Query 045707
Match_columns 901
No_of_seqs 750 out of 4146
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 2.1E-43 7.3E-48 389.8 23.7 305 487-881 20-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 1.6E-42 5.4E-47 370.9 16.5 258 522-895 6-268 (270)
3 4fp9_B Mterf domain-containing 100.0 1.9E-33 6.5E-38 303.5 19.4 215 588-890 45-270 (335)
4 3mva_O Transcription terminati 100.0 3.8E-32 1.3E-36 299.8 15.6 306 454-848 21-341 (343)
5 1l3k_A Heterogeneous nuclear r 100.0 2E-31 6.8E-36 271.4 19.4 181 67-247 8-188 (196)
6 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-30 5.1E-35 282.5 16.2 216 25-242 39-291 (292)
7 4f02_A Polyadenylate-binding p 100.0 5.6E-31 1.9E-35 271.7 11.5 169 70-244 13-183 (213)
8 2cjk_A Nuclear polyadenylated 100.0 2.3E-30 7.9E-35 256.3 13.2 164 71-242 2-166 (167)
9 3smz_A Protein raver-1, ribonu 100.0 1.9E-29 6.4E-34 272.7 19.2 215 27-245 22-267 (284)
10 3md3_A Nuclear and cytoplasmic 100.0 2.2E-29 7.4E-34 248.8 17.8 163 73-240 1-165 (166)
11 1b7f_A Protein (SXL-lethal pro 100.0 3E-29 1E-33 248.4 17.1 163 71-239 2-168 (168)
12 1fxl_A Paraneoplastic encephal 100.0 4.7E-29 1.6E-33 246.6 18.1 162 72-239 2-167 (167)
13 2qfj_A FBP-interacting repress 100.0 3.4E-29 1.2E-33 259.0 17.6 172 71-242 27-205 (216)
14 3nmr_A Cugbp ELAV-like family 100.0 3.8E-28 1.3E-32 242.2 17.5 164 71-240 2-175 (175)
15 2yh0_A Splicing factor U2AF 65 100.0 2.9E-28 9.9E-33 248.4 12.7 168 71-244 3-196 (198)
16 1fje_B Nucleolin RBD12, protei 99.9 4.9E-28 1.7E-32 241.6 10.9 166 67-242 8-174 (175)
17 3m66_A Mterf3, mterf domain-co 99.9 2.7E-27 9.3E-32 252.8 16.3 239 488-845 7-254 (270)
18 2g4b_A Splicing factor U2AF 65 99.9 5.1E-27 1.8E-31 233.4 16.6 158 71-240 3-172 (172)
19 3tyt_A Heterogeneous nuclear r 99.9 1.8E-26 6.1E-31 235.5 13.9 163 70-239 2-204 (205)
20 3pgw_A U1-A; protein-RNA compl 99.9 2E-25 7E-30 240.7 18.6 165 68-240 5-281 (282)
21 2adc_A Polypyrimidine tract-bi 99.9 3.7E-25 1.3E-29 230.8 17.4 166 67-242 29-228 (229)
22 2ghp_A U4/U6 snRNA-associated 99.9 2.3E-25 7.9E-30 241.5 15.8 162 66-243 35-198 (292)
23 3smz_A Protein raver-1, ribonu 99.9 5.2E-25 1.8E-29 237.8 17.0 154 70-242 20-175 (284)
24 1qm9_A Polypyrimidine tract-bi 99.9 2.4E-25 8.3E-30 226.8 13.4 162 71-242 2-197 (198)
25 3sde_A Paraspeckle component 1 99.9 7.9E-25 2.7E-29 233.0 15.0 155 70-243 20-180 (261)
26 4fp9_B Mterf domain-containing 99.9 1E-21 3.5E-26 212.0 14.3 182 519-823 44-227 (335)
