Query 045707
Match_columns 901
No_of_seqs 750 out of 4146
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03196 MOC1-like protein; Pr 100.0 9.5E-59 2.1E-63 527.0 26.7 367 458-886 69-446 (487)
2 PF02536 mTERF: mTERF; InterP 100.0 7.3E-47 1.6E-51 421.9 10.1 335 491-877 2-345 (345)
3 PLN03196 MOC1-like protein; Pr 100.0 9.9E-39 2.2E-43 363.3 25.1 371 393-846 59-439 (487)
4 KOG0148 Apoptosis-promoting RN 100.0 1.4E-35 3.1E-40 290.9 21.8 214 27-246 6-242 (321)
5 TIGR01645 half-pint poly-U bin 100.0 1.4E-30 3.1E-35 297.0 28.1 175 70-244 105-286 (612)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-30 5.6E-35 306.8 28.6 217 27-245 88-367 (562)
7 PF02536 mTERF: mTERF; InterP 100.0 7.5E-33 1.6E-37 309.1 5.4 327 456-838 1-339 (345)
8 KOG0117 Heterogeneous nuclear 100.0 2.3E-29 5.1E-34 263.4 23.5 219 19-246 75-335 (506)
9 TIGR01659 sex-lethal sex-letha 100.0 3.1E-29 6.7E-34 273.5 24.0 172 67-244 102-277 (346)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-29 7.1E-34 280.8 20.7 218 27-244 3-351 (352)
11 TIGR01628 PABP-1234 polyadenyl 100.0 9.2E-28 2E-32 285.0 27.5 213 28-243 1-262 (562)
12 KOG0144 RNA-binding protein CU 100.0 6.2E-29 1.3E-33 258.8 14.1 176 67-248 29-212 (510)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.2E-26 4.9E-31 257.9 24.7 168 71-244 2-173 (352)
14 KOG1267 Mitochondrial transcri 99.9 2.5E-27 5.4E-32 268.7 14.6 331 434-855 74-411 (413)
15 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-25 2.5E-30 261.1 24.7 177 66-242 83-266 (457)
16 KOG0145 RNA-binding protein EL 99.9 6.5E-26 1.4E-30 221.1 16.3 216 27-242 41-358 (360)
17 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-24 2.7E-29 248.6 28.6 212 24-244 55-309 (578)
18 KOG0131 Splicing factor 3b, su 99.9 1.9E-25 4.2E-30 208.0 10.6 175 71-250 8-185 (203)
19 KOG0145 RNA-binding protein EL 99.9 8.5E-25 1.8E-29 213.3 14.6 172 68-245 37-212 (360)
20 KOG0127 Nucleolar protein fibr 99.9 2.3E-23 5E-28 222.9 17.4 216 28-244 6-380 (678)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.2E-22 4.7E-27 232.9 26.2 162 72-243 2-175 (481)
22 KOG0117 Heterogeneous nuclear 99.9 3.3E-23 7.2E-28 217.5 16.7 193 40-244 44-250 (506)
23 KOG0124 Polypyrimidine tract-b 99.9 1.7E-23 3.8E-28 212.9 13.5 172 72-243 113-291 (544)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-22 2.4E-27 239.5 22.3 170 72-241 295-501 (509)
25 KOG0144 RNA-binding protein CU 99.9 6.3E-23 1.4E-27 214.2 13.1 218 25-243 32-505 (510)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.3E-22 7.3E-27 231.3 19.3 207 28-243 3-352 (481)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 2.5E-22 5.4E-27 229.7 17.5 192 39-243 18-223 (578)
28 KOG4205 RNA-binding protein mu 99.9 1.1E-21 2.4E-26 206.9 20.5 178 71-248 5-182 (311)
29 KOG0127 Nucleolar protein fibr 99.9 2.7E-22 5.9E-27 214.8 15.2 172 71-243 4-197 (678)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.1E-21 2.4E-26 231.0 20.3 171 66-242 169-375 (509)
31 TIGR01622 SF-CC1 splicing fact 99.9 2.2E-21 4.7E-26 225.2 21.2 212 27-242 89-448 (457)
32 KOG0109 RNA-binding protein LA 99.9 2.7E-21 5.9E-26 192.6 15.0 153 73-249 3-157 (346)
33 KOG0148 Apoptosis-promoting RN 99.8 3.9E-20 8.4E-25 182.6 16.1 141 69-244 3-144 (321)
34 KOG1267 Mitochondrial transcri 99.8 1.6E-20 3.5E-25 213.1 13.0 270 567-857 69-341 (413)
35 KOG0123 Polyadenylate-binding 99.8 4.3E-20 9.4E-25 202.6 13.2 207 28-243 2-247 (369)
36 KOG0123 Polyadenylate-binding 99.8 8.1E-20 1.8E-24 200.5 14.1 156 73-248 2-159 (369)
37 KOG0110 RNA-binding protein (R 99.8 5.9E-20 1.3E-24 204.0 11.7 170 74-243 517-694 (725)
38 KOG0146 RNA-binding protein ET 99.8 1.4E-19 2.9E-24 177.8 9.7 182 63-245 10-368 (371)
39 TIGR01645 half-pint poly-U bin 99.8 3.3E-18 7.2E-23 196.1 19.8 124 25-148 105-281 (612)
40 KOG0147 Transcriptional coacti 99.8 2.1E-19 4.6E-24 194.7 7.3 181 63-243 170-359 (549)
41 KOG0105 Alternative splicing f 99.6 9.8E-15 2.1E-19 136.5 17.3 159 70-238 4-186 (241)
42 TIGR01659 sex-lethal sex-letha 99.6 2.7E-15 5.9E-20 164.2 12.3 126 25-150 105-274 (346)
43 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 138.9 14.1 84 161-244 32-116 (144)
44 KOG4206 Spliceosomal protein s 99.6 1.6E-14 3.4E-19 141.5 14.6 162 71-240 8-220 (221)
45 KOG0149 Predicted RNA-binding 99.6 1.3E-14 2.8E-19 142.0 11.4 82 160-241 9-90 (247)
46 KOG0149 Predicted RNA-binding 99.6 6.9E-15 1.5E-19 143.9 8.8 83 68-150 8-90 (247)
47 PLN03134 glycine-rich RNA-bind 99.5 1.5E-14 3.3E-19 138.4 9.8 84 69-152 31-115 (144)
48 KOG4211 Splicing factor hnRNP- 99.5 7.2E-14 1.6E-18 150.1 14.2 168 69-240 7-180 (510)
49 KOG0147 Transcriptional coacti 99.5 2.2E-14 4.7E-19 156.2 9.3 164 73-241 279-527 (549)
50 KOG4212 RNA-binding protein hn 99.5 1.5E-13 3.4E-18 144.1 13.7 166 72-239 44-291 (608)
51 KOG0124 Polypyrimidine tract-b 99.5 3.8E-13 8.2E-18 138.0 12.9 214 27-240 113-533 (544)
52 KOG0110 RNA-binding protein (R 99.4 9.7E-13 2.1E-17 147.2 12.7 170 65-240 378-596 (725)
53 KOG1365 RNA-binding protein Fu 99.4 1.5E-12 3.1E-17 134.9 12.5 167 74-242 163-362 (508)
54 KOG0106 Alternative splicing f 99.4 3.4E-13 7.4E-18 133.9 7.3 151 73-239 2-168 (216)
55 KOG1548 Transcription elongati 99.4 5.6E-12 1.2E-16 129.7 14.9 168 70-242 132-352 (382)
56 KOG0132 RNA polymerase II C-te 99.4 8.6E-12 1.9E-16 140.2 16.8 108 71-185 420-528 (894)
57 KOG1456 Heterogeneous nuclear 99.4 9.4E-11 2E-15 121.3 22.4 179 70-259 29-216 (494)
58 PF00076 RRM_1: RNA recognitio 99.4 1.4E-12 3.1E-17 109.0 7.1 69 75-144 1-70 (70)
59 KOG0122 Translation initiation 99.3 2.8E-12 6.1E-17 126.0 8.7 81 162-242 188-269 (270)
60 COG0724 RNA-binding proteins ( 99.3 7.6E-12 1.7E-16 135.1 12.4 152 72-223 115-285 (306)
61 PF00076 RRM_1: RNA recognitio 99.3 4.7E-12 1E-16 105.9 7.8 69 166-235 1-70 (70)
62 KOG0109 RNA-binding protein LA 99.3 1.8E-12 3.8E-17 130.2 5.9 125 28-160 3-159 (346)
63 KOG0121 Nuclear cap-binding pr 99.3 4.8E-12 1E-16 111.8 7.0 81 70-150 34-115 (153)
64 PF14259 RRM_6: RNA recognitio 99.3 4E-12 8.8E-17 106.4 6.0 69 75-144 1-70 (70)
65 KOG0122 Translation initiation 99.3 5E-12 1.1E-16 124.3 7.4 81 71-151 188-269 (270)
66 PLN03120 nucleic acid binding 99.3 9.2E-12 2E-16 127.1 9.1 77 72-151 4-80 (260)
67 KOG0126 Predicted RNA-binding 99.2 1.7E-12 3.7E-17 121.6 1.7 90 62-151 25-115 (219)
68 KOG4211 Splicing factor hnRNP- 99.2 1.9E-09 4.2E-14 116.5 25.0 208 28-238 11-354 (510)
69 KOG0132 RNA polymerase II C-te 99.2 1.8E-10 3.9E-15 129.8 17.7 77 162-244 420-497 (894)
70 KOG0125 Ataxin 2-binding prote 99.2 1.1E-11 2.4E-16 126.6 7.2 87 65-153 89-176 (376)
71 KOG0131 Splicing factor 3b, su 99.2 4.7E-12 1E-16 119.0 4.0 128 28-155 10-181 (203)
72 KOG4205 RNA-binding protein mu 99.2 4E-11 8.6E-16 127.3 11.5 165 26-191 5-215 (311)
73 KOG1457 RNA binding protein (c 99.2 5E-11 1.1E-15 115.3 10.2 157 68-228 30-271 (284)
74 PF14259 RRM_6: RNA recognitio 99.2 3.9E-11 8.4E-16 100.4 8.4 69 166-235 1-70 (70)
75 KOG0107 Alternative splicing f 99.2 1.7E-11 3.6E-16 114.7 6.6 78 70-152 8-86 (195)
76 KOG0113 U1 small nuclear ribon 99.2 2E-11 4.3E-16 123.4 7.5 81 70-150 99-180 (335)
77 KOG0146 RNA-binding protein ET 99.2 8.8E-12 1.9E-16 123.2 4.7 101 140-247 2-106 (371)
78 KOG0125 Ataxin 2-binding prote 99.2 3E-11 6.5E-16 123.5 8.4 81 161-243 94-175 (376)
79 KOG0121 Nuclear cap-binding pr 99.2 2.2E-11 4.8E-16 107.6 6.3 79 162-240 35-114 (153)
80 KOG0120 Splicing factor U2AF, 99.2 8.4E-11 1.8E-15 130.7 12.2 172 72-243 289-493 (500)
81 KOG0111 Cyclophilin-type pepti 99.2 1.9E-11 4.2E-16 117.6 5.9 87 161-247 8-95 (298)
82 PLN03121 nucleic acid binding 99.2 4.2E-11 9E-16 120.2 8.5 78 70-150 3-80 (243)
83 KOG0113 U1 small nuclear ribon 99.2 5.2E-11 1.1E-15 120.3 8.4 84 159-242 97-181 (335)
84 KOG4207 Predicted splicing fac 99.2 2.8E-11 6.1E-16 115.7 5.7 80 70-149 11-91 (256)
85 KOG0129 Predicted RNA-binding 99.2 2E-10 4.4E-15 124.9 12.3 168 71-239 258-451 (520)
86 KOG0126 Predicted RNA-binding 99.1 9.2E-12 2E-16 116.7 1.3 80 162-241 34-114 (219)
87 PLN03120 nucleic acid binding 99.1 1.6E-10 3.4E-15 118.2 9.5 74 163-240 4-78 (260)
88 KOG1190 Polypyrimidine tract-b 99.1 7E-10 1.5E-14 116.5 14.3 161 72-241 297-490 (492)
89 PLN03213 repressor of silencin 99.1 8.8E-11 1.9E-15 125.3 7.8 78 69-150 7-87 (759)
90 KOG1190 Polypyrimidine tract-b 99.1 2.5E-09 5.4E-14 112.4 17.4 163 74-246 152-377 (492)
91 KOG0107 Alternative splicing f 99.1 1.8E-10 3.8E-15 107.9 7.0 78 162-244 9-87 (195)
92 KOG4207 Predicted splicing fac 99.1 1.2E-10 2.7E-15 111.4 6.0 81 162-242 12-93 (256)
93 smart00362 RRM_2 RNA recogniti 99.1 2.7E-10 5.8E-15 95.1 7.2 70 74-145 1-71 (72)
94 KOG0130 RNA-binding protein RB 99.1 2.7E-10 5.9E-15 101.6 7.4 85 159-243 68-153 (170)
95 KOG0108 mRNA cleavage and poly 99.1 4.6E-10 9.9E-15 124.5 10.7 78 73-150 19-97 (435)
96 KOG0114 Predicted RNA-binding 99.1 5.4E-10 1.2E-14 95.2 8.5 80 161-243 16-96 (124)
97 PLN03213 repressor of silencin 99.1 3.2E-10 6.9E-15 121.1 8.6 76 162-241 9-87 (759)
98 KOG4212 RNA-binding protein hn 99.0 2E-09 4.4E-14 113.6 13.7 72 163-239 536-608 (608)
99 KOG0111 Cyclophilin-type pepti 99.0 1.2E-10 2.5E-15 112.3 4.1 85 69-153 7-92 (298)
100 smart00360 RRM RNA recognition 99.0 4.6E-10 1E-14 93.3 6.9 69 77-145 1-70 (71)
101 smart00362 RRM_2 RNA recogniti 99.0 8.3E-10 1.8E-14 92.1 8.2 71 165-237 1-72 (72)
102 KOG0114 Predicted RNA-binding 99.0 4.8E-10 1E-14 95.5 6.5 77 71-150 17-94 (124)
103 smart00360 RRM RNA recognition 99.0 1.1E-09 2.4E-14 91.0 7.7 70 168-237 1-71 (71)
104 KOG0130 RNA-binding protein RB 99.0 4.8E-10 1E-14 100.0 5.0 87 65-151 65-152 (170)
105 PLN03121 nucleic acid binding 99.0 1.9E-09 4.2E-14 108.3 9.9 77 162-241 4-80 (243)
106 KOG0108 mRNA cleavage and poly 99.0 1.8E-09 4E-14 119.8 10.5 84 164-247 19-103 (435)
107 KOG0120 Splicing factor U2AF, 98.9 2E-09 4.4E-14 119.8 9.2 168 69-242 172-369 (500)
108 KOG4849 mRNA cleavage factor I 98.9 2.6E-08 5.7E-13 102.4 15.7 78 162-239 79-160 (498)
109 cd00590 RRM RRM (RNA recogniti 98.9 3.3E-09 7.1E-14 89.0 7.6 72 74-146 1-73 (74)
110 KOG0128 RNA-binding protein SA 98.9 3.6E-10 7.8E-15 129.2 2.1 153 71-246 666-819 (881)
111 KOG4210 Nuclear localization s 98.9 1.3E-09 2.8E-14 115.8 6.0 174 70-244 86-266 (285)
112 cd00590 RRM RRM (RNA recogniti 98.9 6.7E-09 1.4E-13 87.0 8.8 73 165-238 1-74 (74)
113 KOG0105 Alternative splicing f 98.9 7.9E-09 1.7E-13 97.3 9.2 79 162-243 5-84 (241)
114 KOG0415 Predicted peptidyl pro 98.9 3.9E-09 8.4E-14 108.8 7.4 116 35-150 199-318 (479)
115 KOG0226 RNA-binding proteins [ 98.9 1.5E-09 3.2E-14 107.6 4.2 171 70-241 94-269 (290)
116 KOG4454 RNA binding protein (R 98.8 5.5E-10 1.2E-14 108.0 0.5 135 68-224 5-144 (267)
117 smart00361 RRM_1 RNA recogniti 98.8 4.7E-09 1E-13 87.6 6.0 61 85-145 1-69 (70)
118 COG0724 RNA-binding proteins ( 98.8 7.6E-09 1.6E-13 111.6 9.1 79 163-241 115-194 (306)
119 KOG0112 Large RNA-binding prot 98.8 5.2E-09 1.1E-13 120.3 7.3 168 68-250 368-539 (975)
120 smart00361 RRM_1 RNA recogniti 98.8 9E-09 2E-13 85.9 7.0 60 177-236 2-69 (70)
121 KOG4849 mRNA cleavage factor I 98.8 3.4E-08 7.4E-13 101.6 12.0 74 72-145 80-156 (498)
122 PF13893 RRM_5: RNA recognitio 98.8 1.1E-08 2.3E-13 81.4 6.5 55 180-239 1-56 (56)
123 KOG0153 Predicted RNA-binding 98.7 9.7E-08 2.1E-12 99.1 12.9 78 158-241 223-302 (377)
124 KOG1365 RNA-binding protein Fu 98.7 1.2E-07 2.5E-12 99.1 12.2 169 69-238 57-239 (508)
125 KOG4208 Nucleolar RNA-binding 98.6 5.3E-08 1.1E-12 94.3 7.2 84 66-149 43-128 (214)
126 KOG0415 Predicted peptidyl pro 98.6 2.7E-08 5.9E-13 102.7 5.5 84 160-243 236-320 (479)
127 KOG4208 Nucleolar RNA-binding 98.6 8.6E-08 1.9E-12 92.9 7.6 83 160-242 46-130 (214)
128 KOG4206 Spliceosomal protein s 98.6 2.5E-07 5.5E-12 91.4 10.9 82 163-247 9-95 (221)
129 PF13893 RRM_5: RNA recognitio 98.6 3.7E-08 8.1E-13 78.2 3.8 55 89-148 1-56 (56)
130 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.3E-07 2.9E-12 102.9 7.4 83 69-151 402-485 (940)
131 KOG1456 Heterogeneous nuclear 98.5 5.3E-06 1.1E-10 86.7 18.6 206 27-242 31-363 (494)
132 KOG0153 Predicted RNA-binding 98.4 3E-07 6.4E-12 95.6 6.7 80 65-150 221-302 (377)
133 KOG4660 Protein Mei2, essentia 98.4 5.7E-06 1.2E-10 91.6 15.0 183 42-241 50-249 (549)
134 KOG1457 RNA binding protein (c 98.3 6.9E-06 1.5E-10 80.3 12.5 87 162-248 33-124 (284)
135 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.1E-06 2.3E-11 96.0 7.5 82 162-243 404-486 (940)
136 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.7E-11 96.9 7.7 79 72-150 288-366 (419)
137 KOG1924 RhoA GTPase effector D 98.3 5.8E-06 1.3E-10 93.9 11.9 58 400-458 704-767 (1102)
138 KOG0226 RNA-binding proteins [ 98.2 9.6E-07 2.1E-11 88.0 4.6 84 66-149 184-268 (290)
139 KOG0151 Predicted splicing reg 98.2 5.8E-06 1.3E-10 93.2 10.6 82 159-240 170-255 (877)
140 KOG2193 IGF-II mRNA-binding pr 98.2 2.4E-07 5.3E-12 97.8 -0.2 152 73-242 2-157 (584)
141 KOG0116 RasGAP SH3 binding pro 98.2 8.9E-06 1.9E-10 90.2 11.5 80 163-242 288-367 (419)
142 KOG4209 Splicing factor RNPS1, 98.2 1.4E-06 3.1E-11 89.6 4.9 90 62-151 91-180 (231)
143 KOG1924 RhoA GTPase effector D 98.1 1.8E-05 4E-10 90.0 11.6 21 828-848 1063-1083(1102)
144 KOG0533 RRM motif-containing p 98.1 7.3E-06 1.6E-10 84.0 7.7 83 161-244 81-164 (243)
145 KOG4209 Splicing factor RNPS1, 98.1 1.4E-05 3E-10 82.4 9.0 82 160-242 98-180 (231)
146 KOG0533 RRM motif-containing p 97.9 1.5E-05 3.3E-10 81.7 6.6 79 70-149 81-160 (243)
147 KOG0151 Predicted splicing reg 97.9 1.4E-05 3.1E-10 90.1 5.9 85 65-149 167-255 (877)
148 KOG1548 Transcription elongati 97.9 2.3E-05 5.1E-10 81.7 7.0 78 162-240 133-219 (382)
149 KOG4454 RNA binding protein (R 97.9 2.6E-05 5.7E-10 76.1 6.8 77 162-240 8-85 (267)
150 KOG4660 Protein Mei2, essentia 97.9 1.4E-05 3E-10 88.7 5.0 71 160-235 72-143 (549)
151 KOG4307 RNA binding protein RB 97.9 2.4E-05 5.1E-10 88.0 6.8 169 70-240 309-512 (944)
152 PF04059 RRM_2: RNA recognitio 97.8 6.8E-05 1.5E-09 65.8 8.0 78 164-241 2-86 (97)
153 KOG0128 RNA-binding protein SA 97.7 7.7E-06 1.7E-10 94.6 0.5 164 68-231 567-735 (881)
154 PF04059 RRM_2: RNA recognitio 97.7 0.0001 2.2E-09 64.7 7.1 62 73-134 2-65 (97)
155 KOG0129 Predicted RNA-binding 97.5 0.00022 4.9E-09 78.6 8.3 107 27-133 259-432 (520)
156 KOG4676 Splicing factor, argin 97.5 4.3E-05 9.4E-10 80.7 2.5 153 72-228 7-212 (479)
157 KOG0106 Alternative splicing f 97.5 0.00011 2.5E-09 73.7 4.7 71 164-242 2-73 (216)
158 KOG4210 Nuclear localization s 97.3 0.00021 4.5E-09 76.4 4.3 80 72-151 184-264 (285)
159 PF11608 Limkain-b1: Limkain b 97.1 0.00088 1.9E-08 55.9 5.1 69 164-242 3-77 (90)
160 PF08777 RRM_3: RNA binding mo 97.1 0.00087 1.9E-08 60.4 5.3 69 164-238 2-76 (105)
161 smart00733 Mterf Mitochondrial 97.0 0.00058 1.3E-08 46.3 2.7 30 794-824 2-31 (31)
162 KOG2591 c-Mpl binding protein, 96.9 0.015 3.2E-07 64.8 14.1 72 161-239 173-249 (684)
163 KOG1995 Conserved Zn-finger pr 96.9 0.0011 2.3E-08 70.4 5.2 83 69-151 63-154 (351)
164 PF11608 Limkain-b1: Limkain b 96.9 0.0015 3.3E-08 54.5 4.8 68 73-150 3-76 (90)
165 COG5175 MOT2 Transcriptional r 96.8 0.002 4.3E-08 67.0 6.2 81 162-242 113-203 (480)
166 KOG1995 Conserved Zn-finger pr 96.8 0.0011 2.3E-08 70.4 3.9 83 161-243 64-155 (351)
167 KOG3152 TBP-binding protein, a 96.7 0.0013 2.8E-08 66.3 3.9 72 71-142 73-157 (278)
168 KOG0115 RNA-binding protein p5 96.7 0.004 8.6E-08 63.0 6.9 86 127-226 7-93 (275)
169 KOG2314 Translation initiation 96.6 0.0056 1.2E-07 68.1 8.0 88 33-134 31-125 (698)
170 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0055 1.2E-07 47.6 5.0 52 164-222 2-53 (53)
171 PF08777 RRM_3: RNA binding mo 96.4 0.0044 9.5E-08 55.9 4.8 56 73-134 2-57 (105)
172 COG5175 MOT2 Transcriptional r 96.3 0.003 6.4E-08 65.7 3.5 77 73-149 115-201 (480)
173 KOG4676 Splicing factor, argin 96.2 0.013 2.8E-07 62.6 7.5 76 164-239 8-86 (479)
174 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.011 2.3E-07 46.0 5.2 52 73-131 2-53 (53)
175 KOG4307 RNA binding protein RB 96.2 0.14 3.1E-06 58.8 16.0 70 165-240 4-75 (944)
176 smart00733 Mterf Mitochondrial 96.2 0.003 6.6E-08 42.7 2.0 28 645-673 3-30 (31)
177 KOG2314 Translation initiation 96.0 0.021 4.5E-07 63.8 8.4 78 161-239 56-141 (698)
178 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.017 3.7E-07 51.2 5.9 77 71-148 5-89 (100)
179 KOG0112 Large RNA-binding prot 95.9 0.012 2.6E-07 69.3 6.2 118 27-150 372-530 (975)
180 KOG2416 Acinus (induces apopto 95.7 0.017 3.7E-07 64.8 6.2 78 160-243 441-523 (718)
181 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.042 9.2E-07 48.7 6.9 78 162-240 5-90 (100)
182 KOG3152 TBP-binding protein, a 95.4 0.0083 1.8E-07 60.7 2.0 71 163-233 74-157 (278)
183 KOG1855 Predicted RNA-binding 94.9 0.1 2.2E-06 56.8 8.5 66 161-226 229-307 (484)
184 KOG1855 Predicted RNA-binding 94.8 0.022 4.7E-07 61.8 3.3 68 70-137 229-309 (484)
185 PF08952 DUF1866: Domain of un 93.8 0.14 3E-06 48.4 6.0 77 66-150 21-106 (146)
186 KOG2202 U2 snRNP splicing fact 93.8 0.025 5.4E-07 57.6 1.1 64 178-242 83-148 (260)
187 KOG1923 Rac1 GTPase effector F 93.7 0.26 5.7E-06 57.6 9.1 75 490-567 491-573 (830)
188 KOG1996 mRNA splicing factor [ 93.5 0.13 2.9E-06 53.0 5.8 65 177-241 300-366 (378)
189 KOG2193 IGF-II mRNA-binding pr 93.1 0.055 1.2E-06 58.3 2.3 79 164-248 2-82 (584)
190 PF15023 DUF4523: Protein of u 92.9 0.24 5.2E-06 45.9 5.7 76 67-149 81-160 (166)
191 KOG2893 Zn finger protein [Gen 92.3 0.97 2.1E-05 45.3 9.6 10 393-402 274-283 (341)
192 PF10309 DUF2414: Protein of u 91.9 0.57 1.2E-05 37.5 6.0 55 163-225 5-62 (62)
193 PF08675 RNA_bind: RNA binding 91.8 0.36 7.7E-06 40.7 5.1 57 70-134 6-62 (87)
194 PF08675 RNA_bind: RNA binding 91.8 0.58 1.3E-05 39.5 6.3 55 163-226 9-63 (87)
195 KOG0115 RNA-binding protein p5 91.7 0.14 3.1E-06 52.1 3.1 61 73-134 32-92 (275)
196 PF10309 DUF2414: Protein of u 91.7 0.73 1.6E-05 36.9 6.4 52 73-133 6-61 (62)
197 KOG2202 U2 snRNP splicing fact 91.3 0.06 1.3E-06 54.9 0.1 60 88-148 84-145 (260)
198 KOG2236 Uncharacterized conser 91.3 1.8 3.9E-05 48.1 11.2 8 209-216 318-325 (483)
199 PF15023 DUF4523: Protein of u 91.2 0.5 1.1E-05 43.9 5.8 74 160-240 83-160 (166)
200 PF08952 DUF1866: Domain of un 90.1 0.97 2.1E-05 42.8 6.8 74 161-242 25-107 (146)
201 cd04790 HTH_Cfa-like_unk Helix 90.0 1.5 3.2E-05 43.5 8.6 143 458-609 20-167 (172)
202 KOG1923 Rac1 GTPase effector F 89.2 2.4 5.1E-05 50.1 10.4 10 76-85 78-87 (830)
203 KOG2068 MOT2 transcription fac 89.1 0.17 3.7E-06 53.9 1.2 81 162-242 76-163 (327)
204 KOG1996 mRNA splicing factor [ 89.0 0.68 1.5E-05 48.0 5.3 63 86-148 300-364 (378)
205 KOG2236 Uncharacterized conser 88.8 2.3 5E-05 47.3 9.5 13 116-128 261-273 (483)
206 KOG4574 RNA-binding protein (c 87.8 2 4.3E-05 51.0 8.7 71 166-242 301-374 (1007)
207 KOG4672 Uncharacterized conser 86.2 5.5 0.00012 43.5 10.3 24 166-189 219-242 (487)
208 KOG2591 c-Mpl binding protein, 85.5 2 4.2E-05 48.7 6.8 69 72-147 175-248 (684)
209 KOG0260 RNA polymerase II, lar 85.5 15 0.00033 45.7 14.4 19 207-225 1412-1430(1605)
210 KOG0260 RNA polymerase II, lar 84.0 18 0.00039 45.1 14.1 11 97-107 1256-1266(1605)
211 PF07292 NID: Nmi/IFP 35 domai 83.9 0.86 1.9E-05 39.3 2.5 69 117-185 1-74 (88)
212 PHA03247 large tegument protei 83.6 7.2 0.00016 52.4 11.4 22 490-513 3100-3121(3151)
213 KOG2135 Proteins containing th 83.5 0.62 1.3E-05 51.6 1.9 74 72-151 372-446 (526)
214 PF11955 PORR: Plant organelle 82.8 5.2 0.00011 44.0 8.7 244 597-857 45-331 (335)
215 KOG4285 Mitotic phosphoprotein 82.5 11 0.00025 39.6 10.3 76 163-245 197-273 (350)
216 KOG2068 MOT2 transcription fac 82.5 0.66 1.4E-05 49.5 1.6 78 72-149 77-161 (327)
217 cd04790 HTH_Cfa-like_unk Helix 81.1 4.8 0.0001 39.9 7.0 24 627-650 49-72 (172)
218 KOG2135 Proteins containing th 80.8 0.91 2E-05 50.3 1.9 70 168-243 377-447 (526)
219 PF14111 DUF4283: Domain of un 80.1 3.9 8.3E-05 39.5 6.0 119 73-196 16-138 (153)
220 PF03467 Smg4_UPF3: Smg-4/UPF3 79.5 3.3 7.2E-05 41.1 5.3 80 162-241 6-97 (176)
221 KOG4285 Mitotic phosphoprotein 79.3 2.7 5.8E-05 44.1 4.6 63 72-141 197-259 (350)
222 PHA03247 large tegument protei 79.1 14 0.00031 49.8 11.8 6 527-532 3102-3107(3151)
223 KOG2199 Signal transducing ada 78.1 8 0.00017 42.3 7.8 10 124-133 166-175 (462)
224 PF04847 Calcipressin: Calcipr 77.1 5.2 0.00011 40.0 5.9 60 176-241 8-70 (184)
225 PHA03378 EBNA-3B; Provisional 76.9 24 0.00051 41.3 11.4 10 164-173 539-548 (991)
226 TIGR00601 rad23 UV excision re 75.6 25 0.00055 39.4 11.3 114 664-799 247-361 (378)
227 PF03467 Smg4_UPF3: Smg-4/UPF3 74.6 2.5 5.4E-05 42.0 2.9 65 70-134 5-75 (176)
228 KOG0307 Vesicle coat complex C 74.5 45 0.00097 41.6 13.7 7 181-187 665-671 (1049)
229 KOG1984 Vesicle coat complex C 74.4 37 0.00081 41.2 12.6 35 775-811 835-870 (1007)
230 PHA03378 EBNA-3B; Provisional 73.7 26 0.00056 41.0 10.7 53 366-418 864-919 (991)
231 KOG3671 Actin regulatory prote 73.0 25 0.00054 39.8 10.1 20 114-133 115-134 (569)
232 KOG0119 Splicing factor 1/bran 72.0 36 0.00077 38.6 11.1 19 116-134 206-224 (554)
233 KOG0307 Vesicle coat complex C 69.1 45 0.00097 41.6 12.0 10 210-219 669-678 (1049)
234 PF07576 BRAP2: BRCA1-associat 67.9 40 0.00087 30.6 8.8 64 163-228 13-77 (110)
235 PF11767 SET_assoc: Histone ly 67.2 18 0.00039 29.5 5.7 53 174-235 11-64 (66)
236 KOG0566 Inositol-1,4,5-triphos 66.7 24 0.00053 43.1 9.0 57 83-147 874-931 (1080)
237 PF07576 BRAP2: BRCA1-associat 66.6 26 0.00057 31.8 7.3 60 73-134 14-74 (110)
238 KOG1984 Vesicle coat complex C 65.9 60 0.0013 39.5 11.9 30 809-838 834-865 (1007)
239 KOG3671 Actin regulatory prote 65.4 81 0.0018 35.9 12.1 11 395-405 493-503 (569)
240 KOG2416 Acinus (induces apopto 64.4 3.4 7.3E-05 47.3 1.4 63 68-136 440-503 (718)
241 KOG1985 Vesicle coat complex C 60.3 44 0.00096 40.4 9.5 22 799-820 759-780 (887)
242 PRK15319 AIDA autotransporter- 59.8 13 0.00029 48.6 5.5 17 396-412 1741-1757(2039)
243 PF04695 Pex14_N: Peroxisomal 59.0 14 0.00029 35.1 4.3 29 775-803 23-51 (136)
244 KOG1676 K-homology type RNA bi 57.5 72 0.0016 37.2 10.3 11 163-173 275-285 (600)
245 KOG2318 Uncharacterized conser 57.5 89 0.0019 36.3 10.9 129 67-240 169-306 (650)
246 KOG2253 U1 snRNP complex, subu 57.4 6 0.00013 46.1 1.9 78 61-147 29-107 (668)
247 COG5178 PRP8 U5 snRNP spliceos 57.0 8 0.00017 47.5 2.8 9 449-457 189-197 (2365)
248 KOG0011 Nucleotide excision re 55.5 63 0.0014 34.9 8.8 116 591-724 137-266 (340)
249 PRK15319 AIDA autotransporter- 55.2 19 0.00042 47.3 5.9 8 73-80 1348-1355(2039)
250 PRK14135 recX recombination re 54.4 1.7E+02 0.0038 31.0 12.5 22 591-612 180-201 (263)
251 KOG2253 U1 snRNP complex, subu 54.4 8.5 0.00019 44.9 2.5 70 160-238 37-107 (668)
252 PF04847 Calcipressin: Calcipr 54.0 22 0.00047 35.6 5.0 59 85-149 8-69 (184)
253 KOG1830 Wiskott Aldrich syndro 53.4 3.7E+02 0.008 30.2 15.4 13 387-399 468-480 (518)
254 PF11955 PORR: Plant organelle 50.9 32 0.00069 38.0 6.1 33 775-807 119-152 (335)
255 KOG0162 Myosin class I heavy c 47.9 1E+02 0.0023 36.7 9.6 9 72-80 673-681 (1106)
256 PF04695 Pex14_N: Peroxisomal 47.0 22 0.00047 33.8 3.6 39 646-688 12-50 (136)
257 PRK00117 recX recombination re 46.4 2.2E+02 0.0047 27.5 10.7 73 591-684 80-152 (157)
258 KOG4590 Signal transduction pr 46.0 79 0.0017 35.7 8.2 11 210-220 78-88 (409)
259 KOG2391 Vacuolar sorting prote 45.9 65 0.0014 34.9 7.1 7 207-213 86-92 (365)
260 KOG3895 Synaptic vesicle prote 45.5 1.3E+02 0.0028 32.8 9.2 7 191-197 346-352 (488)
261 COG5178 PRP8 U5 snRNP spliceos 45.1 17 0.00037 44.9 3.0 13 441-453 319-331 (2365)
262 KOG1985 Vesicle coat complex C 44.3 1E+02 0.0022 37.5 9.1 10 844-853 826-835 (887)
263 PRK14136 recX recombination re 44.1 3.8E+02 0.0082 29.1 12.5 26 774-799 277-302 (309)
264 COG2137 OraA Uncharacterized p 43.4 97 0.0021 30.7 7.6 86 479-586 29-116 (174)
265 KOG0804 Cytoplasmic Zn-finger 43.2 67 0.0014 36.1 6.9 62 71-134 73-135 (493)
266 PRK14136 recX recombination re 42.7 1.3E+02 0.0029 32.4 8.9 19 629-647 282-300 (309)
267 KOG4574 RNA-binding protein (c 42.6 12 0.00027 44.8 1.4 58 71-134 297-354 (1007)
268 PF14490 HHH_4: Helix-hairpin- 42.1 36 0.00077 29.9 4.0 20 592-611 11-30 (94)
269 PF04625 DEC-1_N: DEC-1 protei 41.9 1.9E+02 0.004 31.0 9.5 14 232-245 36-49 (407)
270 KOG0905 Phosphoinositide 3-kin 41.7 1.7E+02 0.0037 37.2 10.5 50 834-884 947-1002(1639)
271 PF11767 SET_assoc: Histone ly 41.5 56 0.0012 26.7 4.6 52 83-143 11-63 (66)
272 PRK14548 50S ribosomal protein 40.9 94 0.002 26.7 6.1 59 74-135 22-82 (84)
273 KOG1830 Wiskott Aldrich syndro 40.8 4E+02 0.0086 29.9 12.1 10 45-54 53-62 (518)
274 PF14490 HHH_4: Helix-hairpin- 40.4 66 0.0014 28.2 5.4 69 555-644 6-75 (94)
275 KOG4019 Calcineurin-mediated s 39.8 77 0.0017 31.2 6.0 74 164-243 11-91 (193)
276 PF07499 RuvA_C: RuvA, C-termi 39.3 34 0.00073 25.8 2.9 28 520-547 2-29 (47)
277 KOG4483 Uncharacterized conser 39.0 1.2E+02 0.0025 33.6 7.8 95 36-137 348-450 (528)
278 PF02631 RecX: RecX family; I 38.5 1.8E+02 0.0038 26.7 8.3 24 775-798 95-118 (121)
279 KOG0917 Uncharacterized conser 36.6 2.6E+02 0.0057 29.4 9.5 18 176-193 114-131 (338)
280 KOG3168 U1 snRNP component [Tr 36.5 1.1E+02 0.0024 29.5 6.3 6 165-170 25-30 (177)
281 PRK14959 DNA polymerase III su 36.4 1.7E+02 0.0036 35.3 9.4 8 73-80 121-128 (624)
282 PRK14086 dnaA chromosomal repl 36.3 4.3E+02 0.0093 31.9 12.7 12 230-241 78-89 (617)
283 KOG3294 WW domain binding prot 35.5 3.5E+02 0.0076 28.0 10.0 18 177-194 66-83 (261)
284 KOG3454 U1 snRNP-specific prot 34.6 4.4E+02 0.0096 25.6 10.2 17 215-231 43-59 (165)
285 PRK14134 recX recombination re 34.5 2.7E+02 0.0058 30.1 10.0 86 590-684 183-278 (283)
286 TIGR03636 L23_arch archaeal ri 33.9 1.4E+02 0.003 25.3 6.0 57 74-133 15-73 (77)
287 PF07499 RuvA_C: RuvA, C-termi 33.3 46 0.001 25.0 2.8 34 775-808 3-36 (47)
288 KOG4410 5-formyltetrahydrofola 33.1 78 0.0017 33.2 5.2 52 71-127 329-380 (396)
289 COG1125 OpuBA ABC-type proline 32.9 57 0.0012 34.3 4.2 117 774-890 72-246 (309)
290 PF10567 Nab6_mRNP_bdg: RNA-re 31.7 59 0.0013 34.5 4.1 157 69-226 12-212 (309)
291 KOG0917 Uncharacterized conser 31.4 4E+02 0.0086 28.1 9.8 11 89-99 118-128 (338)
292 cd00194 UBA Ubiquitin Associat 31.1 72 0.0016 22.4 3.4 23 777-799 3-25 (38)
293 PF00627 UBA: UBA/TS-N domain; 30.7 71 0.0015 22.5 3.3 23 777-799 4-26 (37)
294 PF14518 Haem_oxygenas_2: Iron 30.6 48 0.001 29.6 3.1 76 455-539 22-99 (106)
295 PRK00117 recX recombination re 30.3 5E+02 0.011 24.9 10.6 21 591-611 131-151 (157)
296 KOG4264 Nucleo-cytoplasmic pro 29.9 2.3E+02 0.0049 32.6 8.4 9 206-214 442-450 (694)
297 smart00165 UBA Ubiquitin assoc 29.8 80 0.0017 22.0 3.4 23 777-799 3-25 (37)
298 PRK14948 DNA polymerase III su 29.3 3.2E+02 0.007 33.1 10.5 34 207-241 474-513 (620)
299 KOG4213 RNA-binding protein La 29.2 39 0.00085 33.0 2.2 67 72-143 111-179 (205)
300 COG4974 XerD Site-specific rec 28.6 7.6E+02 0.017 26.7 11.7 149 394-609 6-157 (300)
301 PF03468 XS: XS domain; Inter 28.3 72 0.0016 29.3 3.7 51 74-127 10-69 (116)
302 KOG2375 Protein interacting wi 28.2 2.1E+02 0.0046 34.9 8.4 9 119-127 297-305 (756)
303 PF07777 MFMR: G-box binding p 27.9 3.1E+02 0.0068 27.4 8.2 15 294-308 62-76 (189)
304 KOG4410 5-formyltetrahydrofola 27.6 1.6E+02 0.0035 31.0 6.3 47 164-215 331-377 (396)
305 KOG0804 Cytoplasmic Zn-finger 27.5 1.3E+02 0.0028 34.0 6.0 64 163-228 74-138 (493)
306 COG3620 Predicted transcriptio 27.4 2.2E+02 0.0047 27.7 6.7 24 615-638 74-97 (187)
307 CHL00185 ycf59 magnesium-proto 27.1 5.8E+02 0.013 27.8 10.5 45 613-671 156-200 (351)
308 PF15513 DUF4651: Domain of un 26.7 1.3E+02 0.0028 24.2 4.3 18 87-104 9-26 (62)
309 TIGR01448 recD_rel helicase, p 26.4 1.5E+02 0.0033 36.7 7.2 30 591-620 145-185 (720)
310 PHA02591 hypothetical protein; 26.3 45 0.00097 27.9 1.7 50 493-542 19-69 (83)
311 PF03276 Gag_spuma: Spumavirus 26.1 3.7E+02 0.0079 31.4 9.3 23 174-196 82-113 (582)
312 PF03880 DbpA: DbpA RNA bindin 26.0 96 0.0021 25.8 3.8 58 173-239 11-74 (74)
313 PRK09875 putative hydrolase; P 25.7 4E+02 0.0086 28.9 9.5 26 662-687 263-288 (292)
314 TIGR02029 AcsF magnesium-proto 25.2 6.8E+02 0.015 27.2 10.5 45 613-671 150-194 (337)
315 PRK14950 DNA polymerase III su 24.8 2.9E+02 0.0062 33.3 9.0 16 72-88 121-136 (585)
316 TIGR02542 B_forsyth_147 Bacter 24.6 1.7E+02 0.0037 26.4 5.1 116 80-215 11-129 (145)
317 KOG4264 Nucleo-cytoplasmic pro 24.6 3E+02 0.0065 31.7 8.2 7 91-97 228-234 (694)
318 PRK11613 folP dihydropteroate 24.2 1.7E+02 0.0037 31.5 6.2 70 808-884 163-232 (282)
319 COG4303 EutB Ethanolamine ammo 24.0 33 0.00071 36.6 0.7 25 441-465 413-437 (453)
320 PRK14135 recX recombination re 23.9 5.9E+02 0.013 26.9 10.5 20 592-611 238-257 (263)
321 PLN02508 magnesium-protoporphy 23.9 6.8E+02 0.015 27.4 10.3 45 613-671 156-200 (357)
322 KOG4368 Predicted RNA binding 23.8 4.8E+02 0.01 30.6 9.6 9 778-786 723-731 (757)
323 KOG1029 Endocytic adaptor prot 23.7 2.7E+02 0.0059 33.7 7.9 31 387-422 208-238 (1118)
324 PRK12333 nucleoside triphospha 23.4 4.1E+02 0.0088 27.1 8.2 23 485-507 3-26 (204)
325 KOG2932 E3 ubiquitin ligase in 23.1 4.3E+02 0.0094 28.4 8.5 7 138-144 102-108 (389)
326 PRK13654 magnesium-protoporphy 23.0 6E+02 0.013 27.8 9.7 63 613-689 160-226 (355)
327 PRK00116 ruvA Holliday junctio 22.9 1.8E+02 0.0038 29.4 5.8 111 509-632 56-191 (192)
328 TIGR01448 recD_rel helicase, p 22.8 2.1E+02 0.0044 35.5 7.4 75 596-676 119-206 (720)
329 KOG2932 E3 ubiquitin ligase in 22.8 9.9E+02 0.021 25.8 11.3 6 347-352 369-374 (389)
330 COG1393 ArsC Arsenate reductas 22.8 59 0.0013 29.9 2.1 70 456-550 18-92 (117)
331 cd01047 ACSF Aerobic Cyclase S 22.2 6.9E+02 0.015 27.0 9.9 45 613-671 140-184 (323)
332 PRK14137 recX recombination re 22.2 4.9E+02 0.011 26.3 8.7 22 627-648 157-178 (195)
333 PRK14134 recX recombination re 22.0 1E+03 0.022 25.6 14.5 24 775-798 255-278 (283)
334 KOG4168 Predicted RNA polymera 21.7 5.8E+02 0.013 24.3 8.1 54 624-682 71-124 (149)
335 COG1125 OpuBA ABC-type proline 21.5 2.1E+02 0.0047 30.2 5.9 86 771-856 106-239 (309)
336 KOG2391 Vacuolar sorting prote 21.0 3.3E+02 0.0072 29.7 7.4 11 395-405 228-238 (365)
337 smart00596 PRE_C2HC PRE_C2HC d 21.0 1.9E+02 0.0042 23.8 4.4 60 87-148 2-62 (69)
338 PF03276 Gag_spuma: Spumavirus 20.9 4.8E+02 0.011 30.4 9.0 17 175-191 133-149 (582)
339 KOG4590 Signal transduction pr 20.8 4.4E+02 0.0096 29.9 8.7 11 216-226 91-101 (409)
340 PF02631 RecX: RecX family; I 20.7 6.5E+02 0.014 22.9 10.3 27 586-612 92-118 (121)
341 cd08319 Death_RAIDD Death doma 20.6 3.7E+02 0.0081 23.0 6.4 35 595-633 19-53 (83)
342 PF07530 PRE_C2HC: Associated 20.5 1.8E+02 0.004 23.9 4.3 61 87-149 2-63 (68)
343 PF07271 Cytadhesin_P30: Cytad 20.4 1E+03 0.023 25.2 12.3 7 138-144 58-64 (279)
344 cd08306 Death_FADD Fas-associa 20.3 1.6E+02 0.0036 25.3 4.2 37 594-634 18-54 (86)
345 PF05616 Neisseria_TspB: Neiss 20.3 1.4E+03 0.03 26.5 13.5 8 72-79 87-94 (502)
346 PF13331 DUF4093: Domain of un 20.1 5.8E+02 0.013 22.1 7.6 81 672-797 6-87 (87)
No 1
>PLN03196 MOC1-like protein; Provisional
Probab=100.00 E-value=9.5e-59 Score=527.03 Aligned_cols=367 Identities=20% Similarity=0.309 Sum_probs=276.1
Q ss_pred hhhhcCCCCCCCCCCCCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhccc-ChhHHHHHHHHHHHcCCChh
Q 045707 458 FFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQF-DVGVFQSKLHAYEMLGLSQS 536 (901)
Q Consensus 458 f~es~G~~~~~~~~~~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~-~~~~l~~~l~~L~~lG~~~~ 536 (901)
||+|+|+++.++..... -++-+.+.+.+.+|.++||+.++|+ ++|.++.+ ...++.++++||+++|++.+
T Consensus 69 ~L~~lgi~~~~l~~~~~-----p~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~ 139 (487)
T PLN03196 69 FLRGIGIDPDELDGLEL-----PSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRS 139 (487)
T ss_pred HHHHcCCCchhhhccCC-----CccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHH
Confidence 78899999999876432 1366688899999999999999998 68999999 56789999999999999999
Q ss_pred hhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccc---cCCHH-HHHHHHHHHHhcCCChhHHhhHhhc
Q 045707 537 FISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQE---TFNWS-MMLRFLRLFRNLGCSDEQLGGLIRQ 612 (901)
Q Consensus 537 ~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~---~~~~~-~~~~~l~fL~~~G~s~~~i~~li~~ 612 (901)
+|.++|.++|.||.++++.+++|+++||+++|++.+++++++.... .++.. .+..+++||.++|++.++|++++.+
T Consensus 140 ~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~ 219 (487)
T PLN03196 140 SLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTR 219 (487)
T ss_pred HHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 9999999999999999999999998888886666666665554322 12222 2334555555555555555555555
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccccccc
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVGSC 692 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~~~ 692 (901)
+|+||+++++++++|+++||+++|++.++|+++|.++|++|+++++++++|+++||+++|++.+++..++.++|.+++.+
T Consensus 220 ~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s 299 (487)
T PLN03196 220 FPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLD 299 (487)
T ss_pred CcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEec
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555543
Q ss_pred cccch---HHHH-HHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHH
Q 045707 693 TLKKT---NTIL-AYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHF 768 (901)
Q Consensus 693 ~~~~~---~~~l-~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~ 768 (901)
..+++ ..++ ..+|++.+++..++.++|+++.
