TL G + K +P
Sbjct: 63 --TLNGLRLQSKTIKVSYARP 81
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K + L +
Sbjct: 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77
Query: 134 PSKLIDGR 141
+DGR
Sbjct: 78 RPHTLDGR 85
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGL T E L ++F ++GE+ + + DK TN+SRGFGFV +K +
Sbjct: 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77
Query: 225 PHKTLGGRTI 234
TL GR I
Sbjct: 78 RPHTLDGRNI 87
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L + T L A FR G I ++ D TG S GY F+ + +Q A++
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 135 SKLI--DGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
+ + + RL V G S + LY+ L +T + L FG++G I +
Sbjct: 66 NGITVRNKRLKVSYARPGGES-------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTL---GGRTIIVKLA 239
++ DK T RG FV Y E A++A+ + + G + + V+LA
Sbjct: 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + T E L +FG+ GE++E V D T SRGFGFVT+ K +
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L +TI K+A + +P
Sbjct: 87 SRHELDSKTIDPKVAFPRRAQP 108
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES-----TQ 128
K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+ Q
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86
Query: 129 SALRAPSKLIDGRLA 143
S SK ID ++A
Sbjct: 87 SRHELDSKTIDPKVA 101
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V L N T + + F G+IE ++ DK TG+S GYGF+ Y A+
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 66
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ L +L + SA + LY+ GL ++ + + F ++G I
Sbjct: 67 NGL---KLQTKTIKVSYARPSSA--SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSR 121
Query: 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVD--DPHKTLG-GRTIIVKLAD 240
+ D+ T SRG GF+ + A++A+ + K LG I VK A+
Sbjct: 122 ILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 170
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 37 DPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVH 96
DP + ++ L+ L Q +I +SA L+V GL + + + F +
Sbjct: 55 DPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQY 114
Query: 97 GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
G I ++ D+ATG SRG GFI + + A++
Sbjct: 115 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 151
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
++ L + L +T + + FG G+IE + DK T +S G+GFV Y A KA
Sbjct: 3 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 62
Query: 222 VDDPHKTLGGRTIIVKLADTHKGKP 246
++ TL G + K +P
Sbjct: 63 IN----TLNGLKLQTKTIKVSYARP 83
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL+++T ++L F +G+I E V+ D+ T +SRG+GF+T+++++ + A+ A
Sbjct: 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73
Query: 134 PS-KLIDGR 141
+ K +DGR
Sbjct: 74 MNGKSVDGR 82
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++GGLS + + L F ++G+I E V D++T SRGFGFVT++ ++ AK A+
Sbjct: 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73
Query: 225 PH-KTLGGRTIIVKLA 239
+ K++ GR I V A
Sbjct: 74 MNGKSVDGRQIRVDQA 89
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+K+++GGLSP+ E + +FG GE+E + D TN+ RGF F+T+K E KK ++
Sbjct: 2 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 61
Query: 224 DPHKTLGGRTIIVKLA 239
+ +G +K+A
Sbjct: 62 KKYHNVGLSKCEIKVA 77
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
+K+FV GL+ +T E + F GE+E + D T K RG+ FIT+K E + +
Sbjct: 2 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 60
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R L+V L T + L F+V G I ++ DK K+ Y F+ Y AL+
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQ 59
Query: 133 APS-KLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191
+ K I+ + N A + S S+ D L++G L+ V E L N F
Sbjct: 60 TLNGKQIENNIVKINWAFQ--SQQSSSDDTFN--LFVGDLNVNVDDETLRNAFKDFPSYL 115
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KTLGGRTIIVKLA 239
G V +D T SRG+GFV++ + + A+ A+D + L GR + + A
Sbjct: 116 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + T E L +FG+ GE++E V D T SRGFGFVT+ K +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 225 PHKTLGGRTIIVKLA 239
L +TI K+A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES-----TQ 128
K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+ Q
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 129 SALRAPSKLIDGRLA 143
S SK ID ++A
Sbjct: 62 SRHELDSKTIDPKVA 76
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG S + +R LY+GGL+ EV +VL F G+I + + D +T + RGF FV
Sbjct: 1 GSSGSSGMAT-TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFV 59
Query: 211 TYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239
++ E A A+D+ +++ L GRTI V LA
Sbjct: 60 EFELAEDAAAAIDNMNESELFGRTIRVNLA 89
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R L+V GLA + L AAF G+I + + D T K RG+ F+ ++ E +A+
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 71
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
++R LY+GGL+ EV +VL F G+I + + D +T + RGF FV ++ E A A
Sbjct: 1 SKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 60
Query: 222 VDDPHKT-LGGRTIIVKLA 239
+D+ +++ L GRTI V LA
Sbjct: 61 IDNMNESELFGRTIRVNLA 79
Score = 36.6 bits (83), Expect = 0.069, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R L+V GLA + L AAF G+I + + D T K RG+ F+ ++ E +A+
Sbjct: 3 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 61
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+R LY+GGL+ EV +VL F G+I + + D +T + RGF FV ++ E A A+
Sbjct: 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66
Query: 223 DDPHKT-LGGRTIIVKLA 239
D+ +++ L GRTI V LA
Sbjct: 67 DNMNESELFGRTIRVNLA 84
Score = 36.6 bits (83), Expect = 0.065, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R L+V GLA + L AAF G+I + + D T K RG+ F+ ++ E +A+
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 66
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 87
Query: 133 APSKLIDGRL 142
A IDGR+
Sbjct: 88 ARPHSIDGRV 97
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L N++ + G++ + V D + SRGFGFVT+ ++ A+
Sbjct: 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 87
Query: 224 DPHKTLGGRTIIVKLA 239
++ GR + K A
Sbjct: 88 ARPHSIDGRVVEPKRA 103
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+R LY+GGL+ EV +VL F G+I + + D +T + RGF FV ++ E A A+
Sbjct: 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122
Query: 223 DDPHKT-LGGRTIIVKLA 239
D+ +++ L GRTI V LA
Sbjct: 123 DNMNESELFGRTIRVNLA 140
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R L+V GLA + L AAF G+I + + D T K RG+ F+ ++ E +A+
Sbjct: 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 122
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+R LY+GGL+ EV +VL F G+I + + D +T + RGF FV ++ E A A+
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 223 DDPHKT-LGGRTIIVKLA 239
D+ +++ L GRTI V LA
Sbjct: 65 DNMNESELFGRTIRVNLA 82
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R L+V GLA + L AAF G+I + + D T K RG+ F+ ++ E +A+
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
++IGGLS + T + L ++F + GE+ + ++ D T SRGFGFV +K E+ K +D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 226 HKTLGGRTIIVKLA 239
L G+ I K A
Sbjct: 62 EHKLNGKVIDPKRA 75
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K ES +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 61
Query: 135 SKLIDGRL 142
++G++
Sbjct: 62 EHKLNGKV 69
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
+++GGLSP+ E + +FG GE+E + D TN+ RGF F+T+K E KK ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 226 HKTLGGRTIIVKLA 239
+ +G +K+A
Sbjct: 62 YHNVGLSKCEIKVA 75
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
+FV GL+ +T E + F GE+E + D T K RG+ FIT+K E + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 58
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K ++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 13 KXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQ 72
