BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045707
(901 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G +K+++GGLSPE T E + +FG GEIE
Sbjct: 87 KEHKLDGKLIDPKRA-KALKGKEP-----PKKVFVGGLSPETTEEQIKQYFGGFGEIENI 140
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF FVTY E KK ++ +G +K+A
Sbjct: 141 ELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVA 186
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 152 LSGVSAVPDLAQR-------------KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYD 198
++G A PD + K++IGGLS + + + L + R GE+ + ++ D
Sbjct: 1 MTGFGATPDFNEGSKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 60
Query: 199 KDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQLPAAVVP 257
T SRGFGFV +K + K ++ L G+ I K A KGK PP+ + P
Sbjct: 61 PVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 120
Score = 40.0 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 63 KSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYK 122
K++ +P +K+FV GL+ TT E + F GEIE + D T + RG+ F+TY
Sbjct: 102 KALKGKEP-PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYT 160
Query: 123 HMESTQSALRA 133
E + L +
Sbjct: 161 GEEPVKKLLES 171
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ E+L F +G+I E V+ D T +SRG+GF+T+ S L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEIE 191
+ +DG+ +A A P + R K+++GGLS T E + ++F + G IE
Sbjct: 90 GTHELDGKKVDPKVAFP----RRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIE 145
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQL 251
+ + +DK TN RGFGFVT+++ + K + + I K+ + K +P + L
Sbjct: 146 DAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE-----IHFHEINNKMVECKKAQPKEVML 200
Query: 252 PA 253
PA
Sbjct: 201 PA 202
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ TT E + + F G IE+ +++DK T + RG+GF+T++ +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 178 IHFHEINNKMVECKKA 193
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 20/208 (9%)
Query: 36 LDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADP----VHRKLFVRGLAWNTTSETLCA 91
L +++S LV LSRL ++ ++P + K+F+ GL+W+T+ + L
Sbjct: 3 LSEITRSTLVSTLSRL----------LRRHKESNPDFFLIRSKMFIGGLSWDTSKKDLTE 52
Query: 92 AFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151
GE+ + + D TG+SRG+GF+ +K S L +DG+L A +
Sbjct: 53 YLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA-KA 111
Query: 152 LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVT 211
L G +K+++GGLSPE T E + +FG GEIE + D TNE RGF FVT
Sbjct: 112 LQGKEP-----PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVT 166
Query: 212 YKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
Y E +K ++ +G +K A
Sbjct: 167 YTDEEPVQKLLESRFHQIGTGKCEIKAA 194
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 159 PD--LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVE 216
PD L + K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K
Sbjct: 27 PDFFLIRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAV 86
Query: 217 AAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQLPAAVVP 257
+ K ++ L G+ I K A +GK PP+ + P
Sbjct: 87 SVDKVLETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSP 128
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 17/228 (7%)
Query: 16 INGQDFNSSS-SSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRK 74
I GQ +S++ +++D S D +++Q S AEE D K
Sbjct: 108 IRGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNRED---GK 164
Query: 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134
+F+ GL W TT ++L F GE+ + V+ D TG+SRG+GF+T+K+ + +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 135 SKLIDGRLAVCNLACEGLSGVSAVPDLAQRK---LYIGGLSPEVTTEVLLNFFGRHGEIE 191
L DG++ + A+P Q K +++GG+ + T E NFF + G +
Sbjct: 225 HHL-DGKI---------IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 192 EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ ++ DKDT RGFGFVTY+ A + + P+ T+ G+ + VK A
Sbjct: 275 DATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRA 322
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 8/188 (4%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 55 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 113
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ A A+ +K+++GGL
Sbjct: 114 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAM-------AMKKDPVKKIFVGGL 166
Query: 172 SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231
+PE T E + +FG+ GEIE + D N+ RGF F+T+K + KK ++ T+ G
Sbjct: 167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSG 226
Query: 232 RTIIVKLA 239
+K+A
Sbjct: 227 SKCEIKVA 234
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G +K+++GGLSP+ + E + +FG GEIE