T Consensus 300 ~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~--------------------------------------------- 334 (487)
T PLN03196 300 LKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVS--------------------------------------------- 334 (487)
T ss_pred HHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhc---------------------------------------------
Confidence 22222 2222 3445555555555555554443
Q ss_pred hcccHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCcccccccc-hhHHHH
Q 045707 769 RGRGAE-LQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEE-RIKLRF 846 (901)
Q Consensus 769 ~~~~~~-l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysle-ri~pR~ 846 (901)
.+++ |++|++||+++||+.+||+.||+++|+||++|.++|++|++||+++||++.++|++||+||+|||| ||+|||
T Consensus 335 --lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~ 412 (487)
T PLN03196 335 --LNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY 412 (487)
T ss_pred --ccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence 3444 899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCCCCCCCcchhhcccHHHHHHHhcccCCCh
Q 045707 847 LMYNWLKDEGWIDGRLASSTLIAYSNKTFMQQFVNRHPKG 886 (901)
Q Consensus 847 ~~~~~L~~~g~~~~~~sl~~~l~~sd~~F~~~~v~~~~~~ 886 (901)
++ |+++|+ .++|+++|+|||++|+++||.+|.++
T Consensus 413 ~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~ 446 (487)
T PLN03196 413 ER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEG 446 (487)
T ss_pred HH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhcccc
Confidence 98 899999 78999999999999999999999764
No 2
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=100.00 E-value=7.3e-47 Score=421.93 Aligned_cols=335 Identities=23% Similarity=0.359 Sum_probs=256.5
Q ss_pred HHHhhcCccCchhhhHHhhchhhccc-ChhHHHHHHHHHHHcCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCC
Q 045707 491 HVLCNYGVARNKIGKILKEAREVFQF-DVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEI 569 (901)
Q Consensus 491 ~~L~~~g~~~~~i~~l~~~~~~i~~~-~~~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv 569 (901)
..|.++||+...|.+++++.|.++.+ +...+.++++||.++|++..++.+++.++|.+|..++++++.|++++|+++|+
T Consensus 2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~ 81 (345)
T PF02536_consen 2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL 81 (345)
T ss_dssp HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence 35889999999999999999998888 89999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcccc----cCCHHHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHH
Q 045707 570 ESCWIEEHLLEQE----TFNWSMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSI 645 (901)
Q Consensus 570 ~~~~l~~~l~~~~----~~~~~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~ 645 (901)
+.+++.+++.... .+.-..+...++||+++|++..++.+++..+|.++... +++.+.+++|.++|++.++++++
T Consensus 82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v 159 (345)
T PF02536_consen 82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV 159 (345)
T ss_dssp -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence 9999998876543 12223677899999999999988888888888776655 69999999999999999999999
Q ss_pred HhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccccccccc---cchHHHHHHcCCchhHHhHHHHhCchHH
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVGSCTL---KKTNTILAYLNVGKKRLCEYIQENPLEL 722 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~---~~~~~~l~~lg~~~~~l~~ii~~~P~~l 722 (901)
+.++|+++..+.+++++|+++||+++|++.+++.+++.++|.+|+.+.. +....++...|...+ .++.++|.++
T Consensus 160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il 236 (345)
T PF02536_consen 160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQIL 236 (345)
T ss_dssp HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---cccccccccc
Confidence 9999998999999999999999999999999999999999999986543 333334444444333 6666677666
Q ss_pred HHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHHhcccHHHHHHHHHHHHcCCCHHHHHHHHhhcCCc
Q 045707 723 KKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVSPQI 802 (901)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~~~G~s~~~v~~mi~~~P~i 802 (901)
.. ..+.++++++||.++||+.+||++||+++|+|
T Consensus 237 ~~----------------------------------------------~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~i 270 (345)
T PF02536_consen 237 SL----------------------------------------------SEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQI 270 (345)
T ss_dssp TH----------------------------------------------HHHHHHHHHHHHHTTT--HHHHHHHHHHSGGG
T ss_pred cc----------------------------------------------chHhHHHHHHHHHHhcCcHHHHHHHHHhCcch
Confidence 54 11338899999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHhcCCCccccccCCcccccccc-hhHHHHHHHHHHHHcCCCCCCCCcchhhcccHHHHHH
Q 045707 803 LNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEE-RIKLRFLMYNWLKDEGWIDGRLASSTLIAYSNKTFMQ 877 (901)
Q Consensus 803 L~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysle-ri~pR~~~~~~L~~~g~~~~~~sl~~~l~~sd~~F~~ 877 (901)
|++|.|+|++|++||+++||++.++|++||+||+|||| ||+|||+++++|+++|+ ...+++.+||++||++|++
T Consensus 271 L~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~~s~~~F~~ 345 (345)
T PF02536_consen 271 LSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLSCSDEEFLK 345 (345)
T ss_dssp GGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred hhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence 99999999999999999999999999999999999999 99999999999999997 6789999999999999974
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=100.00 E-value=9.9e-39 Score=363.31 Aligned_cols=371 Identities=16% Similarity=0.211 Sum_probs=317.7
Q ss_pred HHHHHHHHHHHHhhcCCcCcCChhhhhcCChHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCchhhhhcCCCCCCCCCC
Q 045707 393 RKEAQAAMLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERFENQLDVQRLIARFLRYHPINEFEPFFESLGLKPCEYSPF 472 (901)
Q Consensus 393 ~~~a~~~~~~~l~~~~~~~~~~a~~~~~~s~~~~~~l~~~~~~~~~~~~~~~r~l~~~~i~~~~~f~es~G~~~~~~~~~ 472 (901)
..+.++.+.+||. --||....++..- -|.-++.+-+++ .||+|+|++..++. .
T Consensus 59 ~~~~~~~~~~~L~-~lgi~~~~l~~~~--~p~~~~~~~~~l-----------------------~~L~s~G~~~~~i~-~ 111 (487)
T PLN03196 59 KLVNREKVLDFLR-GIGIDPDELDGLE--LPSTVDVMRERV-----------------------EFLHKLGLTIEDIN-E 111 (487)
T ss_pred hhhhHHHHHHHHH-HcCCCchhhhccC--CCccHHHHHHHH-----------------------HHHHHcCCChHHhc-c
Confidence 5667889999999 4899876665432 233333222221 58999999999998 4
Q ss_pred CCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhccc-ChhHHHHHHHHHHHcCCChhhhhhhhhcCceeeec
Q 045707 473 LPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQF-DVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIG 551 (901)
Q Consensus 473 ~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~-~~~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~ 551 (901)
.|. ++..+=+..+.+.+.+|.++|++..+|++++..+|.|+.. .+..|.++++||+++|++.++|.+++.++|.||++
T Consensus 112 ~P~-iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~ 190 (487)
T PLN03196 112 YPL-VLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGF 190 (487)
T ss_pred CcH-HhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcC
Confidence 563 2233335678899999999999999999999999999999 55799999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCcchhhhhhhcccc---cCCHH-HHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHH
Q 045707 552 DVNTEFVEVLQILKSMEIESCWIEEHLLEQE---TFNWS-MMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALT 627 (901)
Q Consensus 552 ~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~---~~~~~-~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p 627 (901)
+++..+.++++||.++|++.+++++++...+ .++.. .+..+++||.++|++.++|++++.++|++|+++++++++|
T Consensus 191 ~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp 270 (487)
T PLN03196 191 KLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKP 270 (487)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHH
Confidence 9999999999999999999999999988654 24333 4567999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHH-HHhhhchhHHHHHHHhCcccccc--ccccchHHHHHHc
Q 045707 628 MIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFL-FEIKMKVDEIGKILRCHFLLVGS--CTLKKTNTILAYL 704 (901)
Q Consensus 628 ~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL-~~~g~~~~~i~~~l~~~P~il~~--~~~~~~~~~l~~l 704 (901)
+++||.++|++.++++.++.++|.++++++++.+.+++.|| +++|++.+++.+++.++|.+++. +.+...+.++..+
T Consensus 271 ~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~ 350 (487)
T PLN03196 271 NVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGR 350 (487)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999 58999999999999999999995 4567788999999
Q ss_pred CCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHHhcccHHHHHHHHHHH-
Q 045707 705 NVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLV- 783 (901)
Q Consensus 705 g~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~- 783 (901)
|++.++++.+++++|++|... -+.|+++++||+
T Consensus 351 Gls~edI~~mv~k~P~lL~~S----------------------------------------------~~~l~~k~dFlvn 384 (487)
T PLN03196 351 GFSAQDVAKMVVRCPQILALN----------------------------------------------LEIMKPSLEFFKK 384 (487)
T ss_pred CCCHHHHHHHHHhCCceeecc----------------------------------------------HHHHHHHHHHHHH
Confidence 999999999999999999871 133789999999
Q ss_pred HcCCCHHHHHHHHhhcCCccccCHH-HHHHHHHHHHHhcCCCccccccCCcccccccchhHHHH
Q 045707 784 NAGLDRKDVCEMIRVSPQILNMKKD-VIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRF 846 (901)
Q Consensus 784 ~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~ 846 (901)
++|++.++|. ++|++|+||+| +|++++++|.+ -|+.. ....+|..|-++-.-|+
T Consensus 385 eMg~~~~~Iv----~fP~~LsySLEkRI~PR~~~L~~-kGl~~----sL~~~L~~sd~~F~~r~ 439 (487)
T PLN03196 385 EMKRPLKELV----EFPAYFTYGLESRIKPRYERVAK-KGIKC----SLAWFLNCSDDKFEQRM 439 (487)
T ss_pred HhCCCHHHHH----hChHHhccChhhhhHHHHHHHHH-cCCCC----CHHHHhccCHHHHHHHH
Confidence 8999988765 79999999999 99999999887 47732 33467777766665555
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-35 Score=290.94 Aligned_cols=214 Identities=26% Similarity=0.423 Sum_probs=183.3
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc--chhHHhhh------ccCCCC---CCCeEEEeCCCcCCCHHHHHHHHhh
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP--SIAEEIKS------VASADP---VHRKLFVRGLAWNTTSETLCAAFRV 95 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~--~~~~~~~~------~~~~~~---~~~~lfV~nLp~~~te~~L~~~F~~ 95 (901)
.-++|||+|+++++|+-|..+|+++|++.+ -+.++++- ..+..+ ..-.|||+.|...++.++|++.|.+
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~p 85 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAP 85 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhcc
Confidence 458999999999999999999999999954 22232221 111111 1346999999999999999999999
Q ss_pred cCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccccCCCcCC----------CCccccc
Q 045707 96 HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEGLSGVSA----------VPDLAQR 164 (901)
Q Consensus 96 ~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~~~----------~~~~~~~ 164 (901)
||+|.+++|++|..|+++||||||.|.+.++|++||..| |+.|++|.|+.+|+..+...... .....++
T Consensus 86 FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~Nt 165 (321)
T KOG0148|consen 86 FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNT 165 (321)
T ss_pred ccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCc
Confidence 999999999999999999999999999999999999998 57799999999999876533221 2345688
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
+|||||++..+||++|++.|++||.|.+|++..++ |||||+|++.|+|.+||..+|++ ++|..+++.|.+...
T Consensus 166 sVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 166 SVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred eEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 99999999999999999999999999999999875 69999999999999999999976 999999999998765
Q ss_pred CCC
Q 045707 244 GKP 246 (901)
Q Consensus 244 ~~~ 246 (901)
...
T Consensus 240 ~~~ 242 (321)
T KOG0148|consen 240 DGI 242 (321)
T ss_pred CCC
Confidence 433
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.4e-30 Score=297.04 Aligned_cols=175 Identities=21% Similarity=0.400 Sum_probs=155.5
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||||||+++|+++|+++|++||+|.+|++++|+.+|+++|||||+|.+.++|++|++.+ |..++|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999876 67799999999865
Q ss_pred cccCCCcC-----CCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHH
Q 045707 149 CEGLSGVS-----AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223 (901)
Q Consensus 149 ~~~~~~~~-----~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 223 (901)
........ .......++|||+||+.++++++|+++|+.||.|.++++.+|+.+|+++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 43221111 1112245799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-cCCcEEEEEeccCCCC
Q 045707 224 DPHKT-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 224 ~l~~~-i~g~~l~V~~a~~~~~ 244 (901)
.+|+. ++|+.|+|.++.++..
T Consensus 265 amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HhCCCeeCCeEEEEEecCCCcc
Confidence 99987 9999999999986543
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.6e-30 Score=306.79 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=179.9
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch----------------------hHHhhh-------------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI----------------------AEEIKS------------------- 64 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~----------------------~~~~~~------------------- 64 (901)
...+||++|+.++++++|.++|+.+|.+.. .+ ...+..
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 457999999999999999999999997621 00 000000
Q ss_pred ---ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc-
Q 045707 65 ---VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID- 139 (901)
Q Consensus 65 ---~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~- 139 (901)
........++|||+|||.++|+++|+++|++||.|.++.++.+. +|+++|||||+|.+.++|.+|++.+ +..+.
T Consensus 168 ~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 168 HEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred cccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 01123345789999999999999999999999999999999985 8999999999999999999999887 56788
Q ss_pred ---ccccccccccccCCCc------------CCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCc
Q 045707 140 ---GRLAVCNLACEGLSGV------------SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNES 204 (901)
Q Consensus 140 ---g~~i~v~~a~~~~~~~------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~ 204 (901)
|+.+.|.++..+.... .........+|||+||+.++|+++|+++|++||.|++++++.| .+|.+
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~ 325 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVS 325 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCc
Confidence 9999998775433220 0111234678999999999999999999999999999999999 57999
Q ss_pred eeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCC
Q 045707 205 RGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGK 245 (901)
Q Consensus 205 kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~ 245 (901)
+|||||+|.+.++|.+|+..+|+. ++|++|.|.+|..+..+
T Consensus 326 ~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 326 RGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999999999999999976 99999999999876543
No 7
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=99.97 E-value=7.5e-33 Score=309.07 Aligned_cols=327 Identities=19% Similarity=0.299 Sum_probs=237.8
Q ss_pred chhhhhcCCCCCCCCCCCCC--CcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhcccC-hhHHHHHHHHHHHcC
Q 045707 456 EPFFESLGLKPCEYSPFLPL--NLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFD-VGVFQSKLHAYEMLG 532 (901)
Q Consensus 456 ~~f~es~G~~~~~~~~~~~~--~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~-~~~l~~~l~~L~~lG 532 (901)
|.||+++|+..+.+...+.+ ..+..+.+..+.+.+++|++.|++.+++++++..+|.|+..+ +..+.+.+++|+++|
T Consensus 1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~ 80 (345)
T PF02536_consen 1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG 80 (345)
T ss_dssp -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence 56889999999988888552 233334788899999999999999999999999999999996 999999999999999
Q ss_pred CChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhccccc--CCHHHHHHHHHHHHhcCCChhHHhhHh
Q 045707 533 LSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQET--FNWSMMLRFLRLFRNLGCSDEQLGGLI 610 (901)
Q Consensus 533 ~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~--~~~~~~~~~l~fL~~~G~s~~~i~~li 610 (901)
++++++.+++.++|.+|..+.+.++.+.+.+|.++|++.+.+.+++..... ....++...+++|.++|++++++++++
T Consensus 81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi 160 (345)
T PF02536_consen 81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVI 160 (345)
T ss_dssp S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccc
Confidence 999999999999999999999889999999999999999977766554321 222777889999999999999999999
Q ss_pred hcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccccc
Q 045707 611 RQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVG 690 (901)
Q Consensus 611 ~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~ 690 (901)
.++|.+|..+.++.++++++||+++|++.+++.+++.++|++|..++++.+.+...++...|...+ .++.++|.+++
T Consensus 161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il~ 237 (345)
T PF02536_consen 161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQILS 237 (345)
T ss_dssp HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------T
T ss_pred cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---ccccccccccc
Confidence 999999999999999999999999999999999999999999999999888887777766666555 89999999998
Q ss_pred c--ccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHH
Q 045707 691 S--CTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHF 768 (901)
Q Consensus 691 ~--~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~ 768 (901)
. +.+...+.++..+|++.+++++++.++|++|...
T Consensus 238 ~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s------------------------------------------- 274 (345)
T PF02536_consen 238 LSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYS------------------------------------------- 274 (345)
T ss_dssp HHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS--------------------------------------------
T ss_pred cchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcc-------------------------------------------
Confidence 5 4677889999999999999999999999999862
Q ss_pred hcccHHHHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHH-HHHHH---HHHHHHhcCCCccccccCCcccccc
Q 045707 769 RGRGAELQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKD-VIKSK---IDFLVNYLGYPLSFLVSFPSYFNYT 838 (901)
Q Consensus 769 ~~~~~~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k---~~fL~~~mg~~~~~i~~~P~~L~ys 838 (901)
.+.|++|++||. ++|++.++|. ++|++|+||.| +|+|+ +++|.+ .|. ........+|++|
T Consensus 275 ---~e~l~~k~~fl~~~m~~~~~~i~----~~P~~l~~sLe~ri~PR~~~~~~l~~-~g~--~~~~sl~~~l~~s 339 (345)
T PF02536_consen 275 ---IEKLKPKFEFLVKEMGLPLEEIV----EFPQYLSYSLEKRIKPRYEVLKVLKS-KGL--IINPSLSSMLSCS 339 (345)
T ss_dssp ---HHHHHHHHHHHHHCCT--HHHHH----HSCHHHCS-HHHHHHHHHHHHHTT---TTT--GGGGGS-HHHHHH
T ss_pred ---hhhhhHHHHHHHHHhCcCHHHHh----hCCceeEechhhhhhhHHHHHHHHHH-CcC--CCCCCHHHHhhcc
Confidence 133789999999 8999998875 69999999999 89999 666655 463 3333444445444
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=263.38 Aligned_cols=219 Identities=21% Similarity=0.291 Sum_probs=182.0
Q ss_pred CCCCCCCCCChhhhcccCCCCCHHHHHHHHhhhcCCC-----------------------c-chhHHhhhc---------
Q 045707 19 QDFNSSSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQY-----------------------P-SIAEEIKSV--------- 65 (901)
Q Consensus 19 ~~~~~s~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~-----------------------~-~~~~~~~~~--------- 65 (901)
.+....+.++++|||.|+.++.|++|+.+|.++|.+. + ...+.++..
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3434446699999999999999999999999999981 1 111122221
Q ss_pred ---cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC-eeEEEEEecCC-CCCcceEEEEEecchhhHHHHhcCC--c-cc
Q 045707 66 ---ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGE-IEEGAVIYDKA-TGKSRGYGFITYKHMESTQSALRAP--S-KL 137 (901)
Q Consensus 66 ---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~~~~-~g~~kG~aFV~F~~~~~A~~Al~~~--~-~~ 137 (901)
..-+.++++|||||||.+.++++|.+.|++.++ |++|.+..++. ..++||||||+|.++..|..|-+.+ + ..
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 122456889999999999999999999999996 88888877664 3579999999999999999998876 3 34
Q ss_pred ccccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHH
Q 045707 138 IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217 (901)
Q Consensus 138 l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 217 (901)
+.|..+.|.||.+....... .....+.|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.++++
T Consensus 235 lwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~d 305 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERED 305 (506)
T ss_pred ecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHH
Confidence 89999999999876544333 4455788999999999999999999999999999988865 99999999999
Q ss_pred HHHHHHcCCCC-cCCcEEEEEeccCCCCCC
Q 045707 218 AKKAVDDPHKT-LGGRTIIVKLADTHKGKP 246 (901)
Q Consensus 218 A~~Al~~l~~~-i~g~~l~V~~a~~~~~~~ 246 (901)
|.+|++.+|+. ++|..|.|.+|++...+.
T Consensus 306 avkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 306 AVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999977 999999999999865443
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.1e-29 Score=273.46 Aligned_cols=172 Identities=26% Similarity=0.415 Sum_probs=155.4
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.++++|++|++.+ +..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34557899999999999999999999999999999999999999999999999999999999999876 67799999999
Q ss_pred ccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcC
Q 045707 146 NLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225 (901)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l 225 (901)
.++..... ....++|||+|||.++|+++|+++|++||.|..+++++|+.+|+++|||||+|.+.++|++|++.+
T Consensus 182 ~~a~p~~~------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 182 SYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eccccccc------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 98754321 224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cCC--cEEEEEeccCCCC
Q 045707 226 HKT-LGG--RTIIVKLADTHKG 244 (901)
Q Consensus 226 ~~~-i~g--~~l~V~~a~~~~~ 244 (901)
|+. +.| ++|.|++|.....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCCccCCCceeEEEEECCcccc
Confidence 976 555 7999999987543
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.3e-29 Score=280.82 Aligned_cols=218 Identities=22% Similarity=0.369 Sum_probs=178.0
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-----------------------hHHh-----------------hhc
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-----------------------AEEI-----------------KSV 65 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-----------------------~~~~-----------------~~~ 65 (901)
.+.+||++|+..+++++|.++|+++|++.. .+ ...+ ...
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 468999999999999999999999998721 00 0011 111
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc--cc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG--RL 142 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g--~~ 142 (901)
.......++|||+|||.++++++|+++|++||.|..++++.+..+|.++|||||+|.+.++|+.|++.+ |..+.| +.
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 222335678999999999999999999999999999999999888999999999999999999999887 455665 45
Q ss_pred cccccccccCCCc-----------------C-------------------------------------------------
Q 045707 143 AVCNLACEGLSGV-----------------S------------------------------------------------- 156 (901)
Q Consensus 143 i~v~~a~~~~~~~-----------------~------------------------------------------------- 156 (901)
+.+.++....... .
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 6666653211000 0
Q ss_pred -C-------------------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHH
Q 045707 157 -A-------------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVE 216 (901)
Q Consensus 157 -~-------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e 216 (901)
. .....+.+|||+|||+++++++|+++|++||.|.++++++|..||.++|||||+|.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH
Confidence 0 00112236999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC-cCCcEEEEEeccCCCC
Q 045707 217 AAKKAVDDPHKT-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 217 ~A~~Al~~l~~~-i~g~~l~V~~a~~~~~ 244 (901)
+|.+|++.||+. ++|+.|+|.|+.++..
T Consensus 323 ~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 323 EAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999987 9999999999987653
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=9.2e-28 Score=285.02 Aligned_cols=213 Identities=26% Similarity=0.445 Sum_probs=175.7
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCCc-chh-----------------------HHhhh--------------ccCCC
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SIA-----------------------EEIKS--------------VASAD 69 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~~-----------------------~~~~~--------------~~~~~ 69 (901)
+++|||+|+.+++|++|.++|+++|.+.. .++ ..+.. +..++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 36899999999999999999999997611 000 01100 11112
Q ss_pred -----CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 70 -----PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 70 -----~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
...++|||+|||.++|+++|+++|++||.|.+|++..+. +|+++|||||+|.+.++|++|++.+ +..+.|+.+
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 234679999999999999999999999999999999985 8999999999999999999999887 567999999
Q ss_pred ccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHH
Q 045707 144 VCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223 (901)
Q Consensus 144 ~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 223 (901)
.|.......... .......++|||+||+.++|+++|+++|+.||.|.++.+..+. +|+++|||||+|.+.++|.+|++
T Consensus 160 ~v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 160 YVGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EEeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHH
Confidence 987654433221 1233456789999999999999999999999999999999885 58999999999999999999999
Q ss_pred cCCCC-cC----CcEEEEEeccCCC
Q 045707 224 DPHKT-LG----GRTIIVKLADTHK 243 (901)
Q Consensus 224 ~l~~~-i~----g~~l~V~~a~~~~ 243 (901)
.+++. +. |+.+.|.++..+.
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred HhCCcEecccccceeeEeecccChh
Confidence 99976 88 9999998876543
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6.2e-29 Score=258.76 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=156.2
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-c-ccccc--cc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-S-KLIDG--RL 142 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~-~~l~g--~~ 142 (901)
..|.+.-++|||-||..++|.||+++|++||.|.+|.|++|+.||.++|||||.|.+.++|.+|+.++ + +++.| .+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34456678999999999999999999999999999999999999999999999999999999999997 3 45777 57
Q ss_pred cccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 143 AVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 143 i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
+.|+++..+.... ...++||||-|+..+||.+++++|++||.|++|.|++|.+ |.+||||||+|++.+.|..|+
T Consensus 109 vqvk~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 109 VQVKYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred eeecccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHH
Confidence 7788776543322 3478899999999999999999999999999999999976 999999999999999999999
Q ss_pred HcCCCC--cCC--cEEEEEeccCCCCCCCC
Q 045707 223 DDPHKT--LGG--RTIIVKLADTHKGKPPQ 248 (901)
Q Consensus 223 ~~l~~~--i~g--~~l~V~~a~~~~~~~~~ 248 (901)
+.||+. +.| .+|.|+||++++.+...
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHH
Confidence 999964 666 78999999998877653
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.2e-26 Score=257.91 Aligned_cols=168 Identities=27% Similarity=0.435 Sum_probs=152.2
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
+.++|||+|||.++|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999999999999999999999999999999876 677999999999886
Q ss_pred ccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 150 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
.... ....++|||+|||.++++++|+++|++||.|..+++..+..+|.++|||||+|.+.++|++|++.+|+.
T Consensus 82 ~~~~------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~ 155 (352)
T TIGR01661 82 PSSD------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT 155 (352)
T ss_pred cccc------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc
Confidence 4322 224678999999999999999999999999999999999888999999999999999999999999976
Q ss_pred cCC--cEEEEEeccCCCC
Q 045707 229 LGG--RTIIVKLADTHKG 244 (901)
Q Consensus 229 i~g--~~l~V~~a~~~~~ 244 (901)
+.| .+|.|.++..+..
T Consensus 156 ~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 156 PSGCTEPITVKFANNPSS 173 (352)
T ss_pred cCCCceeEEEEECCCCCc
Confidence 655 6899999876653
No 14
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]
Probab=99.94 E-value=2.5e-27 Score=268.67 Aligned_cols=331 Identities=21% Similarity=0.309 Sum_probs=240.0
Q ss_pred cCchhHHHHHHHhhhcCCCCCCchhhhhcCCCCCCCCCCCCC--CcccccchhhHhHhHHHHhhcCccCchhhhHHhhch
Q 045707 434 ENQLDVQRLIARFLRYHPINEFEPFFESLGLKPCEYSPFLPL--NLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAR 511 (901)
Q Consensus 434 ~~~~~~~~~~~r~l~~~~i~~~~~f~es~G~~~~~~~~~~~~--~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~ 511 (901)
.......+.+.-+..++|.+.++ +|+|+|++.++++.+..+ ..++++++..+.+..+.|...|++++.++.+++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~p~s~~~-~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~ 152 (413)
T KOG1267|consen 74 KLARKLSREVSSEDSVNPSSVLS-SLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVP 152 (413)
T ss_pred hhHHHHHHHHHhhhccCcHHHHH-HHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccH
Confidence 35666667777888888999998 999999999999988774 455555566666666667777777777777776666
Q ss_pred hhccc-ChhHHHHHHHHHHHcC--CChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccccCCHHH
Q 045707 512 EVFQF-DVGVFQSKLHAYEMLG--LSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSM 588 (901)
Q Consensus 512 ~i~~~-~~~~l~~~l~~L~~lG--~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~ 588 (901)
.+|.. ....+...+++|.+.+ +....+.+++..+|.. ...|..
T Consensus 153 ~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~----------------------------------~~~~~~ 198 (413)
T KOG1267|consen 153 KILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSF----------------------------------LLNENS 198 (413)
T ss_pred HHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccc----------------------------------cccccc
Confidence 66655 4456666666666653 5555555544443321 122223
Q ss_pred HHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHH
Q 045707 589 MLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFL 668 (901)
Q Consensus 589 ~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL 668 (901)
+. .+++++++|....++...+..+|.++.... .+...+.++..+|+.+.. +++...|.+++++.++.|++++++|
T Consensus 199 v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l 273 (413)
T KOG1267|consen 199 VE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVL 273 (413)
T ss_pred cc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHH
Confidence 33 466777777777777777777777766544 566677777777766555 7777777777777777777777777
Q ss_pred HHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHh
Q 045707 669 FEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKF 748 (901)
Q Consensus 669 ~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~ 748 (901)
+++|++.++|.+++.++|.+|+.+..+....+...+...+. +.++|+++..
T Consensus 274 ~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~~~~-----~~k~p~~l~~------------------------ 324 (413)
T KOG1267|consen 274 KSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKNPKH-----ILKFPQLLRS------------------------ 324 (413)
T ss_pred HHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhcchh-----hhhhhhhhhc------------------------
Confidence 77777777777777777777775444333222222222111 5566666632
Q ss_pred hhccCcccChHHHHHHHHHHhcccHHHHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHH-HHHHHHHHHHHhcCCCccc
Q 045707 749 LLDVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKD-VIKSKIDFLVNYLGYPLSF 827 (901)
Q Consensus 749 L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e-~l~~k~~fL~~~mg~~~~~ 827 (901)
....++++++||..+|++..++..|++++|+++.+|.+ .++.+.+|+++.|+++.+.
T Consensus 325 ----------------------s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~ 382 (413)
T KOG1267|consen 325 ----------------------SEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSA 382 (413)
T ss_pred ----------------------cchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHH
Confidence 23448899999999999999999999999999999999 9999999999999999999
Q ss_pred cccCCcccccccc-hhHHHHHHHHHHHHc
Q 045707 828 LVSFPSYFNYTEE-RIKLRFLMYNWLKDE 855 (901)
Q Consensus 828 i~~~P~~L~ysle-ri~pR~~~~~~L~~~ 855 (901)
++.+|++|+|++| |++||+.++.++..+
T Consensus 383 ~~~~p~~~~y~le~ri~pr~~~~~~~~~~ 411 (413)
T KOG1267|consen 383 LVSFPAFFGYSLEKRIRPRFNVIKKLGVK 411 (413)
T ss_pred HhccchhhccchhhcchhHHHHHHHHhcc
Confidence 9999999999999 999999998888765
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.1e-25 Score=261.09 Aligned_cols=177 Identities=27% Similarity=0.413 Sum_probs=157.3
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
...+...++|||+|||.++|+++|+++|++||.|.+|+++.|+.+|+++|||||+|.+.++|.+|+..++..+.|+.|.|
T Consensus 83 ~~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v 162 (457)
T TIGR01622 83 TEAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIV 162 (457)
T ss_pred CccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEE
Confidence 34455688999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccccCCCcC------CCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHH
Q 045707 146 NLACEGLSGVS------AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219 (901)
Q Consensus 146 ~~a~~~~~~~~------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 219 (901)
..+........ .......++|||+|||.++|+++|+++|++||.|..|.+..+..+|+++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 87653222111 111223689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC-cCCcEEEEEeccCC
Q 045707 220 KAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 220 ~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
+|++.+|+. +.|++|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999976 99999999998843
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.5e-26 Score=221.07 Aligned_cols=216 Identities=23% Similarity=0.354 Sum_probs=183.8
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCC-----------------------------------------CcchhHHhhhc
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQ-----------------------------------------YPSIAEEIKSV 65 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 65 (901)
-+.+-|.=|+..+++|+++.+|..+|.+ .+.+.++..+.