Query: 225 PHKTLGGRTIIVKLA 239
L GR I K A
Sbjct: 73 KEHRLDGRVIDPKKA 87
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K FV GL+W+T+ + L F GE+ + + D TG+SRG+GFI +K S + L
Sbjct: 13 KXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLDQ 72
Query: 134 PSKLIDGRL 142
+DGR+
Sbjct: 73 KEHRLDGRV 81
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSA 130
+ +++V + + +T+ AF G I+ + +D T K +G+ F+ Y+ E+ Q A
Sbjct: 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA 86
Query: 131 L-RAPSKLIDGRLAVCNLACEGLSGV-SAVPDLAQ--------RKLYIGGLSPEVTTEVL 180
L + S ++ GR N+ S + A P + Q ++Y+ + +++ + +
Sbjct: 87 LEQMNSVMLGGR----NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDI 142
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLA 239
+ F G+I+ ++A D T + +G+GF+ Y+ ++++ AV + LGG+ + V A
Sbjct: 143 KSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202
Query: 240 DTHKGKPP 247
T PP
Sbjct: 203 VT----PP 206
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 49 SRLGSQYPSI---AEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVI 105
S +G P I AEE ++ +++V + + + + + + F G+I+ +
Sbjct: 106 SNIGQAQPIIDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLA 158
Query: 106 YDKATGKSRGYGFITYKHMESTQSALRA 133
D TGK +GYGFI Y+ +S+Q A+ +
Sbjct: 159 RDPTTGKHKGYGFIEYEKAQSSQDAVSS 186
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+ LFV + ++TT L F V+G I+ ++Y K +GK RGY FI Y+H SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 133 -APSKLIDGRLAVCNL 147
A K IDGR + ++
Sbjct: 163 HADGKKIDGRRVLVDV 178
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL+IGGL+ E ++L FG+HG I E + D+ T++SRGF F+T++ AK A D
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67
Query: 225 PH-KTLGGRTIIVKLA 239
+ K+L G+ I V+ A
Sbjct: 68 MNGKSLHGKAIKVEQA 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
KLF+ GL T + L A F HG I E +I D+ T KSRG+ FIT+++ ++A +
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+ LFV + ++TT L F V+G I+ ++Y K +GK RGY FI Y+H SA +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 133 -APSKLIDGR 141
A K IDGR
Sbjct: 163 HADGKKIDGR 172
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTY---KTVEAA 218
A + L++ ++ + T L F +G I+ + Y K + + RG+ F+ Y + + +A
Sbjct: 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Query: 219 KKAVDDPHKTLGGRTIIVKLADTHKGK 245
K D K + GR ++V D +G+
Sbjct: 161 YKHADG--KKIDGRRVLV---DVERGR 182
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVT-YKTVEAAKKAVDD 224
+++G LSPE+TTE + + F G+I + V D T +S+G+GFV+ Y ++A V
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
+ LGGR I A KPP
Sbjct: 78 GGQWLGGRQIRTNWATR---KPP 97
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFIT-YKHMESTQSA 130
H +FV L+ T+E + +AF G+I + V+ D ATGKS+GYGF++ Y +++ +
Sbjct: 15 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 74
Query: 131 LRAPSKLIDGRLAVCNLA 148
+ + + GR N A
Sbjct: 75 VHMGGQWLGGRQIRTNWA 92
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 90/179 (50%), Gaps = 15/179 (8%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL-R 132
+++V + + +T+ AF G I+ + +D T K +G+ F+ Y+ E+ Q AL +
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 133 APSKLIDGRLAVCNLACEGLSGVS-AVPDLAQ--------RKLYIGGLSPEVTTEVLLNF 183
S ++ GR N+ S + A P + Q ++Y+ + +++ + + +
Sbjct: 75 MNSVMLGGR----NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 130
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLADT 241
F G+I+ ++A D T + +G+GF+ Y+ ++++ AV + LGG+ + V A T
Sbjct: 131 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 49 SRLGSQYPSI---AEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVI 105
S +G P I AEE ++ +++V + + + + + + F G+I+ +
Sbjct: 91 SNIGQAQPIIDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 143
Query: 106 YDKATGKSRGYGFITYKHMESTQSAL 131
D TGK +GYGFI Y+ +S+Q A+
Sbjct: 144 RDPTTGKHKGYGFIEYEKAQSSQDAV 169
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 39/58 (67%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+++GGLS T E + ++F + G++++ + +DK TN RGFGFVT+++ + +K +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+FV GL+ NTT E + F G++++ +++DK T + RG+GF+T++ + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 135 SKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 62 FHEINNKMVECKKA 75
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 88/179 (49%), Gaps = 15/179 (8%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL-R 132
+++V + + +T+ AF G I+ +D T K +G+ F+ Y+ E+ Q AL +
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVS-AVPDLAQ--------RKLYIGGLSPEVTTEVLLNF 183
S + GR N+ S + A P + Q ++Y+ + +++ + + +
Sbjct: 74 XNSVXLGGR----NIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 129
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLADT 241
F G+I+ ++A D T + +G+GF+ Y+ ++++ AV + LGG+ + V A T
Sbjct: 130 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSXNLFDLGGQYLRVGKAVT 188
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 49 SRLGSQYPSI---AEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVI 105
S +G P I AEE ++ +++V + + + + + + F G+I+ +
Sbjct: 90 SNIGQAQPIIDQLAEEARAF-------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLA 142
Query: 106 YDKATGKSRGYGFITYKHMESTQSAL 131
D TGK +GYGFI Y+ +S+Q A+
Sbjct: 143 RDPTTGKHKGYGFIEYEKAQSSQDAV 168
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L V GL W TT + L F GE+ V D TG S+G+GF+ + E TQ + +
Sbjct: 18 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE-TQVKVMSQ 76
Query: 135 SKLIDGRLAVCNL 147
+IDGR C L
Sbjct: 77 RHMIDGRWCDCKL 89
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 151 GLSGVSAVPDLAQRK--LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFG 208
G SG S V Q+ L + GL + T + L +F GE+ V D T S+GFG
Sbjct: 1 GSSGSSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFG 60
Query: 209 FVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
FV + E K + H + GR KL ++ + +
Sbjct: 61 FVRFTEYETQVKVMSQRH-MIDGRWCDCKLPNSKQSQ 96
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD- 224
+++G LSPE+TTE + F G I + V D T +S+G+GFV++ A+ A+
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
+ LGGR I A KPP
Sbjct: 78 GGQWLGGRQIRTNWATR---KPP 97
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
H +FV L+ T+E + AAF G I + V+ D ATGKS+GYGF+++ + ++A+
Sbjct: 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 74
Query: 132 R 132
+
Sbjct: 75 Q 75
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG--KSRGYGFITY---KHMESTQ 128
K+FV + + + L F +G + E V+ D++ +S+G F+T+ K Q
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG 188
+AL K++ G + +AV D RKL+IG +S + T + F G
Sbjct: 77 NALHN-MKVLPGMHHPIQMKPADSEKNNAVED---RKLFIGMISKKCTENDIRVMFSSFG 132
Query: 189 EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--KTLGGRT--IIVKLAD 240
+IEE + D SRG FVT+ T A+ A+ H +T+ G + ++VK AD
Sbjct: 133 QIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 187
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTN--ESRGFGFVTYKTVE 216
PDL K+++G + + + L F ++G + E +V D+ N +S+G FVT+ T +
Sbjct: 11 PDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 70
Query: 217 AAKKAVDDPH--KTLGG--RTIIVKLADTHK 243
AA +A + H K L G I +K AD+ K
Sbjct: 71 AALEAQNALHNMKVLPGMHHPIQMKPADSEK 101
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ ++ T + F G+IEE ++ G SRG F+T+ Q+A++
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIK 166
Query: 133 A 133
A
Sbjct: 167 A 167
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME 125
SA P+ +L+V L +N T + L F G IE ++ D TG+S+GYGFIT+ E
Sbjct: 22 GSAGPM--RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 79
Query: 126 STQSAL 131
+ AL
Sbjct: 80 CAKKAL 85
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+LY+G L +T ++L F G IE + D +T S+G+GF+T+ E AKKA++