27 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-20 4.9E-25 184.0 14.4 144 101-246 2-154 (158)
28 4f25_A Polyadenylate-binding p 99.8 4.2E-19 1.4E-23 163.4 7.8 107 71-179 4-113 (115)
29 4fxv_A ELAV-like protein 1; RN 99.7 1.3E-17 4.6E-22 148.7 8.3 80 70-149 17-97 (99)
30 2i2y_A Fusion protein consists 99.7 2.9E-17 1E-21 158.9 11.2 128 110-243 9-149 (150)
31 1l3k_A Heterogeneous nuclear r 99.7 3E-17 1E-21 166.3 10.3 131 23-153 9-185 (196)
32 4fxv_A ELAV-like protein 1; RN 99.7 4.2E-17 1.4E-21 145.4 9.7 80 162-241 18-98 (99)
33 2lxi_A RNA-binding protein 10; 99.7 3.2E-17 1.1E-21 143.8 6.0 81 72-152 1-84 (91)
34 3s7r_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 138.5 9.4 82 67-148 6-87 (87)
35 2lxi_A RNA-binding protein 10; 99.7 8.8E-17 3E-21 141.0 7.8 82 163-244 1-85 (91)
36 2lea_A Serine/arginine-rich sp 99.7 1.6E-16 5.6E-21 150.3 9.6 125 115-246 5-131 (135)
37 3s8s_A Histone-lysine N-methyl 99.7 1.4E-16 4.8E-21 144.8 8.5 82 69-150 3-85 (110)
38 2cjk_A Nuclear polyadenylated 99.7 2.9E-17 1E-21 161.8 3.7 125 27-151 3-166 (167)
39 2lkz_A RNA-binding protein 5; 99.6 6E-17 2.1E-21 142.7 5.1 83 68-150 5-94 (95)
40 4f02_A Polyadenylate-binding p 99.6 6.7E-17 2.3E-21 166.1 5.3 126 24-151 12-181 (213)
41 2dgo_A Cytotoxic granule-assoc 99.6 2.5E-15 8.6E-20 138.1 14.7 88 159-246 11-99 (115)
42 2lkz_A RNA-binding protein 5; 99.6 1.4E-16 4.7E-21 140.4 5.9 80 162-241 8-94 (95)
43 1s79_A Lupus LA protein; RRM, 99.6 3.4E-16 1.2E-20 140.4 8.6 82 68-150 7-88 (103)
44 3s8s_A Histone-lysine N-methyl 99.6 7E-16 2.4E-20 140.2 10.5 83 161-243 4-87 (110)
45 1b7f_A Protein (SXL-lethal pro 99.6 3.6E-16 1.2E-20 154.0 9.3 122 27-148 3-168 (168)
46 2dgs_A DAZ-associated protein 99.6 7.2E-16 2.5E-20 137.7 10.4 87 67-153 5-91 (99)
47 2rs2_A Musashi-1, RNA-binding 99.6 4.1E-16 1.4E-20 141.8 8.3 87 66-152 19-105 (109)
48 3md3_A Nuclear and cytoplasmic 99.6 3.2E-16 1.1E-20 153.9 7.6 121 29-149 2-165 (166)
49 2cq0_A Eukaryotic translation 99.6 2.5E-15 8.6E-20 135.2 12.8 87 160-246 12-99 (103)
50 1fxl_A Paraneoplastic encephal 99.6 5E-16 1.7E-20 152.7 8.8 122 27-148 2-167 (167)
51 2g4b_A Splicing factor U2AF 65 99.6 4.9E-16 1.7E-20 153.8 8.7 122 27-148 4-171 (172)
52 2dgs_A DAZ-associated protein 99.6 2.8E-15 9.4E-20 133.9 12.3 86 160-246 7-93 (99)
53 3p5t_L Cleavage and polyadenyl 99.6 3.2E-16 1.1E-20 137.3 5.9 80 73-152 2-84 (90)
54 2cqd_A RNA-binding region cont 99.6 1.4E-15 4.9E-20 140.1 10.5 87 66-152 11-97 (116)