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4578888899999999999999999987 23444466667
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccc--cc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDG--RL 142 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g--~~ 142 (901)
+++.-.+.+|||.+||..+|..+|+++|++||.|..-+|..|..||.+||.|||.|+..++|+.||+.+| +.-.| .+
T Consensus 121 Ss~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tep 200 (360)
T KOG0145|consen 121 SSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEP 200 (360)
T ss_pred ChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCC
Confidence 7778889999999999999999999999999999989999999999999999999999999999999874 43333 57
Q ss_pred cccccccccCCCcC---------------------------------------------------------CCCccccce
Q 045707 143 AVCNLACEGLSGVS---------------------------------------------------------AVPDLAQRK 165 (901)
Q Consensus 143 i~v~~a~~~~~~~~---------------------------------------------------------~~~~~~~~~ 165 (901)
|.|+++........ ........+
T Consensus 201 ItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~c 280 (360)
T KOG0145|consen 201 ITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWC 280 (360)
T ss_pred eEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeE
Confidence 77777642111000 001124579
Q ss_pred EEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 166 lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
|||-||.++++|.-|.++|++||.|..+++++|..|++++|||||.+.+.++|..|+..+|++ +++|.+.|.|...+
T Consensus 281 iFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 281 IFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999987 99999999997654
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.2e-24 Score=248.56 Aligned_cols=212 Identities=22% Similarity=0.301 Sum_probs=167.6
Q ss_pred CCCCChhhhcccCCCCCHHHHHHHHhhhcCCCcc-h----------------------hHHhhhc------------cCC
Q 045707 24 SSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPS-I----------------------AEEIKSV------------ASA 68 (901)
Q Consensus 24 s~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~-~----------------------~~~~~~~------------~~~ 68 (901)
+...+++||++|+.+++|++|.++|+++|.+... + ...+... ...
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 3456899999999999999999999999976210 0 0111111 112
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCC-eeEEEEEe-cCCCCCcceEEEEEecchhhHHHHhcCC-c--cccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGE-IEEGAVIY-DKATGKSRGYGFITYKHMESTQSALRAP-S--KLIDGRLA 143 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~-~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~--~~l~g~~i 143 (901)
....++|||+|||.++|+++|.+.|++++. +.++.+.. +..+++++|||||+|.++++|.+|++.+ + ..+.|+.|
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 234689999999999999999999999974 44444432 2345678999999999999999999875 2 34889999
Q ss_pred ccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccC--CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHH
Q 045707 144 VCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRH--GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKA 221 (901)
Q Consensus 144 ~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 221 (901)
.|.|+....... .......++|||+||+.++|+++|+++|++| |.|++|.+++ +||||+|.+.++|.+|
T Consensus 215 ~VdwA~p~~~~d-~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 215 AVDWAEPEEEVD-EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEeeccccccc-ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 999987543221 1122345789999999999999999999999 9999987653 5999999999999999
Q ss_pred HHcCCCC-cCCcEEEEEeccCCCC
Q 045707 222 VDDPHKT-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 222 l~~l~~~-i~g~~l~V~~a~~~~~ 244 (901)
++.+|+. |+|+.|+|.||++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 9999976 9999999999987543
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=1.9e-25 Score=208.00 Aligned_cols=175 Identities=26% Similarity=0.394 Sum_probs=156.6
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-ccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-LIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-~l~g~~i~v~~a~ 149 (901)
.+.|||||||+..++++.|.++|-+.|+|+++.+.+|+.+...+|||||+|.++++|+.|++-++. .+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 468999999999999999999999999999999999999999999999999999999999999874 4999999999886
Q ss_pred ccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeE-eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE-GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 150 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
.... ....+.++||+||.+++++..|.++|+.||.+.. -+++++.+||.++|||||.|.+.+.+.+|+..+|+.
T Consensus 88 ~~~~-----nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 88 AHQK-----NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred cccc-----cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 2221 2233589999999999999999999999999865 478999999999999999999999999999999976
Q ss_pred -cCCcEEEEEeccCCCCCCCCCC
Q 045707 229 -LGGRTIIVKLADTHKGKPPQTQ 250 (901)
Q Consensus 229 -i~g~~l~V~~a~~~~~~~~~~~ 250 (901)
++.+++.|.++..+..++.+..
T Consensus 163 ~l~nr~itv~ya~k~~~kg~~~g 185 (203)
T KOG0131|consen 163 YLCNRPITVSYAFKKDTKGERHG 185 (203)
T ss_pred hhcCCceEEEEEEecCCCcccCC
Confidence 8899999999998877664433
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.5e-25 Score=213.31 Aligned_cols=172 Identities=27% Similarity=0.411 Sum_probs=156.3
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~ 146 (901)
.+...++|.|.-||.++|+++++.+|+..|+|++|++++|+.+|.+-|||||.|.++++|++|+..+| -.+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999985 55999999999
Q ss_pred cccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
++.+... .....+|||++||...|..+|.++|++||.|..-+|+.|..||.+||.|||+|+.+++|+.||+.+|
T Consensus 117 yARPSs~------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 117 YARPSSD------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred eccCChh------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 9865433 3457789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-c--CCcEEEEEeccCCCCC
Q 045707 227 KT-L--GGRTIIVKLADTHKGK 245 (901)
Q Consensus 227 ~~-i--~g~~l~V~~a~~~~~~ 245 (901)
+. - +..+|.|+||..+..+
T Consensus 191 G~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccc
Confidence 76 3 3478999999876443
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.3e-23 Score=222.94 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=175.8
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCCcchhH------------------------Hh---------------------
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAE------------------------EI--------------------- 62 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~~~~------------------------~~--------------------- 62 (901)
.++||++++.+.+.++|.+.|+.+|++.+.+.+ .+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999998211110 00
Q ss_pred ---------------hhccC-----C--CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEE
Q 045707 63 ---------------KSVAS-----A--DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFIT 120 (901)
Q Consensus 63 ---------------~~~~~-----~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~ 120 (901)
+...+ . +...-+|.|+|||+.+.+.+|+.+|+.||.|.+|.|++.+ .|+-.|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 00111 1 1125689999999999999999999999999999999876 55555999999
Q ss_pred ecchhhHHHHhcCC-cccccccccccccccccCCCcC-------------------------------------------
Q 045707 121 YKHMESTQSALRAP-SKLIDGRLAVCNLACEGLSGVS------------------------------------------- 156 (901)
Q Consensus 121 F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~~------------------------------------------- 156 (901)
|.+..+|.+|++.+ +..|+||+|-|.||..+..-..
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 99999999999998 5779999999999842110000
Q ss_pred -C---------------------C-------------------CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeee
Q 045707 157 -A---------------------V-------------------PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSV 195 (901)
Q Consensus 157 -~---------------------~-------------------~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i 195 (901)
. . ......+|||+|||+++|+++|.+.|++||+|.++.+
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~i 324 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAII 324 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEE
Confidence 0 0 0001268999999999999999999999999999999
Q ss_pred eccCCCCCceeEEEEEeCCHHHHHHHHHcCC-----C-C-cCCcEEEEEeccCCCC
Q 045707 196 AYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-----K-T-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 196 ~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-----~-~-i~g~~l~V~~a~~~~~ 244 (901)
+.++.||+++|.|||.|.+..+|+.||.... + . ++||.|.|..|-.++.
T Consensus 325 V~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 325 VKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred EeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 9999999999999999999999999999872 3 3 8999999999987654
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=2.2e-22 Score=232.90 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=136.4
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC---Ccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA---PSKLIDGRLAVCNLA 148 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~---~~~~l~g~~i~v~~a 148 (901)
+++|||+|||+++|+++|+++|++||+|.+|+++.+ +|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 589999999999999999999999999999999853 48999999999999999985 356799999999998
Q ss_pred cccCCCcCC------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 149 CEGLSGVSA------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 149 ~~~~~~~~~------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
......... .......+|||+||++++|+++|+++|++||.|.+|.+.++.. +|+|||+|.+.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAK 151 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHH
Confidence 643211111 1111234799999999999999999999999999999987643 379999999999999999
Q ss_pred HcCCCC-cCC--cEEEEEeccCCC
Q 045707 223 DDPHKT-LGG--RTIIVKLADTHK 243 (901)
Q Consensus 223 ~~l~~~-i~g--~~l~V~~a~~~~ 243 (901)
+.||+. +.| +.|+|.|++...
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCC
Confidence 999976 643 689999998654
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.3e-23 Score=217.46 Aligned_cols=193 Identities=25% Similarity=0.360 Sum_probs=158.4
Q ss_pred CHHHHHHHHhhhcCCCc--chhHHhh-----hccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCC
Q 045707 40 SKSQLVDLLSRLGSQYP--SIAEEIK-----SVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGK 112 (901)
Q Consensus 40 ~ee~l~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~ 112 (901)
+|+.|.+++.+.+-.-. .-.++.. -.....+.++.||||.||.++.|++|..+|++.|+|-++++|+|+.+|.
T Consensus 44 ~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~ 123 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD 123 (506)
T ss_pred HHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC
Confidence 57778888888764311 1111111 1223336688999999999999999999999999999999999999999
Q ss_pred cceEEEEEecchhhHHHHhcCC-cccc-cccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCc-
Q 045707 113 SRGYGFITYKHMESTQSALRAP-SKLI-DGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE- 189 (901)
Q Consensus 113 ~kG~aFV~F~~~~~A~~Al~~~-~~~l-~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~- 189 (901)
+||||||+|.+.++|+.|++.+ |.+| .|+.|.|..+. .+++|||||+|.+.++++|.+.+++.++
T Consensus 124 nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv------------an~RLFiG~IPK~k~keeIlee~~kVteG 191 (506)
T KOG0117|consen 124 NRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV------------ANCRLFIGNIPKTKKKEEILEEMKKVTEG 191 (506)
T ss_pred CcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee------------ecceeEeccCCccccHHHHHHHHHhhCCC
Confidence 9999999999999999999997 4544 68888888653 3789999999999999999999998875
Q ss_pred eeEeeeeccC-CCCCceeEEEEEeCCHHHHHHHHHcCC-CC--cCCcEEEEEeccCCCC
Q 045707 190 IEEGSVAYDK-DTNESRGFGFVTYKTVEAAKKAVDDPH-KT--LGGRTIIVKLADTHKG 244 (901)
Q Consensus 190 I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Al~~l~-~~--i~g~~l~V~~a~~~~~ 244 (901)
|.+|.+..++ +..++||||||+|.|+..|..|...|- +. +.|..+.|.||.+...
T Consensus 192 VvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 192 VVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred eeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 5666666544 357999999999999999999988875 44 8999999999998654
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.7e-23 Score=212.93 Aligned_cols=172 Identities=22% Similarity=0.399 Sum_probs=153.3
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~ 150 (901)
-++||||.|.+...|+.|+..|..||+|.++.+..|+.|+++||||||+|+-+|.|+.|++.+ +..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 578999999999999999999999999999999999999999999999999999999999998 5679999999986543
Q ss_pred cCCCcCC-----CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcC
Q 045707 151 GLSGVSA-----VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225 (901)
Q Consensus 151 ~~~~~~~-----~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l 225 (901)
-....+. .....-++|||..+.++.++++|+..|+.||+|.+|.+.+++.++..+||||++|.+..+...|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 3222111 11234579999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCC-cCCcEEEEEeccCCC
Q 045707 226 HKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 226 ~~~-i~g~~l~V~~a~~~~ 243 (901)
|-. ++|..++|..+-++.
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 965 999999998876544
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.1e-22 Score=239.53 Aligned_cols=170 Identities=19% Similarity=0.291 Sum_probs=142.9
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~ 150 (901)
.++|||+|||.++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++.+ |..+.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 578999999999999999999999999999999999999999999999999999999999876 6779999999988753
Q ss_pred cCCCcCC----------------------CCccccceEEEcCCCCC----------CcHHHHHhhhccCCceeEeeeecc
Q 045707 151 GLSGVSA----------------------VPDLAQRKLYIGGLSPE----------VTTEVLLNFFGRHGEIEEGSVAYD 198 (901)
Q Consensus 151 ~~~~~~~----------------------~~~~~~~~lfV~nLp~~----------~tee~L~~~F~~fG~I~~v~i~~d 198 (901)
....... .......+|+|.|+... ...++|++.|++||.|..|.|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~ 454 (509)
T TIGR01642 375 GANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRP 454 (509)
T ss_pred CCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeecc
Confidence 2211100 01124577899999532 123679999999999999999875
Q ss_pred C---CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 199 K---DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 199 ~---~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
. .++.+.|+|||+|.+.++|++|+..|||. ++|+.|.|.|...
T Consensus 455 ~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 455 NGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 3 34567899999999999999999999976 9999999999764
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.3e-23 Score=214.19 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=177.6
Q ss_pred CCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-c-------------------------------------------hhH
Q 045707 25 SSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-S-------------------------------------------IAE 60 (901)
Q Consensus 25 ~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~-------------------------------------------~~~ 60 (901)
.+...+|||.+++.|+|++++++|++.|.++. . +..
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34569999999999999999999999998821 0 000
Q ss_pred Hhhh-ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc--c
Q 045707 61 EIKS-VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK--L 137 (901)
Q Consensus 61 ~~~~-~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~--~ 137 (901)
+... ..++-.+.++||||-|+..+||.+++++|++||.|++|.|++|. .|.+||||||+|.+.+.|..||+.+++ .
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcccee
Confidence 1100 11222347899999999999999999999999999999999996 899999999999999999999999853 3
Q ss_pred ccc--cccccccccccCCC-------------------------------------------------------------
Q 045707 138 IDG--RLAVCNLACEGLSG------------------------------------------------------------- 154 (901)
Q Consensus 138 l~g--~~i~v~~a~~~~~~------------------------------------------------------------- 154 (901)
+.| .++.|+|+.....+
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 666 57777776210000
Q ss_pred ----------------------------------------c---------C-----------------------------
Q 045707 155 ----------------------------------------V---------S----------------------------- 156 (901)
Q Consensus 155 ----------------------------------------~---------~----------------------------- 156 (901)
. .
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 0 0
Q ss_pred -------------------------------------------------------------------CCCccccceEEEc
Q 045707 157 -------------------------------------------------------------------AVPDLAQRKLYIG 169 (901)
Q Consensus 157 -------------------------------------------------------------------~~~~~~~~~lfV~ 169 (901)
....+.+.++||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 0001123569999
Q ss_pred CCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 170 GLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 170 nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
+||.+.-+.+|-..|..||.|.+.++..|+.||-++.|+||.|++..+|..||..||+. +++++++|....++.
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999987 999999999877654
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=3.3e-22 Score=231.35 Aligned_cols=207 Identities=17% Similarity=0.169 Sum_probs=159.7
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCCcc------------------hhHHhhh----------------cc-----CC
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQYPS------------------IAEEIKS----------------VA-----SA 68 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~------------------~~~~~~~----------------~~-----~~ 68 (901)
-.+||++|+.++++++|.++|+++|.+... ....++. .+ .+
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~ 82 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKR 82 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccccc
Confidence 478999999999999999999999988110 0001100 00 00
Q ss_pred C----------CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccc
Q 045707 69 D----------PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKL 137 (901)
Q Consensus 69 ~----------~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~ 137 (901)
. ....+|||+||++++|+++|+++|++||.|.+|.|+++. .+|+|||+|.+.++|.+|++.+ |..
T Consensus 83 ~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 83 DGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred CCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCc
Confidence 0 112379999999999999999999999999999998764 2479999999999999999876 566
Q ss_pred ccc--cccccccccccC--------C----------C-------------cC----------------------------
Q 045707 138 IDG--RLAVCNLACEGL--------S----------G-------------VS---------------------------- 156 (901)
Q Consensus 138 l~g--~~i~v~~a~~~~--------~----------~-------------~~---------------------------- 156 (901)
+.| +.++|.++.... . + ..
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 754 356665543100 0 0 00
Q ss_pred ------------------------------CCCccccceEEEcCCCC-CCcHHHHHhhhccCCceeEeeeeccCCCCCce
Q 045707 157 ------------------------------AVPDLAQRKLYIGGLSP-EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESR 205 (901)
Q Consensus 157 ------------------------------~~~~~~~~~lfV~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~k 205 (901)
......+++|||+||++ .+|+++|+++|+.||.|.+|+++.++ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~ 313 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----K 313 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----C
Confidence 00012456999999998 69999999999999999999998863 5
Q ss_pred eEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 206 GFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 206 G~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
|||||+|.+.++|..|++.||+. +.|++|.|.+++...
T Consensus 314 g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 314 ETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 89999999999999999999976 999999999986543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=2.5e-22 Score=229.71 Aligned_cols=192 Identities=25% Similarity=0.364 Sum_probs=149.9
Q ss_pred CCHHHHHHHHhhhcCCCc--chhHHhhh----c-cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Q 045707 39 LSKSQLVDLLSRLGSQYP--SIAEEIKS----V-ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111 (901)
Q Consensus 39 ~~ee~l~~~~~~~~~~~~--~~~~~~~~----~-~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g 111 (901)
.+++.+..++..-|-.-. ........ + .......++|||+|||.++||++|+++|++||.|.+|+|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 356667777766554321 11111111 1 112335789999999999999999999999999999999999 699
Q ss_pred CcceEEEEEecchhhHHHHhcCCc-ccc-cccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCc
Q 045707 112 KSRGYGFITYKHMESTQSALRAPS-KLI-DGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189 (901)
Q Consensus 112 ~~kG~aFV~F~~~~~A~~Al~~~~-~~l-~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~ 189 (901)
++||||||+|.+.++|++|++.++ ..+ .|+.+.|..+. ..++|||+|||.++++++|.+.|++++.
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~e 164 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTE 164 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccC
Confidence 999999999999999999999874 455 47777776542 2578999999999999999999999864
Q ss_pred -eeEeee-eccCCCCCceeEEEEEeCCHHHHHHHHHcCC-C--CcCCcEEEEEeccCCC
Q 045707 190 -IEEGSV-AYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-K--TLGGRTIIVKLADTHK 243 (901)
Q Consensus 190 -I~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~--~i~g~~l~V~~a~~~~ 243 (901)
+.++.+ ..+.++++++|||||+|.++++|..|++.++ + .+.|+.|.|.|+.+..
T Consensus 165 gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 165 GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 444333 3334557889999999999999999999876 3 2789999999998654
No 28
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=206.90 Aligned_cols=178 Identities=31% Similarity=0.571 Sum_probs=165.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
+.+++|||+|++++|++.|++.|++||+|.+|.+++|+.+++++||+||+|++.+....++....+.++|+.|.+..+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcC
Q 045707 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLG 230 (901)
Q Consensus 151 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~ 230 (901)
..............++||+++|.++++++++++|++||.|..+.++.|..+++.+||+||.|.+++++.+++..--+.++
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 76665555555678999999999999999999999999999999999999999999999999999999999888878899
Q ss_pred CcEEEEEeccCCCCCCCC
Q 045707 231 GRTIIVKLADTHKGKPPQ 248 (901)
Q Consensus 231 g~~l~V~~a~~~~~~~~~ 248 (901)
|+.+.|+.|.++......
T Consensus 165 gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQST 182 (311)
T ss_pred CceeeEeeccchhhcccc
Confidence 999999999988766544
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.7e-22 Score=214.83 Aligned_cols=172 Identities=28% Similarity=0.413 Sum_probs=151.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
++.||||++||++++.++|.++|+.+|+|..|.++.++.++.+||||||+|.-.++++.|++.. +..+.|+.|.|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 4489999999999999999999999999999999999999999999999999999999999987 567999999999886
Q ss_pred ccCCCcCC--------------------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEE
Q 045707 150 EGLSGVSA--------------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGF 209 (901)
Q Consensus 150 ~~~~~~~~--------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aF 209 (901)
.+...... ..+....+|.|+|||+.+.+.+|+.+|+.||.|..+.|++..+++ -.||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC-ccceEE
Confidence 43322200 002236789999999999999999999999999999999888754 449999
Q ss_pred EEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 210 VTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 210 V~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
|+|.+..+|.+|++.+|+. |+||+|.|.||-++.
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 9999999999999999976 999999999998764
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.1e-21 Score=231.03 Aligned_cols=171 Identities=17% Similarity=0.256 Sum_probs=141.6
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcC------------CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHG------------EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G------------~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~ 133 (901)
.+.+...++|||||||+++|+++|+++|.+++ .|..+. .++.+|||||+|.+.++|..|+..
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhcC
Confidence 34556789999999999999999999999862 233333 345679999999999999999987
Q ss_pred CcccccccccccccccccCCCc-----------------------CCCCccccceEEEcCCCCCCcHHHHHhhhccCCce
Q 045707 134 PSKLIDGRLAVCNLACEGLSGV-----------------------SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI 190 (901)
Q Consensus 134 ~~~~l~g~~i~v~~a~~~~~~~-----------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I 190 (901)
++..+.|+.|.|.......... ........++|||+|||.++|+++|+++|+.||.|
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 7888999999987543221000 00012235789999999999999999999999999
Q ss_pred eEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 191 EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 191 ~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
..+.++.+..+|.++|||||+|.+.++|..|++.+|+. ++|+.|.|.+|...
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999999999999999999999999999999977 99999999998643
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=2.2e-21 Score=225.25 Aligned_cols=212 Identities=21% Similarity=0.281 Sum_probs=167.3
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-chhH-----------------------H---------------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SIAE-----------------------E--------------------- 61 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~~~-----------------------~--------------------- 61 (901)
...+||++|+..+++++|.+.|+.+|.+.. .+.. .
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 457999999999999999999999997621 0000 0
Q ss_pred -------hhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 62 -------IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 62 -------~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
........+..++|||+|||.++|+++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++.+
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 0000111233589999999999999999999999999999999999989999999999999999999999876
Q ss_pred -cccccccccccccccccCCC-----------------------------------c-----------------------
Q 045707 135 -SKLIDGRLAVCNLACEGLSG-----------------------------------V----------------------- 155 (901)
Q Consensus 135 -~~~l~g~~i~v~~a~~~~~~-----------------------------------~----------------------- 155 (901)
|..+.|+.|.|.++...... .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 67799999999985311000 0
Q ss_pred -------C-------------------CCCccccceEEEcCCCCCCc----------HHHHHhhhccCCceeEeeeeccC
Q 045707 156 -------S-------------------AVPDLAQRKLYIGGLSPEVT----------TEVLLNFFGRHGEIEEGSVAYDK 199 (901)
Q Consensus 156 -------~-------------------~~~~~~~~~lfV~nLp~~~t----------ee~L~~~F~~fG~I~~v~i~~d~ 199 (901)
. .......++|+|.|+....+ .++|++.|++||.|..+.+..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~-- 406 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT-- 406 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC--
Confidence 0 00113456789999954443 368999999999999998863
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 200 DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 200 ~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
....|++||+|.+.++|.+|++.|||. ++|+.|.+.+....
T Consensus 407 --~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 407 --KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred --CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 345699999999999999999999976 99999999998653
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=2.7e-21 Score=192.58 Aligned_cols=153 Identities=24% Similarity=0.403 Sum_probs=138.2
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
-++||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|+.||+.+ +-.|+|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999999976 8999999999999999976 56799999999987665
Q ss_pred CCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC
Q 045707 152 LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG 230 (901)
Q Consensus 152 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~ 230 (901)
.....+++|+|+.+.++.+++++.|++||.|.+|.|.+| |+||.|+..++|..|++.++++ +.
T Consensus 75 --------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 75 --------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred --------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccc
Confidence 234788999999999999999999999999999999875 9999999999999999999976 99
Q ss_pred CcEEEEEeccCCCCCCCCC
Q 045707 231 GRTIIVKLADTHKGKPPQT 249 (901)
Q Consensus 231 g~~l~V~~a~~~~~~~~~~ 249 (901)
|+++.|..+.++-...+.+
T Consensus 139 gk~m~vq~stsrlrtapgm 157 (346)
T KOG0109|consen 139 GKRMHVQLSTSRLRTAPGM 157 (346)
T ss_pred cceeeeeeeccccccCCCC
Confidence 9999999998765444433
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.9e-20 Score=182.62 Aligned_cols=141 Identities=28% Similarity=0.439 Sum_probs=121.2
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
+..-||||||||+.++||+-|..+|++.|.|..|+|+.| .+.|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 445689999999999999999999999999999999987 3556666
Q ss_pred cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 149 CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 149 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
..... .........--+||+.|..+++.++|++.|.+||+|.+++|++|..|+++||||||.|-+.++|+.||..||+.
T Consensus 49 ~~p~n-Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 49 TAPGN-QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred cCccc-CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 54411 11112222456999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -cCCcEEEEEeccCCCC
Q 045707 229 -LGGRTIIVKLADTHKG 244 (901)
Q Consensus 229 -i~g~~l~V~~a~~~~~ 244 (901)
+++|.|+-.||..+..
T Consensus 128 WlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPS 144 (321)
T ss_pred eeccceeeccccccCcc
Confidence 9999999999987653
No 34
>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=213.08 Aligned_cols=270 Identities=21% Similarity=0.284 Sum_probs=233.3
Q ss_pred cCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHH
Q 045707 567 MEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIF 646 (901)
Q Consensus 567 lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l 646 (901)
+|+..++..........+...++..++++|+++|+++.+|.+++..+|.+|..+.++.+.+++.+|...|++...+++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~ 148 (413)
T KOG1267|consen 69 LGLSIKLARKLSREVSSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIV 148 (413)
T ss_pred cccchhhHHHHHHHHHhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhh
Confidence 44444444444333334555666789999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcceehhccccchHHHHHHHHhh--hchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHH
Q 045707 647 LQFPQIEVRKFLLNLNQCLLFLFEIK--MKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKK 724 (901)
Q Consensus 647 ~~~P~ll~~s~e~~l~p~~~fL~~~g--~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~ 724 (901)
...|.+|+.+...++.+.++||++++ .....+.+++...|........-..+.+++.+|+....+..++..+|..+..
T Consensus 149 s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~ 228 (413)
T KOG1267|consen 149 SVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLL 228 (413)
T ss_pred hccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceee
Confidence 99999999999999999999999985 6777777777777755554333338999999999999999999999998765
Q ss_pred hhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHHhcccHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCcc
Q 045707 725 LALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAE-LQERFDCLVNAGLDRKDVCEMIRVSPQIL 803 (901)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~~~~~~~-l~~r~~~L~~~G~s~~~v~~mi~~~P~iL 803 (901)
+ . .+..++.++..+||++.+.++++++..+.+.+++ +++++++|.+.||+.+||..|++++|++|
T Consensus 229 ~-------------~-~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l 294 (413)
T KOG1267|consen 229 Y-------------L-KLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQIL 294 (413)
T ss_pred e-------------h-hhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchhe
Confidence 2 1 6778888999999999999999999999998887 99999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhcCCCccccccCCcccccccchhHHHHHHHHHHHHcCC
Q 045707 804 NMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGW 857 (901)
Q Consensus 804 ~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~~~~~~L~~~g~ 857 (901)
++|.+++..+++||++. .+++.++|++++++...+.+|+.+ |...|+
T Consensus 295 ~~s~~~~~~~~~~~~~~----~~~~~k~p~~l~~s~~~l~~~ie~---l~~~g~ 341 (413)
T KOG1267|consen 295 GYSVKKNLKTTEYLLKN----PKHILKFPQLLRSSEDKLKPRIEF---LLSLGF 341 (413)
T ss_pred EeehhhhhHHHHHHHhc----chhhhhhhhhhhccchhhhhhHHH---HHHcCC
Confidence 99999999999999997 444999999998888899999999 666664
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.3e-20 Score=202.63 Aligned_cols=207 Identities=24% Similarity=0.400 Sum_probs=172.5
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCCc-chhHH--------------------hhh--------------ccCCCCCC
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SIAEE--------------------IKS--------------VASADPVH 72 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~~~~--------------------~~~--------------~~~~~~~~ 72 (901)
..+||| ++++++.|.+.|+..|++.. .+++. +.. +++++++.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 368899 89999999999999998722 22211 110 44444444
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
|||.||++++|.++|.++|+.||+|.+|++.++. +| ++|| ||+|+++++|++|++.+ |..+.|+.|.|.....+
T Consensus 79 --~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 --VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred --eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999999996 66 9999 99999999999999987 56799999999887654
Q ss_pred CCCcCCC--CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 152 LSGVSAV--PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 152 ~~~~~~~--~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
....... ....-.+++|.|.+.+++++.|.++|..+|.|.++.++.+.. |+++|||||.|.+.++|..|++.+++.
T Consensus 154 ~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 154 EEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCc
Confidence 3322211 233457899999999999999999999999999999999865 779999999999999999999999977
Q ss_pred cCCcEEEEEeccCCC
Q 045707 229 LGGRTIIVKLADTHK 243 (901)
Q Consensus 229 i~g~~l~V~~a~~~~ 243 (901)
+.|..+.|..+..+.
T Consensus 233 ~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKS 247 (369)
T ss_pred CCccceeecccccch
Confidence 778999998887743
No 36
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=8.1e-20 Score=200.47 Aligned_cols=156 Identities=25% Similarity=0.415 Sum_probs=142.8
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~a~~~ 151 (901)
..|||| +++||.+|.++|+.+|+|+++++.+|. | +-|||||.|.++++|++|++.+| ..+.|+++++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999997 6 99999999999999999999997 4599999999998654
Q ss_pred CCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC
Q 045707 152 LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG 230 (901)
Q Consensus 152 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~ 230 (901)
.. .+||.||++++|...|.++|+.||.|.+|++..+.+ | ++|| ||+|+++++|.+|++.+|+. +.
T Consensus 76 ~~-----------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 76 PS-----------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred Cc-----------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 32 299999999999999999999999999999999975 5 9999 99999999999999999987 89
Q ss_pred CcEEEEEeccCCCCCCCC
Q 045707 231 GRTIIVKLADTHKGKPPQ 248 (901)
Q Consensus 231 g~~l~V~~a~~~~~~~~~ 248 (901)
|+.|.|.....+..+...
T Consensus 142 ~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 142 GKKIYVGLFERKEEREAP 159 (369)
T ss_pred CCeeEEeeccchhhhccc
Confidence 999999999887766543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=5.9e-20 Score=203.99 Aligned_cols=170 Identities=27% Similarity=0.417 Sum_probs=146.8
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCC---CcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG---KSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g---~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
++||.||++++|.+++...|.+.|.|.++.|...+..- .|.|||||+|.+.++|+.|++.+ |+.++|+.+.+.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 49999999999999999999999999999987765221 25699999999999999999998 588999999999886
Q ss_pred ccCC---CcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 150 EGLS---GVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 150 ~~~~---~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
.... +.........++|.|+|+|+..+..+++++|..||.+.+|+++...+.+.++|||||+|-+.++|.+|+.++.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 2211 1122233345789999999999999999999999999999999886668889999999999999999999999
Q ss_pred CC-cCCcEEEEEeccCCC
Q 045707 227 KT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 227 ~~-i~g~~l~V~~a~~~~ 243 (901)
.+ +.||.+.+.||....
T Consensus 677 STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred ccceechhhheehhccch
Confidence 65 999999999998754
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.4e-19 Score=177.77 Aligned_cols=182 Identities=25% Similarity=0.373 Sum_probs=150.7
Q ss_pred hhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc--ccccc
Q 045707 63 KSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS--KLIDG 140 (901)
Q Consensus 63 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~--~~l~g 140 (901)
....++.-++++||||-|...-.|+|++.+|..||.|.+|.+.+.. +|.+||+|||.|.+..+|+.||..++ +++.|
T Consensus 10 adsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 10 ADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 3344555678999999999999999999999999999999999986 89999999999999999999999863 34554
Q ss_pred --cccccccccccC------------------------------------------------------------------
Q 045707 141 --RLAVCNLACEGL------------------------------------------------------------------ 152 (901)
Q Consensus 141 --~~i~v~~a~~~~------------------------------------------------------------------ 152 (901)
..+.|+++....
T Consensus 89 ASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA 168 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAA 168 (371)
T ss_pred CccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHH
Confidence 234444330000
Q ss_pred -----------------------------------------------CCcC-----------------------------
Q 045707 153 -----------------------------------------------SGVS----------------------------- 156 (901)
Q Consensus 153 -----------------------------------------------~~~~----------------------------- 156 (901)
.+.+
T Consensus 169 ~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~ 248 (371)
T KOG0146|consen 169 LNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYA 248 (371)
T ss_pred HhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhh
Confidence 0000
Q ss_pred ------------------------------CCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCcee
Q 045707 157 ------------------------------AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRG 206 (901)
Q Consensus 157 ------------------------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG 206 (901)
....+.+++|||-.||.+..+.+|-+.|-+||.|.+.++..|+.|+.+|.
T Consensus 249 g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKC 328 (371)
T KOG0146|consen 249 GVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKC 328 (371)
T ss_pred hHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccc
Confidence 00123568999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCC
Q 045707 207 FGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGK 245 (901)
Q Consensus 207 ~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~ 245 (901)
||||.|++..+|+.||..|||. |+-++++|....+++..
T Consensus 329 FGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 329 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred eeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999998 88899999998776644
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=3.3e-18 Score=196.06 Aligned_cols=124 Identities=15% Similarity=0.252 Sum_probs=101.5
Q ss_pred CCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-----------------------hHHhhh----------------
Q 045707 25 SSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-----------------------AEEIKS---------------- 64 (901)
Q Consensus 25 ~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-----------------------~~~~~~---------------- 64 (901)
.....+|||+|+..+++++|.++|+++|.+.. .+ ...+..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34568999999999999999999999998711 00 000000
Q ss_pred ------------ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhc
Q 045707 65 ------------VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALR 132 (901)
Q Consensus 65 ------------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~ 132 (901)
........++|||+|||.++++++|+++|++||+|.+|++.+|+.+|++||||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 00111235789999999999999999999999999999999999899999999999999999999999
Q ss_pred CCc-ccccccccccccc
Q 045707 133 APS-KLIDGRLAVCNLA 148 (901)
Q Consensus 133 ~~~-~~l~g~~i~v~~a 148 (901)
.+| ..++|+.|+|.++
T Consensus 265 amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HhCCCeeCCeEEEEEec
Confidence 985 5699999998664
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=2.1e-19 Score=194.66 Aligned_cols=181 Identities=24% Similarity=0.403 Sum_probs=158.3
Q ss_pred hhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccc
Q 045707 63 KSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRL 142 (901)
Q Consensus 63 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~ 142 (901)
......+.+.++||+--|+...+..+|.++|+.+|+|..|.++.|+.+++++|.|||+|.|.++...||...|+.+.|.+
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 34555667789999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cccccccccCCCcCC--------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCC
Q 045707 143 AVCNLACEGLSGVSA--------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT 214 (901)
Q Consensus 143 i~v~~a~~~~~~~~~--------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~ 214 (901)
|.|+........... ....+-..||||||..++++++++.+|++||.|+.|.+..|.+||.++|||||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 999876532221111 011122349999999999999999999999999999999999899999999999999
Q ss_pred HHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 215 VEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 215 ~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
.++|.+|++.+|+. +.|+.|+|.....+-
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 99999999999987 999999998876543
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=9.8e-15 Score=136.47 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=129.5
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||||||.++.+.+|+++|.+||.|..|.+...+ ..-+||||+|++..+|+.||... +-.++|..+.|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999998875432 24589999999999999999987 56699999999988
Q ss_pred cccCCCcC--------------------CCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEE
Q 045707 149 CEGLSGVS--------------------AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFG 208 (901)
Q Consensus 149 ~~~~~~~~--------------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~a 208 (901)
........ .....+..+|.|.+||++.++++|++...+-|.|....+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 54321110 111234578999999999999999999999999999999887 478
Q ss_pred EEEeCCHHHHHHHHHcCCCC---cCCcEEEEEe
Q 045707 209 FVTYKTVEAAKKAVDDPHKT---LGGRTIIVKL 238 (901)
Q Consensus 209 FV~F~~~e~A~~Al~~l~~~---i~g~~l~V~~ 238 (901)
.|+|.+.|+.+-|+..+... -.|-...+..
T Consensus 154 vV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 99999999999999998843 2455444444
No 42
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.7e-15 Score=164.19 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=102.5
Q ss_pred CCCChhhhcccCCCCCHHHHHHHHhhhcCCCc---------------------ch---hHHhhh----------------
Q 045707 25 SSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP---------------------SI---AEEIKS---------------- 64 (901)
Q Consensus 25 ~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~---------------------~~---~~~~~~---------------- 64 (901)
...+.+||++|+.++++++|.++|+.++.+.. +. ...+..
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34679999999999999999999999998621 00 001110
Q ss_pred -ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccc--
Q 045707 65 -VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDG-- 140 (901)
Q Consensus 65 -~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g-- 140 (901)
........++|||+|||.++|+++|+++|++||+|..|+|++|+.+|+++|||||+|.+.++|++|++.++ ..+.|
T Consensus 185 ~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 185 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred cccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 11123356789999999999999999999999999999999999999999999999999999999999874 55655
Q ss_pred cccccccccc
Q 045707 141 RLAVCNLACE 150 (901)
Q Consensus 141 ~~i~v~~a~~ 150 (901)
+.+.|.++..
T Consensus 265 ~~l~V~~a~~ 274 (346)
T TIGR01659 265 QPLTVRLAEE 274 (346)
T ss_pred eeEEEEECCc
Confidence 6788887754
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=1.3e-14 Score=138.92 Aligned_cols=84 Identities=36% Similarity=0.580 Sum_probs=78.1
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+||+.++|+++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++.+|+. ++|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34678999999999999999999999999999999999999999999999999999999999999865 99999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=1.6e-14 Score=141.46 Aligned_cols=162 Identities=20% Similarity=0.273 Sum_probs=134.6
Q ss_pred CCCeEEEeCCCcCCCHHHHHH----HHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCA----AFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~----~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
.+.||||.||+..+..++|+. +|++||+|.+|.... |.+.||.|||.|.+.+.|-.|++.+ |--+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999988 999999999877653 7789999999999999999999998 55599999999
Q ss_pred ccccccCCCcC--------------------------------------------CCCccccceEEEcCCCCCCcHHHHH
Q 045707 146 NLACEGLSGVS--------------------------------------------AVPDLAQRKLYIGGLSPEVTTEVLL 181 (901)
Q Consensus 146 ~~a~~~~~~~~--------------------------------------------~~~~~~~~~lfV~nLp~~~tee~L~ 181 (901)
.+|.....-.. .....++..+|+.|+|.+++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99853221100 0113456789999999999999999
Q ss_pred hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC-CcEEEEEecc
Q 045707 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG-GRTIIVKLAD 240 (901)
Q Consensus 182 ~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~-g~~l~V~~a~ 240 (901)
.+|.+|..-..++++... .|.|||+|.+...|..|...+++. +. ...+.|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988754 369999999999999999999864 43 7888888764
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=142.02 Aligned_cols=82 Identities=40% Similarity=0.681 Sum_probs=77.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
+..-++||||||++++..|+|+++|++||+|.++.|+.|+.||++||||||+|.+.++|.+|++..|..|+||+..|.+|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 045707 240 DT 241 (901)
Q Consensus 240 ~~ 241 (901)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 75
No 46
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=6.9e-15 Score=143.92 Aligned_cols=83 Identities=49% Similarity=0.824 Sum_probs=78.9
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.|..-++||||||+|.++.++|+++|++||+|++..|+.|+.||+|||||||+|.|.++|.+|++..+-.|+||+..++.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 045707 148 ACE 150 (901)
Q Consensus 148 a~~ 150 (901)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=1.5e-14 Score=138.35 Aligned_cols=84 Identities=32% Similarity=0.601 Sum_probs=77.5
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||+++|+++|+++|++||+|.+|+++.|+.|++++|||||+|.+.++|++|++.+ +..++|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345779999999999999999999999999999999999999999999999999999999999876 6889999999999
Q ss_pred ccccC
Q 045707 148 ACEGL 152 (901)
Q Consensus 148 a~~~~ 152 (901)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 86543
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.53 E-value=7.2e-14 Score=150.11 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=136.1
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
..+..-|-+++|||++|++||.+||+.++ |.++.+.+ .+|+..|-|||+|.+++++++|++.....+..|-|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 34556788999999999999999999995 77766655 4899999999999999999999999888899999998776
Q ss_pred cccCCCc-----CCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeE-eeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 149 CEGLSGV-----SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE-GSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 149 ~~~~~~~-----~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
....... ..........|-+++||+.+|+++|.++|+..-.+.. +-++.+. .+++.|-|||+|++.+.|++|+
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHH
Confidence 4322211 1111134568999999999999999999998766655 3345554 4889999999999999999999
Q ss_pred HcCCCCcCCcEEEEEecc
Q 045707 223 DDPHKTLGGRTIIVKLAD 240 (901)
Q Consensus 223 ~~l~~~i~g~~l~V~~a~ 240 (901)
......|+.+-|.|-.+.