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG--KSRGYGFITY---KHMESTQ 128
K+FV + + + L F +G + E V+ D++ +S+G F+T+ K Q
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG 188
+AL K++ G + +AV D RKL+IG +S + T + F G
Sbjct: 65 NALHN-MKVLPGMHHPIQMKPADSEKNNAVED---RKLFIGMISKKCTENDIRVMFSSFG 120
Query: 189 EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--KTLGGRT--IIVKLAD 240
+IEE + D SRG FVT+ T A+ A+ H +T+ G + ++VK AD
Sbjct: 121 QIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ ++ T + F G+IEE ++ G SRG F+T+ Q+A++
Sbjct: 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIK 154
Query: 133 A 133
A
Sbjct: 155 A 155
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG A PD L + GLS T L F ++G I + S+ YD+ + SRGF FV
Sbjct: 4 GSSGNRANPD-PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 62
Query: 211 TYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGKPPQT 249
++ V+ AK+A + + L GR I V + T K P T
Sbjct: 63 YFENVDDAKEAKERANGMELDGRRIRVDFSIT---KRPHT 99
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL-RA 133
L V GL+ TT L F +G I + +++YD+ + +SRG+ F+ +++++ + A RA
Sbjct: 18 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77
Query: 134 PSKLIDGR 141
+DGR
Sbjct: 78 NGMELDGR 85
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RK+ +RGL + T++ VH + + + Y K +G F+T + E ++A+
Sbjct: 23 RKILIRGLPGDVTNQ------EVHDLLSDYELKY-CFVDKYKGTAFVTLLNGEQAEAAIN 75
Query: 133 A--PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
A S+L + L+V L A+ L + L P +T + G +
Sbjct: 76 AFHQSRLRERELSV------QLQPTDAL-------LCVANLPPSLTQQQFEELVRPFGSL 122
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKP 246
E + Y + T +S+G+GF Y ++A +A D K LG RT+ V D + P
Sbjct: 123 ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 179
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P L V L + T + R G +E ++Y + TG+S+GYGF Y + S
Sbjct: 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD---S 149
Query: 130 ALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQ-RKLYIGGLSPEVT-TEVLLNFFGRH 187
A RA S L+ L L P L R L + L P + L
Sbjct: 150 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 209
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLA 239
+A +D + +GF + Y+T E A++A +LGG + V
Sbjct: 210 HSPTFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RK+ +RGL + T++ VH + + + Y K +G F+T + E ++A+
Sbjct: 23 RKILIRGLPGDVTNQ------EVHDLLSDYELKY-CFVDKYKGTAFVTLLNGEQAEAAIN 75
Query: 133 A--PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
A S+L + L+V L A+ L + L P +T + G +
Sbjct: 76 AFHQSRLRERELSV------QLQPTDAL-------LCVANLPPSLTQQQFEELVRPFGSL 122
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKP 246
E + Y + T +S+G+GF Y ++A +A D K LG RT+ V D + P
Sbjct: 123 ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 179
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P L V L + T + R G +E ++Y + TG+S+GYGF Y + S
Sbjct: 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD---S 149
Query: 130 ALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQ-RKLYIGGLSPEVT-TEVLLNFFGRH 187
A RA S L+ L L P L R L + L P + L
Sbjct: 150 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 209
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLA 239
+A +D + +GF + Y+T E A++A +LGG + V
Sbjct: 210 HSPTFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RK+ +RGL + T++ VH + + + Y K +G F+T + E ++A+
Sbjct: 21 RKILIRGLPGDVTNQ------EVHDLLSDYELKY-CFVDKYKGTAFVTLLNGEQAEAAIN 73
Query: 133 A--PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
A S+L + L+V L A+ L + L P +T + G +
Sbjct: 74 AFHQSRLRERELSV------QLQPTDAL-------LCVANLPPSLTQQQFEELVRPFGSL 120
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKP 246
E + Y + T +S+G+GF Y ++A +A D K LG RT+ V D + P
Sbjct: 121 ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP 177
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P L V L + T + R G +E ++Y + TG+S+GYGF Y + S
Sbjct: 91 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD---S 147
Query: 130 ALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQ-RKLYIGGLSPEVT-TEVLLNFFGRH 187
A RA S L+ L L P L R L + L P + L
Sbjct: 148 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 207
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLA 239
+A +D + +GF + Y+T E A++A +LGG + V
Sbjct: 208 HSPTFCQLACGQD-GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 259
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
+ D R +FV + + T E L F G + ++YD+ TGK +GYGF Y+ E+
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 127 TQSALRA-PSKLIDGR-LAVCNLACE 150
SA+R + GR L V N A E
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASE 88
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
D + R +++G + E T E L + F G + + YD++T + +G+GF Y+ E A
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64
Query: 220 KAVDDPH-KTLGGRTIIVKLADTHKGK 245
A+ + + + GR + V A + K K
Sbjct: 65 SAMRNLNGREFSGRALRVDNAASEKNK 91
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG A PD L + GLS T L F ++G I + S+ YD+ + SRGF FV
Sbjct: 4 GSSGNRANPD-PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 62
Query: 211 TYKTVEAAKKAVDDPHKT-LGGRTIIV 236
++ V+ AK+A + + L GR I V
Sbjct: 63 YFENVDDAKEAKERANGMELDGRRIRV 89
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL-RA 133
L V GL+ TT L F +G I + +++YD+ + +SRG+ F+ +++++ + A RA
Sbjct: 18 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77
Query: 134 PSKLIDGR 141
+DGR
Sbjct: 78 NGMELDGR 85
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
L + GLS T L F ++G I + S+ YD+ + SRGF FV ++ V+ AK+A +
Sbjct: 49 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 108
Query: 226 HKT-LGGRTIIVKLADTHK 243
+ L GR I V + T +
Sbjct: 109 NGMELDGRRIRVDFSITKR 127
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G Q + + + A+ DP + L V GL+ TT L F +G I + +++YD+ +
Sbjct: 27 GQQMGRGSRHVGNRANPDP-NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR 85
Query: 112 KSRGYGFITYKHMESTQSAL-RAPSKLIDGR 141
+SRG+ F+ +++++ + A RA +DGR
Sbjct: 86 RSRGFAFVYFENVDDAKEAKERANGMELDGR 116
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
LYI GL P T + L+ +G+I DK TN+ +G+GFV + + AA+KAV
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 64
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
L++RGL TT + L + +G+I I DK T K +GYGF+ + + Q A+ A
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66
>pdb|3MD1|A Chain A, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
pdb|3MD1|B Chain B, Crystal Structure Of The Second Rrm Domain Of Yeast
Poly(U)-Binding Protein (Pub1)
Length = 83
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
LFV L N ETL AF+ G V++D TG SRGYGF+++ + Q+A+
Sbjct: 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
L++G L+ V E L N F G V +D T SRG+GFV++ + + A+ A+D
Sbjct: 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63
Query: 226 H-KTLGGRTIIVKLA 239
+ L GR + + A
Sbjct: 64 QGQDLNGRPLRINWA 78
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
LY+G L +T ++L F G+I+ + D DT S+G+GF+T+ E A++A++
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
L+V L +N T + L F G+I+ ++ D TG+S+GYGFIT+ E + AL
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRAL 64
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG P + RKL++G L+ + + + + F G IEE ++ D N S+G FV
Sbjct: 4 GSSGCLRQPP-SHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFV 61
Query: 211 TYKTVEAAKKAVDDPH--KTLGG--RTIIVKLADTHKGKPPQT 249
Y + A+ A++ H +T+ G +++VK ADT K P +
Sbjct: 62 KYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKESGPSS 104
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P HRKLFV L + + + F G IEE I G S+G F+ Y Q+
Sbjct: 13 PSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEE-CTILRGPDGNSKGCAFVKYSSHAEAQA 71
Query: 130 ALRA 133
A+ A
Sbjct: 72 AINA 75
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