Sbjct: 209 KEHKLDGKLIDPKRA-KALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 262
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 263 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + K ++
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 225 PHKTLGGRTIIVKLADTHKGKPP 247
L G+ I K A KGK P
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEP 231
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ +T+ E + F GEIE + D T + RG+ FITY E + L
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 133 A 133
+
Sbjct: 293 S 293
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT ++L F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A V L +K+++GG+ + L ++F ++G+IE
Sbjct: 95 ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIET 154
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
V D+ + + RGF FVT+ + K V + T+ G VK A
Sbjct: 155 IEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 56 PSIAEEIKSVASADPVH-----RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT 110
PS++ S DP K+F+ GL+W+T+ + L GE+ + + D T
Sbjct: 29 PSLSPSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVT 88
Query: 111 GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGG 170
G+SRG+GF+ +K S L +DG+L A + L G +K+++GG
Sbjct: 89 GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA-KALKGKEP-----PKKVFVGG 142
Query: 171 LSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLG 230
LSP+ + E + +FG GEIE + D TNE RGF F+TY E KK ++ + +G
Sbjct: 143 LSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIG 202
Query: 231 GRTIIVKLA 239
+K+A
Sbjct: 203 SGKCEIKVA 211
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL W+TT + L F +G + + ++ D ATG+SRG+GF++++ S ++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRK---LYIGGLSPEVTTEVLLNFFGRHGEI 190
++DG++ + A+P Q K +++GG+ P+V + FF + G I
Sbjct: 220 -QHILDGKV---------IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI 269
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+ + DKDT +SRGFGFVTY + +A + + R I +K A+
Sbjct: 270 IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 319
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Query: 68 ADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
+P H RKLF+ GL + TT E L A F G I + V+ D T +SRG+GFITY H
Sbjct: 25 TEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSM 84
Query: 127 TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR 186
A ++ IDGR+ A S +KL++G L + + + ++F
Sbjct: 85 IDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQH 144
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
G I + ++ DK+T + RGF FV + + K V L G+ + VK A
Sbjct: 145 FGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 51/116 (43%)
Query: 34 SLLDPLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAF 93
S++D KS+ + R+ ++ + +A +KLFV L + +++ F
Sbjct: 83 SMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYF 142
Query: 94 RVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149
+ G I + ++ DK TGK RG+ F+ + + + ++G++ A
Sbjct: 143 QHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKAL 198
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 7/179 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV LA++ S+ L F G +E VIY++ T +SRG+GF+T ++ ++A+
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 134 PSKL-IDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEI 190
++ ++GRL N A S P + + ++Y+G L +V L F HG++
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLADTHKGKPPQ 248
E V YD++T SRGFGFVT V+ +A+ + L GR I V +A+ +PP+
Sbjct: 271 VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE---RPPR 326
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
+ KL++G L+ +V ++ L F + G +E V Y+++T++SRGFGFVT +V+ A+ AV
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 223 DDPHK-TLGGRTIIVKLADTHKGKP---PQTQLPA 253
+ ++ L GR + V A +P P+ PA
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPA 243
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S L
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G +K+++GGLSP+ + E + +FG GEIE
Sbjct: 90 KEHKLDGKLIDPKRA-KALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 143
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 144 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 189
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ +T+ E + F GEIE + D T + RG+ FITY E + L
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 133 A 133
+
Sbjct: 174 S 174
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 9/189 (4%)
Query: 52 GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111
G+Q + ++I + + + K+FV GL+W+T+ + L F GE+ + + D TG