T Consensus 163 ~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHhhccceEEeehhH
Confidence 998888888999887664
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.52 E-value=2.2e-14 Score=156.17 Aligned_cols=164 Identities=29% Similarity=0.436 Sum_probs=128.6
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
.++|||||..++|+++|+.+|+.||.|..|.+.+|..||+++|||||+|.+.++|.+|+..+ |-++.|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999889999999999999999999998876 55699999998654211
Q ss_pred CCCcC------------------------------------------------------------------CCCc-----
Q 045707 152 LSGVS------------------------------------------------------------------AVPD----- 160 (901)
Q Consensus 152 ~~~~~------------------------------------------------------------------~~~~----- 160 (901)
..... ..+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 10000 0000
Q ss_pred --cccceEEEcCCCC--CCc--------HHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 161 --LAQRKLYIGGLSP--EVT--------TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 161 --~~~~~lfV~nLp~--~~t--------ee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
....|+.++|+=. +.| .+++.+-+++||.|..|.|..+ +-|+.||.|.+.+.|..|+.++|+.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 2234556666521 112 2678888899999998777543 3389999999999999999999965
Q ss_pred -cCCcEEEEEeccC
Q 045707 229 -LGGRTIIVKLADT 241 (901)
Q Consensus 229 -i~g~~l~V~~a~~ 241 (901)
|.|+.|..+|-..
T Consensus 514 WF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 514 WFAGRMITAKYLPL 527 (549)
T ss_pred hhccceeEEEEeeh
Confidence 9999999998654
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=144.08 Aligned_cols=166 Identities=25% Similarity=0.432 Sum_probs=138.3
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-ccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFR-VHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-LIDGRLAVCNLAC 149 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-~l~g~~i~v~~a~ 149 (901)
.|.+||.|||+++.+++|+++|. +.|+|..|.+..|. +|++||+|.|+|+++|.+++|++.+++ .+.||.+.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 56699999999999999999995 57899999999995 899999999999999999999999864 5999999986432
Q ss_pred ccCCC-----------------------------------------------cCC-------------------------
Q 045707 150 EGLSG-----------------------------------------------VSA------------------------- 157 (901)
Q Consensus 150 ~~~~~-----------------------------------------------~~~------------------------- 157 (901)
..... ...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10000 000
Q ss_pred -------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c
Q 045707 158 -------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 158 -------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
-..+-..++||.||.+.+..+.|++.|.--|.|+.+.+-.|+. |.++|+|.++|+++-+|..||..+++. +
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0011235699999999999999999999999999999999987 799999999999999999999999954 5
Q ss_pred CCcEEEEEec
Q 045707 230 GGRTIIVKLA 239 (901)
Q Consensus 230 ~g~~l~V~~a 239 (901)
..++..++..
T Consensus 282 ~~~~~~~Rl~ 291 (608)
T KOG4212|consen 282 FDRRMTVRLD 291 (608)
T ss_pred ccccceeecc
Confidence 6677777664
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.8e-13 Score=138.04 Aligned_cols=214 Identities=15% Similarity=0.273 Sum_probs=160.4
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-chh-------------------H--------------------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SIA-------------------E-------------------------- 60 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~~-------------------~-------------------------- 60 (901)
-+.+|||.+...+.|+.++..|..+|++.. +.. +
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 357899999999999999999999999821 000 0
Q ss_pred ------HhhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 61 ------EIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 61 ------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
-+.......+.-.+|||..+.++.+|+||+..|+.||+|..|++.+++.++.+|||||++|.+..+...|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 00001122234568999999999999999999999999999999999988889999999999999999999999
Q ss_pred ccc-ccccccccccccccCC-----------------------------------------C------------------
Q 045707 135 SKL-IDGRLAVCNLACEGLS-----------------------------------------G------------------ 154 (901)
Q Consensus 135 ~~~-l~g~~i~v~~a~~~~~-----------------------------------------~------------------ 154 (901)
|-. ++|..++|..+..... +
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 854 8888888765410000 0
Q ss_pred ------------------c-CC----------------------------------------------------------
Q 045707 155 ------------------V-SA---------------------------------------------------------- 157 (901)
Q Consensus 155 ------------------~-~~---------------------------------------------------------- 157 (901)
. +.
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 0 00
Q ss_pred --------CCccccceEEEcCC--CCCCc---HHHHHhhhccCCceeEeeeeccCCCCCc----eeEEEEEeCCHHHHHH
Q 045707 158 --------VPDLAQRKLYIGGL--SPEVT---TEVLLNFFGRHGEIEEGSVAYDKDTNES----RGFGFVTYKTVEAAKK 220 (901)
Q Consensus 158 --------~~~~~~~~lfV~nL--p~~~t---ee~L~~~F~~fG~I~~v~i~~d~~tg~~----kG~aFV~F~~~e~A~~ 220 (901)
.....++.+.++|+ |.+++ +.++++.+++||.|.++.|...+.++.. ----||+|+...++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 00012345677887 55554 4789999999999999988877654321 1135999999999999
Q ss_pred HHHcCCCC-cCCcEEEEEecc
Q 045707 221 AVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 221 Al~~l~~~-i~g~~l~V~~a~ 240 (901)
|.+.++|. ++|+++..+.-+
T Consensus 513 ak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHhhccceecCceeehhhhh
Confidence 99999975 899998766543
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=9.7e-13 Score=147.16 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=133.6
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLA 143 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i 143 (901)
.++.....+.++|+|||..+..+++.++|..||+|..+.+. + .|. -|.|+|.+..+|.+|.+.+. ..+...++
T Consensus 378 F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~pl 451 (725)
T KOG0110|consen 378 FSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPL 451 (725)
T ss_pred chhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCcc
Confidence 44466678899999999999999999999999999988544 2 222 39999999999999999874 44666666
Q ss_pred ccccccccCCC-------------cC-------------------CC------------CccccceEEEcCCCCCCcHHH
Q 045707 144 VCNLACEGLSG-------------VS-------------------AV------------PDLAQRKLYIGGLSPEVTTEV 179 (901)
Q Consensus 144 ~v~~a~~~~~~-------------~~-------------------~~------------~~~~~~~lfV~nLp~~~tee~ 179 (901)
++.|+....-. .. .. .....++|||.|+++++|.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 66665311100 00 00 001123499999999999999
Q ss_pred HHhhhccCCceeEeeeeccCCCC---CceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 180 LLNFFGRHGEIEEGSVAYDKDTN---ESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 180 L~~~F~~fG~I~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
+...|...|.|.++.|...++.. .+.|||||+|.+.++|+.|++.|+++ ++|+.|.|+++.
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999888765421 24599999999999999999999977 999999999998
No 53
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=134.88 Aligned_cols=167 Identities=22% Similarity=0.285 Sum_probs=128.3
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVH----GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~----G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
-|-.++||+++|+.|+.++|..- |-.+.|-.++.+ +|+..|-|||.|..+++|+.|+..+.+.++.|.|.+-.+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 47778999999999999999632 234555555554 8999999999999999999999998877887777765442
Q ss_pred cc--------C-----------------CCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCc-eeE--eeeeccCCC
Q 045707 150 EG--------L-----------------SGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE-IEE--GSVAYDKDT 201 (901)
Q Consensus 150 ~~--------~-----------------~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~--v~i~~d~~t 201 (901)
.. . ...-..+.....+|.+++||++.+.|+|-.+|..|-. |.. |.+..+. .
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-q 320 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-Q 320 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-C
Confidence 10 0 0001112334679999999999999999999988854 333 5666664 4
Q ss_pred CCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 202 NESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 202 g~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
|+..|-|||+|.+.|+|..|....+++ ..+|.|.|--+...
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 999999999999999999999999876 45888888776543
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.4e-13 Score=133.92 Aligned_cols=151 Identities=23% Similarity=0.372 Sum_probs=125.2
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
.++|||+||+.+.+++|+++|..||.+.++.+.. |||||+|.+..+|+.|+..+ +..+.|..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999887642 79999999999999999987 56688877888887632
Q ss_pred CCC--------------cCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHH
Q 045707 152 LSG--------------VSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEA 217 (901)
Q Consensus 152 ~~~--------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~ 217 (901)
... ....+....+.+.|.|+...+.+.+|.+.|.++|.+..... .++++||+|++.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 110 01122445678999999999999999999999999965544 33589999999999
Q ss_pred HHHHHHcCCCC-cCCcEEEEEec
Q 045707 218 AKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 218 A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
|.+|+..+++. +.|+.|.+...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 99999999976 99999999443
No 55
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=5.6e-12 Score=129.74 Aligned_cols=168 Identities=19% Similarity=0.260 Sum_probs=134.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIE--------EGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
..++.|||.|||.++|.+++.++|++||-|. .|++.++. .|+-+|=|.+.|-..++++.|++.+ +..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3467799999999999999999999999775 37888886 6999999999999999999999998 567999
Q ss_pred cccccccccccCCC--------------------------------cCCCCccccceEEEcCCC----CCCc-------H
Q 045707 141 RLAVCNLACEGLSG--------------------------------VSAVPDLAQRKLYIGGLS----PEVT-------T 177 (901)
Q Consensus 141 ~~i~v~~a~~~~~~--------------------------------~~~~~~~~~~~lfV~nLp----~~~t-------e 177 (901)
+.|+|..|.-...+ .........++|.++|+= ...+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999887421110 001112345789999982 1223 3
Q ss_pred HHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 178 e~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
++|++-+++||.|.++.|.- ..+.|.+-|.|.+.++|..|++.|+|. ++||.|.......+
T Consensus 291 edl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 67778899999999987753 235689999999999999999999975 99999998876643
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.38 E-value=8.6e-12 Score=140.24 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
-+||||||+|+.+++|.||.++|+.||+|.+|.++. ++|+|||......+|.+|+.++ +..+.++.|++.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 378999999999999999999999999999999875 4599999999999999999998 566999999999997
Q ss_pred ccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhc
Q 045707 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185 (901)
Q Consensus 150 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~ 185 (901)
.......- .+--...+=|.-||++--.++++.+++
T Consensus 494 g~G~kse~-k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 494 GKGPKSEY-KDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCcchhh-hhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 65433200 000111223444566543344666653
No 57
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.37 E-value=9.4e-11 Score=121.32 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=139.3
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC--c-ccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP--S-KLIDGRLAVCN 146 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~--~-~~l~g~~i~v~ 146 (901)
..+-.|.|+||-..++|.||.+..+.||+|..|.++..+ ..|.|+|+|.+.|+.|+... + ..+.|+...++
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 345679999999999999999999999999888776543 57999999999999998764 3 34888888888
Q ss_pred cccccCCCcCCCCccc-cceE--EEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHH
Q 045707 147 LACEGLSGVSAVPDLA-QRKL--YIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~-~~~l--fV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 223 (901)
++.+..-......... +..| -|-|--+.+|-+-|..++.+.|.|.+|.|++. +| --|.|+|++.+.|++|.+
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHh
Confidence 8755433332222222 2333 34466678899999999999999999988875 23 369999999999999999
Q ss_pred cCCCC--cCC-cEEEEEeccCCCCCCCCCCCCCCCCCCC
Q 045707 224 DPHKT--LGG-RTIIVKLADTHKGKPPQTQLPAAVVPVP 259 (901)
Q Consensus 224 ~l~~~--i~g-~~l~V~~a~~~~~~~~~~~~~~~~~~~~ 259 (901)
+||+. +.| ++|+|+||++.+-+..+....++....+
T Consensus 178 alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp 216 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLP 216 (494)
T ss_pred hcccccccccceeEEEEecCcceeeeeecCCccccccCC
Confidence 99975 566 8999999999887776666666655443
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.4e-12 Score=109.02 Aligned_cols=69 Identities=35% Similarity=0.544 Sum_probs=64.0
Q ss_pred EEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 75 lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
|||+|||.++|+++|+++|++||.|..+.+..+ .++.++|||||+|.+.++|++|++.+ +..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 58999999999999999999999965 7778888763
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.8e-12 Score=126.04 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=77.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|-|.||+.++++++|+++|.+||.|..+.+.+|++||.++|||||+|.++++|++||+.|||. ++.--|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4678999999999999999999999999999999999999999999999999999999999999988 888999999998
Q ss_pred CC
Q 045707 241 TH 242 (901)
Q Consensus 241 ~~ 242 (901)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=7.6e-12 Score=135.13 Aligned_cols=152 Identities=26% Similarity=0.404 Sum_probs=119.9
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~a~~ 150 (901)
.++|||+|||.++|+++|+++|.+||.|..+.+..++.+|+++|||||+|.+.++|..|++.++ ..+.|+.+.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999998899999999999999999999999985 789999999999542
Q ss_pred ----cCCCc--------------CCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEe
Q 045707 151 ----GLSGV--------------SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTY 212 (901)
Q Consensus 151 ----~~~~~--------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F 212 (901)
..... ..........+++++++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111 011233567899999999999999999999999997777666554333444444444
Q ss_pred CCHHHHHHHHH
Q 045707 213 KTVEAAKKAVD 223 (901)
Q Consensus 213 ~~~e~A~~Al~ 223 (901)
.....+..+..
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 44444444333
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.31 E-value=4.7e-12 Score=105.86 Aligned_cols=69 Identities=38% Similarity=0.719 Sum_probs=65.1
Q ss_pred EEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 166 lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++.+++. ++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 56999999999999999999999999976 9998875
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=1.8e-12 Score=130.15 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=103.9
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCCc---------------ch----------------hHHhhhccCCCCCCCeEE
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQYP---------------SI----------------AEEIKSVASADPVHRKLF 76 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~~---------------~~----------------~~~~~~~~~~~~~~~~lf 76 (901)
+.+|||||++..++.+|..+|+++|.+.. .. +.......+++...++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~ 82 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLH 82 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccc
Confidence 47999999999999999999999998811 11 112222444556789999
Q ss_pred EeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccccCCCc
Q 045707 77 VRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEGLSGV 155 (901)
Q Consensus 77 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~ 155 (901)
||||.+.+|.++|++.|++||+|.+|+|++| |+||.|+-.++|..|++.+ |.+++|+++.|+.+.++....
T Consensus 83 vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 83 VGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred cCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccC
Confidence 9999999999999999999999999999865 9999999999999999987 788999999999988765554
Q ss_pred CCCCc
Q 045707 156 SAVPD 160 (901)
Q Consensus 156 ~~~~~ 160 (901)
+...+
T Consensus 155 pgmgD 159 (346)
T KOG0109|consen 155 PGMGD 159 (346)
T ss_pred CCCCC
Confidence 44433
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.8e-12 Score=111.77 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
.+++|||||||++.+||++|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|+.|++.. +..++.++|.+.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35789999999999999999999999999999999899989999999999999999999999987 67799999999986
Q ss_pred cc
Q 045707 149 CE 150 (901)
Q Consensus 149 ~~ 150 (901)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=4e-12 Score=106.43 Aligned_cols=69 Identities=33% Similarity=0.520 Sum_probs=62.7
Q ss_pred EEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccc
Q 045707 75 LFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAV 144 (901)
Q Consensus 75 lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~ 144 (901)
|||+|||+++|+++|+++|+.||.|..+.+..++. |.++|+|||+|.+.++|.+|++.++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 9999999999999999999999986 779998763
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5e-12 Score=124.28 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=74.9
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-ccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-LIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-~l~g~~i~v~~a~ 149 (901)
+..+|-|.||+.+++|++|+++|.+||.|..|.+.+|+.||.+||||||+|.+.++|.+||+.++. -++.-.+.|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 567899999999999999999999999999999999999999999999999999999999999854 4888889999986
Q ss_pred cc
Q 045707 150 EG 151 (901)
Q Consensus 150 ~~ 151 (901)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 53
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.28 E-value=9.2e-12 Score=127.08 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~~ 151 (901)
.++|||+|||+++|+++|+++|+.||+|.+|.|++++. ++|||||+|.++++|+.|+..+|..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999999998753 579999999999999999987789999999999988643
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.7e-12 Score=121.56 Aligned_cols=90 Identities=28% Similarity=0.351 Sum_probs=82.0
Q ss_pred hhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 62 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
..++.+.-.++.=|||||||++.||.||.-.|++||+|++|.+++|+.||+|+||||+.|++..+...|+..+ |..|.|
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc
Confidence 3456777788899999999999999999999999999999999999999999999999999999999999988 566999
Q ss_pred ccccccccccc
Q 045707 141 RLAVCNLACEG 151 (901)
Q Consensus 141 ~~i~v~~a~~~ 151 (901)
|.|+|......
T Consensus 105 RtirVDHv~~Y 115 (219)
T KOG0126|consen 105 RTIRVDHVSNY 115 (219)
T ss_pred eeEEeeecccc
Confidence 99999876543
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.25 E-value=1.9e-09 Score=116.47 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=147.5
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCC---------------------cchhHHhhh----------------------
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQY---------------------PSIAEEIKS---------------------- 64 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~---------------------~~~~~~~~~---------------------- 64 (901)
-.+-+..||.+.|++++.+.|+.++..+ ..+....++
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 3566789999999999999999998761 111111111
Q ss_pred ----ccCCC-CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccc
Q 045707 65 ----VASAD-PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLI 138 (901)
Q Consensus 65 ----~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l 138 (901)
....+ ...-.|-.++||+.+|++||.+||+-.-.|.. +.+..+. .+++.|-|||+|++.++|++|+..+...|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhh
Confidence 11111 23557999999999999999999997754444 4456664 78899999999999999999998876666
Q ss_pred cccccccccccc---------------------c----CC---------------C-----------------c------
Q 045707 139 DGRLAVCNLACE---------------------G----LS---------------G-----------------V------ 155 (901)
Q Consensus 139 ~g~~i~v~~a~~---------------------~----~~---------------~-----------------~------ 155 (901)
..|-|.|-.+.. . .. . .
T Consensus 170 GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g 249 (510)
T KOG4211|consen 170 GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG 249 (510)
T ss_pred ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccc
Confidence 666655543310 0 00 0 0
Q ss_pred ----------CCC--------------CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEE
Q 045707 156 ----------SAV--------------PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVT 211 (901)
Q Consensus 156 ----------~~~--------------~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~ 211 (901)
... .......++.++||+..++.++..+|+..-.+ .+.|-... +|+..|-|+|+
T Consensus 250 s~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdve 327 (510)
T KOG4211|consen 250 SYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVE 327 (510)
T ss_pred ccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceee
Confidence 000 00112568899999999999999999986555 56666554 48999999999
Q ss_pred eCCHHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 212 YKTVEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 212 F~~~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
|.+.++|..|+..-...+..+-|..-.
T Consensus 328 F~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 328 FATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred cccchhhHhhhccCCcccCcceeeecc
Confidence 999999999998877556666665543
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=1.8e-10 Score=129.84 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=69.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.++|||||+|+.++++.+|..+|+.||+|.+|.++. ++|||||...++++|.+|+.+|+.. +.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 568999999999999999999999999999998865 4589999999999999999999965 999999999997
Q ss_pred CCCC
Q 045707 241 THKG 244 (901)
Q Consensus 241 ~~~~ 244 (901)
.+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6443
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=126.62 Aligned_cols=87 Identities=21% Similarity=0.384 Sum_probs=76.6
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
.++.....++|+|.|||+...|-||+.+|++||+|.+|.|+.+ ..-|||||||+|++.+||++|-+++ |..+.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3344445689999999999999999999999999999999997 3559999999999999999999887 678999999
Q ss_pred ccccccccCC
Q 045707 144 VCNLACEGLS 153 (901)
Q Consensus 144 ~v~~a~~~~~ 153 (901)
.|+.+..+..
T Consensus 167 EVn~ATarV~ 176 (376)
T KOG0125|consen 167 EVNNATARVH 176 (376)
T ss_pred EEeccchhhc
Confidence 9999976543
No 71
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.24 E-value=4.7e-12 Score=119.04 Aligned_cols=128 Identities=21% Similarity=0.289 Sum_probs=103.6
Q ss_pred ChhhhcccCCCCCHHHHHHHHhhhcCCC-----------------------cchhH------------------Hhhh-c
Q 045707 28 SQDHLRSLLDPLSKSQLVDLLSRLGSQY-----------------------PSIAE------------------EIKS-V 65 (901)
Q Consensus 28 s~~~v~~l~~~~~ee~l~~~~~~~~~~~-----------------------~~~~~------------------~~~~-~ 65 (901)
.++|||+|++-++++.|.++|-++|++- ....+ .... .
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 5899999999999999999999999770 00000 0000 1
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
......+.++|||||.+.++|..|.+.|+.||.+.+ -+++++..||.++|||||.|++.+.+.+|+..+ ++.+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 122334678999999999999999999999998654 478999999999999999999999999999998 677899999
Q ss_pred ccccccccCCCc
Q 045707 144 VCNLACEGLSGV 155 (901)
Q Consensus 144 ~v~~a~~~~~~~ 155 (901)
.|.++..+..+.
T Consensus 170 tv~ya~k~~~kg 181 (203)
T KOG0131|consen 170 TVSYAFKKDTKG 181 (203)
T ss_pred EEEEEEecCCCc
Confidence 999987655443
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.24 E-value=4e-11 Score=127.31 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=122.0
Q ss_pred CCChhhhcccCCCCCHHHHHHHHhhhcCCCcchhH--------------------------------------Hhhh---
Q 045707 26 SSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPSIAE--------------------------------------EIKS--- 64 (901)
Q Consensus 26 ~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~~~~--------------------------------------~~~~--- 64 (901)
...++|+|.++...++|.|.+.|.++|.+...+.. +.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 45799999999999999999999999988111100 0000
Q ss_pred -cc----CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccc
Q 045707 65 -VA----SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLID 139 (901)
Q Consensus 65 -~~----~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~ 139 (901)
.. .+.....+||||+||.++++++++++|++||.|..+.++.|..+.+++|||||+|.+++++++++...-+.+.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~ 164 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFN 164 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeec
Confidence 11 1111244899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCcee
Q 045707 140 GRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE 191 (901)
Q Consensus 140 g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~ 191 (901)
|+.+.|..|.++......... ........|+....+.-.|..+|.-||.+.
T Consensus 165 gk~vevkrA~pk~~~~~~~~~-~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~ 215 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQSTKSS-VSTRGKGNNLGNGRTGFFLKKYFKGYGPVG 215 (311)
T ss_pred CceeeEeeccchhhccccccc-cccccccccccccccccccchhccccCccc
Confidence 999999999876543322110 011112224444444455666677776654
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.22 E-value=5e-11 Score=115.26 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=113.4
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcceEEEEEecchhhHHHHhcCCccc-cc---ccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYD-KATGKSRGYGFITYKHMESTQSALRAPSKL-ID---GRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~-l~---g~~ 142 (901)
....-|||||.+||.++...+|+.+|..|---+.+.+... +.....+.+|||+|.+..+|..|++++|.. ++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445799999999999999999999999865565555443 222236689999999999999999997543 33 345
Q ss_pred cccccccccCCCcCC-----------------------------------------------------------------
Q 045707 143 AVCNLACEGLSGVSA----------------------------------------------------------------- 157 (901)
Q Consensus 143 i~v~~a~~~~~~~~~----------------------------------------------------------------- 157 (901)
+.+..+.........
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 555554321100000
Q ss_pred ---------------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 158 ---------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 158 ---------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
.......+|||.||..++||++|+.+|+.|-.....++... +| ...||++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHH
Confidence 00001247999999999999999999999987776665432 12 347999999999999999
Q ss_pred HcCCCC
Q 045707 223 DDPHKT 228 (901)
Q Consensus 223 ~~l~~~ 228 (901)
..++|.
T Consensus 266 ~~lqg~ 271 (284)
T KOG1457|consen 266 NHLQGN 271 (284)
T ss_pred HHhhcc
Confidence 999865
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=3.9e-11 Score=100.43 Aligned_cols=69 Identities=39% Similarity=0.672 Sum_probs=63.3
Q ss_pred EEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 166 lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
|||+|||+++++++|+++|+.||.|..+.+..+++ |..+|+|||+|.+.++|.+|++.+++. ++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 999999999999999999999999954 9999874
No 75
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.7e-11 Score=114.68 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
.-+++||||||+.++++.||+..|..||++.+|.|.+++ -|||||+|++..+|+.|+..+ +..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999998864 499999999999999999998 68899999999988
Q ss_pred cccC
Q 045707 149 CEGL 152 (901)
Q Consensus 149 ~~~~ 152 (901)
....
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6543
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2e-11 Score=123.36 Aligned_cols=81 Identities=32% Similarity=0.527 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
..-+||||+-|+++++|.+|+..|++||+|..+.|++|+.||+++|||||+|+++.+...|.+.. |..|+|+.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999998876 78899999999875
Q ss_pred cc
Q 045707 149 CE 150 (901)
Q Consensus 149 ~~ 150 (901)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=8.8e-12 Score=123.25 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=87.1
Q ss_pred ccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHH
Q 045707 140 GRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219 (901)
Q Consensus 140 g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 219 (901)
+|.|.|+.+.....+ ...++||||-|...-.|||++.+|.+||.|++|.+.+..+ |.+||||||.|.+.-+|+
T Consensus 2 nrpiqvkpadsesrg------~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAq 74 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG------GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQ 74 (371)
T ss_pred CCCccccccccccCC------ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHH
Confidence 467777776544332 2478999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHcCCC--CcCC--cEEEEEeccCCCCCCC
Q 045707 220 KAVDDPHK--TLGG--RTIIVKLADTHKGKPP 247 (901)
Q Consensus 220 ~Al~~l~~--~i~g--~~l~V~~a~~~~~~~~ 247 (901)
.||..+|+ ++.| ..+.|+|+++.+++.-
T Consensus 75 aAI~aLHgSqTmpGASSSLVVK~ADTdkER~l 106 (371)
T KOG0146|consen 75 AAINALHGSQTMPGASSSLVVKFADTDKERTL 106 (371)
T ss_pred HHHHHhcccccCCCCccceEEEeccchHHHHH
Confidence 99999995 4666 7899999999887654
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3e-11 Score=123.49 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=74.7
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|+|+|||+...|-||+.+|++||.|.+|.|+.+. ..+||||||+|++.+||++|.+++|++ +.||+|+|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 346899999999999999999999999999999999875 458999999999999999999999987 99999999999
Q ss_pred cCCC
Q 045707 240 DTHK 243 (901)
Q Consensus 240 ~~~~ 243 (901)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 8653
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.2e-11 Score=107.63 Aligned_cols=79 Identities=27% Similarity=0.398 Sum_probs=75.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+++|||+||+..++||+|.++|+++|+|..|.+-.|+.+...-|||||+|.+.++|..|++.++++ ++.++|.+.|-.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4789999999999999999999999999999999999988899999999999999999999999988 999999999854
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=8.4e-11 Score=130.66 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=134.8
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~a~~ 150 (901)
...+||+|||...++.+++|+...||.+....++.|..+|.++||||.+|.+......|+..++ ..+.++.+.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 5579999999999999999999999999999999999999999999999999999999999984 558889999888754
Q ss_pred cCCCcCCC------------------CccccceEEEcCC--CCCC-cH-------HHHHhhhccCCceeEeeeecc-C--
Q 045707 151 GLSGVSAV------------------PDLAQRKLYIGGL--SPEV-TT-------EVLLNFFGRHGEIEEGSVAYD-K-- 199 (901)
Q Consensus 151 ~~~~~~~~------------------~~~~~~~lfV~nL--p~~~-te-------e~L~~~F~~fG~I~~v~i~~d-~-- 199 (901)
........ .......|...|+ +.+. ++ |+++.-+++||.|..|.+.++ .
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 32221111 1112233344443 1111 11 556777889999999999987 2
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 200 DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 200 ~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
...-..|..||+|.+.+++++|+++|+|. ++|+.+...|-...+
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 22345678899999999999999999987 999999999976543
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.9e-11 Score=117.61 Aligned_cols=87 Identities=40% Similarity=0.618 Sum_probs=81.5
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++||||+|..++|+.-|...|-+||.|.+++++.|.++++.||||||+|.-.|+|..||..||.. +.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999965 99999999999
Q ss_pred cCCCCCCC
Q 045707 240 DTHKGKPP 247 (901)
Q Consensus 240 ~~~~~~~~ 247 (901)
.+.+.+..
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 98776554
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=4.2e-11 Score=120.15 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=71.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
+.+.+|||+||++.+|+++|+++|+.||+|.+|+|++|. +++|+|||+|.++++|+.|+..+|..|.|+.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 456899999999999999999999999999999999874 55689999999999999999999999999999988764
Q ss_pred c
Q 045707 150 E 150 (901)
Q Consensus 150 ~ 150 (901)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.2e-11 Score=120.34 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=78.2
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
...+-+||||+-|+++++|..|+..|+.||.|+.+++++|+.||+++|||||+|++..+...|.+..++. |+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
+-...
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86543
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=2.8e-11 Score=115.70 Aligned_cols=80 Identities=25% Similarity=0.397 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
....+|-|-||-+.+|.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++++ |.+++|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34678999999999999999999999999999999999999999999999999999999999998 78899999999887
Q ss_pred c
Q 045707 149 C 149 (901)
Q Consensus 149 ~ 149 (901)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 85
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2e-10 Score=124.88 Aligned_cols=168 Identities=24% Similarity=0.316 Sum_probs=123.1
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC-C--Ccce---EEEEEecchhhHHHHhcCCcc----c---
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT-G--KSRG---YGFITYKHMESTQSALRAPSK----L--- 137 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~-g--~~kG---~aFV~F~~~~~A~~Al~~~~~----~--- 137 (901)
-.++||||+||++++|+.|...|..||.+. |........ + ..+| |+|+.|+++.+++.-+.+.-. .
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 367899999999999999999999999876 565532211 1 2566 999999999999887766421 1
Q ss_pred -----ccccccccccc---cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhc-cCCceeEeeeeccCCCCCceeEE
Q 045707 138 -----IDGRLAVCNLA---CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG-RHGEIEEGSVAYDKDTNESRGFG 208 (901)
Q Consensus 138 -----l~g~~i~v~~a---~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~-~fG~I~~v~i~~d~~tg~~kG~a 208 (901)
+..+.+.|... ...........-...+|||||+||.-++.++|..+|+ -||.|..+.|-.|++-+..+|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 12222222211 1111111223345679999999999999999999998 79999999999998889999999
Q ss_pred EEEeCCHHHHHHHHHcCC----CCcCCcEEEEEec
Q 045707 209 FVTYKTVEAAKKAVDDPH----KTLGGRTIIVKLA 239 (901)
Q Consensus 209 FV~F~~~e~A~~Al~~l~----~~i~g~~l~V~~a 239 (901)
-|+|.+..+-.+||.+-- +.--.++|.|+--
T Consensus 417 RVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPY 451 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPY 451 (520)
T ss_pred eeeecccHHHHHHHhhheEEEeccccceeeeecce
Confidence 999999999999998632 3322356666543
No 86
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=9.2e-12 Score=116.71 Aligned_cols=80 Identities=35% Similarity=0.521 Sum_probs=76.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+.-|||||||++.|+.+|-.+|++||+|.+|.+++|+.||+++||||+.|++..+..-|+..+||. |.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3678999999999999999999999999999999999999999999999999999999999999998 999999998765
Q ss_pred C
Q 045707 241 T 241 (901)
Q Consensus 241 ~ 241 (901)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 87
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.13 E-value=1.6e-10 Score=118.16 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEecc
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLAD 240 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~a~ 240 (901)
.++|||+||++++|+++|+++|+.||.|.+|.+..|.. .+|||||+|.+.++|..|+. +++ .+.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999998864 56899999999999999996 664 5999999999854
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.13 E-value=7e-10 Score=116.51 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=129.2
Q ss_pred CCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 72 HRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 72 ~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
+..|-|.||.. .+|.+-|..+|+-||.|.+|+|..++. --|.|+|.|...|+.|++.+ |..+.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 46788999865 579999999999999999999999864 35999999999999999998 778999999998875
Q ss_pred ccCCCcCC-----------------------------CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCC
Q 045707 150 EGLSGVSA-----------------------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKD 200 (901)
Q Consensus 150 ~~~~~~~~-----------------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~ 200 (901)
......+. ...++..+++..|+|.++++|++++.|..-|.........
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 32111110 0113456899999999999999999998888776554443
Q ss_pred CCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC-cEEEEEeccC
Q 045707 201 TNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG-RTIIVKLADT 241 (901)
Q Consensus 201 tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g-~~l~V~~a~~ 241 (901)
++.+.+|.+.+.+.|+|..|+..++.. +++ ..++|+|+++
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 334569999999999999999999854 554 5899999875
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.13 E-value=8.8e-11 Score=125.30 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecch--hhHHHHhcCC-ccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHM--ESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~--~~A~~Al~~~-~~~l~g~~i~v 145 (901)
.....+||||||++++|++||++.|+.||.|.+|.|+++ +| ||||||+|.+. +++.+||..+ |..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345689999999999999999999999999999999954 77 89999999988 6799999987 67899999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
..|.+
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98853
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.11 E-value=2.5e-09 Score=112.43 Aligned_cols=163 Identities=18% Similarity=0.287 Sum_probs=120.4
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecchhhHHHHhcCC-ccc-ccc-cccccccc-
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY-GFITYKHMESTQSALRAP-SKL-IDG-RLAVCNLA- 148 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~-aFV~F~~~~~A~~Al~~~-~~~-l~g-~~i~v~~a- 148 (901)
+++|+|+-+-+|-+-|..+|++||.|..+.-.. + +.|| |.|+|.+.+.|+.|...+ |+. .+| ..+++.++
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-K----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-c----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 588999999999999999999999998543322 1 2344 999999999999998775 443 333 23333332
Q ss_pred ---------cccCCC--------c-----------------------C---------------CCCcc-ccceEEEcCCC
Q 045707 149 ---------CEGLSG--------V-----------------------S---------------AVPDL-AQRKLYIGGLS 172 (901)
Q Consensus 149 ---------~~~~~~--------~-----------------------~---------------~~~~~-~~~~lfV~nLp 172 (901)
..+... . + ..... .+..|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 110000 0 0 00000 14678889986
Q ss_pred C-CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCCC
Q 045707 173 P-EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGKP 246 (901)
Q Consensus 173 ~-~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~~ 246 (901)
. .+|.+.|..+|+-||.|.+|+|+.++. .-|.|+|.+...|+-|++.++|. +.|++|+|.+++-..-..
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 5 569999999999999999999998764 37999999999999999999976 999999999987554433
No 91
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.8e-10 Score=107.92 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=70.8
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+||+..+++.+|...|..||.+.+|-|...+ .|||||+|++..+|+.|+..|++. |+|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999888754 489999999999999999999976 999999999987
Q ss_pred CCCC
Q 045707 241 THKG 244 (901)
Q Consensus 241 ~~~~ 244 (901)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5543
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1.2e-10 Score=111.37 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
....|-|.||.+.++.++|+.+|++||.|-+|.|+.|+.|+.++|||||.|.+..+|+.|+++|++. ++|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3568999999999999999999999999999999999999999999999999999999999999976 999999999987
Q ss_pred CC
Q 045707 241 TH 242 (901)
Q Consensus 241 ~~ 242 (901)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 54
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=2.7e-10 Score=95.08 Aligned_cols=70 Identities=31% Similarity=0.481 Sum_probs=63.9
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVC 145 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v 145 (901)
+|||+|||.++++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|+.|++.++ ..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999876 7889999999999999999999874 6788887765
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=101.55 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=79.5
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.......|||.|+..++|+++|.+.|..||+|+++.+-.|+.||..+|||.|+|.+.++|++|+..+|+. +.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred eccCCC
Q 045707 238 LADTHK 243 (901)
Q Consensus 238 ~a~~~~ 243 (901)
|+..+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 997654
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.07 E-value=4.6e-10 Score=124.50 Aligned_cols=78 Identities=27% Similarity=0.514 Sum_probs=75.0
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACE 150 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~ 150 (901)
+.|||||+|+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.+ +.++.||+++|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999999999998 5789999999999854
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=5.4e-10 Score=95.15 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
.-++.|||+|||.++|.|++.++|++||.|..+++-..++ .+|-|||.|++..+|.+|++.|++. ++++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3467899999999999999999999999999999977654 5799999999999999999999987 99999999998
Q ss_pred cCCC
Q 045707 240 DTHK 243 (901)
Q Consensus 240 ~~~~ 243 (901)
++.+
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 7643
No 97
>PLN03213 repressor of silencing 3; Provisional
Probab=99.06 E-value=3.2e-10 Score=121.11 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCH--HHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV--EAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~--e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
...+||||||++++++++|+..|+.||.|.+|.|++ ++| ||||||+|.+. .++.+||..||+. +.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 468999999999999999999999999999999994 456 89999999987 7899999999987 9999999999
Q ss_pred ccC
Q 045707 239 ADT 241 (901)
Q Consensus 239 a~~ 241 (901)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 976
No 98
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.05 E-value=2e-09 Score=113.63 Aligned_cols=72 Identities=24% Similarity=0.326 Sum_probs=65.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
.++|+|+|||.+.|++.|++-|..||.|.++.|+ +.|+++| .|.|.++++|++|+..|++. ++|+.|+|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4679999999999999999999999999999984 3488887 79999999999999999976 99999999874
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-10 Score=112.32 Aligned_cols=85 Identities=31% Similarity=0.428 Sum_probs=78.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~ 147 (901)
....|+||||+|..++||.-|...|-.||.|.+|.++.|..++++||||||+|...|+|..||..|+ .++.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3467899999999999999999999999999999999999999999999999999999999999985 679999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.+...
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 976443
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=4.6e-10 Score=93.27 Aligned_cols=69 Identities=36% Similarity=0.534 Sum_probs=63.4
Q ss_pred EeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccccc
Q 045707 77 VRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVC 145 (901)
Q Consensus 77 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v 145 (901)
|+|||.++++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|..|++.++ ..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999999999999999988789999999999999999999999875 6688887765
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.03 E-value=8.3e-10 Score=92.07 Aligned_cols=71 Identities=39% Similarity=0.724 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
+|||+|+|.++++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|++|++.+++. +.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 778899999999999999999999955 999998763
No 102
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=4.8e-10 Score=95.50 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=67.9
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
-.+-|||+|||+++|.+++.++|.+||.|..++|-.. ...+|.|||.|++..+|.+|++.+ |..+.++.+.|-+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4678999999999999999999999999999998654 457899999999999999999998 566899988887764
Q ss_pred c
Q 045707 150 E 150 (901)
Q Consensus 150 ~ 150 (901)
.
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 3
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.00 E-value=1.1e-09 Score=90.98 Aligned_cols=70 Identities=41% Similarity=0.707 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 168 IGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 168 V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++. ++|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999999998878999999999999999999999999955 899988773
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=4.8e-10 Score=100.00 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=79.2
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLA 143 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i 143 (901)
..+++..+--|||.|+...+||++|.+.|..||+|.++.+-.|+.||-.+|||.|+|++.++|++|+..+| ..+.|..+
T Consensus 65 gPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 34555566779999999999999999999999999999999999999999999999999999999999985 78999999
Q ss_pred cccccccc
Q 045707 144 VCNLACEG 151 (901)
Q Consensus 144 ~v~~a~~~ 151 (901)
.|.|+..+
T Consensus 145 ~VDw~Fv~ 152 (170)
T KOG0130|consen 145 SVDWCFVK 152 (170)
T ss_pred eEEEEEec
Confidence 99998643
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.9e-09 Score=108.32 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccC
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~ 241 (901)
...+|||+||++.+|+++|+++|+.||.|.+|++++|. ..+|+|||+|.+.++|..|+...+..|.+++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999884 455899999999999999996555669999999987653
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.98 E-value=1.8e-09 Score=119.75 Aligned_cols=84 Identities=26% Similarity=0.533 Sum_probs=79.5
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
+.+||||+|+++++++|..+|+..|.|.++++..|++||+.+||||++|.+.++|.+|++.+|+. +.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999976 99999999999876
Q ss_pred CCCCC
Q 045707 243 KGKPP 247 (901)
Q Consensus 243 ~~~~~ 247 (901)
+.+..