L + GLS T L F ++G I + S+ YD+ + SRGF FV ++ V+ AK+A +
Sbjct: 15 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 74
Query: 226 HKT-LGGRTIIVKLADTHK 243
+ L GR I V + T +
Sbjct: 75 NGMELDGRRIRVDFSITKR 93
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+ S A+ DP + L V GL+ TT L F +G I + +++YD+ + +SRG+ F+ +
Sbjct: 3 LGSRANPDP-NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 61
Query: 122 KHMESTQSAL-RAPSKLIDGR 141
++++ + A RA +DGR
Sbjct: 62 ENVDDAKEAKERANGMELDGR 82
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In Trinucleotide
Repeat Containing 4 Variant
Length = 102
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL++G L + T E + F G I+E +V D S+G FV ++T A+ A++
Sbjct: 13 RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAIN 71
Query: 224 DPH--KTLGG--RTIIVKLADTHKGKPPQT 249
H +TL G +++VK ADT K P +
Sbjct: 72 TLHSSRTLPGASSSLVVKFADTEKESGPSS 101
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GG+ L +F + G + E + YD + RGFGF+T++ ++ +AV+
Sbjct: 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 71
Query: 225 PHKTLGGRTIIVKLADTHKGK 245
+ G+ + VK A+ K
Sbjct: 72 HFHDIMGKKVEVKRAEPRDSK 92
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
K+FV G+ N L F+ G + E +IYD + RG+GFIT++ +S A+
Sbjct: 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+LFV L + T E F +GE E + D RG+GFI +ES A A
Sbjct: 24 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFI---RLESRTLAEIA 74
Query: 134 PSKL----IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189
++L + R A G + L + LSP V+ E+L F + G
Sbjct: 75 KAELDGTILKSRPLRIRFATHGAA------------LTVKNLSPVVSNELLEQAFSQFGP 122
Query: 190 IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+E+ V D D + G GFV + A+KA++
Sbjct: 123 VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
LY+ L +T + L FG++G I + ++ DK T RG FV Y E A++A+
Sbjct: 16 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 75
Query: 226 HKTL---GGRTIIVKLADTH 242
+ + G + + V+LA+ H
Sbjct: 76 NNVIPEGGSQPLSVRLAEEH 95
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L+V L T + L F +G I + ++ DK TG+ RG F+ Y E Q A+ A
Sbjct: 16 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 75
Query: 135 SKLI 138
+ +I
Sbjct: 76 NNVI 79
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG--KSRGYGFITY---KHMESTQ 128
K FV + + + L F +G + E V+ D++ +S+G F+T+ K Q
Sbjct: 5 KXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG 188
+AL K++ G +AV D RKL+IG +S + T + F G
Sbjct: 65 NALHN-XKVLPGXHHPIQXKPADSEKNNAVED---RKLFIGXISKKCTENDIRVXFSSFG 120
Query: 189 EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--KTLGGRT--IIVKLAD 240
+IEE + D SRG FVT+ T A+ A+ H +T G + +VK AD
Sbjct: 121 QIEECRILRGPD-GLSRGCAFVTFTTRAXAQTAIKAXHQAQTXEGCSSPXVVKFAD 175
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ ++ T + F G+IEE ++ G SRG F+T+ Q+A++
Sbjct: 96 RKLFIGXISKKCTENDIRVXFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAXAQTAIK 154
Query: 133 A 133
A
Sbjct: 155 A 155
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+ LFV+GL+ +TT ETL +F G + ++ D+ TG S+G+GF+ + E ++A
Sbjct: 16 KTLFVKGLSEDTTEETLKESF--DGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 72
Query: 133 A 133
A
Sbjct: 73 A 73
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 151 GLSGVSAVPDLAQ--RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFG 208
G SG S +Q + L++ GLS + T E L F G + + D++T S+GFG
Sbjct: 1 GSSGSSGPNARSQPSKTLFVKGLSEDTTEETLKESF--DGSVR-ARIVTDRETGSSKGFG 57
Query: 209 FVTYKTVE---AAKKAVDD 224
FV + + E AAK+A++D
Sbjct: 58 FVDFNSEEDAKAAKEAMED 76
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 158 VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
+P R LYI L ++T E + + FG++G I + V +T E+RG +V Y+ +
Sbjct: 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFD 59
Query: 218 AKKAVD 223
AK AVD
Sbjct: 60 AKNAVD 65
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAA 218
PD+ R L + + V L F R+G IE + D++T +SRG+GFV +++ +A
Sbjct: 39 PDVL-RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 219 KKAV 222
++A+
Sbjct: 98 QQAI 101
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSA 130
V R L V + L F +G IE ++ D+ T +SRGYGF+ ++ S Q A
Sbjct: 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
Query: 131 LRAPS--KLIDGRLAVCNLACEG 151
+ + +++ RL V LA G
Sbjct: 101 IAGLNGFNILNKRLKVA-LAASG 122
>pdb|2DNH|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 5
Rna Binding Protein
Length = 105
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL++G L+ + + E +L F G I+E +V D S+G FV + + A+ A+
Sbjct: 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIH 74
Query: 224 DPH--KTLGG--RTIIVKLADTHKGKPPQT 249
H +T+ G +++VK ADT K P +
Sbjct: 75 ALHGSQTMPGASSSLVVKFADTDKESGPSS 104
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY---KHME- 125
P L V L N T + L + F GE+E +I DK G S GYGF+ Y K E
Sbjct: 2 PGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 61
Query: 126 --STQSALRAPSKLI 138
+T + LR SK I
Sbjct: 62 AINTLNGLRLQSKTI 76
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L + L +T + L + F GE+E + DK S G+GFV Y T + A++A++
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 64
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
R +Y+G L T+E + F + G++ + YD++T + +GFGFV + ++
Sbjct: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAK 61
Query: 224 DPHKTLGGRTIIVKLADTHK 243
+ GRTI V A+ K
Sbjct: 62 LDNTDFMGRTIRVTEANPKK 81
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R ++V L ++ TSE + F G++ +IYD+ T K +G+GF+ + ES A+
Sbjct: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAI 59
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 15/154 (9%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L+V L + T L F G I V D T +S GY ++ ++ + AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 135 S-KLIDGRLAVCNLACEG----LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189
+ +I G+ + SGV ++I L + + L + F G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVG--------NIFIKNLDKSIDNKALYDTFSAFGN 124
Query: 190 IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
I V D+ N S+G+GFV ++T EAA++A++
Sbjct: 125 ILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 156
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 157 AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVE 216
+ P LY+G L P+VT +L F G I V D T S G+ +V ++
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 217 AAKKAVD 223
A++A+D
Sbjct: 64 DAERALD 70
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQ 128
+P R +++ + ++ T E + G + +++D TG+S+GY FI ++ +ES+
Sbjct: 1 NPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSA 60
Query: 129 SALR 132
SA+R
Sbjct: 61 SAVR 64
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
R +Y+G + + T E +L+ G + + +D T S+G+ F+ ++ +E++ AV
Sbjct: 5 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 63
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 158 VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
+P R LYI L ++T E + + FG++G I + V +T E+RG +V Y+ +
Sbjct: 7 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFD 63
Query: 218 AKKAVD 223
AK A D
Sbjct: 64 AKNACD 69
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG S + D KL+IG + + + L F G+I E +V D+ T +G F+
Sbjct: 1 GSSGSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFL 60
Query: 211 TYKTVEAAKKAVDDPH--KTLGG--RTIIVKLAD 240
TY E+A KA H KTL G R I VK AD
Sbjct: 61 TYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLF+ + N + L F G+I E V+ D+ TG +G F+TY E SAL+A
Sbjct: 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERE---SALKA 71
Query: 134 PSKL 137
S L
Sbjct: 72 QSAL 75
>pdb|2LEA|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm
pdb|2LEB|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uccagu-3'
pdb|2LEC|A Chain A, Solution Structure Of Human Srsf2 (Sc35) Rrm In Complex