55 2qfj_A FBP-interacting repress 99.6 1E-15 3.6E-20 157.5 10.7 127 27-153 28-207 (216)
56 2cqd_A RNA-binding region cont 99.6 5E-15 1.7E-19 136.4 14.0 85 159-243 13-97 (116)
57 1whw_A Hypothetical protein ri 99.6 1.1E-15 3.7E-20 136.5 9.2 86 68-153 4-90 (99)
58 2mss_A Protein (musashi1); RNA 99.6 5.9E-16 2E-20 130.5 7.1 75 74-148 1-75 (75)
59 1whw_A Hypothetical protein ri 99.6 3.1E-15 1E-19 133.6 12.0 85 161-245 6-91 (99)
60 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.3E-20 137.7 9.4 87 67-153 11-97 (105)
61 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5E-16 1.7E-20 131.7 6.3 76 73-148 1-76 (77)
62 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.1E-16 2.8E-20 133.8 7.6 81 70-150 4-85 (87)
63 2hvz_A Splicing factor, argini 99.6 8.1E-16 2.8E-20 137.9 7.7 95 73-172 1-100 (101)
64 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.7E-15 5.8E-20 131.7 9.6 82 161-242 4-86 (87)
65 3md1_A Nuclear and cytoplasmic 99.6 2.4E-15 8.3E-20 129.5 10.3 80 164-243 2-82 (83)
66 2dnz_A Probable RNA-binding pr 99.6 3.4E-15 1.1E-19 132.2 11.5 84 162-245 4-88 (95)
67 1iqt_A AUF1, heterogeneous nuc 99.6 5.8E-16 2E-20 130.5 6.1 75 74-148 1-75 (75)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.6 8.8E-16 3E-20 132.9 7.2 81 68-148 3-84 (85)
69 2dnz_A Probable RNA-binding pr 99.6 2.6E-15 8.7E-20 133.0 10.4 85 70-154 3-88 (95)
70 1x5t_A Splicing factor 3B subu 99.6 2.6E-15 9E-20 133.2 10.5 85 162-246 4-90 (96)
71 3ucg_A Polyadenylate-binding p 99.6 2.5E-15 8.7E-20 131.2 10.2 81 71-151 5-85 (89)
72 2do4_A Squamous cell carcinoma 99.6 5.1E-15 1.7E-19 132.4 12.3 84 160-244 14-98 (100)
73 1x5u_A Splicing factor 3B subu 99.6 4.4E-15 1.5E-19 134.1 12.0 88 159-246 11-99 (105)
74 3p5t_L Cleavage and polyadenyl 99.6 5.8E-16 2E-20 135.6 5.9 81 164-244 2-85 (90)
75 2dnm_A SRP46 splicing factor; 99.6 2.4E-15 8.1E-20 135.4 10.1 87 160-246 10-97 (103)
76 1x5t_A Splicing factor 3B subu 99.6 1.6E-15 5.3E-20 134.6 8.7 84 70-153 3-88 (96)
77 3md1_A Nuclear and cytoplasmic 99.6 1.3E-15 4.4E-20 131.2 7.9 79 73-151 2-81 (83)
78 2cqg_A TDP-43, TAR DNA-binding 99.6 3.5E-15 1.2E-19 134.2 10.8 85 68-153 11-95 (103)
79 2dgo_A Cytotoxic granule-assoc 99.6 3.1E-15 1.1E-19 137.6 10.6 86 68-153 11-97 (115)
80 2div_A TRNA selenocysteine ass 99.6 2.6E-15 9E-20 134.0 9.9 84 68-151 5-94 (99)