Sbjct: 49 GNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG 107
Query: 112 KSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGL 171
+SRG+GFI +K S + L +DGR+ A A+ +K+++GGL
Sbjct: 108 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAM-------AMKKDPVKKIFVGGL 160
Query: 172 SPEV-TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLG 230
+PE T E + +FG GEIE + D N+ RGF F+T+K E KK ++ T+
Sbjct: 161 NPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVS 220
Query: 231 GRTIIVKLA 239
G +K+A
Sbjct: 221 GSKCEIKVA 229
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K+++GGLS + + + L ++F + GE+ + ++ D +T SRGFGF+ +K + +K +D
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L GR I K A K P
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP 151
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Query: 56 PSIAEEIKSVASADPVHR-KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSR 114
P E K AS + K+F+ GL+W+T+ + L GE+ + + D TG+SR
Sbjct: 8 PDFNEGSKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSR 67
Query: 115 GYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPE 174
G+GF+ +K S L +DG+L A + L G +K+++GGLSPE
Sbjct: 68 GFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA-KALKGKEPP-----KKVFVGGLSPE 121
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTI 234
T E + +FG GEIE + D TNE RGF FVTY E KK ++ +G
Sbjct: 122 TTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKC 181
Query: 235 IVKLA 239
+K A
Sbjct: 182 EIKAA 186
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 152 LSGVSAVPDL-------------AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYD 198
++G A PD + K++IGGLS + + + L + R GE+ + ++ D
Sbjct: 1 MAGFGAAPDFNEGSKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTD 60
Query: 199 KDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK-PPQTQLPAAVVP 257
T SRGFGFV +K + K ++ L G+ I K A KGK PP+ + P
Sbjct: 61 PVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 120
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W+T+ + L GE+ + + D TG+SRG+GF+ +K S + L
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 134 PSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193
+DG+L A + L G +K+++GGLSP+ + E + +FG GEIE
Sbjct: 91 KEHKLDGKLIDPKRA-KALKGKEPP-----KKVFVGGLSPDTSEEQIKEYFGAFGEIENI 144
Query: 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D TNE RGF F+TY E KK ++ + +G +K+A
Sbjct: 145 ELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 190
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + + + L + R GE+ + ++ D T SRGFGFV +K + +K ++
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 225 PHKTLGGRTIIVKLADTHKGK-PPQTQLPAAVVP 257
L G+ I K A KGK PP+ + P
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSP 124
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ +T+ E + F GEIE + D T + RG+ FITY E + L
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 133 A 133
+
Sbjct: 175 S 175
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L +F +G+IE
Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIES 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ DK + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 129 TEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E + A +KLFV G+ +T L F +G+IE +I DK +GK RG+
Sbjct: 84 AVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGF 143
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148
GF+T+ + + I+G A A
Sbjct: 144 GFVTFNDHDPVDKIVLQKYHTINGHNAEVRKA 175
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 6/175 (3%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFF 184
ES + ++G++ A + + V +K+++GGLSP+ E + +F
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYF 202
Query: 185 GRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
G GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A
Sbjct: 203 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
+A + K++IGGLS + T + L ++F + GE+ + ++ D T SRGFGFV +K
Sbjct: 89 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
E+ K +D L G+ I K A K K P
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPVPLPLGAGYPQAGKAH 273
PHK + GR + K A + + +Q P A + V G + + H
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTVKKIFVGGIKEDTEEH 119
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 6/175 (3%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
A+A K+F+ GL+W+TT + L F GE+ + + D TG+SRG+GF+ +K
Sbjct: 89 AAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFF 184
ES + ++G++ A + + V +K+++GGLSP+ E + +F
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYF 202
Query: 185 GRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
G GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A