With 5'- Uggagu-3'
Length = 135
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 159 PDL-AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
PD+ L + L+ + + L F ++G + + + D+ T ESRGF FV +
Sbjct: 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 101
Query: 218 AKKAVDD-PHKTLGGRTIIVKLADTHKGKPPQTQ 250
A+ A+D L GR + V++A G+PP +
Sbjct: 102 AEDAMDAMDGAVLDGRELRVQMA--RYGRPPDSH 133
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
L V L + T+ +TL F +G + + + D+ T +SRG+ F+ + + A+ A
Sbjct: 50 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 109
Query: 134 PSKLIDGR 141
++DGR
Sbjct: 110 DGAVLDGR 117
>pdb|2KN4|A Chain A, The Structure Of The Rrm Domain Of Sc35
Length = 158
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD- 224
L + L+ + + L F ++G + + + D+ T ESRGF FV + A+ A+D
Sbjct: 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 132
Query: 225 PHKTLGGRTIIVKLADTHKGKPPQTQ 250
L GR + V++A G+PP +
Sbjct: 133 DGAVLDGRELRVQMA--RYGRPPDSH 156
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA- 133
L V L + T+ +TL F +G + + + D+ T +SRG+ F+ + + A+ A
Sbjct: 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 132
Query: 134 PSKLIDGR 141
++DGR
Sbjct: 133 DGAVLDGR 140
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY---KHME---STQ 128
L V L N T + L + F GE+E +I DK G S GYGF+ Y K E +T
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 129 SALRAPSKLI 138
+ LR SK I
Sbjct: 82 NGLRLQSKTI 91
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
L + L T + L + F GE+E + DK S G+GFV Y T + A++A++
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-- 79
Query: 226 HKTLGGRTIIVKLADTHKGKP 246
TL G + K +P
Sbjct: 80 --TLNGLRLQSKTIKVSYARP 98
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
L+V L + T L F G I V D T +S GY ++ ++ + AL
Sbjct: 18 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77
Query: 135 S-KLIDGRLAVCNLACEGLSGVSAVPDLAQRK-----LYIGGLSPEVTTEVLLNFFGRHG 188
+ +I G+ + D + RK ++I L + + L + F G
Sbjct: 78 NFDVIKGKPVRIMWSQR---------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 128
Query: 189 EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
I V D+ N S+G+GFV ++T EAA++A++
Sbjct: 129 NILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 161
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 157 AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVE 216
+ P LY+G L P+VT +L F G I V D T S G+ +V ++
Sbjct: 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68
Query: 217 AAKKAVD 223
A++A+D
Sbjct: 69 DAERALD 75
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 158 VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
+P R LYI L ++T E + + FG++G I + V +T E+RG +V Y+ +
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFD 69
Query: 218 AKKAVD 223
AK A D
Sbjct: 70 AKNACD 75
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEI-EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
++IG L PE+ ++L + F G I + + D DT S+G+ F+ + + +A+ A++
Sbjct: 8 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67
Query: 225 PH-KTLGGRTIIVKLA--DTHKGKPPQT 249
+ + L R I V A KG P +
Sbjct: 68 MNGQYLCNRPITVSYAFKKDSKGSGPSS 95
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
++ L + L +T + + FG G+IE + DK T +S G+GFV Y A KA
Sbjct: 3 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 62
Query: 222 VDDPHKTLGGRTIIVKLADTHKGKP 246
++ TL G + K +P
Sbjct: 63 IN----TLNGLKLQTKTIKVSYARP 83
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
L V L N T + + F G+IE ++ DK TG+S GYGF+ Y A+
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R ++V + + T+E L A F G + ++ DK +G +G+ +I + ES +++L
Sbjct: 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66
Query: 133 APSKLIDGR 141
L GR
Sbjct: 67 LDESLFRGR 75
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
R +Y+G + T E L F G + ++ DK + +GF ++ + E+ + ++
Sbjct: 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66
Query: 224 DPHKTLGGRTIIV 236
GR I V
Sbjct: 67 LDESLFRGRQIKV 79
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R +++ + ++ T E + G + +++D TG+S+GY FI ++ +ES+ SA+R
Sbjct: 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
R +Y+G + + T E +L+ G + + +D T S+G+ F+ ++ +E++ AV
Sbjct: 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 61
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R ++V + + T+E L A F G + ++ DK +G +G+ +I + ES +++L
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 65
Query: 133 APSKLIDGR 141
L GR
Sbjct: 66 LDESLFRGR 74
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
R +Y+G + T E L F G + ++ DK + +GF ++ + E+ + ++
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 65
Query: 224 DPHKTLGGRTIIV 236
GR I V
Sbjct: 66 LDESLFRGRQIKV 78
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
R +++ + ++ T E + G + +++D TG+S+GY FI ++ +ES+ SA+R
Sbjct: 4 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 63
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
R +Y+G + + T E +L+ G + + +D T S+G+ F+ ++ +E++ AV
Sbjct: 4 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 62
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 158 VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217
+P R L I L ++T E + + FG++G I + V +T E+RG +V Y+ +
Sbjct: 13 LPPEVNRILMIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFD 69
Query: 218 AKKAVD 223
AK A D
Sbjct: 70 AKNACD 75
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK-- 219
++ +Y+ L +T L F ++G++ + ++ DKDT +S+G F+ + ++A+
Sbjct: 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 74
Query: 220 -KAVDDPHKTLGGRTIIVKLA 239
+A+++ K L GR I +A
Sbjct: 75 TRAINN--KQLFGRVIKASIA 93
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 26/154 (16%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+LFV L + T E + F +G+ E + DK G+GFI +E+ A A
Sbjct: 24 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFI---RLETRTLAEIA 74
Query: 134 PSKL----IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189
+L + G+ AC S L + L V+ E+L F G+
Sbjct: 75 KVELDNMPLRGKQLRVRFACHSAS------------LTVRNLPQYVSNELLEEAFSVFGQ 122
Query: 190 IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+E V D D G G V + AA+KA+D
Sbjct: 123 VERAVVIVD-DRGRPSGKGIVEFSGKPAARKALD 155
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT---VEAAKKA 221
+L++G L P++T E + F ++G+ G V KD +GFGF+ +T E AK
Sbjct: 24 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKD----KGFGFIRLETRTLAEIAKVE 77
Query: 222 VDDPHKTLGGRTIIVKLA 239
+D+ L G+ + V+ A
Sbjct: 78 LDN--MPLRGKQLRVRFA 93
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 298
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 689 VGSCTLKKTNTILAYL---NVGKKRLCEYIQENP--LELKKLALGSRVG------RLPAE 737
+ S L+ T +AYL N K + + +++ P L L +R+G L +
Sbjct: 96 IFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVK 155
Query: 738 KERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIR 797
K R ++R LL G +E E K + + G ++ MI
Sbjct: 156 KTRDLVVRLPRLL-TGSLEPVKENMKVYR----------------LELGFKHNEIQHMIT 198
Query: 798 VSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWL 852
P++L K + DF+ N + P +V FP FN ++K R L +L
Sbjct: 199 RIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYL 253
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHME-STQSALR 132
+LFVR L++ ++ E L F +G + E D T K +G+ F+T+ E + ++
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 133 APSKLIDGRL 142
++ GR+
Sbjct: 70 VDGQVFQGRM 79
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
+L++ LS + E L F +G + E D T + +GF FVT+ E A KA
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKK 220
L ++I L + + L + F G I V D+ N S+G+GFV ++T EAA++
Sbjct: 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 60
Query: 221 AVD 223
A++
Sbjct: 61 AIE 63
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F++ L + ++ L F G I V+ D+ S+GYGF+ H E+ ++A RA