81 2cpz_A CUG triplet repeat RNA- 99.6 1.9E-15 6.5E-20 139.0 9.2 87 67-153 20-107 (115)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3E-15 1E-19 134.4 10.1 87 160-246 9-96 (102)
83 2jrs_A RNA-binding protein 39; 99.6 1.7E-15 5.9E-20 137.4 8.5 86 66-151 20-106 (108)
84 1x5u_A Splicing factor 3B subu 99.6 2.6E-15 9E-20 135.6 9.6 87 67-153 10-97 (105)
85 2dnm_A SRP46 splicing factor; 99.6 2.5E-15 8.6E-20 135.2 9.4 87 67-153 8-95 (103)
86 2cq0_A Eukaryotic translation 99.6 1.6E-15 5.6E-20 136.5 8.2 86 68-153 11-97 (103)
87 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.4E-15 8E-20 147.8 10.0 128 119-246 11-156 (165)
88 2fy1_A RNA-binding motif prote 99.6 6.4E-15 2.2E-19 135.4 12.2 81 162-243 6-87 (116)
89 1p27_B RNA-binding protein 8A; 99.6 1.9E-15 6.6E-20 136.8 8.5 86 66-151 17-103 (106)
90 2cpf_A RNA binding motif prote 99.6 2.3E-15 7.7E-20 134.2 8.7 84 70-153 3-90 (98)
91 1x5s_A Cold-inducible RNA-bind 99.6 2.3E-15 7.7E-20 135.3 8.8 87 67-153 7-94 (102)
92 2cpz_A CUG triplet repeat RNA- 99.6 5E-15 1.7E-19 136.2 11.2 87 160-246 22-109 (115)
93 1p27_B RNA-binding protein 8A; 99.6 3.9E-15 1.3E-19 134.7 10.4 84 160-243 20-104 (106)
94 4f25_A Polyadenylate-binding p 99.6 3.1E-15 1E-19 137.5 9.7 81 163-245 5-86 (115)
95 2x1f_A MRNA 3'-END-processing 99.6 1.6E-15 5.6E-20 134.5 7.6 81 72-152 2-83 (96)
96 2d9p_A Polyadenylate-binding p 99.6 8.6E-15 2.9E-19 131.7 12.4 85 160-246 12-97 (103)
97 3s7r_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 129.0 10.2 80 160-239 8-87 (87)
98 3q2s_C Cleavage and polyadenyl 99.6 3.8E-16 1.3E-20 161.5 3.9 81 162-242 67-150 (229)
99 1x4e_A RNA binding motif, sing 99.6 1.2E-15 4.2E-20 132.0 6.5 80 70-149 3-83 (85)
100 2la6_A RNA-binding protein FUS 99.6 2.6E-15 8.8E-20 134.1 8.8 82 67-148 8-98 (99)
101 2dhg_A TRNA selenocysteine ass 99.6 5.5E-15 1.9E-19 133.2 11.0 84 69-153 6-92 (104)
102 1x4h_A RNA-binding protein 28; 99.6 7.5E-15 2.6E-19 134.0 12.0 87 160-246 12-105 (111)
103 2dnh_A Bruno-like 5, RNA bindi 99.6 8.5E-15 2.9E-19 132.2 12.2 86 160-246 12-101 (105)
104 2x1f_A MRNA 3'-END-processing 99.6 3.4E-15 1.2E-19 132.4 9.4 81 163-243 2-83 (96)
105 1x4h_A RNA-binding protein 28; 99.6 2.6E-15 9E-20 137.1 8.9 87 67-153 10-103 (111)
106 1sjq_A Polypyrimidine tract-bi 99.6 2.6E-15 8.9E-20 133.6 8.5 81 68-154 12-95 (105)
107 3pgw_S U1-70K; protein-RNA com 99.6 2.7E-15 9.2E-20 169.9 10.8 157 88-244 8-184 (437)
108 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-15 4.3E-20 140.2 6.7 104 69-189 5-109 (115)