Sbjct: 203 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 257
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
+A + K++IGGLS + T + L ++F + GE+ + ++ D T SRGFGFV +K
Sbjct: 89 AAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 148
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
E+ K +D L G+ I K A K K P
Sbjct: 149 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 92.4 bits (228), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
S P KLFV L ++ SE L F G +E VIY++ T +SRG+GF+T +E
Sbjct: 49 SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108
Query: 127 TQSALRAPSKL-IDGRLAVCNLACEGLSGVSAVPDLAQR-------KLYIGGLSPEVTTE 178
+ A+ + +DGR N A S P+ A R ++Y+G L +V T
Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKAAPRGS-----PERAPRGDFEPSCRVYVGNLPWDVDTS 163
Query: 179 VLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT---VEAAKKAVDDPHKTLGGRTII 235
L F HG++ V D++T SRGFGFVT + V A A+D +TL GR +
Sbjct: 164 RLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDG--QTLDGRAVR 221
Query: 236 VKLAD 240
V +A+
Sbjct: 222 VNVAE 226
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGF 209
EG G S P+ A KL++G L +V +E L F G +E V Y+++T+ SRGFGF
Sbjct: 43 EGGQGFSEPPEEA--KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100
Query: 210 VTYKTVEAAKKAVD 223
VT TVE A+KAV+
Sbjct: 101 VTMSTVEEAEKAVE 114
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 6/195 (3%)
Query: 52 GSQYPS-IAEEIKSVASADPVHR-KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKA 109
G +PS + E ++ +P KLFV L ++ SE L F+ G +E VIY++
Sbjct: 74 GGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRE 133
Query: 110 TGKSRGYGFITYKHMESTQSALRAPSKL-IDGRLAVCNLACEGLSGVSAVPDLAQ--RKL 166
T +SRG+GF+T +E A+ S+ ++GRL N A S P Q ++
Sbjct: 134 TDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRI 193
Query: 167 YIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-P 225
Y+G + ++ L F HG++ V +D+++ SRGFGFVT + +A+ +
Sbjct: 194 YVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLD 253
Query: 226 HKTLGGRTIIVKLAD 240
+TL GRTI V A+
Sbjct: 254 GQTLDGRTIRVNAAE 268
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD- 223
KL++G L ++ +E L F + G +E V Y+++T+ SRGFGFVT TVE A KAV+
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 224 DPHKTLGGRTIIVKLADTHKGKP---PQTQLPA 253
L GR + V A +P P+T P
Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT 190
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 6/175 (3%)
Query: 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM 124
A+A K+F+ GL+W+TT + L F G++ + + D TG+SRG+GF+ +K
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 125 ESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFF 184
ES + ++G++ A + + V +K+++GGLSP+ E + +F
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRA-KAMKTKEPV-----KKIFVGGLSPDTPEEKIREYF 200
Query: 185 GRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
G GE+E + D TN+ RGF F+T+K E KK ++ + +G +K+A
Sbjct: 201 GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 255
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 156 SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215
+A + K++IGGLS + T + L ++F + G++ + ++ D T SRGFGFV +K
Sbjct: 87 AATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKES 146
Query: 216 EAAKKAVDDPHKTLGGRTIIVKLADTHKGKPP 247
E+ K +D L G+ I K A K K P
Sbjct: 147 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 178
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V H T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 96 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148
GF+T+ + + I+G A A
Sbjct: 156 GFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 130/298 (43%), Gaps = 33/298 (11%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 134 P-----SKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGR 186
P SK ID ++A A P + R K+++GGLS E + +F +
Sbjct: 82 PHHELDSKTIDPKVAFPR---------RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQ 132
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK- 245
G++E+ + +DK TN RGFGFVT++ + +K + + + + K A +
Sbjct: 133 FGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMF 192
Query: 246 PPQTQ-----LPAAVVPVPLPLGA-GYPQ----AGKAHAN-TPPVGYSYP-----QNVPP 289
PP T+ LP + L +G GYP G+ + P GY +P P
Sbjct: 193 PPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPV 252
Query: 290 YPTSSYTSPNTAPVPYPTQPPISYPPIPLKKDPIGPIGHPATAPKRRIASILGRVSSN 347
+ + + Y QP P P +P P G P +A + G S +
Sbjct: 253 AAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPVADLYGPASQD 310
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPVPLPLGAGYPQAGKAH 273
PHK + GR + K A + + +Q P A + V G + + H
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTVKKIFVGGIKEDTEEH 119
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 64 SVASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 122 KHMES-----TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPE 174
QS SK ID ++A A P + R K+++GGLS
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR---------RAQPKMVTRTKKIFVGGLSVN 119
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
T E + ++F + G++++ + +DK TN RGFGFVT+++ + +K +
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + T E L +FG+ GE++E V D T SRGFGFVT+ K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L +TI K+A + +P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 64 SVASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 122 KHMES-----TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPE 174
QS SK ID ++A A P + R K+++GGLS
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR---------RAQPKMVTRTKKIFVGGLSVN 119
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
T E + ++F + G++++ + +DK TN RGFGFVT+++ + +K +
Sbjct: 120 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + T E L +FG+ GE++E V D T SRGFGFVT+ K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L +TI K+A + +P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPV 258
PHK + GR + K A + + +Q P A + V
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTV 104
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPV 258
PHK + GR + K A + + +Q P A + V
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTV 104
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPV 258
PHK + GR + K A + + +Q P A + V
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTV 104
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 14/189 (7%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV L ++ S L F G +E VIYDK TG+SRG+GF+T E ++A +
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 134 PSKL-IDGRLAVCNLA---------CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNF 183
+ +DGR N + ++Y+G L+ V + L
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207
Query: 184 FGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242
F G++ + V YD+D+ SRGFGFVTY + E A++ L GR I V A+
Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEA- 266
Query: 243 KGKPPQTQL 251
+PP+ Q
Sbjct: 267 --RPPRRQF 273
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+F+ GL+W T+ ++L F GEI E V+ D T +SRG+GF+T+ S L
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 134 P-----SKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGR 186
P SK ID ++A A P + R K+++GGLS E + +F +
Sbjct: 82 PHHELDSKTIDPKVAFPR---------RAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQ 132
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
G++E+ + +DK TN RGFGFVT++ + +K + + I K+ + K +P
Sbjct: 133 FGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE-----IHFHEINNKMVECKKAQP 187
Query: 247 PQTQLPAAV 255
+ P
Sbjct: 188 KEVMFPPGT 196
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 147 LACEGLSGVSAVPDLAQR---KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNE 203
+ G G S + +Q K++IGGLS + + + L ++F + GEI E V D T
Sbjct: 1 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 204 SRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKP 246
SRGFGFVT+ + K + PH L +TI K+A + +P
Sbjct: 61 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQP 103
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
+K+FV GL+ NT E + F G++E+ +++DK T + RG+GF+T+++ + +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 133 APSKLIDGRLAVCNLA 148
I+ ++ C A
Sbjct: 170 IHFHEINNKMVECKKA 185
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 64 SVASADPVHR--KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
+AS D H K+F+ GL+W TT E L F GE++E V+ D T +SRG+GF+T+
Sbjct: 9 GLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Query: 122 KHMES-----TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPE 174
QS SK ID ++A A P + R K+++GGLS
Sbjct: 69 MDQAGVDKVLAQSRHELDSKTIDPKVAFPR---------RAQPKMVTRTKKIFVGGLSVN 119
Query: 175 VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
T E + +F + G++++ + +DK TN RGFGFVT+++ + +K +
Sbjct: 120 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
K++IGGLS + T E L +FG+ GE++E V D T SRGFGFVT+ K +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 225 PHKTLGGRTIIVKLADTHKGKP 246
L +TI K+A + +P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY +E +A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +DGR+ A L +K+++GG+ + L ++F ++G+IE
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 133