Sbjct: 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV---HFETQEAAERAI 62
Query: 135 SKL 137
K+
Sbjct: 63 EKM 65
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGK---SRGYGFITYKHMESTQSAL 131
LF++ L ++TT ETL F G I+ + K S G+GF+ YK E Q AL
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
Query: 132 R 132
+
Sbjct: 68 K 68
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNE---SRGFGFVTYKTVEAAKKAV 222
L+I L+ T E L F + G I+ +++ K+ S GFGFV YK E A+KA+
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
Query: 223 DDPHKTLGGRTIIVKLADTHK 243
K L G T+ D HK
Sbjct: 68 ----KQLQGHTV-----DGHK 79
>pdb|2M2B|A Chain A, Nmr Structure Of The Rrm2 Domain Of The Protein Rbm10 From
Homo Sapiens
Length = 131
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 147 LACEGLS-GVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAY--DKDTNE 203
LA + LS G + A + + L+P T + +L + + +V DK T
Sbjct: 6 LASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQL 65
Query: 204 SRGFGFVTYKTVEAAK-----KAVDDPHKTLGGRTIIVKLADTHK 243
+RGF F+ T+EAA+ +A+ P T+ G+TI V+ A K
Sbjct: 66 NRGFAFIQLSTIEAAQLLQILQALHPP-LTIDGKTINVEFAKGSK 109
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain (Rbd2)
Of Hu Antigen C (Huc)
Length = 85
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
L+V GL + + + F +G I ++ D+ATG SRG GFI + + A++
Sbjct: 4 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 62
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD-- 223
LY+ GL ++ + + F ++G I + D+ T SRG GF+ + A++A+
Sbjct: 4 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 63
Query: 224 DPHKTLG-GRTIIVKLAD 240
+ K LG I VK A+
Sbjct: 64 NGQKPLGAAEPITVKFAN 81
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 270
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 689 VGSCTLKKTNTILAYL---NVGKKRLCEYIQENP--LELKKLALGSRVG------RLPAE 737
+ S L+ T +AYL N K + + +++ P L L +R+G L +
Sbjct: 68 IFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVK 127
Query: 738 KERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIR 797
K R ++R LL G +E E K + + G ++ MI
Sbjct: 128 KTRDLVVRLPRLL-TGSLEPVKENMKVYR----------------LELGFKHNEIQHMIT 170
Query: 798 VSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWL 852
P++L K + DF+ N + P +V FP FN ++K R L +L
Sbjct: 171 RIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYL 225
>pdb|3BS9|A Chain A, X-Ray Structure Of Human Tia-1 Rrm2
pdb|3BS9|B Chain B, X-Ray Structure Of Human Tia-1 Rrm2
Length = 87
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD- 224
+++G LSPE+TT + F G I + V D T +S+G+GFV++ A+ A+
Sbjct: 9 VFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68
Query: 225 PHKTLGGRTI 234
+ LGGR I
Sbjct: 69 GGQWLGGRQI 78
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 97 GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
G I + V+ D ATGKS+GYGF+++ + ++A++
Sbjct: 31 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 66
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
L+I L E + LL F G + V DK TN S+ FGFV+Y +A+ A+
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 84
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P LF+ L + L F G + V DK T S+ +GF++Y + S Q+
Sbjct: 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 82
Query: 130 ALRA 133
A+++
Sbjct: 83 AIQS 86
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 151 GLSGVSAVPD--LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS--------VAYDKD 200
G SG S PD +Y+ GL+ VT + L +FF + G ++ + DK+
Sbjct: 1 GSSGSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE 60
Query: 201 TNESRGFGFVTYKTVEAAKKAVD-DPHKTLGGRTIIVKLADTHKGKPP 247
T + +G V+Y+ AK AV+ K G + V LA + KPP
Sbjct: 61 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA---RKKPP 105
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
++I L + + L + F G I V D+ N S+G+GFV ++T EAA++A++
Sbjct: 14 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIE 69
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 68 ADPVHRK-----LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
ADP RK +F++ L + ++ L F G I V+ D+ S+GYGF+
Sbjct: 2 ADPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV--- 56
Query: 123 HMESTQSALRAPSKL 137
H E+ ++A RA K+
Sbjct: 57 HFETQEAAERAIEKM 71
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+Y+GGL +V+ +L F + G + + D+ T + +G+GFV + + E A A+
Sbjct: 18 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
++V GL + L F G + + D+ TG+ +GYGF+ + E A++
Sbjct: 18 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 75
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 67
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 83
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 82
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAA 218
P + LY+ LSP VT L++ F R E + + + T RG F+T+ E A
Sbjct: 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 80
Query: 219 KKAVD--DPHKTLGGRTIIVKLADTHK 243
+A+ + +K L G+ ++++ K
Sbjct: 81 WQALHLVNGYK-LYGKILVIEFGKNKK 106
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 57 SIAEEIKSV---ASADP--VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
S EEI+ + +S +P ++ L+++ L+ T L + F E + + + TG
Sbjct: 5 SSGEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTG 64
Query: 112 KSRGYGFITYKHMESTQSAL 131
+ RG FIT+ + E AL
Sbjct: 65 RMRGQAFITFPNKEIAWQAL 84
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+++GG+ + + +FF R+G ++E + D+ T S+G+GFV++ +K V+
Sbjct: 13 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 69
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+FV G+ + + F +G ++E +I D+ TG S+GYGF+++
Sbjct: 13 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 58
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+++GG+ + + +FF R+G ++E + D+ T S+G+GFV++ +K V+
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+FV G+ + + F +G ++E +I D+ TG S+GYGF+++
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 57
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
+++GG+ + + +FF R+G ++E + D+ T S+G+GFV++ +K V+
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+FV G+ + + F +G ++E +I D+ TG S+GYGF+++
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 57
>pdb|2DNG|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 4h
Length = 103
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 151 GLSGVSA--VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFG 208
G SG S +P Y+G L P T + ++ + I + DKDT++ +GF
Sbjct: 1 GSSGSSGKELPTEPPYTAYVGNL-PFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFC 59
Query: 209 FVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHK 243
+V + V++ K+A+ LG R++ V +A+ K
Sbjct: 60 YVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRK 94
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 77 VRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS 135
V L+ +T L FR G I + DK TG+S+G+ FI++ E A+ S
Sbjct: 20 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 168 IGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+ LS + L F G I +A DK T +S+GF F+++ E A +A+
Sbjct: 20 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 74
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT---VEAAKKA 221
+L++G L P++T E + F ++G+ G V KD +GFGF+ +T E AK
Sbjct: 17 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKD----KGFGFIRLETRTLAEIAKVE 70
Query: 222 VDDPHKTLGGRTIIVKLA 239
+D+ L G+ + V+ A
Sbjct: 71 LDN--MPLRGKQLRVRFA 86
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
LY+G LS T E + F + G+I++ + DK + GF FV Y + A+ A+
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
L+V L++ TT E + F G+I++ + DK + G+ F+ Y ++A+R
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 53 SQYPSI-AEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
S+ PS+ + S D H KLF+ GL + + G ++ ++ D ATG