109 2fy1_A RNA-binding motif prote 99.6 4.7E-15 1.6E-19 136.3 10.5 83 69-152 4-87 (116)
110 2do4_A Squamous cell carcinoma 99.6 2.9E-15 9.8E-20 134.0 8.8 84 68-152 13-97 (100)
111 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 129.3 8.9 80 161-240 5-85 (85)
112 2dng_A Eukaryotic translation 99.6 4.5E-15 1.5E-19 133.5 10.1 85 68-153 11-95 (103)
113 2dng_A Eukaryotic translation 99.6 1.2E-14 4.2E-19 130.7 13.0 85 159-245 11-96 (103)
114 2dgp_A Bruno-like 4, RNA bindi 99.6 4.7E-15 1.6E-19 134.2 10.2 87 159-245 9-99 (106)
115 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.4E-15 4.9E-20 136.5 6.7 88 67-154 7-95 (102)
116 2cpf_A RNA binding motif prote 99.6 5.5E-15 1.9E-19 131.7 10.4 84 162-245 4-91 (98)
117 2cqc_A Arginine/serine-rich sp 99.6 6.1E-15 2.1E-19 130.5 10.7 82 160-241 12-94 (95)
118 3nmr_A Cugbp ELAV-like family 99.6 2.4E-15 8.3E-20 149.1 9.0 122 26-148 2-174 (175)
119 2cph_A RNA binding motif prote 99.6 8.4E-15 2.9E-19 132.7 11.8 87 159-245 11-100 (107)
120 2rs2_A Musashi-1, RNA-binding 99.6 4.3E-15 1.5E-19 135.0 9.8 85 161-245 23-107 (109)
121 2cqc_A Arginine/serine-rich sp 99.6 2.1E-15 7.1E-20 133.6 7.5 83 68-150 11-94 (95)
122 2do0_A HnRNP M, heterogeneous 99.6 1.7E-14 6E-19 132.3 14.0 85 160-245 12-97 (114)
123 2dgp_A Bruno-like 4, RNA bindi 99.6 2.6E-15 8.8E-20 135.9 8.2 87 67-153 8-98 (106)
124 2dnh_A Bruno-like 5, RNA bindi 99.6 4.5E-15 1.5E-19 134.0 9.8 86 67-153 10-99 (105)
125 3ns6_A Eukaryotic translation 99.6 7.2E-16 2.5E-20 137.9 4.5 80 71-150 5-92 (100)
126 1x5s_A Cold-inducible RNA-bind 99.6 5.3E-15 1.8E-19 132.8 10.1 86 160-245 9-95 (102)
127 2e5h_A Zinc finger CCHC-type a 99.6 6.4E-15 2.2E-19 130.1 10.5 82 159-240 12-94 (94)
128 2cph_A RNA binding motif prote 99.6 3.6E-15 1.2E-19 135.2 9.0 87 67-153 10-99 (107)
129 2e5h_A Zinc finger CCHC-type a 99.6 2.3E-15 7.8E-20 133.0 7.5 81 68-148 12-93 (94)
130 3ns6_A Eukaryotic translation 99.6 1.7E-15 5.9E-20 135.4 6.6 81 162-242 5-93 (100)
131 1wez_A HnRNP H', FTP-3, hetero 99.6 3.1E-15 1.1E-19 134.0 8.3 82 68-151 11-92 (102)
132 1wg5_A Heterogeneous nuclear r 99.6 5.4E-15 1.8E-19 133.2 9.8 83 68-151 11-94 (104)
133 2la6_A RNA-binding protein FUS 99.6 7.8E-15 2.7E-19 130.9 10.6 82 159-240 9-99 (99)
134 2jrs_A RNA-binding protein 39; 99.6 7.9E-15 2.7E-19 133.0 10.7 84 160-243 23-107 (108)
135 1oo0_B CG8781-PA, drosophila Y 99.6 5.7E-15 2E-19 134.6 9.8 85 160-244 23-108 (110)