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65443
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2e-09 Score=119.83 Aligned_cols=168 Identities=18% Similarity=0.352 Sum_probs=138.3
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhc-----------C-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVH-----------G-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK 136 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-----------G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~ 136 (901)
...++++||+++|..++++....+|..- | .+..|.+-.. +.|||++|.+.++|..|+...+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhcccch
Confidence 3457789999999999999999999653 4 3666665444 47999999999999999999888
Q ss_pred cccccccccccccccCC-----------------CcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccC
Q 045707 137 LIDGRLAVCNLACEGLS-----------------GVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK 199 (901)
Q Consensus 137 ~l~g~~i~v~~a~~~~~-----------------~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~ 199 (901)
.+.|+.+.+........ ..........+.+||+|||...++++++++...||.+....+..|.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 88888777654322110 0011112345789999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 200 DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 200 ~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
.+|.++||||.+|.+......|++.+||. ++++.+.|..|-..
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 99999999999999999999999999987 88899999888654
No 108
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.92 E-value=2.6e-08 Score=102.39 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=64.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCC--ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC-CCcCCcE-EEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHG--EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KTLGGRT-IIVK 237 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~~i~g~~-l~V~ 237 (901)
...++|||||-+.+|+++|.+....-| .+.++++..++.+|+++|||.|...+..+..+.++.+. ++|.|.. ....
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 356899999999999999988886655 45677888888899999999999999999999999998 4588854 4444
Q ss_pred ec
Q 045707 238 LA 239 (901)
Q Consensus 238 ~a 239 (901)
+.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 43
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=3.3e-09 Score=88.95 Aligned_cols=72 Identities=32% Similarity=0.502 Sum_probs=64.4
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCN 146 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~ 146 (901)
+|+|+|||.++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|++.++ ..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 589999999999999999999999999999998864 4778999999999999999999874 44888887765
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=3.6e-10 Score=129.23 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=131.6
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
+..++||+||+..+.+.+|...|..+|.+..+++....++++.||+|||+|..++++.+|+......+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4567999999999999999999999998888887766778999999999999999999999986554444
Q ss_pred cCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c
Q 045707 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 151 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
...++|+|.|+..|.++++.+++.+|.+++.+++..++ |+.+|.|||.|.+..+|.++....... +
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhh
Confidence 35689999999999999999999999999999888775 999999999999999999999998854 6
Q ss_pred CCcEEEEEeccCCCCCC
Q 045707 230 GGRTIIVKLADTHKGKP 246 (901)
Q Consensus 230 ~g~~l~V~~a~~~~~~~ 246 (901)
.-+.+.|..+.+...++
T Consensus 803 rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 803 RENNGEVQVSNPERDKK 819 (881)
T ss_pred hhcCccccccCCccccc
Confidence 66667777766543333
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=1.3e-09 Score=115.81 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=143.3
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-cccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-LIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-~l~g~~i~v~~a 148 (901)
...++.|+|++..++.+.+...++.++|....+..........++|++.+.|...+.+..|+...+. ...++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3578999999999999999999999999988888888777889999999999999999999998764 566665555444
Q ss_pred cccCCCcC----CCCccccceEE-EcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHH
Q 045707 149 CEGLSGVS----AVPDLAQRKLY-IGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVD 223 (901)
Q Consensus 149 ~~~~~~~~----~~~~~~~~~lf-V~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~ 223 (901)
........ ........++| |+|++.++++++|+..|..+|.|..+++..+..+|.++|||+|.|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 33221111 11122334555 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCcCCcEEEEEeccCCCC
Q 045707 224 DPH-KTLGGRTIIVKLADTHKG 244 (901)
Q Consensus 224 ~l~-~~i~g~~l~V~~a~~~~~ 244 (901)
. + ..+.|+++.+.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 8 5 458999999999876543
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.90 E-value=6.7e-09 Score=87.03 Aligned_cols=73 Identities=40% Similarity=0.737 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++. ++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988654 77899999999999999999999977 9999998864
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=7.9e-09 Score=97.34 Aligned_cols=79 Identities=19% Similarity=0.370 Sum_probs=70.3
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++.+.+|.++|.+||.|..|.+...+ ...+||||+|++..+|+.|+..-++. ++|+.|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46899999999999999999999999999998876443 34579999999999999999999987 999999999987
Q ss_pred CCC
Q 045707 241 THK 243 (901)
Q Consensus 241 ~~~ 243 (901)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 543
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.9e-09 Score=108.78 Aligned_cols=116 Identities=29% Similarity=0.343 Sum_probs=93.6
Q ss_pred cCCCCCHHHHHHHHhhhcCC-CcchhHHhhhccC--CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Q 045707 35 LLDPLSKSQLVDLLSRLGSQ-YPSIAEEIKSVAS--ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG 111 (901)
Q Consensus 35 l~~~~~ee~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g 111 (901)
..+..+++++.+++.+-.-. ...+.+-+..... -.++...|||..|.+-+|++||.-+|+.||+|.+|.|++|..||
T Consensus 199 ~~~g~saeel~e~~~e~ea~~~A~iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktg 278 (479)
T KOG0415|consen 199 DDEGLSAEELEEVLAEKEAKAQAVILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTG 278 (479)
T ss_pred cccccCHHHHHHHHHHHHHHhhHhHHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEeccccc
Confidence 44556777777766543322 2233344444333 34678899999999999999999999999999999999999999
Q ss_pred CcceEEEEEecchhhHHHHhcCC-cccccccccccccccc
Q 045707 112 KSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACE 150 (901)
Q Consensus 112 ~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~ 150 (901)
.+-.||||+|++.+++++|.-.| |..|+++.|.|.++++
T Consensus 279 dsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 279 DSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred chhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 99999999999999999998777 7889999999998754
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=1.5e-09 Score=107.57 Aligned_cols=171 Identities=20% Similarity=0.260 Sum_probs=135.9
Q ss_pred CCCCeEEEeCCCcCCCHHH-H--HHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSET-L--CAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~-L--~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
+..-..+++|+-.++..+- + ...|+.|-.....++.++. -+.-+++||+.|.....-.++-..- ++.+.-+.++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 5556778888877776655 3 6778888777777777775 6778899999999888887776665 44455555666
Q ss_pred ccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcC
Q 045707 146 NLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225 (901)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l 225 (901)
...+......-..-+....+||+|.|..+++++.|...|.+|-.-...++++|+.||+++||+||.|.+..++..|+..|
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 55544433333334456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-cCCcEEEEEeccC
Q 045707 226 HKT-LGGRTIIVKLADT 241 (901)
Q Consensus 226 ~~~-i~g~~l~V~~a~~ 241 (901)
++. ++.++|+.+-+.-
T Consensus 253 ~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccccchhHhhhhhH
Confidence 976 8888888766543
No 116
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=5.5e-10 Score=108.01 Aligned_cols=135 Identities=25% Similarity=0.378 Sum_probs=111.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~ 146 (901)
..+..+||||+|+...+||+-|.|+|-+.|+|..|.|..++ +++.+ ||||.|.++.+..-|++.++ ..+.++.+.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34567999999999999999999999999999999998876 66666 99999999999999999974 45888777665
Q ss_pred cccccCCCcCCCCccccceEEEcC----CCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 147 LACEGLSGVSAVPDLAQRKLYIGG----LSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~lfV~n----Lp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
.- .|+ |...++++.+.+.|+.-|.+..+++..+.+ |+++.++|+.+....+.-.|+
T Consensus 83 ~r-------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 83 LR-------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred cc-------------------cCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHh
Confidence 43 344 667789999999999999999999999876 888888888876555444444
Q ss_pred Hc
Q 045707 223 DD 224 (901)
Q Consensus 223 ~~ 224 (901)
..
T Consensus 143 ~~ 144 (267)
T KOG4454|consen 143 DL 144 (267)
T ss_pred hh
Confidence 33
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.84 E-value=4.7e-09 Score=87.58 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=53.6
Q ss_pred CHHHHHHHHh----hcCCeeEEE-EEecCCC--CCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 85 TSETLCAAFR----VHGEIEEGA-VIYDKAT--GKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 85 te~~L~~~F~----~~G~V~~v~-i~~~~~~--g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
.+++|+++|+ +||.|.++. +..++.+ |.++|||||+|.+.++|.+|++.+ |..+.|+.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3678999998 999999995 7777766 899999999999999999999987 67799998865
No 118
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.84 E-value=7.6e-09 Score=111.60 Aligned_cols=79 Identities=33% Similarity=0.609 Sum_probs=75.7
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
.++|||+|||.++|+++|+++|.+||.|..+.+..|+.+|.++|||||+|.+.++|..|+..+++. +.|+++.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999999999889999999999999999999999999965 9999999999764
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=5.2e-09 Score=120.33 Aligned_cols=168 Identities=25% Similarity=0.322 Sum_probs=133.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
+....++||+|||+..+++.+|+..|..+|.|.+|.|-+-+ -+.-.-||||.|.+.+.+..|...+ +..|..-.+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34568899999999999999999999999999999987654 3455579999999999999998776 344443344444
Q ss_pred cccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
+... .....+.+++++++.++....+...|..||.|..|.+-.. .-||+|.|.+...|+.|...+.
T Consensus 447 lG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHh
Confidence 3321 1224678999999999999999999999999998766432 2499999999999999999999
Q ss_pred CC-cCC--cEEEEEeccCCCCCCCCCC
Q 045707 227 KT-LGG--RTIIVKLADTHKGKPPQTQ 250 (901)
Q Consensus 227 ~~-i~g--~~l~V~~a~~~~~~~~~~~ 250 (901)
+. ++| +.+.|.||......+.+..
T Consensus 513 gap~G~P~~r~rvdla~~~~~~Pqq~~ 539 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPPGATPQQNL 539 (975)
T ss_pred cCcCCCCCcccccccccCCCCChhhhc
Confidence 77 766 8899999987665554433
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=9e-09 Score=85.88 Aligned_cols=60 Identities=27% Similarity=0.382 Sum_probs=53.6
Q ss_pred HHHHHhhhc----cCCceeEee-eeccCCC--CCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 177 TEVLLNFFG----RHGEIEEGS-VAYDKDT--NESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 177 ee~L~~~F~----~fG~I~~v~-i~~d~~t--g~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
+++|+++|+ +||.|.++. +..++.+ |.++|||||+|.+.++|.+|++.||+. +.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777766 899999999999999999999999976 99999876
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.81 E-value=3.4e-08 Score=101.60 Aligned_cols=74 Identities=20% Similarity=0.409 Sum_probs=64.4
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHG--EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
.-.+|||||-|++|++||.+....-| .+.++++..++.+|++||||.|...+..+.++.++.+ .++|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34589999999999999999998887 5788899999999999999999999999999999988 46688865444
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.1e-08 Score=81.38 Aligned_cols=55 Identities=35% Similarity=0.647 Sum_probs=49.1
Q ss_pred HHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 180 LLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 180 L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
|+++|++||.|.++.+..+. +|+|||+|.+.++|.+|++.+|+. ++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987654 479999999999999999999976 99999999986
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=9.7e-08 Score=99.09 Aligned_cols=78 Identities=35% Similarity=0.497 Sum_probs=69.3
Q ss_pred CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC-CC-cCCcEEE
Q 045707 158 VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KT-LGGRTII 235 (901)
Q Consensus 158 ~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~~-i~g~~l~ 235 (901)
..+....+|||+||...+++.+|++.|.+||+|.++.+...+ |+|||+|.+.++|+.|.+..- .. |+|.+|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345567899999999999999999999999999999998653 599999999999999988765 43 9999999
Q ss_pred EEeccC
Q 045707 236 VKLADT 241 (901)
Q Consensus 236 V~~a~~ 241 (901)
|.|+.+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=99.08 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=122.3
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
..++.-|-.++||+..++.++-.+|.-.........+-....|+..|.|.|.|.|.|.-+.|++.....+.++.|.|..+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 34555677789999999999999997653322223333334788889999999999999999999888899999998776
Q ss_pred cccCC-------CcCCCC---ccccceEEEcCCCCCCcHHHHHhhhccC----CceeEeeeeccCCCCCceeEEEEEeCC
Q 045707 149 CEGLS-------GVSAVP---DLAQRKLYIGGLSPEVTTEVLLNFFGRH----GEIEEGSVAYDKDTNESRGFGFVTYKT 214 (901)
Q Consensus 149 ~~~~~-------~~~~~~---~~~~~~lfV~nLp~~~tee~L~~~F~~f----G~I~~v~i~~d~~tg~~kG~aFV~F~~ 214 (901)
....- .....+ ....-.|..++||+++++.++.++|.+. |..+.+-++..+ .|+.+|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecC
Confidence 43211 001111 1223457788999999999999999643 234445444444 48999999999999
Q ss_pred HHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 215 VEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 215 ~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
+++|+.|+....+.++.|.|.+-.
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999998776656656555433
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=5.3e-08 Score=94.33 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=73.3
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-ccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVH-GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-LIDGRLA 143 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-~l~g~~i 143 (901)
........-+||+.+|..+.+.++..+|.++ |.|..+++.|++.||.|+|||||+|++++.|.-|-+.||. .+.|+.+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3444566789999999999999999999999 7899999999999999999999999999999999999865 4777888
Q ss_pred cccccc
Q 045707 144 VCNLAC 149 (901)
Q Consensus 144 ~v~~a~ 149 (901)
.|..-.
T Consensus 123 ~c~vmp 128 (214)
T KOG4208|consen 123 ECHVMP 128 (214)
T ss_pred eeEEeC
Confidence 777653
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.7e-08 Score=102.68 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=78.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
.++.+.|||-.|.+-+|+++|.-+|+.||.|.+|.|++|..||.+-.||||+|.+.+++++|.=.|+.. |+.++|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 345789999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87643
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.62 E-value=8.6e-08 Score=92.92 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=75.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccC-CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRH-GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~f-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....-+||+.+|.-+.+.++..+|.+| |.+...++.+++.||+++|||||+|.+.+.|.-|.+.||++ +.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345678999999999999999999998 88888888899999999999999999999999999999988 889999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 97765
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.61 E-value=2.5e-07 Score=91.36 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=73.6
Q ss_pred cceEEEcCCCCCCcHHHHHh----hhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 163 QRKLYIGGLSPEVTTEVLLN----FFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~----~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
+.+|||.||+..+..++|+. +|++||.|.+|.... |.+.+|-|||.|++.+.|..|+..|+|. +.|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999888 999999999988774 5789999999999999999999999998 999999999
Q ss_pred eccCCCCCCC
Q 045707 238 LADTHKGKPP 247 (901)
Q Consensus 238 ~a~~~~~~~~ 247 (901)
||.++.....
T Consensus 86 yA~s~sdii~ 95 (221)
T KOG4206|consen 86 YAKSDSDIIA 95 (221)
T ss_pred cccCccchhh
Confidence 9998765443
No 129
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.59 E-value=3.7e-08 Score=78.23 Aligned_cols=55 Identities=25% Similarity=0.492 Sum_probs=47.5
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 89 LCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 89 L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
|+++|++||+|.++.+..+. +|+|||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987653 589999999999999999976 67799999999875
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.54 E-value=1.3e-07 Score=102.85 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~ 147 (901)
...++++||.+|...+...||+.+|++||+|+..+|+.+..+--.++||||++.+.++|.+||+.++ +.+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457899999999999999999999999999999999998777789999999999999999999985 679999999998
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8643
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.54 E-value=5.3e-06 Score=86.75 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=147.9
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCC-------------------------------------------cchhHHhh
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQY-------------------------------------------PSIAEEIK 63 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~-------------------------------------------~~~~~~~~ 63 (901)
+--+.|+++-..++|.++.+.++.+|++. -+....+.
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE 110 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc
Confidence 34688999999999999999999999870 00011111
Q ss_pred hccCCCCC-CCeEE--EeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cc-c
Q 045707 64 SVASADPV-HRKLF--VRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KL-I 138 (901)
Q Consensus 64 ~~~~~~~~-~~~lf--V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~-l 138 (901)
+...+... +.-|. |-|=-+.+|-+-|..+....|+|.+|.|++. +| -.|.|+|++.+.|++|...+| .. +
T Consensus 111 R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 111 RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhccccccc
Confidence 12211111 22233 3454567899999999999999999888765 44 369999999999999999874 33 3
Q ss_pred cc-cccccccccccC--------------------------C-----Cc-------------------------------
Q 045707 139 DG-RLAVCNLACEGL--------------------------S-----GV------------------------------- 155 (901)
Q Consensus 139 ~g-~~i~v~~a~~~~--------------------------~-----~~------------------------------- 155 (901)
.| ..++|.+|.+.. . ..
T Consensus 186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P 265 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPP 265 (494)
T ss_pred ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCC
Confidence 34 345555542100 0 00
Q ss_pred --------------CCCCccccceEEEcCCCCCC-cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHH
Q 045707 156 --------------SAVPDLAQRKLYIGGLSPEV-TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKK 220 (901)
Q Consensus 156 --------------~~~~~~~~~~lfV~nLp~~~-tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 220 (901)
.......+..+.|.+|+... +-+.|..+|-.||.|..|++++.+. |-|.|+..+..+.++
T Consensus 266 ~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver 340 (494)
T KOG1456|consen 266 SRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVER 340 (494)
T ss_pred CCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHH
Confidence 00011234568889997654 7789999999999999999998654 689999999999999
Q ss_pred HHHcCCCC-cCCcEEEEEeccCC
Q 045707 221 AVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 221 Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
|+..+|+. +-|.+|.|.+++..
T Consensus 341 ~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 341 AVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred HHHHhccCccccceEEEeecccc
Confidence 99999976 89999999997643
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=3e-07 Score=95.58 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=70.3
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-c-ccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-S-KLIDGRL 142 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~-~~l~g~~ 142 (901)
..-.|..-++||||||-..++|.+|++.|.+||+|.++.+...+ |+|||+|.+.++|+.|.... + ..|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34456678899999999999999999999999999999988654 79999999999999998876 4 5599999
Q ss_pred cccccccc
Q 045707 143 AVCNLACE 150 (901)
Q Consensus 143 i~v~~a~~ 150 (901)
+.|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999866
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=5.7e-06 Score=91.60 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=121.0
Q ss_pred HHHHHHHhhhcCCCcchhHHhhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEe
Q 045707 42 SQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITY 121 (901)
Q Consensus 42 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F 121 (901)
-+|-..|+.+.+.... ......+-..++|+|-|||.++++++|..+|+.||+|.+|+. |-..+|..||+|
T Consensus 50 ~~l~a~f~~~~~p~~~-----~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~F 119 (549)
T KOG4660|consen 50 SELSALFEPFNKPLRP-----DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEF 119 (549)
T ss_pred hhHHhhhhccCCCCCc-----CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEE
Confidence 4555566655433322 445555677899999999999999999999999999998664 344679999999
Q ss_pred cchhhHHHHhcCC-cccccccccccccccccCCCc---------------CCCCccccceEEEcCCCCCCcHHHHHhhhc
Q 045707 122 KHMESTQSALRAP-SKLIDGRLAVCNLACEGLSGV---------------SAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185 (901)
Q Consensus 122 ~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~---------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~ 185 (901)
.|..+|+.|++++ +..+.|+.+............ ...+....+-=.++.|++..+...++.++.
T Consensus 120 yDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~ 199 (549)
T KOG4660|consen 120 YDVRDAERALKALNRREIAGKRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISS 199 (549)
T ss_pred eehHhHHHHHHHHHHHHhhhhhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchh
Confidence 9999999999998 567999888733221110000 000111111122334888888888888888
Q ss_pred cCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 186 RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 186 ~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
-+|.+.. +- ++.-..--|+.|.+..++..+...+ |. +.+....+.++.+
T Consensus 200 ~~~~~~~-~~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 200 VDGSSPG-RE-----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccCcccc-cc-----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 8888765 22 2322235578888888885555533 44 5666666666554
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=6.9e-06 Score=80.26 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=70.4
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeec-cCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c---CCcEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAY-DKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L---GGRTIIV 236 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~-d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i---~g~~l~V 236 (901)
..++|||.|||.++..-+|+.+|..|-.-+.+.+.. ++....++-+|||+|.+.++|..|+..+||. + .+..+++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 478999999999999999999999986666655543 3333346679999999999999999999986 4 4789999
Q ss_pred EeccCCCCCCCC
Q 045707 237 KLADTHKGKPPQ 248 (901)
Q Consensus 237 ~~a~~~~~~~~~ 248 (901)
++|+++..+...
T Consensus 113 ElAKSNtK~kr~ 124 (284)
T KOG1457|consen 113 ELAKSNTKRKRR 124 (284)
T ss_pred eehhcCcccccC
Confidence 999887655443
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.32 E-value=1.1e-06 Score=96.03 Aligned_cols=82 Identities=32% Similarity=0.509 Sum_probs=75.8
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||.+|...+...+|+.+|++||.|.-++|+.+..+-..+.||||++.+.++|.+||+.||.+ +.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4578999999999999999999999999999999998877778999999999999999999999977 999999999987
Q ss_pred CCC
Q 045707 241 THK 243 (901)
Q Consensus 241 ~~~ 243 (901)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 643
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=1.2e-06 Score=96.87 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=69.4
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
..+|||+|||.++++++|+++|..||.|+...|......++..+||||+|.+.++++.|+.+....++|+++.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4569999999999999999999999999999887764345555999999999999999999998889999999986544
No 137
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=5.8e-06 Score=93.93 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHHhhcCCcCcCChhhhh------cCChHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCchh
Q 045707 400 MLEYLHLTRNLPFMDAEHMS------KNSPHFVEKLIERFENQLDVQRLIARFLRYHPINEFEPF 458 (901)
Q Consensus 400 ~~~~l~~~~~~~~~~a~~~~------~~s~~~~~~l~~~~~~~~~~~~~~~r~l~~~~i~~~~~f 458 (901)
|+=||-|-| +++++--.+. --|-.+|.+|++-+-..+.+.++-.=-=-|.++.|-|.|
T Consensus 704 LsIflgS~r-mpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF 767 (1102)
T KOG1924|consen 704 LSIFLGSFR-MPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQF 767 (1102)
T ss_pred HHHHHhhcc-CCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHH
Confidence 566666555 6664432221 124456666666655444443332222234455555544
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.24 E-value=9.6e-07 Score=88.01 Aligned_cols=84 Identities=27% Similarity=0.423 Sum_probs=74.8
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.+-+.++-+||.|.|..+++++-|-..|.+|-.-...++++|+.||+++|||||.|.+..++..|++++ |+.++.++|.
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 334456789999999999999999999999998888999999999999999999999999999999998 5678888888
Q ss_pred ccccc
Q 045707 145 CNLAC 149 (901)
Q Consensus 145 v~~a~ 149 (901)
...+.
T Consensus 264 lRkS~ 268 (290)
T KOG0226|consen 264 LRKSE 268 (290)
T ss_pred hhhhh
Confidence 76553
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=5.8e-06 Score=93.16 Aligned_cols=82 Identities=23% Similarity=0.465 Sum_probs=72.7
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccC---CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK---DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l 234 (901)
.++..+++||+||++.++++.|...|+.||.|..++++..+ +..+.+.||||-|.+..+|++|++.|++. +.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35667899999999999999999999999999999988654 23566779999999999999999999976 899999
Q ss_pred EEEecc
Q 045707 235 IVKLAD 240 (901)
Q Consensus 235 ~V~~a~ 240 (901)
++.|++
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999976
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.21 E-value=2.4e-07 Score=97.80 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=119.2
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc--ccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS--KLIDGRLAVCNLACE 150 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~--~~l~g~~i~v~~a~~ 150 (901)
..+|++||.+.++..||..+|...-.-.+-.++. -.|||||.+.+...|.+|++.++ ..+.|+++.+.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997652111112222 23899999999999999999984 348999999987765
Q ss_pred cCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeee-ccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVA-YDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 151 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
+.. ..+.+-|+|+|+...++.+..+...||.++.|... .|.++ -..-|+|.+.+.+..|+..+++.
T Consensus 76 kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 76 KKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred HHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchH
Confidence 433 25668999999999999999999999999988653 33332 22347899999999999999976
Q ss_pred cCCcEEEEEeccCC
Q 045707 229 LGGRTIIVKLADTH 242 (901)
Q Consensus 229 i~g~~l~V~~a~~~ 242 (901)
+....+++.|-...
T Consensus 144 ~en~~~k~~YiPde 157 (584)
T KOG2193|consen 144 LENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhhhcccCchh
Confidence 88888888886543
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.19 E-value=8.9e-06 Score=90.19 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTH 242 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~~ 242 (901)
..+|||+|||.+++.++|+++|..||.|+...|....-.++..+||||+|.+.++++.|+.+..-.++|+++.|+-..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 34599999999999999999999999999988876543345559999999999999999999866699999999876653
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.19 E-value=1.4e-06 Score=89.57 Aligned_cols=90 Identities=17% Similarity=0.231 Sum_probs=81.1
Q ss_pred hhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccc
Q 045707 62 IKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGR 141 (901)
Q Consensus 62 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~ 141 (901)
.....+.+.+.+.+||+|+.+.+|.+++...|+.||.|..+.|..|+.+|.++|||||+|.+.+.+.+|+...+..+.|+
T Consensus 91 ~~~~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~ 170 (231)
T KOG4209|consen 91 KFPERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGP 170 (231)
T ss_pred cchhhhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccc
Confidence 33345677789999999999999999999999999999999999999999999999999999999999999778899999
Q ss_pred cccccccccc
Q 045707 142 LAVCNLACEG 151 (901)
Q Consensus 142 ~i~v~~a~~~ 151 (901)
.+.+.+....
T Consensus 171 ~i~vt~~r~~ 180 (231)
T KOG4209|consen 171 AIEVTLKRTN 180 (231)
T ss_pred cceeeeeeee
Confidence 9999876543
No 143
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=1.8e-05 Score=90.03 Aligned_cols=21 Identities=14% Similarity=-0.122 Sum_probs=11.6
Q ss_pred cccCCcccccccchhHHHHHH
Q 045707 828 LVSFPSYFNYTEERIKLRFLM 848 (901)
Q Consensus 828 i~~~P~~L~ysleri~pR~~~ 848 (901)
+-+.+.=.+--|+|-+.||+.
T Consensus 1063 ~prq~~~r~g~l~rsrsrh~~ 1083 (1102)
T KOG1924|consen 1063 LPRQTRGRRGCLDRSRSRHQN 1083 (1102)
T ss_pred cCCCCcccccchhhhhHhhhh
Confidence 334444456666666666654
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.09 E-value=7.3e-06 Score=84.03 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=75.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
....+|+|.|||+.+++++|+++|..||.++.+-+.+++. |.+.|.|-|.|...++|.+|++.+++. ++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3457899999999999999999999999999999988875 999999999999999999999999988 99999999887
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 76543
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.06 E-value=1.4e-05 Score=82.38 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=75.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
......+||+|++..+|.+++...|+.||.|..+.+..|+.+|+++|||||+|.+.+.++.|+. +++. +.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456789999999999999999999999999999999999999999999999999999999999 7755 9999999999
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
...+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 146
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.94 E-value=1.5e-05 Score=81.69 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
....+|+|.|||+.++++||+++|..||.+..+-+-+++ +|++.|.|=|.|...++|..|++.. +..++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999999999986 8999999999999999999999987 55599999887765
Q ss_pred c
Q 045707 149 C 149 (901)
Q Consensus 149 ~ 149 (901)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 4
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=1.4e-05 Score=90.15 Aligned_cols=85 Identities=15% Similarity=0.285 Sum_probs=73.3
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKA---TGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~---~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
....++..+++||+||++.++++.|...|..||+|.+++|+.-+. ..+.+-+|||-|.+..+|+.|++.+ |..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 334467788999999999999999999999999999999987642 2346678999999999999999998 677899
Q ss_pred ccccccccc
Q 045707 141 RLAVCNLAC 149 (901)
Q Consensus 141 ~~i~v~~a~ 149 (901)
+.+++.|+.
T Consensus 247 ~e~K~gWgk 255 (877)
T KOG0151|consen 247 YEMKLGWGK 255 (877)
T ss_pred eeeeecccc
Confidence 999998874
No 148
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.89 E-value=2.3e-05 Score=81.68 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeE--------eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE--------GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR 232 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~ 232 (901)
.+..|||.|||.++|.+++.++|++||.|.. |++.++.+ |+.+|-|.+.|-..++..-|++.|+.. +.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4566999999999999999999999998854 67888865 999999999999999999999999976 9999
Q ss_pred EEEEEecc
Q 045707 233 TIIVKLAD 240 (901)
Q Consensus 233 ~l~V~~a~ 240 (901)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999986
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.89 E-value=2.6e-05 Score=76.13 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|+...++++.|.++|-+-|.|..+.|..+++ ++.+ ||||.|.++-+..-|++.+|+. +.+..+.+++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 478999999999999999999999999999999988876 6666 9999999999999999999987 888888887754
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=1.4e-05 Score=88.70 Aligned_cols=71 Identities=31% Similarity=0.501 Sum_probs=63.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
+...++|+|-|||..+++++|+.+|+.||+|..++.- -..+|..||+|.|..+|++|++++++. +.|+.++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4457899999999999999999999999999986644 345689999999999999999999965 9998888
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.86 E-value=2.4e-05 Score=88.04 Aligned_cols=169 Identities=16% Similarity=0.054 Sum_probs=127.3
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
.+..-+-+++.+++.++.|++++|... .|.++.|..+...+...|-++|+|....++++|++.++..+-.|.+.+..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 345567778999999999999999643 3566667666555555799999999999999999998877777777775442
Q ss_pred ccCC--------C-------------------------cCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeE-eee
Q 045707 150 EGLS--------G-------------------------VSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE-GSV 195 (901)
Q Consensus 150 ~~~~--------~-------------------------~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-v~i 195 (901)
...- . ....+.....+|||..||..+++..+-+.|..--.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 1000 0 00012234578999999999999999999988777776 555
Q ss_pred eccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 196 AYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 196 ~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+-+ +++.++.|||.|.+.+++.+|...-++. ++.+.|+|.-..
T Consensus 468 t~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 468 TRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred ccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 5554 5888999999999999999998877755 666888886543
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.84 E-value=6.8e-05 Score=65.79 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCcHHHHHhhhcc--CCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c----CCcEEEE
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGR--HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L----GGRTIIV 236 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~--fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i----~g~~l~V 236 (901)
++|-|+|+|...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+.+.|.+-.+..+|. + ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988843 377888899999999999999999999999999999999854 3 3467788
Q ss_pred EeccC
Q 045707 237 KLADT 241 (901)
Q Consensus 237 ~~a~~ 241 (901)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 153
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=7.7e-06 Score=94.56 Aligned_cols=164 Identities=19% Similarity=0.137 Sum_probs=131.2
Q ss_pred CCCCCCeEEEeCCCcCCCHH-HHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSE-TLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~-~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
.....+..++.|+.+...+. ..+..|..+|.|..+++......-....++++++....+++.|....+.-+.++...+.
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCC
Confidence 34456778889988887766 67889999999999988763222223338999999999999999998888999998888
Q ss_pred cccccCCCcCCCCc----cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 147 LACEGLSGVSAVPD----LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 147 ~a~~~~~~~~~~~~----~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
.+............ ....++||+||+....+++|...|..+|.+..+++....++++-+|+||+.|...++|.+|+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 77654432222111 23467999999999999999999999999999988877778999999999999999999999
Q ss_pred HcCCCCcCC
Q 045707 223 DDPHKTLGG 231 (901)
Q Consensus 223 ~~l~~~i~g 231 (901)
....+.+.|
T Consensus 727 ~f~d~~~~g 735 (881)
T KOG0128|consen 727 AFRDSCFFG 735 (881)
T ss_pred hhhhhhhhh
Confidence 988866544
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.72 E-value=0.0001 Score=64.71 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=55.0
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVH--GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~--G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
+||.|+|||...|.++|.+++... |..--+.++.|..++.+.|||||-|.+++.|.+-.+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f 65 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAF 65 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHH
Confidence 789999999999999999998664 56666788889889999999999999999999988774
No 155
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00022 Score=78.63 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=88.6
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-----------------------------chhHHhh--------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-----------------------------SIAEEIK-------------- 63 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-----------------------------~~~~~~~-------------- 63 (901)
+..+|||.|+.+++|+++...|.++|.... .|...+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vs 338 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVS 338 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEe
Confidence 679999999999999999999999998710 0110000
Q ss_pred -----------------------hccCCCCCCCeEEEeCCCcCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcceEEEE
Q 045707 64 -----------------------SVASADPVHRKLFVRGLAWNTTSETLCAAFR-VHGEIEEGAVIYDKATGKSRGYGFI 119 (901)
Q Consensus 64 -----------------------~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~V~~v~i~~~~~~g~~kG~aFV 119 (901)
...+.-...+|||||+||.-+|.++|..+|+ -||-|.-+-|-.|++-+-.+|-|=|
T Consensus 339 s~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRV 418 (520)
T KOG0129|consen 339 SPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRV 418 (520)
T ss_pred cCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCccee
Confidence 0222234578999999999999999999998 7999999999999778889999999
Q ss_pred EecchhhHHHHhcC
Q 045707 120 TYKHMESTQSALRA 133 (901)
Q Consensus 120 ~F~~~~~A~~Al~~ 133 (901)
+|.+..+-.+||.+
T Consensus 419 tFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 419 TFSNQQAYIKAISA 432 (520)
T ss_pred eecccHHHHHHHhh
Confidence 99999999999987
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.53 E-value=4.3e-05 Score=80.67 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=115.6
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT---GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~---g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
..-|.|.||.+++|.++++.+|.-.|+|.+++++.+..+ ......|||.|.|...+..|....|+.+-|+.+.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 448999999999999999999999999999998774322 23557899999999999999988888777766665433
Q ss_pred cccCCCc-------------------------CC--------------CC-----------ccccceEEEcCCCCCCcHH
Q 045707 149 CEGLSGV-------------------------SA--------------VP-----------DLAQRKLYIGGLSPEVTTE 178 (901)
Q Consensus 149 ~~~~~~~-------------------------~~--------------~~-----------~~~~~~lfV~nLp~~~tee 178 (901)
....... .. .+ ..-.++++|++|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 2100000 00 00 0113579999999999999
Q ss_pred HHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 179 VLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 179 ~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
++-+.|..+|+|....+.- |-..-+|-+.|....+...|+..++..
T Consensus 167 e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre 212 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRE 212 (479)
T ss_pred hhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchh
Confidence 9999999999998877654 333457779999988888888887743
No 157
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.00011 Score=73.66 Aligned_cols=71 Identities=30% Similarity=0.514 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
..+||+++|+.+.+.++..+|..||.+.++.+.. ||+||+|.+..+|..|+..+|+. ++|..+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3689999999999999999999999999886642 69999999999999999999976 88877888888754
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.30 E-value=0.00021 Score=76.39 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=70.8
Q ss_pred CCeEE-EeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 72 HRKLF-VRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lf-V~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
..++| |+|++.++|+++|++.|..+|.|..+++..+..+|.++|||||.|.+...+..|+...+..+.|+.+.+.....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34566 99999999999999999999999999999999999999999999999999999998844568888888877644
Q ss_pred c
Q 045707 151 G 151 (901)
Q Consensus 151 ~ 151 (901)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 3
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.11 E-value=0.00088 Score=55.89 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=47.2
Q ss_pred ceEEEcCCCCCCcHHH----HHhhhccCC-ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 164 RKLYIGGLSPEVTTEV----LLNFFGRHG-EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~----L~~~F~~fG-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
..|+|.|||.+.+... |++++..+| .|..+. .|.|.|.|.+.+.|.+|.+.|++. +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999987765 556677776 444431 157999999999999999999987 999999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.07 E-value=0.00087 Score=60.36 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC-C-----CcCCcEEEEE
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-K-----TLGGRTIIVK 237 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~-----~i~g~~l~V~ 237 (901)
..|+|.|++..++.++|++.|++||.|.+|.+..... .|+|.|.+.++|++|++.+. . .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999998876532 68999999999999998664 2 2566555554
Q ss_pred e
Q 045707 238 L 238 (901)
Q Consensus 238 ~ 238 (901)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 161
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=96.99 E-value=0.00058 Score=46.35 Aligned_cols=30 Identities=33% Similarity=0.682 Sum_probs=27.0
Q ss_pred HHHhhcCCccccCHHHHHHHHHHHHHhcCCC
Q 045707 794 EMIRVSPQILNMKKDVIKSKIDFLVNYLGYP 824 (901)
Q Consensus 794 ~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~ 824 (901)
.+|.++|.||+++.++|+++++||. ++|++
T Consensus 2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~ 31 (31)
T smart00733 2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS 31 (31)
T ss_pred chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence 4788999999999889999999999 69974
No 162
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.93 E-value=0.015 Score=64.77 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=59.0
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhc--cCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC---CCcCCcEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFG--RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH---KTLGGRTII 235 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~--~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~---~~i~g~~l~ 235 (901)
.+.+.|.++-||.++-.|+++.+|. .+-.+.+|.+..+.. -||+|++..||+.|.+.+. ++|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3456788899999999999999995 466788888876542 5899999999999999987 459999887
Q ss_pred EEec
Q 045707 236 VKLA 239 (901)
Q Consensus 236 V~~a 239 (901)
.+..