Sbjct: 95 SENPSVYVPGVVSTVVPDSAH-KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 153
Query: 112 KSRGYGFITYKHMESTQSAL 131
S+GY F Y + T A+
Sbjct: 154 LSKGYAFCEYVDINVTDQAI 173
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 73 RKLFVRGLAWNTTSETLC----AAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMEST 127
R+L+V + + T E + A R+ G + G + + + + F+ ++ ++ T
Sbjct: 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64
Query: 128 QSALRAPSKLIDGRLAVCNLACE-----GLS--------GV--SAVPDLAQRKLYIGGLS 172
A+ + G+ + G+S GV + VPD A KL+IGGL
Sbjct: 65 TQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAH-KLFIGGLP 123
Query: 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG 231
+ + + G ++ ++ D T S+G+ F Y + +A+ + LG
Sbjct: 124 NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183
Query: 232 RTIIVKLA 239
+ ++V+ A
Sbjct: 184 KKLLVQRA 191
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
A R +++G L V E+L F + G + + ++ D++ + + FGFV +K E+ A
Sbjct: 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYA 73
Query: 222 V 222
+
Sbjct: 74 I 74
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
R +FV L E L F G + + + D+ GK + +GF+ +KH ES A+
Sbjct: 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAI 74
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 12/173 (6%)
Query: 73 RKLFVRGLAWNTTSETLC----AAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMEST 127
R+L+V + + T E + A R+ G + G + + + + F+ ++ ++ T
Sbjct: 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 64
Query: 128 QSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRH 187
A+ + G+ +L +P KL+IGGL + + +
Sbjct: 65 TQAMAFDGIIFQGQ----SLKIRRPHDYQPLP--GAHKLFIGGLPNYLNDDQVKELLTSF 118
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239
G ++ ++ D T S+G+ F Y + +A+ + LG + ++V+ A
Sbjct: 119 GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P KLF+ GL + + G ++ ++ D ATG S+GY F Y + T
Sbjct: 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151
Query: 130 AL 131
A+
Sbjct: 152 AI 153
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 72/173 (41%), Gaps = 12/173 (6%)
Query: 73 RKLFVRGLAWNTTSETLC----AAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMEST 127
R+L+V + + T E + A R+ G + G + + + + F+ ++ ++ T
Sbjct: 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 66
Query: 128 QSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRH 187
A+ + G+ +L +P KL+IGGL + + +
Sbjct: 67 TQAMAFDGIIFQGQ----SLKIRRPHDYQPLP--GAHKLFIGGLPNYLNDDQVKELLTSF 120
Query: 188 GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239
G ++ ++ D T S+G+ F Y + +A+ + LG + ++V+ A
Sbjct: 121 GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 173
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQS 129
P KLF+ GL + + G ++ ++ D ATG S+GY F Y + T
Sbjct: 94 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 153
Query: 130 AL 131
A+
Sbjct: 154 AI 155
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
L V L + T L A FR G I ++ D TG S GY F+ + +Q A++
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 67
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 67
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 68
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
LFV G+ T E + F +GEI+ + D+ TG +GY + Y+ + Q+A+
Sbjct: 12 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 70
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
L++ G+ E T E + + F +GEI+ + D+ T +G+ V Y+T + A+ A++
Sbjct: 12 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 69
>pdb|2DHG|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
In Trna Selenocysteine Associated Protein
Length = 104
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR-HGEIEEGSVAYDKDTNESRGFGF 209
G SG S + L++G L+P+V +L FF + + G V D+ T S+G+GF
Sbjct: 1 GSSGSSG----PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGF 55
Query: 210 VTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V + K+A+ + +G + V+L+
Sbjct: 56 VKFTDELEQKRALTECQGAVGLGSKPVRLS 85
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225
LY+ L + E L F G I V + S+GFGFV + + E A KAV +
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE- 74
Query: 226 HKTLGGRTIIVK 237
+ GR + K
Sbjct: 75 ---MNGRIVATK 83
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+ L + L+++ T ETL F I+ + GKS+GY FI + E + AL
Sbjct: 16 KTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALN 71
Query: 133 APSKL-IDGR 141
+ +K I+GR
Sbjct: 72 SCNKREIEGR 81
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu Rna
Length = 88
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTN--ESRGFGFVTYKTVEAAKKAV 222
K+++G + + + L F ++G + E +V D+ N +S+G FVT+ T +AA +A
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 223 DDPH--KTLGG--RTIIVKLADT 241
+ H K L G I +K AD+
Sbjct: 65 NALHNMKVLPGMHHPIQMKPADS 87
>pdb|2DNL|A Chain A, Solution Structure Of Rna Binding Domain In Cytoplasmic
Polyadenylation Element Binding Protein 3
Length = 114
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYD---KATGKS----RGYGFITYKHME 125
RK+FV GL + + + A+FR G + + D KA KS +GY F+ ++
Sbjct: 9 RKVFVGGLPPDIDEDEITASFRRFGPL-----VVDWPHKAESKSYFPPKGYAFLLFQEES 63
Query: 126 STQSALRAPSKLIDGRLAVC 145
S Q+ + A + DG+L +C
Sbjct: 64 SVQALIDACLEE-DGKLYLC 82
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGE--IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
RK+++GGL P++ + + F R G ++ A K +G+ F+ ++ E++ +A
Sbjct: 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQE-ESSVQA 67
Query: 222 VDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
+ D G+ + + T K KP Q +
Sbjct: 68 LIDACLEEDGKLYLCVSSPTIKDKPVQIR 96
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKH-MESTQSALR 132
KLF+ GL ++ T E L + HG +++ ++ ++A GK +G ++ Y++ +++Q+ ++
Sbjct: 19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA-GKPKGLAYVEYENESQASQAVMK 77
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 151 GLSGVSAV----PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206
G SG S V L + KL+I GL T E L HG +++ + ++ + +G
Sbjct: 1 GSSGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKG 59
Query: 207 FGFVTYKTVEAAKKAVDDPHKTLGGRTI---IVKLADTHKG 244
+V Y+ A +AV + G TI I+K+A ++ G
Sbjct: 60 LAYVEYENESQASQAV----MKMDGMTIKENIIKVAISNSG 96
>pdb|2CQH|A Chain A, Solution Structure Of The Rna Binding Domain Of Igf-Ii
Mrna- Binding Protein 2
Length = 93
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG S + KLYIG LSP VT + L FG G V G+ FV
Sbjct: 1 GSSGSSGM-----NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFV 49
Query: 211 TYKTVEAAKKAVDDPHKTLGGR 232
Y A +A++ TL G+
Sbjct: 50 DYPDQNWAIRAIE----TLSGK 67
>pdb|2HZC|A Chain A, Crystal Structure Of The N-terminal Rrm Of The U2af Large
Subunit
Length = 87
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 159 PDLAQRKLYIGGLSPEVTTEVLLNFFG---RHGEIEE--GSVAYDKDTNESRGFGFVTYK 213
P + R+LY+G + +T E +++FF R G + + G+ N+ + F F+ ++
Sbjct: 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR 61
Query: 214 TVEAAKKAV 222
+V+ +A+
Sbjct: 62 SVDETTQAM 70
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 40/82 (48%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
R ++ L+ + L +FF G++ + + D+++ S+G +V + +++ A+
Sbjct: 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85
Query: 224 DPHKTLGGRTIIVKLADTHKGK 245
+ L G IIV+ + K +
Sbjct: 86 LTGQRLLGVPIIVQASQAEKNR 107
>pdb|1U2F|A Chain A, Solution Structure Of The First Rna-Binding Domain Of
Hu2af65
Length = 90
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFG---RHGEIEE--GSVAYDKDTNESRGFGFVTYKTVEAA 218
R+LY+G + +T E +++FF R G + + G+ N+ + F F+ +++V+
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 61
Query: 219 KKAV 222
+A+
Sbjct: 62 TQAM 65
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFV 210
G SG S D LY+GGL +T L N F + GEI +V + + F+