136 1x4b_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 136.2 9.5 83 71-153 26-108 (116)
137 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-14 4.4E-19 130.8 11.8 86 159-246 11-98 (104)
138 1oo0_B CG8781-PA, drosophila Y 99.6 2.6E-15 8.9E-20 136.9 7.2 88 65-152 19-107 (110)
139 3n9u_C Cleavage and polyadenyl 99.6 3.8E-15 1.3E-19 144.2 8.6 81 70-150 53-136 (156)
140 2dh8_A DAZ-associated protein 99.6 6.9E-15 2.4E-19 132.8 9.7 87 159-246 12-99 (105)
141 2kt5_A RNA and export factor-b 99.6 1.9E-14 6.5E-19 134.2 12.6 85 159-244 31-116 (124)
142 2d9p_A Polyadenylate-binding p 99.6 5.8E-15 2E-19 132.8 8.7 85 67-153 10-95 (103)
143 2khc_A Testis-specific RNP-typ 99.6 3.8E-15 1.3E-19 137.6 7.7 81 68-148 36-117 (118)
144 2kxn_B Transformer-2 protein h 99.6 4.4E-15 1.5E-19 139.1 8.2 85 67-151 41-126 (129)
145 1u6f_A Tcubp1, RNA-binding pro 99.6 7.1E-15 2.4E-19 140.1 9.7 88 67-154 37-125 (139)
146 1wi8_A EIF-4B, eukaryotic tran 99.6 5.4E-15 1.8E-19 133.3 8.4 84 69-153 12-96 (104)
147 1u6f_A Tcubp1, RNA-binding pro 99.6 2.2E-14 7.4E-19 136.7 13.1 86 160-245 39-125 (139)
148 2cqg_A TDP-43, TAR DNA-binding 99.6 2.6E-14 8.8E-19 128.5 12.8 86 159-245 11-96 (103)
149 2yh0_A Splicing factor U2AF 65 99.6 8.4E-15 2.9E-19 148.4 10.7 83 70-152 112-195 (198)
150 2dhg_A TRNA selenocysteine ass 99.6 1.3E-14 4.5E-19 130.7 10.8 85 161-246 7-94 (104)
151 2cpy_A RNA-binding protein 12; 99.6 3.1E-15 1.1E-19 137.2 6.8 83 68-151 11-94 (114)
152 2ywk_A Putative RNA-binding pr 99.6 6.4E-15 2.2E-19 130.4 8.6 82 68-150 12-94 (95)
153 4a8x_A RNA-binding protein wit 99.6 6.2E-15 2.1E-19 128.4 8.4 83 162-244 3-87 (88)
154 2kxn_B Transformer-2 protein h 99.6 7.6E-15 2.6E-19 137.5 9.5 85 160-244 43-128 (129)
155 2cpe_A RNA-binding protein EWS 99.6 1.3E-14 4.3E-19 133.0 10.7 86 160-245 12-106 (113)
156 2cpe_A RNA-binding protein EWS 99.6 5E-15 1.7E-19 135.7 7.9 86 68-153 11-105 (113)
157 1s79_A Lupus LA protein; RRM, 99.6 8.8E-15 3E-19 131.2 9.3 79 161-241 9-88 (103)
158 2div_A TRNA selenocysteine ass 99.6 1.2E-14 4.1E-19 129.7 10.1 83 161-243 7-95 (99)
159 2dgv_A HnRNP M, heterogeneous 99.5 1E-14 3.4E-19 128.3 9.4 83 68-152 4-87 (92)
160 2m2b_A RNA-binding protein 10; 99.5 3.3E-15 1.1E-19 140.8 6.6 84 68-152 19-109 (131)
161 1p1t_A Cleavage stimulation fa 99.5 2.7E-15 9.1E-20 135.3 5.7 83 70-152 6-89 (104)
162 2dis_A Unnamed protein product 99.5 1.3E-14 4.4E-19 132.0 10.2 86 68-153 4-94 (109)