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 6554
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.93 E-value=0.0011 Score=70.42 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIE--------EGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID 139 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~ 139 (901)
.....+|||-++|..++++++.++|.++|.|. .+.+.+|++|++.||-|-|+|.|...|+.|+... ++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45677999999999999999999999999774 3678889999999999999999999999999986 67799
Q ss_pred cccccccccccc
Q 045707 140 GRLAVCNLACEG 151 (901)
Q Consensus 140 g~~i~v~~a~~~ 151 (901)
|..|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999998887544
No 164
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.90 E-value=0.0015 Score=54.49 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=45.9
Q ss_pred CeEEEeCCCcCCCHHHH----HHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETL----CAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L----~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
..|||.|||.+.+...+ +.++.-|| +|.+|. .|.|.|.|.+.+.|++|.+.+ |..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999987665 45666786 666541 267999999999999999987 667999999999
Q ss_pred cccc
Q 045707 147 LACE 150 (901)
Q Consensus 147 ~a~~ 150 (901)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.84 E-value=0.002 Score=66.97 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=63.5
Q ss_pred ccceEEEcCCCCCCcHHHH------HhhhccCCceeEeeeeccCCC-CCceeE--EEEEeCCHHHHHHHHHcCCCC-cCC
Q 045707 162 AQRKLYIGGLSPEVTTEVL------LNFFGRHGEIEEGSVAYDKDT-NESRGF--GFVTYKTVEAAKKAVDDPHKT-LGG 231 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L------~~~F~~fG~I~~v~i~~d~~t-g~~kG~--aFV~F~~~e~A~~Al~~l~~~-i~g 231 (901)
..+-+||-+|++.+..|+. .++|++||.|..+.|-+.... ....+. .||+|.+.++|.+||...++. ++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4567899999999877662 489999999998877654311 111222 399999999999999999987 899
Q ss_pred cEEEEEeccCC
Q 045707 232 RTIIVKLADTH 242 (901)
Q Consensus 232 ~~l~V~~a~~~ 242 (901)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998753
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.79 E-value=0.0011 Score=70.39 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=74.5
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeE--------eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE--------GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG 231 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g 231 (901)
....+|||-+++..++++++.++|.++|.|.. +.+-+|++|+..+|-|.|.|.+...|+.|+.-.++. ++|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34678999999999999999999999998843 567788999999999999999999999999999965 999
Q ss_pred cEEEEEeccCCC
Q 045707 232 RTIIVKLADTHK 243 (901)
Q Consensus 232 ~~l~V~~a~~~~ 243 (901)
.+|+|..|..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999988654
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.74 E-value=0.0013 Score=66.31 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC--------CCcceE----EEEEecchhhHHHHhcCC-ccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT--------GKSRGY----GFITYKHMESTQSALRAP-SKL 137 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~--------g~~kG~----aFV~F~~~~~A~~Al~~~-~~~ 137 (901)
...-||++|||+.++-.-|+++|+.||.|-.|.+-....+ |.++++ |+|+|.+...|..+...+ |.-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988776555 333332 789999999999988776 455
Q ss_pred ccccc
Q 045707 138 IDGRL 142 (901)
Q Consensus 138 l~g~~ 142 (901)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77764
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.004 Score=62.99 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=73.6
Q ss_pred HHHHhcCC-cccccccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCce
Q 045707 127 TQSALRAP-SKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESR 205 (901)
Q Consensus 127 A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~k 205 (901)
|..|-.++ +....|+.+.|.++. ...|||.||..-++.|.+.+.|+.||.|....+..|.. ++..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~-------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t 72 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM-------------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPT 72 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec-------------cceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-cccc
Confidence 45555555 566888999998873 25799999999999999999999999999988887754 8888
Q ss_pred eEEEEEeCCHHHHHHHHHcCC
Q 045707 206 GFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 206 G~aFV~F~~~e~A~~Al~~l~ 226 (901)
+-++|.|...-.|.+|+...+
T Consensus 73 ~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 73 REGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccchhhhhcchhHHHHHHHhc
Confidence 999999999999999999885
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0056 Score=68.14 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=64.2
Q ss_pred cccCCCCCHHHHH-HHHhhhcCCCcchhHHhhhccCCCCCCCeEEEeCCCcCCC------HHHHHHHHhhcCCeeEEEEE
Q 045707 33 RSLLDPLSKSQLV-DLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTT------SETLCAAFRVHGEIEEGAVI 105 (901)
Q Consensus 33 ~~l~~~~~ee~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t------e~~L~~~F~~~G~V~~v~i~ 105 (901)
.+...+++++++. +++.+. ....+.-...|+|.|+|.--. ..-|..+|+++|+|....++
T Consensus 31 ~~fvd~v~de~l~~Dll~k~-------------p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P 97 (698)
T KOG2314|consen 31 KGFVDDVDDEDLVGDLLEKR-------------PVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP 97 (698)
T ss_pred cccccccchhhhhhHHHhhC-------------cCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec
Confidence 3445566777766 444432 122334567899999985321 22356789999999999998
Q ss_pred ecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 106 YDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 106 ~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.+.. |.++||.|++|++..+|+.|++.+
T Consensus 98 ~~e~-ggtkG~lf~E~~~~~~A~~aVK~l 125 (698)
T KOG2314|consen 98 IDEE-GGTKGYLFVEYASMRDAKKAVKSL 125 (698)
T ss_pred cCcc-CCeeeEEEEEecChhhHHHHHHhc
Confidence 8874 459999999999999999999986
No 170
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.47 E-value=0.0055 Score=47.65 Aligned_cols=52 Identities=27% Similarity=0.510 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHH
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAV 222 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al 222 (901)
+.|-|.|.+.+..+. +...|..||+|..+.+... ..+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 457788888776654 5558889999999887632 238999999999999985
No 171
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.42 E-value=0.0044 Score=55.85 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=37.3
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.-|+|.|++..++.++|++.|++||.|..|.+.+.. .-|||.|.+.++|+.|++..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHH
Confidence 468899999999999999999999999988876542 36999999999999999874
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.34 E-value=0.003 Score=65.74 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=57.8
Q ss_pred CeEEEeCCCcCCCHHHH------HHHHhhcCCeeEEEEEecCCC-CCcceE--EEEEecchhhHHHHhcCC-cccccccc
Q 045707 73 RKLFVRGLAWNTTSETL------CAAFRVHGEIEEGAVIYDKAT-GKSRGY--GFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L------~~~F~~~G~V~~v~i~~~~~~-g~~kG~--aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
.-+||-+||+.+-.+++ .++|.+||.|..+.|-+.... ....+. .||+|.+.|+|..||.+- |..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999998877663 479999999986655433211 111232 399999999999999987 77899999
Q ss_pred ccccccc
Q 045707 143 AVCNLAC 149 (901)
Q Consensus 143 i~v~~a~ 149 (901)
++..+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9887764
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.21 E-value=0.013 Score=62.59 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=62.3
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCC---CCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDT---NESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
..|.|.||.+++|.++++.+|.-.|.|..+.+....+. ....-.|||.|.|...+..|...-|..+-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 47999999999999999999999999999998774332 23445799999999999999888887766666666544
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.20 E-value=0.011 Score=46.05 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=41.5
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHh
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL 131 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al 131 (901)
+.|-|.|.+.+..+. +...|..||+|..+.+.. ..-..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 567888988776654 556899999999877752 2348999999999999996
No 175
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.20 E-value=0.14 Score=58.75 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=55.7
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeE--eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEecc
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEE--GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~ 240 (901)
.|.+.|||..+...||+.+|+.. .|-+ |.|+ |...|-|||-|++.|+|.-|+.....+|.|..+++-++.
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHII-----GGe~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSS 75 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHII-----GGEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSS 75 (944)
T ss_pred EEEecCCcccccchHHHHhhccc-ccCCCceEEe-----cccccceEEEecccchhhhhhhhcccceecceEEEEecc
Confidence 36678999999999999999865 2222 2343 445689999999999999999998888999888776654
No 176
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=96.19 E-value=0.003 Score=42.69 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=13.7
Q ss_pred HHhhCCcceehhccccchHHHHHHHHhhh
Q 045707 645 IFLQFPQIEVRKFLLNLNQCLLFLFEIKM 673 (901)
Q Consensus 645 ~l~~~P~ll~~s~e~~l~p~~~fL~~~g~ 673 (901)
++.++|++|+++ +++|+++++||+++|+
T Consensus 3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 3 ILKKFPQILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence 344455555555 3455555555554443
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.021 Score=63.82 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=62.8
Q ss_pred cccceEEEcCCCCCCc------HHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c-CCc
Q 045707 161 LAQRKLYIGGLSPEVT------TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L-GGR 232 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~t------ee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i-~g~ 232 (901)
.-...|+|.|+|---. ..-|..+|+++|.|....++.+.++ .++||.|++|.+..+|+.|++.+||. + ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3467899999985332 2446788999999999999988774 49999999999999999999999976 4 456
Q ss_pred EEEEEec
Q 045707 233 TIIVKLA 239 (901)
Q Consensus 233 ~l~V~~a 239 (901)
+..|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7776543
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.95 E-value=0.017 Score=51.25 Aligned_cols=77 Identities=23% Similarity=0.254 Sum_probs=51.3
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEE-EEecC------CCCCcceEEEEEecchhhHHHHhcCCccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGA-VIYDK------ATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLA 143 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~-i~~~~------~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i 143 (901)
+.+-|-|=|.|+. ....+.+.|++||+|.+.. +.++. ........--|+|+++.+|.+|+..+|..+.|..+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4567889999988 6667889999999998764 11100 00112357899999999999999999999988644
Q ss_pred c-cccc
Q 045707 144 V-CNLA 148 (901)
Q Consensus 144 ~-v~~a 148 (901)
. |.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 3 4444
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.92 E-value=0.012 Score=69.34 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=89.9
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-chhH------------------------------Hhhh------ccC-C
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SIAE------------------------------EIKS------VAS-A 68 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~~~------------------------------~~~~------~~~-~ 68 (901)
..++|+|+++..+++.++...|...|.+.. .+.. .+.+ ..+ .
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~k 451 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPK 451 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccccc
Confidence 569999999999999999999999987721 0000 0000 111 3
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc--ccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG--RLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g--~~i~v 145 (901)
....+.+|+++|..++....|...|..||.|..|.+-. ..-||+|+|++...|+.|++.+ +.-++| +.+.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34567899999999999999999999999999766532 2359999999999999999987 555665 56777
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
.++..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 76643
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.73 E-value=0.017 Score=64.83 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=62.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhc-cCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC----cCCcEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFG-RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT----LGGRTI 234 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~-~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~----i~g~~l 234 (901)
...++.|||.||-.-+|.-+|+.++. ..|.|+..- .|+ -+..|||.|.+.++|.....+||+. -+++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHH--HHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 44578899999999999999999998 566666652 222 3457999999999999999999964 356999
Q ss_pred EEEeccCCC
Q 045707 235 IVKLADTHK 243 (901)
Q Consensus 235 ~V~~a~~~~ 243 (901)
.+.|+....
T Consensus 515 ~adf~~~de 523 (718)
T KOG2416|consen 515 IADFVRADE 523 (718)
T ss_pred EeeecchhH
Confidence 999987544
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.58 E-value=0.042 Score=48.74 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=51.5
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEee-eeccCC------CCCceeEEEEEeCCHHHHHHHHHcCCCCcCCc-E
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS-VAYDKD------TNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR-T 233 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~-i~~d~~------tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~-~ 233 (901)
..+.|.|-|.|+. ....+-+.|++||.|.+.. +.++.. ......+..|+|+++.+|.+|+......++|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3566889999988 5566788899999997764 111100 01122478999999999999999988778774 5
Q ss_pred EEEEecc
Q 045707 234 IIVKLAD 240 (901)
Q Consensus 234 l~V~~a~ 240 (901)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5688774
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.36 E-value=0.0083 Score=60.69 Aligned_cols=71 Identities=18% Similarity=0.357 Sum_probs=59.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCC--------CCceeE----EEEEeCCHHHHHHHHHcCCCC-c
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDT--------NESRGF----GFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~t--------g~~kG~----aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
...||+++||+..+..-|+++|+.||.|-.|.+.....+ |.++++ |-|+|.+...|..+...+|++ |
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 567999999999999999999999999999888776554 333333 579999999999999999976 8
Q ss_pred CCcE
Q 045707 230 GGRT 233 (901)
Q Consensus 230 ~g~~ 233 (901)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8753
No 183
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.87 E-value=0.1 Score=56.76 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=57.1
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeecc---CCC--CC--------ceeEEEEEeCCHHHHHHHHHcCC
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYD---KDT--NE--------SRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d---~~t--g~--------~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
...++|.+-|||.+-..+-|.++|+.+|.|..|+|... +.. |. .+-+|+|+|...+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46899999999999999999999999999999999876 222 22 24579999999999999999997
No 184
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.81 E-value=0.022 Score=61.77 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEec---CCCCC----------cceEEEEEecchhhHHHHhcCCcc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYD---KATGK----------SRGYGFITYKHMESTQSALRAPSK 136 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~---~~~g~----------~kG~aFV~F~~~~~A~~Al~~~~~ 136 (901)
-..++|.+-|||.+-.-+.|.++|+.+|.|..|+|..- +.+++ .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36899999999999999999999999999999999875 33322 245799999999999999998864
Q ss_pred c
Q 045707 137 L 137 (901)
Q Consensus 137 ~ 137 (901)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.84 E-value=0.14 Score=48.35 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=53.2
Q ss_pred cCCCCCCCeEEEeCCC------cCCCH---HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc
Q 045707 66 ASADPVHRKLFVRGLA------WNTTS---ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK 136 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp------~~~te---~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~ 136 (901)
.+..+...||.|.=.. ...++ .+|.+.|+.||+|.-+++..+ --+|+|.+.++|-+|+...|.
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCS
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCc
Confidence 3445667787777655 12332 366778899999887777654 489999999999999999999
Q ss_pred cccccccccccccc
Q 045707 137 LIDGRLAVCNLACE 150 (901)
Q Consensus 137 ~l~g~~i~v~~a~~ 150 (901)
.+.|+.+.|+...+
T Consensus 93 ~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QVNGRTLKIRLKTP 106 (146)
T ss_dssp EETTEEEEEEE---
T ss_pred EECCEEEEEEeCCc
Confidence 99999999987643
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.80 E-value=0.025 Score=57.62 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=51.8
Q ss_pred HHHHhhhc-cCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEeccCC
Q 045707 178 EVLLNFFG-RHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLADTH 242 (901)
Q Consensus 178 e~L~~~F~-~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~a~~~ 242 (901)
+++...++ +||+|+.+.|..+.. -.-+|-++|.|...++|++|++.+|+ ++.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44555555 999999987765543 46778899999999999999999995 599999999987643
No 187
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.71 E-value=0.26 Score=57.64 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=40.3
Q ss_pred HHHHhhcCccCchhhhHHhhchhhccc-ChhHHHHHHHHHHHc-------CCChhhhhhhhhcCceeeecCCchhHHHHH
Q 045707 490 YHVLCNYGVARNKIGKILKEAREVFQF-DVGVFQSKLHAYEML-------GLSQSFISKVIVCSPYLLIGDVNTEFVEVL 561 (901)
Q Consensus 490 ~~~L~~~g~~~~~i~~l~~~~~~i~~~-~~~~l~~~l~~L~~l-------G~~~~~i~~~v~~~P~lL~~~~~~~l~~~v 561 (901)
...|+.||..++.+..|..+..-+++. -.+.|..++.-.+.+ ++=..++++++.+.=.+ .-...+++++
T Consensus 491 ~kl~~~~~~e~~pme~Ls~edkFml~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~---k~sr~lr~Vl 567 (830)
T KOG1923|consen 491 VKLLREYERERSPMENLSEEDKFMLSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSL---KESRKLRPVL 567 (830)
T ss_pred HHHHHHhhhhcCchhhcccchhhhhhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhH---HHHHHHHHHH
Confidence 455677888888888877666544444 456666666555544 44444444444433222 2223455555
Q ss_pred HHHHhc
Q 045707 562 QILKSM 567 (901)
Q Consensus 562 ~~L~~l 567 (901)
+..-.+
T Consensus 568 eiILA~ 573 (830)
T KOG1923|consen 568 EIILAF 573 (830)
T ss_pred HHHHHh
Confidence 444443
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.53 E-value=0.13 Score=52.97 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHHHHhhhccCCceeEeeeeccCCCCC-ceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 177 TEVLLNFFGRHGEIEEGSVAYDKDTNE-SRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 177 ee~L~~~F~~fG~I~~v~i~~d~~tg~-~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
++++++.+++||.|..|.|..++..-. ..--.||+|+..++|.+|+-.+||. |+|+.+...|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 467889999999999998877653211 1123699999999999999999976 9999998887653
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.09 E-value=0.055 Score=58.35 Aligned_cols=79 Identities=30% Similarity=0.426 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC--cCCcEEEEEeccC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT--LGGRTIIVKLADT 241 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~--i~g~~l~V~~a~~ 241 (901)
+.+|++||.+.++.+++..+|...-.--+-.++ ...||+||.+.+...|.+|++.+++. +.|+++.+....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999754111111122 23479999999999999999999965 8999999999887
Q ss_pred CCCCCCC
Q 045707 242 HKGKPPQ 248 (901)
Q Consensus 242 ~~~~~~~ 248 (901)
++.+...
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 7655443
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.86 E-value=0.24 Score=45.90 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCCCCCCeEEEeCCCcCCC-HHH---HHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTT-SET---LCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRL 142 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~t-e~~---L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~ 142 (901)
..++.-.||.|+=|..++. .+| +....+.||+|.+|...- +-.|.|.|.|..+|-+|+.+.+....|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 3467788999987776663 344 445568899999988753 24699999999999999999887888888
Q ss_pred ccccccc
Q 045707 143 AVCNLAC 149 (901)
Q Consensus 143 i~v~~a~ 149 (901)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8887754
No 191
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=92.34 E-value=0.97 Score=45.30 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 045707 393 RKEAQAAMLE 402 (901)
Q Consensus 393 ~~~a~~~~~~ 402 (901)
..+|..-+++
T Consensus 274 ~~~~~~e~~~ 283 (341)
T KOG2893|consen 274 KAELKEEIVE 283 (341)
T ss_pred cchhhhhhhc
Confidence 3444444443
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.87 E-value=0.57 Score=37.48 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=43.9
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccC---CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRH---GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP 225 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~f---G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l 225 (901)
...|+|+|++ +.+.++|+.+|..| .....+..+-|. -|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4679999985 57888999999988 224567777664 4779999999999999865
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.84 E-value=0.36 Score=40.73 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
++...||-=.+|..+...||.++|+.||.|. |..+-|. .|||...+.+.|..|+...
T Consensus 6 P~RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 6 PSRDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp -SGCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred CCcceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 3444565555999999999999999999986 6666552 6999999999999987764
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.81 E-value=0.58 Score=39.51 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=41.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
....+|+ .|.++...+|.++|++||.|. |..+-|. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3455666 999999999999999999985 5555542 79999999999999988776
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.71 E-value=0.14 Score=52.12 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=56.1
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
..|||.||...+..+.+.+.|+.||+|....++.|. .++..|-++|.|...-.|.+|.+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 679999999999999999999999999988888874 7888899999999999999998875
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.67 E-value=0.73 Score=36.89 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=43.7
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVH----GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~----G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~ 133 (901)
..|+|+|+. +++.+|++.+|..| + ...|..+-|. .|=|.|.+.+.|.+|+..
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 479999995 68999999999999 5 4467777664 488999999999999875
No 197
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.34 E-value=0.06 Score=54.91 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=47.2
Q ss_pred HHHHHHh-hcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 88 TLCAAFR-VHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 88 ~L~~~F~-~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
|+...|+ +||+|++++|..+- ...-+|-+||.|..+++|++|+..+ |..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444445 89999998776653 3456789999999999999999987 56799999887764
No 198
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=1.8 Score=48.10 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=4.6
Q ss_pred EEEeCCHH
Q 045707 209 FVTYKTVE 216 (901)
Q Consensus 209 FV~F~~~e 216 (901)
.++|.+.+
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 36776544
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.19 E-value=0.5 Score=43.87 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=56.8
Q ss_pred ccccceEEEcCCCCCC----cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEE
Q 045707 160 DLAQRKLYIGGLSPEV----TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTII 235 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~----tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~ 235 (901)
++.-.+|.|+=|..+. +...+-...+.||+|.++...- +.-|.|.|.|..+|-+|+.+.+....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3445678887665555 3344455568999999987652 2369999999999999999999888899999
Q ss_pred EEecc
Q 045707 236 VKLAD 240 (901)
Q Consensus 236 V~~a~ 240 (901)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99854
No 200
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.07 E-value=0.97 Score=42.76 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=51.3
Q ss_pred cccceEEEcCCC-----CCCcH----HHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCC
Q 045707 161 LAQRKLYIGGLS-----PEVTT----EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG 231 (901)
Q Consensus 161 ~~~~~lfV~nLp-----~~~te----e~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g 231 (901)
+...+|.|.=.. ....+ .+|-+.|..||++.-+++..+ .-.|+|.+-++|.+|+......++|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 345666665444 12223 367788899999988887754 3579999999999999988878999
Q ss_pred cEEEEEeccCC
Q 045707 232 RTIIVKLADTH 242 (901)
Q Consensus 232 ~~l~V~~a~~~ 242 (901)
+.|.|+...+.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999987654
No 201
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=90.00 E-value=1.5 Score=43.50 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=80.9
Q ss_pred hhhhcCCCCCCCCCCCCCCccccc-chhhHhHhHHHHhhcCccCchhhhHHhhch----hhcccChhHHHHHHHHHHHcC
Q 045707 458 FFESLGLKPCEYSPFLPLNLMFLS-DDELLLENYHVLCNYGVARNKIGKILKEAR----EVFQFDVGVFQSKLHAYEMLG 532 (901)
Q Consensus 458 f~es~G~~~~~~~~~~~~~~~~l~-d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~----~i~~~~~~~l~~~l~~L~~lG 532 (901)
|+|..|+=+..... +..-.+.+ +|-.-+..+..|.+.|++-+.|..++.... .++..-...|...++-|+.
T Consensus 20 yYe~~GLl~p~~r~--~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~~~~~~L~~~~~~l~~ei~~L~~-- 95 (172)
T cd04790 20 YYERIGLLSPSARS--ESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGDDATDVLRRRLAELNREIQRLRQ-- 95 (172)
T ss_pred HHHHCCCCCCCccC--CCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH--
Confidence 57778876542211 12223444 555677889999999999999999876432 1222233444444444443
Q ss_pred CChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhH
Q 045707 533 LSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGL 609 (901)
Q Consensus 533 ~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~l 609 (901)
....+..++...+.. ......+....++.++.+|++..++.+.-.. ..-..+....+||.++|++.++|..|
T Consensus 96 -~~~~l~~ll~~~~~~-~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~---fe~~~p~~h~~~l~~~g~~~~~~~~i 167 (172)
T cd04790 96 -QQRAIATLLKQPTLL-KEQRLVTKEKWVAILKAAGMDEADMRRWHIE---FEKMEPEAHQEFLQSLGIPEDEIERI 167 (172)
T ss_pred -HHHHHHHHHHHHhhc-cccccCCHHHHHHHHHHcCCChHHHHHHHHH---HHHhCcHHHHHHHHHcCCCHHHHHHH
Confidence 224445544333333 2222233446677778888877765432110 01223456788888888888888655
No 202
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.20 E-value=2.4 Score=50.08 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=3.9
Q ss_pred EEeCCCcCCC
Q 045707 76 FVRGLAWNTT 85 (901)
Q Consensus 76 fV~nLp~~~t 85 (901)
|+--+|+..+
T Consensus 78 ~~~s~~~~fn 87 (830)
T KOG1923|consen 78 YVHSLPPFFN 87 (830)
T ss_pred ccccCccccC
Confidence 3333444333
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.10 E-value=0.17 Score=53.89 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=61.9
Q ss_pred ccceEEEcCCCCCCcHHHH---HhhhccCCceeEeeeeccCC--CCC-ceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEE
Q 045707 162 AQRKLYIGGLSPEVTTEVL---LNFFGRHGEIEEGSVAYDKD--TNE-SRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L---~~~F~~fG~I~~v~i~~d~~--tg~-~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l 234 (901)
..+-+||-+|+....++.+ .++|.+||.|..+.+..+.. .+. ...-++|+|...++|..||...++. .+|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3466889999988755544 36899999999998887662 111 1112799999999999999999987 888888
Q ss_pred EEEeccCC
Q 045707 235 IVKLADTH 242 (901)
Q Consensus 235 ~V~~a~~~ 242 (901)
+..++.++
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88887764
No 204
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.96 E-value=0.68 Score=48.01 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCc-ceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 86 SETLCAAFRVHGEIEEGAVIYDKATGKS-RGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 86 e~~L~~~F~~~G~V~~v~i~~~~~~g~~-kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
++++++-.++||.|..|.|...+..-.. .---||+|...++|.+|+-.+ |..++||.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4567788999999999998877532221 124799999999999997766 67789988776654
No 205
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=2.3 Score=47.30 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=6.0
Q ss_pred EEEEEecchhhHH
Q 045707 116 YGFITYKHMESTQ 128 (901)
Q Consensus 116 ~aFV~F~~~~~A~ 128 (901)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 4444555544443
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.77 E-value=2 Score=51.04 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=59.8
Q ss_pred EEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC---cCCcEEEEEeccCC
Q 045707 166 LYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT---LGGRTIIVKLADTH 242 (901)
Q Consensus 166 lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~---i~g~~l~V~~a~~~ 242 (901)
.++.|.+-+.+-..|..+|+.||.|.++..+++-+ .|.|.|.+.+.|..|+++++|. ..|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34445555677888999999999999999888764 7999999999999999999965 67889999998754
No 207
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=86.16 E-value=5.5 Score=43.51 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=11.7
Q ss_pred EEEcCCCCCCcHHHHHhhhccCCc
Q 045707 166 LYIGGLSPEVTTEVLLNFFGRHGE 189 (901)
Q Consensus 166 lfV~nLp~~~tee~L~~~F~~fG~ 189 (901)
+++-+++..-..+++-.-|+.-|.
T Consensus 219 f~~p~l~~~g~~d~~ss~~ed~g~ 242 (487)
T KOG4672|consen 219 FRVPGLKPPGPPDGLSSNFEDSGE 242 (487)
T ss_pred ccccCCCCCCCCccccCCCCCCCC
Confidence 444455554444455555544443
No 208
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.51 E-value=2 Score=48.66 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhh--cCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc---ccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRV--HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRLAVCN 146 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~--~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~i~v~ 146 (901)
.+-|.++-||.++-.|+++.+|+. |-++.+|..-.+. -=||+|++..||+.|.+.+. ++|.|+.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 445788999999999999999965 6688889887763 27999999999999988763 56888877655
Q ss_pred c
Q 045707 147 L 147 (901)
Q Consensus 147 ~ 147 (901)
.
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 4
No 209
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=85.45 E-value=15 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=11.0
Q ss_pred EEEEEeCCHHHHHHHHHcC
Q 045707 207 FGFVTYKTVEAAKKAVDDP 225 (901)
Q Consensus 207 ~aFV~F~~~e~A~~Al~~l 225 (901)
++|-.+-+.+....++...
T Consensus 1412 g~~d~~ld~e~l~~~~~~~ 1430 (1605)
T KOG0260|consen 1412 GCFDLMLDAEKLKKGIEIP 1430 (1605)
T ss_pred cceeeeccHHhhhccCccC
Confidence 3566666666666655544
No 210
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=84.00 E-value=18 Score=45.07 Aligned_cols=11 Identities=9% Similarity=-0.191 Sum_probs=5.4
Q ss_pred CCeeEEEEEec
Q 045707 97 GEIEEGAVIYD 107 (901)
Q Consensus 97 G~V~~v~i~~~ 107 (901)
+.|..|.|..+
T Consensus 1256 ~~i~kV~m~~~ 1266 (1605)
T KOG0260|consen 1256 PDIFKVYMSPT 1266 (1605)
T ss_pred cccceEEEeec
Confidence 34555555433
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=83.88 E-value=0.86 Score=39.34 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=47.4
Q ss_pred EEEEecchhhHHHHhcCCc--ccccccccccccccc--c-CCCcCCCCccccceEEEcCCCCCCcHHHHHhhhc
Q 045707 117 GFITYKHMESTQSALRAPS--KLIDGRLAVCNLACE--G-LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFG 185 (901)
Q Consensus 117 aFV~F~~~~~A~~Al~~~~--~~l~g~~i~v~~a~~--~-~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~ 185 (901)
|.|+|.++.-|++.++.-. -.+++..+.|....- . ..........+.++|.|.|+|...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999998753 236665555543321 1 1111122345678999999999999999998764
No 212
>PHA03247 large tegument protein UL36; Provisional
Probab=83.65 E-value=7.2 Score=52.40 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=11.1
Q ss_pred HHHHhhcCccCchhhhHHhhchhh
Q 045707 490 YHVLCNYGVARNKIGKILKEAREV 513 (901)
Q Consensus 490 ~~~L~~~g~~~~~i~~l~~~~~~i 513 (901)
-+|+++-|+ +-|..|+.-|..|
T Consensus 3100 RrY~r~Tg~--salAlLi~ACr~i 3121 (3151)
T PHA03247 3100 RRYVRSTGR--SALAVLIEACRRI 3121 (3151)
T ss_pred HHHHhhccH--HHHHHHHHHHHHH
Confidence 345555554 3355556555443
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.52 E-value=0.62 Score=51.60 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCeEEEeCCCcCC-CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 72 HRKLFVRGLAWNT-TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~-te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
.+.+-+.-.|... |-++|...|.+||+|..|.+-... --|.|+|.+..+|-.|....+..|+||.|++.|...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 4445555556655 578999999999999999886542 259999999999999999999999999999999865
Q ss_pred c
Q 045707 151 G 151 (901)
Q Consensus 151 ~ 151 (901)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 214
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=82.80 E-value=5.2 Score=43.99 Aligned_cols=244 Identities=14% Similarity=0.062 Sum_probs=133.9
Q ss_pred HhcCCChhHHhhHhhcCCCeEeeCCC-------chHHHHHHHHH--hcCCChHHHHHHHhhCCcceehhccccch-HHHH
Q 045707 597 RNLGCSDEQLGGLIRQHPGLLFEGSG-------SIALTMIGLLL--KFGSTRNELCSIFLQFPQIEVRKFLLNLN-QCLL 666 (901)
Q Consensus 597 ~~~G~s~~~i~~li~~~P~lL~~~~~-------~~l~p~~~fl~--~lG~s~~~i~~~l~~~P~ll~~s~e~~l~-p~~~ 666 (901)
..+|+..-.+...+.++|.|+..... -.|.+...-|. +..+-.+.-..++.+--.+|.++.++.|- .++.
T Consensus 45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~ 124 (335)
T PF11955_consen 45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA 124 (335)
T ss_pred HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence 46899778999999999999876441 12333333332 11111111122333333456666665543 6677
Q ss_pred HHH-HhhhchhHHHHHHHhCcccccccc------ccchHHHHHHcCCchhHHhHHHH-hCchHHHHhhhcccc----CCC
Q 045707 667 FLF-EIKMKVDEIGKILRCHFLLVGSCT------LKKTNTILAYLNVGKKRLCEYIQ-ENPLELKKLALGSRV----GRL 734 (901)
Q Consensus 667 fL~-~~g~~~~~i~~~l~~~P~il~~~~------~~~~~~~l~~lg~~~~~l~~ii~-~~P~~l~~~~~~~~~----~~~ 734 (901)
.++ ++|+.++-...++.+||..|.-.. .-.++.+=..|.++.-+...... ...... ..... ..+
T Consensus 125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~----~~~~~~~Fp~~f 200 (335)
T PF11955_consen 125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKRED----GFDRPLAFPVSF 200 (335)
T ss_pred HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhcccccccc----ccCCceeeeecC
Confidence 775 899999999999999999987322 11111111122222111111100 000000 00000 111
Q ss_pred Cch--hhHHHHHHHHhhhccC----------cccChHHHH-HHHHHHh---cc--cHH-HHHHHHHHH-HcCCCHHHHHH
Q 045707 735 PAE--KERSQLLRTKFLLDVG----------YVENSNEMA-KALKHFR---GR--GAE-LQERFDCLV-NAGLDRKDVCE 794 (901)
Q Consensus 735 ~~~--~~~~~~~k~~~L~~lG----------~~~~~~~~~-~a~~~~~---~~--~~~-l~~r~~~L~-~~G~s~~~v~~ 794 (901)
+.. -.....++++.+.++- ++.++..+. +++.+++ ++ ... ..+++..|. ++|++ ..+..
T Consensus 201 p~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~ 279 (335)
T PF11955_consen 201 PKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRR 279 (335)
T ss_pred CCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHH
Confidence 111 3346667777776664 444554443 4444433 22 222 778889999 99999 57999
Q ss_pred HHhhcCCccccCHHHHHHHHHHHHHhcCCCccccc-cCCcccccccchhHHHHHHHHHHHHcCC
Q 045707 795 MIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLV-SFPSYFNYTEERIKLRFLMYNWLKDEGW 857 (901)
Q Consensus 795 mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~-~~P~~L~ysleri~pR~~~~~~L~~~g~ 857 (901)
|+.+||.|+-.|.. -+.-.-||.+ +|.-.+++ .+|.+ .++-|+.- |+..|.
T Consensus 280 ~l~rHPgIFYvS~k-g~~~TVfLrE--AY~~~~Liek~Pl~------~~r~k~~~---Lm~~~~ 331 (335)
T PF11955_consen 280 LLLRHPGIFYVSLK-GKRHTVFLRE--AYDGGELIEKHPLV------VIREKFLE---LMQEGR 331 (335)
T ss_pred HHHhCCCeEEEecc-CCceEEEEee--ccCCCCCCCCCchH------HHHHHHHH---HHhhcc
Confidence 99999999999987 2333445666 56666644 55544 45556554 555554
No 215
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.54 E-value=11 Score=39.63 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=55.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCc-EEEEEeccC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGR-TIIVKLADT 241 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~-~l~V~~a~~ 241 (901)
..=|-|-++++... ..|-..|++||.|.+..... +| .+-+|.|.+.-+|++||......|+|. .|-|+.+.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 44567778877654 45677899999998765442 22 388999999999999999988778774 556777665
Q ss_pred CCCC
Q 045707 242 HKGK 245 (901)
Q Consensus 242 ~~~~ 245 (901)
+...
T Consensus 270 ksvi 273 (350)
T KOG4285|consen 270 KSVI 273 (350)
T ss_pred HHHh
Confidence 5433
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.47 E-value=0.66 Score=49.54 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=57.9
Q ss_pred CCeEEEeCCCcCCCHHHHH---HHHhhcCCeeEEEEEecCC--CCC-cceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLC---AAFRVHGEIEEGAVIYDKA--TGK-SRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~---~~F~~~G~V~~v~i~~~~~--~g~-~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
..-+||-+|+.....+.+. +.|.+||.|..|.+..+.. .+. .-.-++|+|...++|..||..- |..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3558999999887655553 5899999999888877652 111 1123899999999999999987 5668888877
Q ss_pred ccccc
Q 045707 145 CNLAC 149 (901)
Q Consensus 145 v~~a~ 149 (901)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 66554
No 217
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=81.11 E-value=4.8 Score=39.93 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCChHHHHHHHhhCC
Q 045707 627 TMIGLLLKFGSTRNELCSIFLQFP 650 (901)
Q Consensus 627 p~~~fl~~lG~s~~~i~~~l~~~P 650 (901)
..+..|+++|++-++|..++....
T Consensus 49 ~~I~~lr~~G~sL~eI~~ll~~~~ 72 (172)
T cd04790 49 EQICAYRSAGVSLEDIRSLLQQPG 72 (172)
T ss_pred HHHHHHHHcCCCHHHHHHHHhcCC
Confidence 466677788888888888776443
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=80.76 E-value=0.91 Score=50.35 Aligned_cols=70 Identities=26% Similarity=0.241 Sum_probs=55.8
Q ss_pred EcCCCCCC-cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccCCC
Q 045707 168 IGGLSPEV-TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHK 243 (901)
Q Consensus 168 V~nLp~~~-tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~~~ 243 (901)
+.-.+... |-++|...|.+||+|..|.+-.... .|.|+|.+..+|-.|-..-.-.|+|+.|+|.|-.+..
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 33334444 5688999999999999998866532 6899999999998887776667999999999987643
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=80.14 E-value=3.9 Score=39.49 Aligned_cols=119 Identities=12% Similarity=0.018 Sum_probs=78.1
Q ss_pred CeEEEeCCC--cCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 73 RKLFVRGLA--WNTTSETLCAAFRV-HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 73 ~~lfV~nLp--~~~te~~L~~~F~~-~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
+...||.+- ...+-..|.+.+.+ ++....+.+..- ..++..++|.+.++++++++...-.++|..+.+....
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 445555553 34566667766655 343323343321 2378999999999999999987777888877777665
Q ss_pred ccCCCcCCCCccccceEEEcCCCCCC-cHHHHHhhhccCCceeEeeee
Q 045707 150 EGLSGVSAVPDLAQRKLYIGGLSPEV-TTEVLLNFFGRHGEIEEGSVA 196 (901)
Q Consensus 150 ~~~~~~~~~~~~~~~~lfV~nLp~~~-tee~L~~~F~~fG~I~~v~i~ 196 (901)
+.............-=|.|.|||... +++.++++-+.+|.+..+...
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 33222111111122336778999885 888999999999999887654
No 220
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.45 E-value=3.3 Score=41.14 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=49.3
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhcc-CCce---eEeeeeccCC--CCCceeEEEEEeCCHHHHHHHHHcCCCC--cCC--
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGR-HGEI---EEGSVAYDKD--TNESRGFGFVTYKTVEAAKKAVDDPHKT--LGG-- 231 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~-fG~I---~~v~i~~d~~--tg~~kG~aFV~F~~~e~A~~Al~~l~~~--i~g-- 231 (901)
...+|.|++||++.|++++.+.++. ++.- ..+.-..... ....-..|||.|.+.+++..-...++|. ++.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3568999999999999999998877 6655 3333111111 1123346899999999999999999874 222
Q ss_pred --cEEEEEeccC
Q 045707 232 --RTIIVKLADT 241 (901)
Q Consensus 232 --~~l~V~~a~~ 241 (901)
....|.+|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 4556777654
No 221
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.34 E-value=2.7 Score=44.07 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=48.0
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGR 141 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~ 141 (901)
+.=|-|-++|+.-+. .|...|++||+|++.... .+--+-.|.|.+.-+|++||..+++.|+|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccc
Confidence 444666677766544 567789999999865433 223489999999999999999999888875
No 222
>PHA03247 large tegument protein UL36; Provisional
Probab=79.13 E-value=14 Score=49.76 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.5
Q ss_pred HHHHcC
Q 045707 527 AYEMLG 532 (901)
Q Consensus 527 ~L~~lG 532 (901)
|+++-|
T Consensus 3102 Y~r~Tg 3107 (3151)
T PHA03247 3102 YVRSTG 3107 (3151)
T ss_pred HHhhcc
Confidence 444444
No 223
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.10 E-value=8 Score=42.33 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=5.0
Q ss_pred hhhHHHHhcC
Q 045707 124 MESTQSALRA 133 (901)
Q Consensus 124 ~~~A~~Al~~ 133 (901)
+|+-.+||+.
T Consensus 166 eEdiaKAi~l 175 (462)
T KOG2199|consen 166 EEDIAKAIEL 175 (462)
T ss_pred HHHHHHHHHh
Confidence 3444555554
No 224
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.12 E-value=5.2 Score=39.96 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=44.2
Q ss_pred cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC--CC-cCCcEEEEEeccC
Q 045707 176 TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--KT-LGGRTIIVKLADT 241 (901)
Q Consensus 176 tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~--~~-i~g~~l~V~~a~~ 241 (901)
..+.|+++|..|+.+.....+..- +-..|.|.+.++|.+|...++ +. +.|..+++-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998887776543 357899999999999999999 66 9999999999854
No 225
>PHA03378 EBNA-3B; Provisional
Probab=76.85 E-value=24 Score=41.35 Aligned_cols=10 Identities=20% Similarity=0.219 Sum_probs=5.4
Q ss_pred ceEEEcCCCC
Q 045707 164 RKLYIGGLSP 173 (901)
Q Consensus 164 ~~lfV~nLp~ 173 (901)
-|||-..|+-
T Consensus 539 pcvy~~~l~i 548 (991)
T PHA03378 539 PCVYTEDLDI 548 (991)
T ss_pred CceeecccCc
Confidence 3566665543
No 226
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.61 E-value=25 Score=39.44 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=65.9
Q ss_pred HHHHHHHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHH
Q 045707 664 CLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQL 743 (901)
Q Consensus 664 ~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~ 743 (901)
.++||+.. =.-.+++.+|..+|.+| .++|..||-..-.+..+|..+|+.+........ -... ......