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGF FVT+ + K V + T+ G V+ A
Sbjct: 134 IEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPV 258
PHK + GR + K A + + +Q P A + V
Sbjct: 74 ARPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTV 104
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 1/178 (0%)
Query: 63 KSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121
KS + +P RKLF+ GL++ TT E+L + F G + + V+ D T +SRG+GF+TY
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 122 KHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181
+E +A+ +DGR+ A L +K+++GG+ + L
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++F ++G+IE + D+ + + RGF FVT+ ++ K V + T+ G V+ A
Sbjct: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223
RKL+IGGLS E T E L + F + G + + V D +T SRGFGFVTY TVE A++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 224 -DPHKTLGGRTIIVKLADTHKGKPPQTQLPAAVVPV 258
PHK + GR + K A + + +Q P A + V
Sbjct: 74 TTPHK-VDGRVVEPKRAVSRE----DSQRPGAHLTV 104
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
K+FV L ++ S L F G +E VIYDK TG+SRG+GF+T E ++A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 134 PSKL-IDGRLAVCNLA---------------CEGLSGVSAVPDLAQRKLYIGGLSPEVTT 177
+ +DGR N + ++Y+G L+ V
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207
Query: 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236
+ L F G++ + V YD+D+ SRGFGFVTY + E A++ L GR I V
Sbjct: 208 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
Query: 237 KLADTHKGKPPQTQL 251
A+ +PP+ Q
Sbjct: 268 SPAE---ARPPRRQF 279
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDT 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 84 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGF 143
Query: 117 GFITY 121
GF+T+
Sbjct: 144 GFVTF 148
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 8/204 (3%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL+W TT E L F G+I + V+ + +G+SRG+GF+T+ + L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 134 PSKLIDGRL---AVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190
+DGR CN + K+++GGL VT L FF R+G++
Sbjct: 68 GPHTLDGRTIDPKPCNPRT-----LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKV 122
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGKPPQTQ 250
E + YD++ +SRGFGF++++ + + ++ + L G+ + +K A+ G Q
Sbjct: 123 TEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNS 182
Query: 251 LPAAVVPVPLPLGAGYPQAGKAHA 274
+ V LG G HA
Sbjct: 183 NNSTVGGAYGKLGNECSHWGPHHA 206
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 96 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148
GF+T+ + + I+G A A
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 96 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148
GF+T+ + + I+G A A
Sbjct: 156 GFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 4/171 (2%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV L ++ SE L F G +E VIY++ T +SRG+GF+T +E + A+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 134 PSKL-IDGRLAVCNLACEGLSGVSAVPDLAQR--KLYIGGLSPEVTTEVLLNFFGRHGEI 190
++ ++GRL N A P ++ ++Y+G + + L F HG++
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKV 256
Query: 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD-PHKTLGGRTIIVKLAD 240
V YD++T SRGFGFVT + A+ + ++L GRTI V +A+
Sbjct: 257 VSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224
KL++G L +V +E L F + G +E V Y++DT++SRGFGFVT TVE A+KAV+
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 225 PHK-TLGGRTIIVKLADTHKGKPPQ 248
++ + GR + V A +G+ P+
Sbjct: 197 YNRYDVNGRLLTVNKA-ARRGERPE 220
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Query: 68 ADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMES 126
+P H RKLF+ GL + TT E+L F GEI + V+ D T +SRG+GFITY
Sbjct: 11 GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHM 70
Query: 127 TQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGR 186
A A +DGR+ A +KL++GG+ E+ L ++F +
Sbjct: 71 VDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQ 130
Query: 187 HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+G + ++ DK+T + RGF FV + + K + + G+ I VK A
Sbjct: 131 YGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKA 183
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 128
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K V + T+ G V+ A
Sbjct: 129 IEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 84 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 143
Query: 117 GFITY 121
GF+T+
Sbjct: 144 GFVTF 148
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLFV GL+W TT + L F +GEIE V D TG+SRG+ FI + + E+
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A +I+ + A K+++GGL+ E++ E + +FG+ G I E