Sbjct: 1 GSSGSSG-EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV------QRQQCAFI 53
Query: 211 TYKTVEAAKKAVDDPHKTL--GGRTIIVK 237
+ T +AA+ A + L GR + VK
Sbjct: 54 QFATRQAAEVAAEKSFNKLIVNGRRLNVK 82
>pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 77 VRGLAWNTTSETLCAAFRVHGEI---EEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+RGL + T+E + A F H I +EG + G+ G F+ + E Q+ALR
Sbjct: 28 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87
Query: 134 PSKLIDGR 141
L+ R
Sbjct: 88 HKDLLGKR 95
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
++L++ + L FG+ G+I + + +++ S+GFGFVT++ A +A +
Sbjct: 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRARE 73
Query: 224 DPHKT-LGGRTIIVKLA 239
H T + GR I V A
Sbjct: 74 KLHGTVVEGRKIEVNNA 90
>pdb|4DCK|C Chain C, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
Length = 192
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 349 VENPKKSLKIAFLPTGSFYFAQ--TPRLFSKSLPFSNENVSKSPFVRKEAQAAMLEYLHL 406
++ + L +A G Y ++ TP K F N V+ S + ++ Q+ YL L
Sbjct: 61 IQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGL 120
Query: 407 TRNLPFMDAEHMSKNSP--HFVEK 428
+ M H+ KN P HF+ K
Sbjct: 121 NKEGEIMKGNHVKKNKPAAHFLPK 144
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
++L++ + L FG+ G+I + + +++ S+GFGFVT++ A +A +
Sbjct: 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRARE 87
Query: 224 DPHKT-LGGRTIIVKLA 239
H T + GR I V A
Sbjct: 88 KLHGTVVEGRKIEVNNA 104
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+ +F+R L++++ E L + G+++ V+ T S+G F + E+ Q L
Sbjct: 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75
Query: 133 APS-------KLIDGRLAVCNLAC---EGLSGVSA 157
A S +DGR +LA E SG S+
Sbjct: 76 AASLEAEGGGLKLDGRQLKVDLAVTRDEAASGPSS 110
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV- 222
+ ++I LS + E L + G+++ V DT S+G F + T EAA+K +
Sbjct: 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 75
Query: 223 ------DDPHKTLGGRTIIVKLADT 241
+ L GR + V LA T
Sbjct: 76 AASLEAEGGGLKLDGRQLKVDLAVT 100
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
L+I L E T L + F G + V DK T+ S+ FGFV++ ++A+ A+
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAI 99
>pdb|3HBW|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Homologous Factor 2a (Fhf2a), Also Referred To As
Fibroblast Growth Factor 13a (Fgf13a)
pdb|3HBW|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Homologous Factor 2a (Fhf2a), Also Referred To As
Fibroblast Growth Factor 13a (Fgf13a)
Length = 193
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 349 VENPKKSLKIAFLPTGSFYFAQ--TPRLFSKSLPFSNENVSKSPFVRKEAQAAMLEYLHL 406
++ + L +A G Y ++ TP K F N V+ S + ++ Q+ YL L
Sbjct: 62 IQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGL 121
Query: 407 TRNLPFMDAEHMSKNSP--HFVEK 428
+ M H+ KN P HF+ K
Sbjct: 122 NKEGEIMKGNHVKKNKPAAHFLPK 145
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219
++ +R +Y+G + T + L F G I ++ DK + +G+ ++ + +
Sbjct: 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVD 92
Query: 220 KAVDDPHKTLGGRTIIV 236
AV GRTI V
Sbjct: 93 AAVAMDETVFRGRTIKV 109
>pdb|2LXI|A Chain A, Nmr Structure Of The N-Terminal Rna Binding Domain 1
(Rrm1) Of The Protein Rbm10 From Homo Sapiens
Length = 91
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+ +R L T + + + HG + E ++ +K++G+SRG+ F+ + H++ + A
Sbjct: 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63
>pdb|4FP9|B Chain B, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|E Chain E, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|G Chain G, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|H Chain H, Human Mterf4-Nsun4 Protein Complex
Length = 335
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 749 LLDVGYVENSNEMAKALKHFRGRGAELQERFDCL---VNAGLDRKDVCEMIRVSPQILNM 805
LLD+G+ SN L R RGA LQ+ D + + GL+ + VC +++ SPQ+L +
Sbjct: 53 LLDMGF---SNAHINELLSVR-RGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKL 108
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++G + ++T E L FF ++GE+ + + R F FVT+ A D
Sbjct: 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-----KPFRAFAFVTF--------ADDK 59
Query: 225 PHKTLGGRTIIVKLADTH 242
++L G +I+K H
Sbjct: 60 VAQSLCGEDLIIKGISVH 77
>pdb|1WHY|A Chain A, Solution Structure Of The Rna Recognition Motif From
Hypothetical Rna Binding Protein Bc052180
Length = 97
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221
+L++GGL P + L F R G I D + F ++ Y++++AA+ A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRT------IDHVKGDSFAYIQYESLDAAQAA 69
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
LY+G LS T E + F + G+I++ + DK + GF FV Y + A+ A+
Sbjct: 21 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKTACGFCFVEYYSRADAENAM 76
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
KLF+ GL + + G ++ ++ D ATG S+GY F Y + T A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 60
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL+IGGL + + + G ++ ++ D T S+G+ F Y + +A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 225 PH-KTLGGRTIIVKLA 239
+ LG + ++V+ A
Sbjct: 63 LNGMQLGDKKLLVQRA 78
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 161 LAQRKLYIGGLSPEVTTEVLLN-FFGRHGEIEEGSV-AYDKDTNESRGFGFVTYKTVEAA 218
L R++ I LS E+ E LL F G IE+ ++ A K+ + + F ++ ++A
Sbjct: 208 LEGREIXIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFXVFENKDSA 267
Query: 219 KKAVDDPHKTLGGRTIIVKLAD 240
++A+ LG R I V LAD
Sbjct: 268 ERALQXNRSLLGNREISVSLAD 289
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 201 TNESRGFGFVTYKTVEAAKKAVDD-PHKT-LGGRTIIVKLADT 241
T RGFGFV + T + AKKA + H T L GR ++++ AD+
Sbjct: 54 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG---FGFVTYKTVEAAKKA 221
++Y+G L P++ T+ + + F ++G I D D RG F FV ++ A+ A
Sbjct: 24 RIYVGNLPPDIRTKDIEDVFYKYGAIR------DIDLKNRRGGPPFAFVEFEDPRDAEDA 77
Query: 222 V 222
V
Sbjct: 78 V 78
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
LFV L +N ++ L + AV+ D G +R +G++ ++ E + AL
Sbjct: 10 LFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMTRKFGYVDFESAEDLEKALELT 68
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194
+ G + E G + + R L L +VT + L F EI
Sbjct: 69 GLKVFGN----EIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--L 122
Query: 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234
V+ D +S+G ++ +KT A+K ++ T + GR+I
Sbjct: 123 VSKD---GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 160
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK-DTNESRGFGFVTYKTVEAAKKAV 222
K++IG L+ VT + ++ F +G+I+ + ++ + S+G+ +V ++ + A+KA+
Sbjct: 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKAL 64
>pdb|3O3M|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 385
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 44 LVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTS--------ETLCAAFRV 95
+ D L LG + S IK ++ P +RKL G+ + + E +C
Sbjct: 98 MCDTLICLGQNWKSAVPHIKYISLVHPQNRKLEA-GVKYLISEYKGVKRELEEICGYEIE 156
Query: 96 HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
+I E +Y++ R + + YKH + + ++R+
Sbjct: 157 EAKIHESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRS 194
>pdb|1X4G|A Chain A, Solution Structure Of Rrm Domain In Nucleolysin Tiar
Length = 109
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+Y GG++ +T +++ F G+I E V +K G+ FV + T E+A A+
Sbjct: 28 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,115,979
Number of Sequences: 62578
Number of extensions: 940903
Number of successful extensions: 2508
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2221
Number of HSP's gapped (non-prelim): 294
length of query: 901
length of database: 14,973,337
effective HSP length: 108
effective length of query: 793
effective length of database: 8,214,913
effective search space: 6514426009
effective search space used: 6514426009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)