T Consensus 247 ~l~~Lr~~-pqf~~lR~~vq~NP~~L--------~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~~-~~~~--~~~~~~ 314 (378)
T TIGR00601 247 PLEFLRNQ-PQFQQLRQVVQQNPQLL--------PPLLQQIGQENPQLLQQISQHPEQFLQMLNEPV-GELA--GESDME 314 (378)
T ss_pred hHHHhhcC-HHHHHHHHHHHHCHHHH--------HHHHHHHHhhCHHHHHHHHHCHHHHHHHhcCcc-cccc--cccccc
Confidence 46676642 22356788999999986 678899999999999999999997766322110 0000 000000
Q ss_pred HHHHhhhccCcccChHHHHHHHH-HHhcccHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045707 744 LRTKFLLDVGYVENSNEMAKALK-HFRGRGAELQERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 744 ~k~~~L~~lG~~~~~~~~~~a~~-~~~~~~~~l~~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
. ..-|..+... .. ....+..+=++-++-|+.+||++..|.+..-.|
T Consensus 315 ~-----~~~~~~~~~~-----~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~AC 361 (378)
T TIGR00601 315 G-----GVGAIAEAGL-----PQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFAC 361 (378)
T ss_pred c-----ccccccccCc-----ccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 0 0000000000 00 012344555678889999999999998865544
No 227
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.64 E-value=2.5 Score=42.05 Aligned_cols=65 Identities=17% Similarity=0.063 Sum_probs=39.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhh-cCCe---eEEEEEecC-CCCC-cceEEEEEecchhhHHHHhcCC
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRV-HGEI---EEGAVIYDK-ATGK-SRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~V---~~v~i~~~~-~~g~-~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
....+|.|++||+++|++++.+.++. +|.- ..+.-.... ..+. .-.-|||.|.+.+++..-.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 45679999999999999999987766 5554 222211111 1111 2346999999999988877765
No 228
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.54 E-value=45 Score=41.63 Aligned_cols=7 Identities=14% Similarity=0.092 Sum_probs=2.6
Q ss_pred HhhhccC
Q 045707 181 LNFFGRH 187 (901)
Q Consensus 181 ~~~F~~f 187 (901)
...|..|
T Consensus 665 ~~~~~~y 671 (1049)
T KOG0307|consen 665 AKKFSEY 671 (1049)
T ss_pred HHHHHHH
Confidence 3333333
No 229
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.36 E-value=37 Score=41.19 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=22.5
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHHHHH
Q 045707 775 LQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKDVIK 811 (901)
Q Consensus 775 l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~ 811 (901)
..+|+.++. -.|++-+++. ..-||+|+.+..=-++
T Consensus 835 ~DdRi~~~~~v~sl~v~~~~--~~~YPrl~p~hdl~i~ 870 (1007)
T KOG1984|consen 835 TDDRIYQLQLVTSLSVEQLM--PFFYPRLLPFHDLDIE 870 (1007)
T ss_pred cchhHHHHHHhhcccHHhhh--hhhccceeeeeccccc
Confidence 557777777 6677777663 4557888766543333
No 230
>PHA03378 EBNA-3B; Provisional
Probab=73.67 E-value=26 Score=41.01 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=26.7
Q ss_pred ccccCCccccccccCCCCCCc---ccchhhHHHHHHHHHHHHhhcCCcCcCChhhh
Q 045707 366 FYFAQTPRLFSKSLPFSNENV---SKSPFVRKEAQAAMLEYLHLTRNLPFMDAEHM 418 (901)
Q Consensus 366 ~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~l~~~~~~~~~~a~~~ 418 (901)
--++|-|-||....-.+..-- +.+..+...+-.|=++|-.-.||.--++-+.|
T Consensus 864 ~~~vqapvf~pp~~~p~q~~~~~g~~~~~~ast~~qapt~~~~err~~gpm~~~~i 919 (991)
T PHA03378 864 DKIVQAPVFYPPVLQPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDI 919 (991)
T ss_pred cceeecccccCCccchHHhhhhcCCcccccccccccCCccccccccCCCCCChhhC
Confidence 345777777766554221110 33333344444556677665665554444433
No 231
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=73.02 E-value=25 Score=39.80 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=15.5
Q ss_pred ceEEEEEecchhhHHHHhcC
Q 045707 114 RGYGFITYKHMESTQSALRA 133 (901)
Q Consensus 114 kG~aFV~F~~~~~A~~Al~~ 133 (901)
.|++=..|.++++|++-.+.
T Consensus 115 dc~aGLnF~~E~EA~~F~k~ 134 (569)
T KOG3671|consen 115 DCQAGLNFASEEEAQKFRKK 134 (569)
T ss_pred cceeeecccCHHHHHHHHHH
Confidence 35677789999999887665
No 232
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=72.01 E-value=36 Score=38.59 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=16.4
Q ss_pred EEEEEecchhhHHHHhcCC
Q 045707 116 YGFITYKHMESTQSALRAP 134 (901)
Q Consensus 116 ~aFV~F~~~~~A~~Al~~~ 134 (901)
+|+|+=++.|..++|++..
T Consensus 206 H~~Isadt~eki~~Ai~vi 224 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVI 224 (554)
T ss_pred eEEEecchHHHHHHHHHHH
Confidence 7999999999999998763
No 233
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.10 E-value=45 Score=41.61 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.3
Q ss_pred EEeCCHHHHH
Q 045707 210 VTYKTVEAAK 219 (901)
Q Consensus 210 V~F~~~e~A~ 219 (901)
..|.+.-.++
T Consensus 669 ~~yanllasQ 678 (1049)
T KOG0307|consen 669 SEYANLLASQ 678 (1049)
T ss_pred HHHHHHHHhc
Confidence 3444444433
No 234
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=67.86 E-value=40 Score=30.64 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=47.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccC-CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRH-GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~f-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...+.+...|..++-++|..+.+.+ ..|..+++++|.. .++-.+.++|.+.++|..-....||.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 3445555566666777787666665 4577888988743 35667899999999999999999975
No 235
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.16 E-value=18 Score=29.49 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=40.0
Q ss_pred CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 174 EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 174 ~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
.++-++++.-+..|+-. +|..|+ | || ||.|.+.++|+++....+++ +.+..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----EE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46778999999999643 344443 2 55 89999999999999999976 5555544
No 236
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.70 E-value=24 Score=43.12 Aligned_cols=57 Identities=21% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccc-ccccccc
Q 045707 83 NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDG-RLAVCNL 147 (901)
Q Consensus 83 ~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g-~~i~v~~ 147 (901)
+.....+..-+..+|+|.-.+.. .|--.|.|...+.|-.|+...+..+.+ +.+.+..
T Consensus 874 ~a~~~~~~~~l~~~g~v~~~~~~--------~~~~w~~~~~~~~al~~~~~~~~~i~~~~~~~~~~ 931 (1080)
T KOG0566|consen 874 DAGKTELITKLPELGKVPLPRSD--------QGKMWITFGLGESALAALSLDGYKINPKRDINPFL 931 (1080)
T ss_pred cccccccccccccCCcccCCccc--------CCceEEecCCcchhhcccCccccccCCCCCCCccC
Confidence 33344455566677765543322 245789999999999998888777777 5555543
No 237
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=66.60 E-value=26 Score=31.80 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=42.5
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
..+-+...|..++-++|..+.+.+- .|..++|++|. ..++--+.+.|.+.++|+.-.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHh
Confidence 3444555555556667766666554 57888998874 336667999999999999988773
No 238
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.95 E-value=60 Score=39.54 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCccccc--cCCcccccc
Q 045707 809 VIKSKIDFLVNYLGYPLSFLV--SFPSYFNYT 838 (901)
Q Consensus 809 ~l~~k~~fL~~~mg~~~~~i~--~~P~~L~ys 838 (901)
+...|+..+....+++.+++. -||+++.+.
T Consensus 834 ~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~h 865 (1007)
T KOG1984|consen 834 RTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFH 865 (1007)
T ss_pred ccchhHHHHHHhhcccHHhhhhhhccceeeee
Confidence 456777778888888887754 478888776
No 239
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=65.40 E-value=81 Score=35.91 Aligned_cols=11 Identities=9% Similarity=0.428 Sum_probs=7.6
Q ss_pred HHHHHHHHHHh
Q 045707 395 EAQAAMLEYLH 405 (901)
Q Consensus 395 ~a~~~~~~~l~ 405 (901)
.+|.+|++=.+
T Consensus 493 dgR~~LmaqIR 503 (569)
T KOG3671|consen 493 DGRDALMAQIR 503 (569)
T ss_pred ccHHHHHHHHH
Confidence 36777777776
No 240
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=64.38 E-value=3.4 Score=47.28 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRV-HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK 136 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~ 136 (901)
+.+....|||.||=.-.|.-+|++++.+ .|.|.+..| |+ -|..|||.|.+.++|.....+++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhc
Confidence 4455678999999999999999999985 566776532 32 345699999999999999888643
No 241
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.31 E-value=44 Score=40.39 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.2
Q ss_pred cCCccccCHHHHHHHHHHHHHh
Q 045707 799 SPQILNMKKDVIKSKIDFLVNY 820 (901)
Q Consensus 799 ~P~iL~~s~e~l~~k~~fL~~~ 820 (901)
-|+.|+++.|.++..=-||++.
T Consensus 759 ~p~~L~ltae~l~~~GlyL~D~ 780 (887)
T KOG1985|consen 759 LPPPLNLTAELLSRRGLYLMDT 780 (887)
T ss_pred CCCccchHHHHhccCceEEEec
Confidence 4777888888887777777663
No 242
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=59.79 E-value=13 Score=48.65 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhcCCcCc
Q 045707 396 AQAAMLEYLHLTRNLPF 412 (901)
Q Consensus 396 a~~~~~~~l~~~~~~~~ 412 (901)
|+.-...=||-.+|-++
T Consensus 1741 A~~lfl~TLHDR~Geqy 1757 (2039)
T PRK15319 1741 ARNLQMQTLYDREGSQY 1757 (2039)
T ss_pred HHhhhcccHHHcCCccc
Confidence 33334444664445444
No 243
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=58.98 E-value=14 Score=35.13 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCcc
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVSPQIL 803 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~P~iL 803 (901)
+.+|++||.+-|++.+||.+++++.+.-=
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCcc
Confidence 88999999999999999999999977655
No 244
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=57.53 E-value=72 Score=37.25 Aligned_cols=11 Identities=27% Similarity=0.184 Sum_probs=4.9
Q ss_pred cceEEEcCCCC
Q 045707 163 QRKLYIGGLSP 173 (901)
Q Consensus 163 ~~~lfV~nLp~ 173 (901)
.+++.|-+...
T Consensus 275 eR~~~IiG~~d 285 (600)
T KOG1676|consen 275 ERPAQIIGTVD 285 (600)
T ss_pred cceeeeecCHH
Confidence 34455444433
No 245
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.49 E-value=89 Score=36.26 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEeCCCcC-CCHHHHHHHHhhc----CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccccc
Q 045707 67 SADPVHRKLFVRGLAWN-TTSETLCAAFRVH----GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLIDG 140 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~g 140 (901)
......++|-|-|+.|+ +..+||.-+|+.| |.|.+|.|.... -|+.| |+ ..+.|
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGkeR-------------------M~eEeV~G 228 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGKER-------------------MKEEEVHG 228 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhHHH-------------------hhhhcccC
Confidence 34556789999999986 6889999999887 689999987542 22211 21 12445
Q ss_pred cccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHH
Q 045707 141 RLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKK 220 (901)
Q Consensus 141 ~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 220 (901)
-++.+--....... .. .+.+..++-.++-+.+|+ +...+. -||.|+|.+.+.|..
T Consensus 229 P~~el~~~~e~~~~--------s~------sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 229 PPKELFKPVEEYKE--------SE------SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDSIETAKA 283 (650)
T ss_pred ChhhhccccccCcc--------cc------cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecCchHHHH
Confidence 43333221111000 00 111111122233344443 222111 289999999999999
Q ss_pred HHHcCCCC-cC--CcEEEEEecc
Q 045707 221 AVDDPHKT-LG--GRTIIVKLAD 240 (901)
Q Consensus 221 Al~~l~~~-i~--g~~l~V~~a~ 240 (901)
..+.++|. +. |..+.++|..
T Consensus 284 vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred HHHhcCcceeccccceeeeeecC
Confidence 99999987 53 5677777754
No 246
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=57.36 E-value=6 Score=46.11 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=61.7
Q ss_pred HhhhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-cccc
Q 045707 61 EIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLID 139 (901)
Q Consensus 61 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l~ 139 (901)
......+--+...+|||+|+...+..+-++.+...+|-|.+++... |||..|.+...+..|+..+. ..++
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3344455556778999999999999999999999999988776542 89999999999999988874 4466
Q ss_pred cccccccc
Q 045707 140 GRLAVCNL 147 (901)
Q Consensus 140 g~~i~v~~ 147 (901)
|..+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 76655543
No 247
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=57.05 E-value=8 Score=47.55 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=4.2
Q ss_pred cCCCCCCch
Q 045707 449 YHPINEFEP 457 (901)
Q Consensus 449 ~~~i~~~~~ 457 (901)
|.|....||
T Consensus 189 fppfdd~Ep 197 (2365)
T COG5178 189 FPPFDDLEP 197 (2365)
T ss_pred CCCCcccCC
Confidence 334444444
No 248
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=55.49 E-value=63 Score=34.92 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcc------------eehh--
Q 045707 591 RFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQI------------EVRK-- 656 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~l------------l~~s-- 656 (901)
..+.-+.++|...+++.+.++.. -++-...|+||. .|+..+.-.......|.. +.-.
T Consensus 137 ~~V~~Im~MGy~re~V~~AlRAa--------fNNPeRAVEYLl-~GIP~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~ 207 (340)
T KOG0011|consen 137 QTVQQIMEMGYDREEVERALRAA--------FNNPERAVEYLL-NGIPEDAEVPEPEKSTAAAAELPANAQPLDLFPQGA 207 (340)
T ss_pred HHHHHHHHhCccHHHHHHHHHHh--------hCChhhhHHHHh-cCCcccccCCcccCCcccCCCCCCCCChhhcCCccc
Confidence 35666678888888888877642 124456788887 566653111111111111 1111
Q ss_pred ccccchHHHHHHHHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHH
Q 045707 657 FLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKK 724 (901)
Q Consensus 657 ~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~ 724 (901)
++..-...++||+.. -.-.++..+|..+|.+| .++|..||-..-.+.+.|..+++.+..
T Consensus 208 ~~~~~~~~l~fLr~~-~qf~~lR~~iqqNP~ll--------~~~Lqqlg~~nP~L~q~Iq~nqe~Fl~ 266 (340)
T KOG0011|consen 208 VEASGGDPLEFLRNQ-PQFQQLRQMIQQNPELL--------HPLLQQLGKQNPQLLQLIQENQEAFLQ 266 (340)
T ss_pred hhhhcCCchhhhhcc-HHHHHHHHHHhhCHHHH--------HHHHHHHhhhCHHHHHHHHHHHHHHHH
Confidence 222333558888764 33457788999999996 778899999888999999999987765
No 249
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=55.22 E-value=19 Score=47.27 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=4.5
Q ss_pred CeEEEeCC
Q 045707 73 RKLFVRGL 80 (901)
Q Consensus 73 ~~lfV~nL 80 (901)
-+|.|.++
T Consensus 1348 g~l~i~~~ 1355 (2039)
T PRK15319 1348 GDLVVSDA 1355 (2039)
T ss_pred Cceeeccc
Confidence 45666654
No 250
>PRK14135 recX recombination regulator RecX; Provisional
Probab=54.43 E-value=1.7e+02 Score=30.96 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCChhHHhhHhhc
Q 045707 591 RFLRLFRNLGCSDEQLGGLIRQ 612 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~~ 612 (901)
.+.++|..-||+.+.|..++..
T Consensus 180 Ki~~~L~rkGf~~~~I~~~l~~ 201 (263)
T PRK14135 180 KIIQSLLTKGFSYEVIKAALEE 201 (263)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 3567777778877777777765
No 251
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=54.39 E-value=8.5 Score=44.91 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=59.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~ 238 (901)
-+...++||+|+...+..+-++.+...+|-|.++.... |||..|..+..+..|+..+.. .++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34578999999999999999999999999998765442 899999999999999999985 48887776655
No 252
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=53.97 E-value=22 Score=35.60 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=42.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc---cccccccccccccc
Q 045707 85 TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRLAVCNLAC 149 (901)
Q Consensus 85 te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~i~v~~a~ 149 (901)
..+.|+++|..|+.+......+. -+-..|.|.+.++|..|...+. ..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999887776643 3569999999999999988865 45888888888774
No 253
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=53.44 E-value=3.7e+02 Score=30.18 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=6.5
Q ss_pred ccchhhHHHHHHH
Q 045707 387 SKSPFVRKEAQAA 399 (901)
Q Consensus 387 ~~~~~~~~~a~~~ 399 (901)
.++++.+.++|+|
T Consensus 468 qLrKVeeqreqea 480 (518)
T KOG1830|consen 468 QLRKVEEQREQEA 480 (518)
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555544
No 254
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=50.86 E-value=32 Score=37.95 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=29.1
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCH
Q 045707 775 LQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKK 807 (901)
Q Consensus 775 l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~ 807 (901)
--.++..+. .+|+..+=...+|.+||..+....
T Consensus 119 pL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 119 PLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred cHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 557888898 999999999999999999998755
No 255
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=47.91 E-value=1e+02 Score=36.73 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=5.6
Q ss_pred CCeEEEeCC
Q 045707 72 HRKLFVRGL 80 (901)
Q Consensus 72 ~~~lfV~nL 80 (901)
.++|||+|=
T Consensus 673 ~tkVFiKnP 681 (1106)
T KOG0162|consen 673 VTKVFIKNP 681 (1106)
T ss_pred ceeEEecCh
Confidence 456777763
No 256
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=46.98 E-value=22 Score=33.77 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=23.4
Q ss_pred HhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccc
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLL 688 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~i 688 (901)
++.+|.|-.... ..+++||++-|++.+||..++.+.+.-
T Consensus 12 FL~~p~V~~sp~----~~k~~FL~sKGLt~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 12 FLQDPKVRNSPL----EKKIAFLESKGLTEEEIDEALGRAGSP 50 (136)
T ss_dssp HHCTTTCCCS-H----HHHHHHHHHCT--HHHHHHHHHHHT--
T ss_pred HhCCcccccCCH----HHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 445777655543 467788888888888888877665444
No 257
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=46.42 E-value=2.2e+02 Score=27.53 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHH
Q 045707 591 RFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFE 670 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~ 670 (901)
.+.+-|...|++.+.|..++.... ++...-....+. +. +...-..+. ..-.-.+.+|..
T Consensus 80 ~I~~~L~~kGi~~~~I~~~l~~~~-------~d~~e~a~~~~~----------k~---~~~~~~~~~-~~k~Ki~~~L~r 138 (157)
T PRK00117 80 RIRQELRQKGVDREIIEEALAELD-------IDWEELARELAR----------KK---FRRPLPDDA-KEKAKLVRFLAR 138 (157)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------ccHHHHHHHHHH----------HH---cCCCCCCCH-HHHHHHHHHHHH
Confidence 456677888888888888887653 112111111111 11 111111121 233456788888
Q ss_pred hhhchhHHHHHHHh
Q 045707 671 IKMKVDEIGKILRC 684 (901)
Q Consensus 671 ~g~~~~~i~~~l~~ 684 (901)
-|++.+.|.+++..
T Consensus 139 kGF~~~~I~~~l~~ 152 (157)
T PRK00117 139 RGFSMDVIQRVLRN 152 (157)
T ss_pred CCCCHHHHHHHHHh
Confidence 88888888887754
No 258
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=46.02 E-value=79 Score=35.68 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=8.1
Q ss_pred EEeCCHHHHHH
Q 045707 210 VTYKTVEAAKK 220 (901)
Q Consensus 210 V~F~~~e~A~~ 220 (901)
.+|.+.++|..
T Consensus 78 LnFqs~~DA~~ 88 (409)
T KOG4590|consen 78 LTFQSEQDARA 88 (409)
T ss_pred ccccChhhhhh
Confidence 67888887765
No 259
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.85 E-value=65 Score=34.87 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.3
Q ss_pred EEEEEeC
Q 045707 207 FGFVTYK 213 (901)
Q Consensus 207 ~aFV~F~ 213 (901)
+|||.=+
T Consensus 86 ~c~VnPT 92 (365)
T KOG2391|consen 86 ICYVNPT 92 (365)
T ss_pred eEEecCC
Confidence 4555443
No 260
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.49 E-value=1.3e+02 Score=32.83 Aligned_cols=7 Identities=0% Similarity=-0.448 Sum_probs=2.6
Q ss_pred eEeeeec
Q 045707 191 EEGSVAY 197 (901)
Q Consensus 191 ~~v~i~~ 197 (901)
..|+.+.
T Consensus 346 Cav~alh 352 (488)
T KOG3895|consen 346 CAVKALH 352 (488)
T ss_pred EEeeeee
Confidence 3333333
No 261
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=45.06 E-value=17 Score=44.90 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=8.5
Q ss_pred HHHHHhhhcCCCC
Q 045707 441 RLIARFLRYHPIN 453 (901)
Q Consensus 441 ~~~~r~l~~~~i~ 453 (901)
..|-|.+++|||.
T Consensus 319 n~i~rii~r~pi~ 331 (2365)
T COG5178 319 NGIVRIIRRPPID 331 (2365)
T ss_pred cceeeEEEeCCcC
Confidence 5566667777665
No 262
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.29 E-value=1e+02 Score=37.51 Aligned_cols=10 Identities=10% Similarity=-0.154 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q 045707 844 LRFLMYNWLK 853 (901)
Q Consensus 844 pR~~~~~~L~ 853 (901)
+-+++++||+
T Consensus 826 r~~~fI~~lR 835 (887)
T KOG1985|consen 826 RVRRFIKKLR 835 (887)
T ss_pred HHHHHHHHhh
Confidence 3445566666
No 263
>PRK14136 recX recombination regulator RecX; Provisional
Probab=44.15 E-value=3.8e+02 Score=29.11 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhc
Q 045707 774 ELQERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 774 ~l~~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
+.++.+.||..-||+.+.|..+|+.+
T Consensus 277 ek~K~iRfL~rRGFS~D~I~~vLk~~ 302 (309)
T PRK14136 277 ERAKQARFLAARGFSSATIVKLLKVG 302 (309)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 35566899999999999999888754
No 264
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=43.43 E-value=97 Score=30.70 Aligned_cols=86 Identities=19% Similarity=0.088 Sum_probs=44.5
Q ss_pred ccc-chhhHhHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHcC-CChhhhhhhhhcCceeeecCCchh
Q 045707 479 FLS-DDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLG-LSQSFISKVIVCSPYLLIGDVNTE 556 (901)
Q Consensus 479 ~l~-d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~lG-~~~~~i~~~v~~~P~lL~~~~~~~ 556 (901)
||| -+-+-.|.-.+|...|++. ..+..+|.+|...| ++.+..+....+.-.--..++
T Consensus 29 ~Ls~R~rse~ELr~kL~k~~~~~------------------~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g~G~--- 87 (174)
T COG2137 29 LLSRRDRSEKELRRKLAKKEFSE------------------EIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKGKGP--- 87 (174)
T ss_pred HHHHHHHHHHHHHHHHHhccCCH------------------HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcccCh---
Confidence 555 3444556666677776655 44566666666654 344444443333222222222
Q ss_pred HHHHHHHHHhcCCcchhhhhhhcccccCCH
Q 045707 557 FVEVLQILKSMEIESCWIEEHLLEQETFNW 586 (901)
Q Consensus 557 l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~ 586 (901)
..+.+-|...||+.+.|...|......+|
T Consensus 88 -~rl~qeL~qkGi~~~~Ie~aL~~~~~~~~ 116 (174)
T COG2137 88 -ARLKQELKQKGIDDEIIEEALELIDEEDE 116 (174)
T ss_pred -HHHHHHHHHcCCCHHHHHHHHhccchHHH
Confidence 13445566677777777776664333333
No 265
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.19 E-value=67 Score=36.12 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.++.|+|=.+|..+|-.||..|...+- .|.++++++|.. .++-...|.|.+.++|..-.+..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~ef 135 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEF 135 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHc
Confidence 388999999999999999999998765 589999999642 34556899999999999998874
No 266
>PRK14136 recX recombination regulator RecX; Provisional
Probab=42.68 E-value=1.3e+02 Score=32.44 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=9.5
Q ss_pred HHHHHhcCCChHHHHHHHh
Q 045707 629 IGLLLKFGSTRNELCSIFL 647 (901)
Q Consensus 629 ~~fl~~lG~s~~~i~~~l~ 647 (901)
+.||..-|++.+.|..+|.
T Consensus 282 iRfL~rRGFS~D~I~~vLk 300 (309)
T PRK14136 282 ARFLAARGFSSATIVKLLK 300 (309)
T ss_pred HHHHHHCCCCHHHHHHHHH
Confidence 4555555555555555443
No 267
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=42.56 E-value=12 Score=44.78 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
-..+.++.|.+-+.+..-|..+|++||.|.+++..++- -.|.|+|.+.+.|-.|++++
T Consensus 297 lqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl 354 (1007)
T KOG4574|consen 297 LQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDAL 354 (1007)
T ss_pred CcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhh
Confidence 34456777888889999999999999999999988875 36999999999999999984
No 268
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=42.09 E-value=36 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=8.6
Q ss_pred HHHHHHhcCCChhHHhhHhh
Q 045707 592 FLRLFRNLGCSDEQLGGLIR 611 (901)
Q Consensus 592 ~l~fL~~~G~s~~~i~~li~ 611 (901)
++.||..+|++.....+|+.
T Consensus 11 ~~~~L~~~gl~~~~a~kl~~ 30 (94)
T PF14490_consen 11 LMAFLQEYGLSPKLAMKLYK 30 (94)
T ss_dssp HHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 44455555555544444443
No 269
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=41.88 E-value=1.9e+02 Score=31.05 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=7.1
Q ss_pred cEEEEEeccCCCCC
Q 045707 232 RTIIVKLADTHKGK 245 (901)
Q Consensus 232 ~~l~V~~a~~~~~~ 245 (901)
.++.+-.|++...+
T Consensus 36 SKVVLVLADda~~K 49 (407)
T PF04625_consen 36 SKVVLVLADDANAK 49 (407)
T ss_pred ceeEEEeccccccc
Confidence 45555566554433
No 270
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.68 E-value=1.7e+02 Score=37.25 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=24.3
Q ss_pred ccccccchhHHHHHHHHHHHHcCCCCCCCCc------chhhcccHHHHHHHhcccCC
Q 045707 834 YFNYTEERIKLRFLMYNWLKDEGWIDGRLAS------STLIAYSNKTFMQQFVNRHP 884 (901)
Q Consensus 834 ~L~ysleri~pR~~~~~~L~~~g~~~~~~sl------~~~l~~sd~~F~~~~v~~~~ 884 (901)
+|.-+++.|+=-|.++ ||...++-+-.+++ ..++.|..+.-.++|-.-|.
T Consensus 947 LL~rsl~sl~~ah~lY-WlLk~~l~d~qfs~rYq~ll~aLl~~~gk~L~~ef~~Q~~ 1002 (1639)
T KOG0905|consen 947 LLSRSLVSLQFAHELY-WLLKDALDDSQFSLRYQNLLAALLDCCGKNLREEFKKQHK 1002 (1639)
T ss_pred HHHHHhcchHHHHHHH-HHHhhccccceeehHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4556666444444443 45555554333332 22455555555555555444
No 271
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=41.54 E-value=56 Score=26.71 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 83 NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 83 ~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
.++-++++.-+.+|+-. +|..|+ | | =||.|.+.++|++|.+.. +..+.+..+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 57889999999999742 444554 4 3 479999999999999886 444544433
No 272
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.90 E-value=94 Score=26.74 Aligned_cols=59 Identities=5% Similarity=0.022 Sum_probs=44.5
Q ss_pred eEEEeCCCcCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRV-HG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS 135 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~ 135 (901)
+-|+=..+.+++..++++.+++ || +|.+|....-+ . ...=|||++...++|.......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhhc
Confidence 4566667889999999999988 67 68888877654 2 22349999999999988755433
No 273
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=40.77 E-value=4e+02 Score=29.95 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.4
Q ss_pred HHHHhhhcCC
Q 045707 45 VDLLSRLGSQ 54 (901)
Q Consensus 45 ~~~~~~~~~~ 54 (901)
-++|.+++..
T Consensus 53 GELf~da~~f 62 (518)
T KOG1830|consen 53 GELFNDANNF 62 (518)
T ss_pred HHHHHHhhhh
Confidence 3444444444
No 274
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=40.39 E-value=66 Score=28.20 Aligned_cols=69 Identities=13% Similarity=0.222 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH-
Q 045707 555 TEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL- 633 (901)
Q Consensus 555 ~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~- 633 (901)
..+..++.+|...|++.....++.. .+| ++.-.+|..+|-.|..++..---.+++.+-
T Consensus 6 ~~~~~~~~~L~~~gl~~~~a~kl~~------------------~yg---~~ai~~l~~nPY~L~~~i~gi~F~~aD~iA~ 64 (94)
T PF14490_consen 6 RGLRELMAFLQEYGLSPKLAMKLYK------------------KYG---DDAIEILKENPYRLIEDIDGIGFKTADKIAL 64 (94)
T ss_dssp ---HHHHHHHHHTT--HHHHHHHHH------------------HH----TTHHHHHHH-STCCCB-SSSSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH------------------HHh---HHHHHHHHHChHHHHHHccCCCHHHHHHHHH
Confidence 3455666777777776665444433 223 144466777777776654433333444433
Q ss_pred hcCCChHHHHH
Q 045707 634 KFGSTRNELCS 644 (901)
Q Consensus 634 ~lG~s~~~i~~ 644 (901)
++|+..++-.+
T Consensus 65 ~~g~~~~d~~R 75 (94)
T PF14490_consen 65 KLGIEPDDPRR 75 (94)
T ss_dssp TTT--TT-HHH
T ss_pred HcCCCCCCHHH
Confidence 45555544444
No 275
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.76 E-value=77 Score=31.21 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=50.8
Q ss_pred ceEEEcCCCCCCc-----HHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCc-EEEE
Q 045707 164 RKLYIGGLSPEVT-----TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR-TIIV 236 (901)
Q Consensus 164 ~~lfV~nLp~~~t-----ee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~-~l~V 236 (901)
..+.+.+++.++. ......+|.+|.+....++++. .+..-|.|.+.+.|..|...++.+ +.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4466666666552 2334566666666655555543 346678999999999999999965 8887 8888
Q ss_pred EeccCCC
Q 045707 237 KLADTHK 243 (901)
Q Consensus 237 ~~a~~~~ 243 (901)
-++++..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8877543
No 276
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=39.33 E-value=34 Score=25.75 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCce
Q 045707 520 VFQSKLHAYEMLGLSQSFISKVIVCSPY 547 (901)
Q Consensus 520 ~l~~~l~~L~~lG~~~~~i~~~v~~~P~ 547 (901)
.+...+..|.+||+++.++.+++.....
T Consensus 2 ~~~d~~~AL~~LGy~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 2 ALEDALEALISLGYSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 4567789999999999999998876543
No 277
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.00 E-value=1.2e+02 Score=33.60 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHhhhcCCCcc---hhHHhhhcc---CCC-CCCCeEEEeCCCcCCCHHHHHHHHhhcCC-eeEEEEEec
Q 045707 36 LDPLSKSQLVDLLSRLGSQYPS---IAEEIKSVA---SAD-PVHRKLFVRGLAWNTTSETLCAAFRVHGE-IEEGAVIYD 107 (901)
Q Consensus 36 ~~~~~ee~l~~~~~~~~~~~~~---~~~~~~~~~---~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~~ 107 (901)
.+..+.+.|.+.....+..... ..-...... .++ .-...|=|-|+|.....+||...|+.||. =-+|+.+-|
T Consensus 348 ~e~~d~~lLqe~tenl~K~kiqeeK~dy~~s~~p~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd 427 (528)
T KOG4483|consen 348 WETADDDLLQERTENLLKDKIQEEKKDYSMSKAPPPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD 427 (528)
T ss_pred ccccCHHHHHHHHHHhhhhhhhchhhhcccccCCCCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec
Confidence 3445677777777666443211 111111111 111 22446889999999999999999999985 234445544
Q ss_pred CCCCCcceEEEEEecchhhHHHHhcCCccc
Q 045707 108 KATGKSRGYGFITYKHMESTQSALRAPSKL 137 (901)
Q Consensus 108 ~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~ 137 (901)
. .||-.|.+...|..|+..-+..
T Consensus 428 t-------halaVFss~~~AaeaLt~kh~~ 450 (528)
T KOG4483|consen 428 T-------HALAVFSSVNRAAEALTLKHDW 450 (528)
T ss_pred c-------eeEEeecchHHHHHHhhccCce
Confidence 3 5999999999999998874333
No 278
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=38.49 E-value=1.8e+02 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRV 798 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~ 798 (901)
.++-+.+|..-||+.+.|..+|..
T Consensus 95 ~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 95 KQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHhh
Confidence 677788888999999999887764
No 279
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.60 E-value=2.6e+02 Score=29.37 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.1
Q ss_pred cHHHHHhhhccCCceeEe
Q 045707 176 TTEVLLNFFGRHGEIEEG 193 (901)
Q Consensus 176 tee~L~~~F~~fG~I~~v 193 (901)
+..-+.++++.||+|..-
T Consensus 114 tA~~~~dILs~FGel~e~ 131 (338)
T KOG0917|consen 114 TASLLIDILSVFGELTEE 131 (338)
T ss_pred HHHHHHHHHHHhcCCChH
Confidence 556688899999998653
No 280
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=36.45 E-value=1.1e+02 Score=29.50 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=2.7
Q ss_pred eEEEcC
Q 045707 165 KLYIGG 170 (901)
Q Consensus 165 ~lfV~n 170 (901)
+.||+.
T Consensus 25 r~~ig~ 30 (177)
T KOG3168|consen 25 RTFIGQ 30 (177)
T ss_pred ceeech
Confidence 344543
No 281
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.40 E-value=1.7e+02 Score=35.34 Aligned_cols=8 Identities=0% Similarity=0.202 Sum_probs=3.7
Q ss_pred CeEEEeCC
Q 045707 73 RKLFVRGL 80 (901)
Q Consensus 73 ~~lfV~nL 80 (901)
+-|+|-..
T Consensus 121 kVIIIDEa 128 (624)
T PRK14959 121 KVFIIDEA 128 (624)
T ss_pred eEEEEECh
Confidence 34445444
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=36.32 E-value=4.3e+02 Score=31.88 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=7.3
Q ss_pred CCcEEEEEeccC
Q 045707 230 GGRTIIVKLADT 241 (901)
Q Consensus 230 ~g~~l~V~~a~~ 241 (901)
.|+.|+|...-.
T Consensus 78 ~Gr~i~iAvtv~ 89 (617)
T PRK14086 78 LGRPIRIAITVD 89 (617)
T ss_pred hCCCeEEEEEec
Confidence 577776655443
No 283
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=35.48 E-value=3.5e+02 Score=28.03 Aligned_cols=18 Identities=6% Similarity=0.161 Sum_probs=8.0
Q ss_pred HHHHHhhhccCCceeEee
Q 045707 177 TEVLLNFFGRHGEIEEGS 194 (901)
Q Consensus 177 ee~L~~~F~~fG~I~~v~ 194 (901)
.|.++.+-..|--+++++
T Consensus 66 ~D~fksF~MPf~~mkd~k 83 (261)
T KOG3294|consen 66 KDAFKSFMMPFNLMKDVK 83 (261)
T ss_pred Ccchhhhcchhhhhhhce
Confidence 344444444444444433
No 284
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=34.55 E-value=4.4e+02 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCCcCC
Q 045707 215 VEAAKKAVDDPHKTLGG 231 (901)
Q Consensus 215 ~e~A~~Al~~l~~~i~g 231 (901)
+|+|+++|........+
T Consensus 43 eeqAq~liD~~~~~~~~ 59 (165)
T KOG3454|consen 43 EEQAQKLIDETILRFIG 59 (165)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 67888888877644333
No 285
>PRK14134 recX recombination regulator RecX; Provisional
Probab=34.51 E-value=2.7e+02 Score=30.08 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCChhHHhhHhhcCCCeEeeC---CCc---hHHHHHHHHHhcCCChHHHHHHH--hhCCcceehhcc--c
Q 045707 590 LRFLRLFRNLGCSDEQLGGLIRQHPGLLFEG---SGS---IALTMIGLLLKFGSTRNELCSIF--LQFPQIEVRKFL--L 659 (901)
Q Consensus 590 ~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~---~~~---~l~p~~~fl~~lG~s~~~i~~~l--~~~P~ll~~s~e--~ 659 (901)
..+.+||..-||+.+.|..++... +... -++ ++.. ......-+....+ .++..+....-+ +
T Consensus 183 ~Kl~~~L~rrGFs~~~I~~vl~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~kr~~~~~~~e~d~~k 253 (283)
T PRK14134 183 KKLGPYLISRGYSSNIAEWILNEL---IKNEALYKDNNSQNIEN------NIKDENIEELHNLARKRYDIIIKSEDDKNK 253 (283)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH---HhHhhhhhhccccchhh------ccccChHHHHHHHHHHHHhhhhcccccHHH
Confidence 347899999999999999888762 1100 000 0110 0112211121111 233333222111 2
Q ss_pred cchHHHHHHHHhhhchhHHHHHHHh
Q 045707 660 NLNQCLLFLFEIKMKVDEIGKILRC 684 (901)
Q Consensus 660 ~l~p~~~fL~~~g~~~~~i~~~l~~ 684 (901)
.-.-.+.||.+-|++-+.|..+|..
T Consensus 254 ~~~Kl~~~L~rkGf~~e~I~~vl~~ 278 (283)
T PRK14134 254 IYRRLSNYLLRRGYSWEEVKKSLNE 278 (283)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788999999999999999864
No 286
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.93 E-value=1.4e+02 Score=25.29 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=43.2
Q ss_pred eEEEeCCCcCCCHHHHHHHHhh-cC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC
Q 045707 74 KLFVRGLAWNTTSETLCAAFRV-HG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA 133 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~-~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~ 133 (901)
+-|+=..+.+.|..++++.+++ || +|.+|..+.-+ . ..-=|||++...++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHh
Confidence 4667778899999999999987 67 67888776654 2 223499999998888776444
No 287
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=33.31 E-value=46 Score=24.99 Aligned_cols=34 Identities=12% Similarity=0.300 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHH
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKD 808 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e 808 (901)
+.+-++-|..+||+..++..++++...-=..+.+
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e 36 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVE 36 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH
Confidence 4566778889999999999888876442333444
No 288
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.14 E-value=78 Score=33.18 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhH
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMEST 127 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A 127 (901)
..+.||++||+.++.-.||+....+-|-+- ..|... | ++|-||+.|.+...+
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g-~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---G-HFGKCFLHFGNRKGV 380 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---c-CCcceeEecCCccCC
Confidence 356699999999999999999999887432 333322 2 567899999886554
No 289
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.91 E-value=57 Score=34.29 Aligned_cols=117 Identities=21% Similarity=0.369 Sum_probs=76.3
Q ss_pred HHHHHHHHHH-HcCC-CHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCcc-ccccCCc-----------------
Q 045707 774 ELQERFDCLV-NAGL-DRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLS-FLVSFPS----------------- 833 (901)
Q Consensus 774 ~l~~r~~~L~-~~G~-s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~-~i~~~P~----------------- 833 (901)
+|+.++-|-. ..|+ ..--|.+=|...|.+++.+.++++.|++-|.+-+|++++ +.-+||.