Sbjct: 116 ADEHIINSKKVDPKKAK-----------ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVE 164
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ +DK ++ +GF F+T+ + + + P + + G+ + VK A
Sbjct: 165 VEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRA 211
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 140 GRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK 199
G N + + S S D RKL++GGLS E T + L + FG++GEIE +V D
Sbjct: 33 GAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDP 91
Query: 200 DTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKGK 245
T SRGF F+ + EA K + + + K A GK
Sbjct: 92 QTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHGK 137
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131
H K+FV GL + E + F G I E + +DK + +G+ FIT+ + L
Sbjct: 135 HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL 194
Query: 132 RAPSKLIDGR 141
+ P + I G+
Sbjct: 195 KTPKQKIAGK 204
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133
KLFV GL W+TT ETL + F +GE+ + ++ DK T +SRG+GF+ +K + L +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 134 PSKLIDGRLAVCNLAC-------------EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVL 180
+DGR + C EG + K+++GG+ L
Sbjct: 71 RPHTLDGR-NIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETEL 129
Query: 181 LNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240
+F + G + E + YD + RGFGF+T++ ++ +AV+ + G+ + VK A+
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 189
Query: 241 THK------GKPPQTQLPAAVVPVPLPLGAGYP 267
G+P +Q + VVP AG P
Sbjct: 190 PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL + TT + L A F G I + V+ D T +SRG+GFITY +A
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR A S +KL++GGL + E L +F G+I
Sbjct: 84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVS 143
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
++ DKDT + RGF F+ + + K + ++ +T+ VK A
Sbjct: 144 VNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA 190
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132
RKLF+ GL++ TT E+L + G++ + V+ D A+ +SRG+GF+T+ M +A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 133 APSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE 192
A IDGR+ A + +KL++GG+ + L ++F +G+I+
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT 140
Query: 193 GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239
+ D+ + + RGFGFVT+ + K + T+ G V+ A
Sbjct: 141 IEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++A E A +KLFV G+ +T L F +G+I+ +I D+ +GK RG+
Sbjct: 96 AVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGF 155
Query: 117 GFITY 121
GF+T+
Sbjct: 156 GFVTF 160
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 1/165 (0%)
Query: 59 AEEIKSVASADPVH-RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYG 117
AE AS +P + RK+FV GL NTT + + + GEI + V+ D T +SRG+G
Sbjct: 8 AENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFG 67
Query: 118 FITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTT 177
F+T+ +A++ +IDG+ A + +++ ++LY+ G+ + T
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTE 127
Query: 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222
++L +F ++G + + + DK T + RGFGFVT+ ++ + V
Sbjct: 128 DMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 142 LAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDT 201
+ + E SG +++ RK+++GGL+ T +++ F+ + GEI + V D T
Sbjct: 1 MTDVEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60
Query: 202 NESRGFGFVTY--KT-VEAAKKAVDDPHKTLGGRTIIVKLA 239
SRGFGFVT+ KT V+AA K PH + G+T+ K A
Sbjct: 61 KRSRGFGFVTFSGKTEVDAAMKQR--PH-IIDGKTVDPKRA 98
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 57 SIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY 116
++ + K+ + ++ ++L+V G+ + T + L F +G + + +I DKAT K RG+
Sbjct: 98 AVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157
Query: 117 GFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLS 153
GF+T+ +S + S +++G C++ +GLS
Sbjct: 158 GFVTFDDHDSVDQCVLQKSHMVNGHR--CDVR-KGLS 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,364,129
Number of Sequences: 539616
Number of extensions: 15356796
Number of successful extensions: 56919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 763
Number of HSP's that attempted gapping in prelim test: 48590
Number of HSP's gapped (non-prelim): 5924
length of query: 901
length of database: 191,569,459
effective HSP length: 127
effective length of query: 774
effective length of database: 123,038,227
effective search space: 95231587698
effective search space used: 95231587698
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)