T Consensus 72 ~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred HHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 4777777776 6664 445567777889999999999999999999999999874 4444444
Q ss_pred ----ccccc-----cc-hhHHHH--HHHHH---H-----------------------HHcCCCCCCCCcchhhcccHHHH
Q 045707 834 ----YFNYT-----EE-RIKLRF--LMYNW---L-----------------------KDEGWIDGRLASSTLIAYSNKTF 875 (901)
Q Consensus 834 ----~L~ys-----le-ri~pR~--~~~~~---L-----------------------~~~g~~~~~~sl~~~l~~sd~~F 875 (901)
+|-.+ |+ -.+-.. .+.+. | +..|-+.+.-....+++.....|
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 44332 33 111111 11100 0 23444444556777888999999
Q ss_pred HHHhcccCCChHHHH
Q 045707 876 MQQFVNRHPKGPEVW 890 (901)
Q Consensus 876 ~~~~v~~~~~~~~~~ 890 (901)
++.|+..+...-..|
T Consensus 232 V~~f~g~~~~~~~~l 246 (309)
T COG1125 232 VEDFFGESERGLRLL 246 (309)
T ss_pred HHHHhcccccccccc
Confidence 999998875443333
No 290
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.67 E-value=59 Score=34.54 Aligned_cols=157 Identities=11% Similarity=0.137 Sum_probs=97.6
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecC-------CCCCcceEEEEEecchhhHHHHhcC----C---
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDK-------ATGKSRGYGFITYKHMESTQSALRA----P--- 134 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~-------~~g~~kG~aFV~F~~~~~A~~Al~~----~--- 134 (901)
....|.|.+.|+..+++-..+..-|-+||+|++|.++.+. ...+......+.|-+.+.+-.-... +
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3446779999999999999999999999999999999865 1123446788999998887443221 1
Q ss_pred cccccccccccccccccCCC--------c------------CCCCccccceEEEcCCCCCC-cHHHHHhhh---ccCC--
Q 045707 135 SKLIDGRLAVCNLACEGLSG--------V------------SAVPDLAQRKLYIGGLSPEV-TTEVLLNFF---GRHG-- 188 (901)
Q Consensus 135 ~~~l~g~~i~v~~a~~~~~~--------~------------~~~~~~~~~~lfV~nLp~~~-tee~L~~~F---~~fG-- 188 (901)
.+.+....+.+.+..-.... . ........+.|.|. +...+ +++-+.+.+ ..-+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 23355555555443310000 0 00112234566665 33334 333333332 1112
Q ss_pred --ceeEeeeeccCC--CCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 189 --EIEEGSVAYDKD--TNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 189 --~I~~v~i~~d~~--tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
.++++.++...+ ..-++.||.++|-+..-|...+..+.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 367777765432 24567799999999999999988776
No 291
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.37 E-value=4e+02 Score=28.10 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=4.4
Q ss_pred HHHHHhhcCCe
Q 045707 89 LCAAFRVHGEI 99 (901)
Q Consensus 89 L~~~F~~~G~V 99 (901)
|.++.+.||+|
T Consensus 118 ~~dILs~FGel 128 (338)
T KOG0917|consen 118 LIDILSVFGEL 128 (338)
T ss_pred HHHHHHHhcCC
Confidence 33334444443
No 292
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=31.11 E-value=72 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
++++-|+++||+++++...+..+
T Consensus 3 ~~v~~L~~mGf~~~~~~~AL~~~ 25 (38)
T cd00194 3 EKLEQLLEMGFSREEARKALRAT 25 (38)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 56777888899988888766654
No 293
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=30.66 E-value=71 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
+.++-|+++||+++++.+.++.+
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~ 26 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRAC 26 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 56677788888888887776654
No 294
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=30.64 E-value=48 Score=29.57 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=31.4
Q ss_pred CchhhhhcCCCCCCCC--CCCCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHcC
Q 045707 455 FEPFFESLGLKPCEYS--PFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLG 532 (901)
Q Consensus 455 ~~~f~es~G~~~~~~~--~~~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~lG 532 (901)
|+.|++++|++..... ...+ +.......+...++..+.....++--.--+-...+...+..++.|+.+|
T Consensus 22 f~~~L~~~Gi~~~~~~~~~~~~---------~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g 92 (106)
T PF14518_consen 22 FRRFLRALGIDDEPGAYRDPYP---------PETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRLG 92 (106)
T ss_dssp HHHHHHHTT-----TT-----H---------HHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCccccccccCC---------HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHcC
Confidence 5678899999987442 1111 1112222222333333333233321111122224566777888999999
Q ss_pred CChhhhh
Q 045707 533 LSQSFIS 539 (901)
Q Consensus 533 ~~~~~i~ 539 (901)
++..++.
T Consensus 93 ~~~~~~~ 99 (106)
T PF14518_consen 93 LDEEDLE 99 (106)
T ss_dssp --TTTTH
T ss_pred CCccccc
Confidence 8876643
No 295
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=30.33 E-value=5e+02 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCChhHHhhHhh
Q 045707 591 RFLRLFRNLGCSDEQLGGLIR 611 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~ 611 (901)
.+.++|..-||+.+.|.+++.
T Consensus 131 Ki~~~L~rkGF~~~~I~~~l~ 151 (157)
T PRK00117 131 KLVRFLARRGFSMDVIQRVLR 151 (157)
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 355555566666655555554
No 296
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=29.86 E-value=2.3e+02 Score=32.61 Aligned_cols=9 Identities=0% Similarity=-0.381 Sum_probs=5.8
Q ss_pred eEEEEEeCC
Q 045707 206 GFGFVTYKT 214 (901)
Q Consensus 206 G~aFV~F~~ 214 (901)
.-|.+.+.+
T Consensus 442 r~ap~~~s~ 450 (694)
T KOG4264|consen 442 RRAPSHQSD 450 (694)
T ss_pred ccccccccc
Confidence 356777765
No 297
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=29.84 E-value=80 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhc
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
++++-|..+||+++++...+.++
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~ 25 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAA 25 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 56777888888888888776665
No 298
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.26 E-value=3.2e+02 Score=33.09 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=21.1
Q ss_pred EEEEEeCCHHHHHHHHHcCC------CCcCCcEEEEEeccC
Q 045707 207 FGFVTYKTVEAAKKAVDDPH------KTLGGRTIIVKLADT 241 (901)
Q Consensus 207 ~aFV~F~~~e~A~~Al~~l~------~~i~g~~l~V~~a~~ 241 (901)
.|.|.| +..-..++..... ..+.|+.++|.+...
T Consensus 474 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (620)
T PRK14948 474 RAVIAV-SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQ 513 (620)
T ss_pred EEEEEe-CHHHHHHHHHhHHHHHHHHHHHhCCCeEEEEEec
Confidence 577888 5555555433322 236788888888654
No 299
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.22 E-value=39 Score=33.02 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=43.8
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCC--CcceEEEEEecchhhHHHHhcCCccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG--KSRGYGFITYKHMESTQSALRAPSKLIDGRLA 143 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g--~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i 143 (901)
.+++|.+ +.+..-++|.++-+ |.+..+.+-+.. .+ ..+|--||+|.+.++|...++.......-..+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 4677777 33333444444444 788887765543 33 57899999999999999988875444333333
No 300
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=28.56 E-value=7.6e+02 Score=26.71 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCcCcCChhhhhcCChHHHHHHHHhccCchhHHHHHHHhhhcCCCCCCchhhhhcCC-CCCCCCCC
Q 045707 394 KEAQAAMLEYLHLTRNLPFMDAEHMSKNSPHFVEKLIERFENQLDVQRLIARFLRYHPINEFEPFFESLGL-KPCEYSPF 472 (901)
Q Consensus 394 ~~a~~~~~~~l~~~~~~~~~~a~~~~~~s~~~~~~l~~~~~~~~~~~~~~~r~l~~~~i~~~~~f~es~G~-~~~~~~~~ 472 (901)
...-+.+.+||..+||++. +....-++-|.+|.. |++.-|+ +...+.
T Consensus 6 ~~~i~~fL~~l~~Er~ls~---------------------nTl~sYrrDL~~f~~---------~L~~~~~~~l~~~~-- 53 (300)
T COG4974 6 EALIEQFLEYLWIERGLSA---------------------NTLSSYRRDLEDFRE---------WLEERGITDLADAT-- 53 (300)
T ss_pred HHHHHHHHHHHHHHhhhhh---------------------hhHHHHHHHHHHHHH---------HHHhcCCCChhhcC--
Q ss_pred CCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHcCCChhhhhhhhhcCceeeecC
Q 045707 473 LPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGD 552 (901)
Q Consensus 473 ~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~ 552 (901)
...+.+-+.+|...|++...+.+.+ ..|++--+||..-|+...+-...+..--.=-...
T Consensus 54 ----------~~di~~yl~~l~~~g~s~~S~aR~l-----------salR~fy~fl~~E~~~~~dP~~~l~~PK~~~~LP 112 (300)
T COG4974 54 ----------EADIREYLTELAEQGLSATSIARAL-----------SALRSFYQFLIREGLREDDPTRLLDSPKLPKRLP 112 (300)
T ss_pred ----------HHHHHHHHHHHHhCCcChhhHHHHH-----------HHHHHHHHHHHHCCCcccCchhhhcCCCCCCcCC
Q ss_pred CchhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHH--HHHHHHhcCCChhHHhhH
Q 045707 553 VNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLR--FLRLFRNLGCSDEQLGGL 609 (901)
Q Consensus 553 ~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~--~l~fL~~~G~s~~~i~~l 609 (901)
-- +..+++..+|.+...+....+.. .+++|..-|+--+++..+
T Consensus 113 k~--------------Ls~~eve~Ll~~~~~~~p~~LRdrAmlELLYATGlRVSElv~L 157 (300)
T COG4974 113 KF--------------LSEEEVEALLEAPDEDTPLGLRDRAMLELLYATGLRVSELVGL 157 (300)
T ss_pred cc--------------cCHHHHHHHHhCCCCCCcHhHHHHHHHHHHHHcCChHHHHhcC
No 301
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=28.30 E-value=72 Score=29.32 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=29.6
Q ss_pred eEEEeCCCcC---------CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhH
Q 045707 74 KLFVRGLAWN---------TTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMEST 127 (901)
Q Consensus 74 ~lfV~nLp~~---------~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A 127 (901)
++.|-|++.. .+.++|++.|+.|..+. ++...++. .+.|++.|.|.+.-+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHH
Confidence 3456666543 35588999999998875 77777752 4779999999987654
No 302
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=28.16 E-value=2.1e+02 Score=34.85 Aligned_cols=9 Identities=0% Similarity=0.327 Sum_probs=3.6
Q ss_pred EEecchhhH
Q 045707 119 ITYKHMEST 127 (901)
Q Consensus 119 V~F~~~~~A 127 (901)
+.|.+....
T Consensus 297 ~r~~~~~~~ 305 (756)
T KOG2375|consen 297 VRFENEDFN 305 (756)
T ss_pred hhhhhhhhh
Confidence 344444333
No 303
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.90 E-value=3.1e+02 Score=27.43 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCCC
Q 045707 294 SYTSPNTAPVPYPTQ 308 (901)
Q Consensus 294 ~~~~p~~~~~p~~~~ 308 (901)
.++++..+.+||+++
T Consensus 62 MWG~~q~mmPPYGtP 76 (189)
T PF07777_consen 62 MWGPQQPMMPPYGTP 76 (189)
T ss_pred ccCCCccccCCCCCC
Confidence 334333444444443
No 304
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.59 E-value=1.6e+02 Score=31.00 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=34.9
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCH
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~ 215 (901)
.-|+++||+.++.-.+|+..+.+-|.+- ..+.. ....|-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 4599999999999999999998776542 22222 23557899999764
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.51 E-value=1.3e+02 Score=34.00 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=54.4
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccC-CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRH-GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~f-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
++.|+|-.+|...|-.+|-.+...| -.|.++++++|.. .++=.+.|+|.+.++|..-.+.+||.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCC
Confidence 7889999999999999999998765 5688999999643 34446899999999999999999965
No 306
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=27.43 E-value=2.2e+02 Score=27.73 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=18.1
Q ss_pred CeEeeCCCchHHHHHHHHHhcCCC
Q 045707 615 GLLFEGSGSIALTMIGLLLKFGST 638 (901)
Q Consensus 615 ~lL~~~~~~~l~p~~~fl~~lG~s 638 (901)
.++.+++++.+...++.++.-|+|
T Consensus 74 pvv~v~pdDsi~~vv~lM~~~g~S 97 (187)
T COG3620 74 PVVSVSPDDSISDVVNLMRDKGIS 97 (187)
T ss_pred CeeEECchhhHHHHHHHHHHcCCc
Confidence 355677777888888888887775
No 307
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.07 E-value=5.8e+02 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHh
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEI 671 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~ 671 (901)
.|..+.|.+- |..++.|++= --|-+=|.++|. ..+-|.+.|+++-
T Consensus 156 ~PkfI~YAtY--LSEKIGYwRY-----ItIyRHLe~~Pe-------~r~~PIF~~FE~W 200 (351)
T CHL00185 156 SPKFIFYATY--LSEKIGYWRY-----ITIYRHLEKNPE-------YRIYPIFKFFESW 200 (351)
T ss_pred cccceehhhH--HHhhhhhhHH-----hHHHHHHHhCcc-------cccchHHHHHHHH
Confidence 4666666554 6777777762 244555555553 4666777777664
No 308
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.69 E-value=1.3e+02 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCeeEEEE
Q 045707 87 ETLCAAFRVHGEIEEGAV 104 (901)
Q Consensus 87 ~~L~~~F~~~G~V~~v~i 104 (901)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999999875443
No 309
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=26.44 E-value=1.5e+02 Score=36.67 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCChhHHh-----------hHhhcCCCeEeeC
Q 045707 591 RFLRLFRNLGCSDEQLG-----------GLIRQHPGLLFEG 620 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~-----------~li~~~P~lL~~~ 620 (901)
.++.||.++|++..... .+|..+|..|.++
T Consensus 145 ~~~~~L~~~gi~~~~a~ki~~~yg~~~~~~i~~nPY~L~~~ 185 (720)
T TIGR01448 145 RLLAGLQGLGIGIKLAQRIYKFYQADTLDRVEKDPYLLAED 185 (720)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhCchhhhhh
Confidence 34555555555554433 4455666665554
No 310
>PHA02591 hypothetical protein; Provisional
Probab=26.27 E-value=45 Score=27.87 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=39.4
Q ss_pred HhhcCccCchhhhHHhhch-hhcccChhHHHHHHHHHHHcCCChhhhhhhh
Q 045707 493 LCNYGVARNKIGKILKEAR-EVFQFDVGVFQSKLHAYEMLGLSQSFISKVI 542 (901)
Q Consensus 493 L~~~g~~~~~i~~l~~~~~-~i~~~~~~~l~~~l~~L~~lG~~~~~i~~~v 542 (901)
||-+-+.+.+|.+++.--. +-|--+.+++.+...-|.++|++..+|+..+
T Consensus 19 ~~~~~~~~~~m~k~vqv~~~ryfi~~~dd~~~vA~eL~eqGlSqeqIA~~L 69 (83)
T PHA02591 19 LCICYIGEKKMQKVVQVGQTRYFVESEDDLISVTHELARKGFTVEKIASLL 69 (83)
T ss_pred eEEEEhhhHhHHHhheeCCEEEEEeccchHHHHHHHHHHcCCCHHHHHHHh
Confidence 6777788888888864332 4555588899999999999999999998873
No 311
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=26.12 E-value=3.7e+02 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=13.4
Q ss_pred CCcHHHHHhhhc---------cCCceeEeeee
Q 045707 174 EVTTEVLLNFFG---------RHGEIEEGSVA 196 (901)
Q Consensus 174 ~~tee~L~~~F~---------~fG~I~~v~i~ 196 (901)
.++..+++..|. +||.+.+-.++
T Consensus 82 ~~p~~~lr~aF~~idla~G~~R~GPLanG~~~ 113 (582)
T PF03276_consen 82 SAPWNELRRAFDNIDLAEGPLRFGPLANGNYI 113 (582)
T ss_pred cCcHHHHHHHHhcCCCCCCccccCccCCCccc
Confidence 456667777774 55666554443
No 312
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=26.00 E-value=96 Score=25.77 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCcHHHHHhhhccCCc-----eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 173 PEVTTEVLLNFFGRHGE-----IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 173 ~~~tee~L~~~F~~fG~-----I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
..++..+|-.++...+. |-.+.+..+ |+||+-.. +.|..+++.+++. +.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677777777765543 445555432 78888754 4788888888855 99999999865
No 313
>PRK09875 putative hydrolase; Provisional
Probab=25.74 E-value=4e+02 Score=28.89 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhhchhHHHHHHHhCcc
Q 045707 662 NQCLLFLFEIKMKVDEIGKILRCHFL 687 (901)
Q Consensus 662 ~p~~~fL~~~g~~~~~i~~~l~~~P~ 687 (901)
...+-.|++.|++.++|.+++..||.
T Consensus 263 ~~~ip~L~~~Gvse~~I~~m~~~NP~ 288 (292)
T PRK09875 263 TTFIPQLRQSGFSQADVDVMLRENPS 288 (292)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCHH
Confidence 33444555556666666666666554
No 314
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=25.21 E-value=6.8e+02 Score=27.19 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=28.4
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHh
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEI 671 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~ 671 (901)
.|..+.|.+- |..++.|++= --|-+=|.++|. ..+-|.+.|+++-
T Consensus 150 ~PkfI~YAtY--LSEKIGYwRY-----ItIyRHLe~~Pe-------~r~~PIF~~Fe~W 194 (337)
T TIGR02029 150 RPKFIYYATY--LSEKIGYWRY-----ITIYRHLEENPE-------NQFYPIFKYFESW 194 (337)
T ss_pred ccceeehhhH--hHhhhhhHHH-----HHHHHHHHhCcc-------cccchHHHHHHHH
Confidence 4666666654 7777777762 245555555654 5667777777764
No 315
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.76 E-value=2.9e+02 Score=33.30 Aligned_cols=16 Identities=0% Similarity=0.063 Sum_probs=7.8
Q ss_pred CCeEEEeCCCcCCCHHH
Q 045707 72 HRKLFVRGLAWNTTSET 88 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~ 88 (901)
.+-|+|.+.. .++.+.
T Consensus 121 ~kVvIIDEa~-~L~~~a 136 (585)
T PRK14950 121 YKVYIIDEVH-MLSTAA 136 (585)
T ss_pred eEEEEEeChH-hCCHHH
Confidence 3455666643 444433
No 316
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=24.64 E-value=1.7e+02 Score=26.43 Aligned_cols=116 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred CCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccccCCCcCCCC
Q 045707 80 LAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVP 159 (901)
Q Consensus 80 Lp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~~~~~~~~~~ 159 (901)
||+-++ .|-++|+.=|+|.+|.-+..- . .++|..-+...=..++|. |.+........ ..-..
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqy-------------p-dndal~~~~G~lE~vDg~-i~IGs~q~~~s-V~i~g 72 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQY-------------P-DNDALLYVHGTLEQVDGN-IRIGSGQTPAS-VRIQG 72 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEecc-------------C-CchhhheeeeehhhccCc-EEEccCCCccc-EEEec
Confidence 566654 478999999999987655332 1 111111111111124554 44443321100 00001
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhc---cCCceeEeeeeccCCCCCceeEEEEEeCCH
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFG---RHGEIEEGSVAYDKDTNESRGFGFVTYKTV 215 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~---~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~ 215 (901)
.+.++++ .=-|+.+|..+++++|+ .|-.|++-.+.+|--...+-..||.-|...
T Consensus 73 TPsgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 73 TPSGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1112221 11367789999999996 466676666766632223344688888655
No 317
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=24.61 E-value=3e+02 Score=31.71 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=3.5
Q ss_pred HHHhhcC
Q 045707 91 AAFRVHG 97 (901)
Q Consensus 91 ~~F~~~G 97 (901)
++...||
T Consensus 228 eLv~~YG 234 (694)
T KOG4264|consen 228 ELVTKYG 234 (694)
T ss_pred HHHHHhC
Confidence 3445555
No 318
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.17 E-value=1.7e+02 Score=31.53 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCccccccCCcccccccchhHHHHHHHHHHHHcCCCCCCCCcchhhcccHHHHHHHhcccCC
Q 045707 808 DVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWIDGRLASSTLIAYSNKTFMQQFVNRHP 884 (901)
Q Consensus 808 e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~~~~~~L~~~g~~~~~~sl~~~l~~sd~~F~~~~v~~~~ 884 (901)
+-++.+++.+.+ .|++.+.|+--|- ++|.- ....-+.+++-|..-. .+.+..++..|.|.|+..+...-|
T Consensus 163 ~~l~~~i~~a~~-~GI~~~~IilDPG-iGF~k-~~~~n~~ll~~l~~l~----~lg~Pilvg~SRKsfig~~~~~~~ 232 (282)
T PRK11613 163 RYFIEQIARCEA-AGIAKEKLLLDPG-FGFGK-NLSHNYQLLARLAEFH----HFNLPLLVGMSRKSMIGQLLNVGP 232 (282)
T ss_pred HHHHHHHHHHHH-cCCChhhEEEeCC-CCcCC-CHHHHHHHHHHHHHHH----hCCCCEEEEecccHHHHhhcCCCh
Confidence 355677776666 6998888888885 45431 2233344433332211 134456788899999988776533
No 319
>COG4303 EutB Ethanolamine ammonia-lyase, large subunit [Amino acid transport and metabolism]
Probab=24.03 E-value=33 Score=36.62 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=22.1
Q ss_pred HHHHHhhhcCCCCCCchhhhhcCCC
Q 045707 441 RLIARFLRYHPINEFEPFFESLGLK 465 (901)
Q Consensus 441 ~~~~r~l~~~~i~~~~~f~es~G~~ 465 (901)
..+++.|--.||.|||.|+|+.|+-
T Consensus 413 ~~~R~~~glrP~~EFe~wl~~mGi~ 437 (453)
T COG4303 413 ATVRQLLGLRPIPEFERWLERMGIM 437 (453)
T ss_pred HHHHHHhCCCCchHHHHHHHHhCcc
Confidence 4677888889999999999999995
No 320
>PRK14135 recX recombination regulator RecX; Provisional
Probab=23.90 E-value=5.9e+02 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHhcCCChhHHhhHhh
Q 045707 592 FLRLFRNLGCSDEQLGGLIR 611 (901)
Q Consensus 592 ~l~fL~~~G~s~~~i~~li~ 611 (901)
+.+||..-||+.+.|..++.
T Consensus 238 ~~~~L~rrGF~~~~I~~~l~ 257 (263)
T PRK14135 238 LKQALYRKGFSYDDIDSFLR 257 (263)
T ss_pred HHHHHHHCCCCHHHHHHHHH
Confidence 34455555555555544443
No 321
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=23.85 E-value=6.8e+02 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=27.5
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHh
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEI 671 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~ 671 (901)
.|..+.|.+- |..++.|++= --|-+=|.++|. ..+-|.+.|+++-
T Consensus 156 ~PkfIfYAtY--LSEKIGYwRY-----ItIyRHLe~~Pe-------~r~~PIFk~Fe~W 200 (357)
T PLN02508 156 KPKFIFYATY--LSEKIGYWRY-----ITIYRHLQANPD-------YQLYPIFKYFENW 200 (357)
T ss_pred CcceeehhhH--hhhhhhhhhH-----hHHHHHHHhCcc-------cccchHHHHHHHH
Confidence 4666666554 6777777762 244555555553 4666777777664
No 322
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=23.76 E-value=4.8e+02 Score=30.61 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.3
Q ss_pred HHHHHHHcC
Q 045707 778 RFDCLVNAG 786 (901)
Q Consensus 778 r~~~L~~~G 786 (901)
|-++++-+|
T Consensus 723 R~E~yKGvG 731 (757)
T KOG4368|consen 723 RWEQYKGVG 731 (757)
T ss_pred hhhhhcccC
Confidence 333333333
No 323
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=2.7e+02 Score=33.72 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=19.9
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCcCcCChhhhhcCC
Q 045707 387 SKSPFVRKEAQAAMLEYLHLTRNLPFMDAEHMSKNS 422 (901)
Q Consensus 387 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~a~~~~~~s 422 (901)
+....+=.+|+.||. .-||+-..-+||=.-|
T Consensus 208 rsG~Lsg~qaR~aL~-----qS~Lpq~~LA~IW~Ls 238 (1118)
T KOG1029|consen 208 RSGYLSGQQARSALG-----QSGLPQNQLAHIWTLS 238 (1118)
T ss_pred cccccccHHHHHHHH-----hcCCchhhHhhheeee
Confidence 334444567888875 4677777777775544
No 324
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=23.39 E-value=4.1e+02 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=17.8
Q ss_pred hHhHhHHHHhhc-CccCchhhhHH
Q 045707 485 LLLENYHVLCNY-GVARNKIGKIL 507 (901)
Q Consensus 485 ~~~~~~~~L~~~-g~~~~~i~~l~ 507 (901)
.|++..+.|+.- |+||++-...-
T Consensus 3 ~L~~im~~LR~p~GCPWDr~QT~~ 26 (204)
T PRK12333 3 RLLEVMRRLRGPDGCPWDREQTHE 26 (204)
T ss_pred HHHHHHHHHhCCCCCCCccccCHH
Confidence 477888999885 89998766554
No 325
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=23.13 E-value=4.3e+02 Score=28.39 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=2.7
Q ss_pred ccccccc
Q 045707 138 IDGRLAV 144 (901)
Q Consensus 138 l~g~~i~ 144 (901)
|.||.|-
T Consensus 102 IYGRmIP 108 (389)
T KOG2932|consen 102 IYGRMIP 108 (389)
T ss_pred eeecccc
Confidence 3344333
No 326
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=22.99 E-value=6e+02 Score=27.84 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhh---chhH-HHHHHHhCccc
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKM---KVDE-IGKILRCHFLL 688 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~---~~~~-i~~~l~~~P~i 688 (901)
.|..+.|.+- |..++.|++= --|-+=|.++|. ..+-|.+.|+++-.= ...+ .+.++++.|.+
T Consensus 160 ~PkfIfYatY--LSEKIGYwRY-----ItIyRHLe~~Pe-------~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~l 225 (355)
T PRK13654 160 PPKFIFYATY--LSEKIGYWRY-----ITIYRHLEKHPE-------HRFHPIFKFFENWCQDENRHGDFFALLMRAQPKL 225 (355)
T ss_pred CcceeeehhH--hHhhhhHHHH-----HHHHHHHHhCcc-------cccCchHHHHHHHhcccchhHHHHHHHHhcCchh
Confidence 5777777765 7888888872 355566666664 577788888877422 2223 24444555555
Q ss_pred c
Q 045707 689 V 689 (901)
Q Consensus 689 l 689 (901)
+
T Consensus 226 l 226 (355)
T PRK13654 226 L 226 (355)
T ss_pred h
Confidence 4
No 327
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=22.89 E-value=1.8e+02 Score=29.41 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred hchhhcccChhHHHHHHHHHHHc-CCChhhhhhhhhcCce------eeecCCchhHHHHHHHHHhcCCcchhhhhhhccc
Q 045707 509 EAREVFQFDVGVFQSKLHAYEML-GLSQSFISKVIVCSPY------LLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQ 581 (901)
Q Consensus 509 ~~~~i~~~~~~~l~~~l~~L~~l-G~~~~~i~~~v~~~P~------lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~ 581 (901)
++.+++++....-+.....|.++ |+.+....+++..+.. +...|+ +.|..+ =|+..+...+++.
T Consensus 56 ~~~~l~gF~~~~ek~~f~~L~~i~GIGpk~A~~il~~fg~~~l~~~i~~~d~-~~L~~v------~Gig~k~A~~I~~-- 126 (192)
T PRK00116 56 DAILLYGFLTKEERELFRLLISVSGVGPKLALAILSGLSPEELVQAIANGDV-KALTKV------PGIGKKTAERIVL-- 126 (192)
T ss_pred hhHHHcCcCCHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHhCCH-HHHHhC------CCCCHHHHHHHHH--
Q ss_pred ccCCHHHHH------------------HHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHH
Q 045707 582 ETFNWSMML------------------RFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLL 632 (901)
Q Consensus 582 ~~~~~~~~~------------------~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl 632 (901)
.|..-. .++.+|..+|++..++.+++.+.-.- ..++++-++..+..|
T Consensus 127 ---~l~~~~~~~~~~~~~~~~~~~~~~ev~~aL~~LG~~~~~a~~~~~~~~~~-~~~~~~~i~~aL~~l 191 (192)
T PRK00116 127 ---ELKDKLAAAASAAAAAAAASSALEEAVSALVALGYKPKEASKAVAKILKE-AASVEELIREALKLL 191 (192)
T ss_pred ---HHHHHhhcccccccccccccchHHHHHHHHHHcCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHhc
No 328
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=22.78 E-value=2.1e+02 Score=35.50 Aligned_cols=75 Identities=11% Similarity=-0.013 Sum_probs=47.1
Q ss_pred HHhc-CCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHH-----------HHHHhhCCcceehhccccchH
Q 045707 596 FRNL-GCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNEL-----------CSIFLQFPQIEVRKFLLNLNQ 663 (901)
Q Consensus 596 L~~~-G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i-----------~~~l~~~P~ll~~s~e~~l~p 663 (901)
|.++ |++...+.++...+-. .......+.||.++|++...+ ..+|..+|..|..++..-==.
T Consensus 119 L~~v~gi~~~~~~~i~~~~~~------~~~~~~~~~~L~~~gi~~~~a~ki~~~yg~~~~~~i~~nPY~L~~~i~gigF~ 192 (720)
T TIGR01448 119 LLEVPGISKANLEKFVSQWSQ------QGDERRLLAGLQGLGIGIKLAQRIYKFYQADTLDRVEKDPYLLAEDVKGIGFL 192 (720)
T ss_pred HhcCCCCCHHHHHHHHHHHHH------hHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhCchhhhhhcCCCCHH
Confidence 4444 8888888888887632 224778889999999987554 445778888777655421112
Q ss_pred HHHHH-HHhhhchh
Q 045707 664 CLLFL-FEIKMKVD 676 (901)
Q Consensus 664 ~~~fL-~~~g~~~~ 676 (901)
+++-+ +.+|+..+
T Consensus 193 ~aD~iA~~~g~~~~ 206 (720)
T TIGR01448 193 TADQLAQALGIALN 206 (720)
T ss_pred HHHHHHHHcCCCCC
Confidence 22222 44666544
No 329
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=9.9e+02 Score=25.82 Aligned_cols=6 Identities=17% Similarity=0.069 Sum_probs=2.8
Q ss_pred cccCCc
Q 045707 347 NFVENP 352 (901)
Q Consensus 347 ~~~~~p 352 (901)
+.+.||
T Consensus 369 ~s~g~P 374 (389)
T KOG2932|consen 369 QSFGWP 374 (389)
T ss_pred CCCCCC
Confidence 344455
No 330
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.77 E-value=59 Score=29.94 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=42.2
Q ss_pred chhhhhcCCCCCCCCCCCCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHc----
Q 045707 456 EPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEML---- 531 (901)
Q Consensus 456 ~~f~es~G~~~~~~~~~~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~l---- 531 (901)
..||+..|+++..+. |+.+-...-+..++|...|..+ ..++. .+-..++.|
T Consensus 18 ~~~L~~~gi~~~~~~--------y~~~~~s~~eL~~~l~~~g~~~---~~li~--------------t~~~~~r~L~~~~ 72 (117)
T COG1393 18 LAWLEEHGIEYTFID--------YLKTPPSREELKKILSKLGDGV---EELIN--------------TRGTTYRELNLDK 72 (117)
T ss_pred HHHHHHcCCCcEEEE--------eecCCCCHHHHHHHHHHcCccH---HHHHH--------------hccchHHHcCCcc
Confidence 357888888887665 5555666666677777777653 22332 222333333
Q ss_pred -CCChhhhhhhhhcCceeee
Q 045707 532 -GLSQSFISKVIVCSPYLLI 550 (901)
Q Consensus 532 -G~~~~~i~~~v~~~P~lL~ 550 (901)
.++.+++...+...|.++-
T Consensus 73 ~~~~~~~~~~~i~~~~~Lik 92 (117)
T COG1393 73 EDLSDEELIEALLENPSLIK 92 (117)
T ss_pred cccChHHHHHHHHhChhhcc
Confidence 4455666777777775543
No 331
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=22.21 E-value=6.9e+02 Score=26.96 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHh
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEI 671 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~ 671 (901)
.|..+.|.+- |..++.|++= --|-+=|.++|. ..+-|.+.|+++-
T Consensus 140 ~PkfI~YatY--LSEKIGYwRY-----ItIyRHLe~~Pe-------~r~~PIF~~Fe~W 184 (323)
T cd01047 140 KPKFIFYATY--LSEKIGYWRY-----ITIYRHLERNPE-------NQFHPIFKYFENW 184 (323)
T ss_pred CccceeehhH--hhhhhhhHHH-----HHHHHHHHhCcc-------cccchHHHHHHHH
Confidence 4666666554 6666666662 244454555553 4666777777663
No 332
>PRK14137 recX recombination regulator RecX; Provisional
Probab=22.18 E-value=4.9e+02 Score=26.32 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCChHHHHHHHhh
Q 045707 627 TMIGLLLKFGSTRNELCSIFLQ 648 (901)
Q Consensus 627 p~~~fl~~lG~s~~~i~~~l~~ 648 (901)
..+.||..-|++.+.|..++..
T Consensus 157 K~~~~L~rRGFs~~~I~~al~~ 178 (195)
T PRK14137 157 SAYAFLARRGFSGAVIWPAIRE 178 (195)
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 3455666666666666655544
No 333
>PRK14134 recX recombination regulator RecX; Provisional
Probab=21.96 E-value=1e+03 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRV 798 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~ 798 (901)
-++-+.||..-||+.+.|..++..
T Consensus 255 ~~Kl~~~L~rkGf~~e~I~~vl~~ 278 (283)
T PRK14134 255 YRRLSNYLLRRGYSWEEVKKSLNE 278 (283)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455667888999999999988754
No 334
>KOG4168 consensus Predicted RNA polymerase III subunit C17 [Transcription]
Probab=21.68 E-value=5.8e+02 Score=24.27 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhhchhHHHHHH
Q 045707 624 IALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKIL 682 (901)
Q Consensus 624 ~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l 682 (901)
.+...+.-|.++|+.+.++..++...|. ..+ .+..+++=..+...+.++|..+|
T Consensus 71 ~i~el~~k~~~fkLtKAE~LqiiN~rPs---s~v--el~~~iE~~eeRf~~ee~i~elv 124 (149)
T KOG4168|consen 71 SIIELITKLKSFKLTKAEILQIINLRPS---SSV--ELYLIIEEVEERFQDEEDIEELV 124 (149)
T ss_pred HHHHHHHHhccccchHHHHHHHhccCcc---hHH--HHHHHHHHHHHhccchhcHHHHH
Confidence 3344444444555555555555555553 122 33444444444433444454444
No 335
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.51 E-value=2.1e+02 Score=30.24 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHHH-HcCCCHHH------------------HHHHHhhcCCccccC----------HHHHHHHHHHHHHhc
Q 045707 771 RGAELQERFDCLV-NAGLDRKD------------------VCEMIRVSPQILNMK----------KDVIKSKIDFLVNYL 821 (901)
Q Consensus 771 ~~~~l~~r~~~L~-~~G~s~~~------------------v~~mi~~~P~iL~~s----------~e~l~~k~~fL~~~m 821 (901)
..++++.|++-|. -+|++.++ |.+.+...|.||-.. -+.|+.-+.-+.+++
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l 185 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh
Confidence 3345888888888 88998763 566777888888654 346677777777777
Q ss_pred CCCcc-------c---------cccCCcccccc--cc-hhHHHHHHHHHHHHcC
Q 045707 822 GYPLS-------F---------LVSFPSYFNYT--EE-RIKLRFLMYNWLKDEG 856 (901)
Q Consensus 822 g~~~~-------~---------i~~~P~~L~ys--le-ri~pR~~~~~~L~~~g 856 (901)
|.+.= | +..--.+.-|. .+ --.|--.|++-+...+
T Consensus 186 ~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred CCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 76641 1 11222233333 23 4456677777776665
No 336
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=3.3e+02 Score=29.73 Aligned_cols=11 Identities=36% Similarity=0.193 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 045707 395 EAQAAMLEYLH 405 (901)
Q Consensus 395 ~a~~~~~~~l~ 405 (901)
+-+.|+.+=|.
T Consensus 228 e~~~aeq~slk 238 (365)
T KOG2391|consen 228 ERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 337
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.96 E-value=1.9e+02 Score=23.81 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 87 ETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 87 ~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
++|++.|.+.| ++..+.-+..+.++..-..-||+-....+....++ =+.++|+.+.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~--ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILN--IKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEe--ehhhCCeeEEEecC
Confidence 47889999999 78888888887666665667777766544333211 14477888777754
No 338
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=20.93 E-value=4.8e+02 Score=30.42 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=12.1
Q ss_pred CcHHHHHhhhccCCcee
Q 045707 175 VTTEVLLNFFGRHGEIE 191 (901)
Q Consensus 175 ~tee~L~~~F~~fG~I~ 191 (901)
.+.++|++++.-.|.|.
T Consensus 133 m~~~el~~~L~~~~~i~ 149 (582)
T PF03276_consen 133 MQRDELEDVLNFQGQIL 149 (582)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 35678888887777764
No 339
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=20.81 E-value=4.4e+02 Score=29.90 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=6.4
Q ss_pred HHHHHHHHcCC
Q 045707 216 EAAKKAVDDPH 226 (901)
Q Consensus 216 e~A~~Al~~l~ 226 (901)
..+..|++.++
T Consensus 91 ~~~~~A~e~l~ 101 (409)
T KOG4590|consen 91 RGVPVAIEALS 101 (409)
T ss_pred hhhhhhhhhhc
Confidence 34556666666
No 340
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=20.67 E-value=6.5e+02 Score=22.91 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCChhHHhhHhhc
Q 045707 586 WSMMLRFLRLFRNLGCSDEQLGGLIRQ 612 (901)
Q Consensus 586 ~~~~~~~l~fL~~~G~s~~~i~~li~~ 612 (901)
......++++|..-||+.+.|.+++..
T Consensus 92 ~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 92 RKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 444455778888888888888887764
No 341
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=20.57 E-value=3.7e+02 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH
Q 045707 595 LFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL 633 (901)
Q Consensus 595 fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~ 633 (901)
+.+.+|+|..+|..|-..||. +....+...+.-++
T Consensus 19 Lar~Lgls~~~I~~i~~~~p~----~l~eQv~~mL~~W~ 53 (83)
T cd08319 19 VLLDLGLSQTDIYRCKENHPH----NVQSQIVEALVKWR 53 (83)
T ss_pred HHHHcCCCHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Confidence 357899999999999999995 33445555665565
No 342
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.47 E-value=1.8e+02 Score=23.85 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=42.7
Q ss_pred HHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 87 ETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 87 ~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
++|.+-|...| +|..+.-+..+.++..-.--||+.+...+...++.- +.+.|..+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCC
Confidence 57888899999 688888777776666777788888777663333221 34777777777553
No 343
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=20.40 E-value=1e+03 Score=25.18 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=3.7
Q ss_pred ccccccc
Q 045707 138 IDGRLAV 144 (901)
Q Consensus 138 l~g~~i~ 144 (901)
+.||.|.
T Consensus 58 ~~~~~i~ 64 (279)
T PF07271_consen 58 IQGRPIT 64 (279)
T ss_pred eCCeecc
Confidence 5555554
No 344
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=20.30 E-value=1.6e+02 Score=25.29 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=27.2
Q ss_pred HHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHh
Q 045707 594 RLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLK 634 (901)
Q Consensus 594 ~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~ 634 (901)
.|-+.+|+++.+|..+-..||. +..+.....+..++.
T Consensus 18 ~laR~LGlse~~Id~i~~~~~~----~~~eq~~~mL~~W~~ 54 (86)
T cd08306 18 KLARKLGLSETKIESIEEAHPR----NLREQVRQSLREWKK 54 (86)
T ss_pred HHHHHcCCCHHHHHHHHHHCCC----CHHHHHHHHHHHHHH
Confidence 3567889999999999999983 344466667766653
No 345
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=20.28 E-value=1.4e+03 Score=26.52 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=4.5
Q ss_pred CCeEEEeC
Q 045707 72 HRKLFVRG 79 (901)
Q Consensus 72 ~~~lfV~n 79 (901)
....|||.
T Consensus 87 ra~~yvg~ 94 (502)
T PF05616_consen 87 RAVPYVGT 94 (502)
T ss_pred cccccchh
Confidence 34567664
No 346
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=20.06 E-value=5.8e+02 Score=22.11 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred hhchhHHHHHHHhCcccccccccc-chHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhh
Q 045707 672 KMKVDEIGKILRCHFLLVGSCTLK-KTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLL 750 (901)
Q Consensus 672 g~~~~~i~~~l~~~P~il~~~~~~-~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 750 (901)
+.+.++|.+.|...-......... -...-|..+|+....-.+ ...+++-..+
T Consensus 6 ~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~GL~g~~~s~---------------------------~rR~~l~~~L 58 (87)
T PF13331_consen 6 HASPEAIREALENARTEDEEPKESEITWEDLIELGLIGGPDSK---------------------------ERREKLGEYL 58 (87)
T ss_pred CCCHHHHHHHHHHhCccccCCccCcCCHHHHHHCCCCCCccHH---------------------------HHHHHHHHHH
Q ss_pred ccCcccChHHHHHHHHHHhcccHHHHHHHHHHHHcCCCHHHHHHHHh
Q 045707 751 DVGYVENSNEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIR 797 (901)
Q Consensus 751 ~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~~~G~s~~~v~~mi~ 797 (901)
.|||......+ +.|-.+|++++|+.++++
T Consensus 59 ~iGy~N~Kqll------------------krLN~f~it~~e~~~alk 87 (87)
T PF13331_consen 59 GIGYGNAKQLL------------------KRLNMFGITREEFEEALK 87 (87)
T ss_pred CCCCCCHHHHH------------------HHHHHcCCCHHHHHHHhC
Done!