163 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.9E-15 1E-19 133.9 5.8 82 69-151 16-98 (100)
164 2ki2_A SS-DNA binding protein 99.5 2.5E-15 8.4E-20 131.6 5.3 79 73-152 2-81 (90)
165 1p1t_A Cleavage stimulation fa 99.5 7.8E-15 2.7E-19 132.2 8.5 85 160-244 5-90 (104)
166 3ucg_A Polyadenylate-binding p 99.5 1.2E-14 4.2E-19 126.8 9.5 80 162-242 5-85 (89)
167 2mss_A Protein (musashi1); RNA 99.5 7.4E-15 2.5E-19 123.7 7.5 74 165-239 1-75 (75)
168 2xs2_A Deleted in azoospermia- 99.5 5.7E-15 2E-19 132.6 7.2 81 69-151 6-86 (102)
169 2dgw_A Probable RNA-binding pr 99.5 1.4E-14 4.8E-19 127.1 9.6 82 68-151 6-87 (91)
170 2dis_A Unnamed protein product 99.5 2.6E-14 9E-19 129.9 11.6 84 162-245 7-95 (109)
171 2jwn_A Embryonic polyadenylate 99.5 1.2E-14 4E-19 135.6 9.5 81 72-152 36-116 (124)
172 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.8E-15 2E-19 125.1 6.7 76 164-239 1-76 (77)
173 4a8x_A RNA-binding protein wit 99.5 5.3E-15 1.8E-19 128.9 6.5 82 70-151 2-85 (88)
174 2cq3_A RNA-binding protein 9; 99.5 4.1E-14 1.4E-18 127.2 12.5 86 159-246 11-97 (103)
175 2cqp_A RNA-binding protein 12; 99.5 4.4E-15 1.5E-19 132.3 6.0 83 68-150 11-94 (98)
176 2krb_A Eukaryotic translation 99.5 9.1E-15 3.1E-19 125.2 7.6 73 72-146 1-81 (81)
177 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.8E-14 9.7E-19 138.8 12.0 85 161-245 37-122 (156)
178 2hgm_A HNRPF protein, heteroge 99.5 1.1E-14 3.8E-19 134.8 8.6 81 68-150 38-120 (126)
179 2cqp_A RNA-binding protein 12; 99.5 1.7E-14 5.7E-19 128.5 9.5 83 160-242 12-95 (98)
180 2ywk_A Putative RNA-binding pr 99.5 1.5E-14 5.2E-19 127.9 9.1 81 160-241 13-94 (95)
181 2hgl_A HNRPF protein, heteroge 99.5 7.6E-15 2.6E-19 138.1 7.5 83 67-150 39-124 (136)
182 1x4b_A Heterogeneous nuclear r 99.5 2E-14 6.7E-19 132.4 10.1 85 161-246 25-110 (116)
183 3ulh_A THO complex subunit 4; 99.5 1E-14 3.5E-19 132.2 8.0 81 68-149 25-106 (107)
184 2khc_A Testis-specific RNP-typ 99.5 1.7E-14 5.9E-19 133.2 9.5 81 160-240 37-118 (118)
185 2dgw_A Probable RNA-binding pr 99.5 4.3E-14 1.5E-18 123.9 11.5 81 160-243 7-88 (91)
186 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.1E-14 1.4E-18 127.2 11.6 85 160-246 12-97 (103)
187 2m2b_A RNA-binding protein 10; 99.5 1.2E-14 4.2E-19 136.8 8.5 85 160-245 20-111 (131)
188 2cq4_A RNA binding motif prote 99.5 9.2E-15 3.2E-19 134.1 7.4 81 71-151 24-104 (114)
189 2cq3_A RNA-binding protein 9; 99.5 2.2E-14 7.6E-19 129.0 9.7 85 67-153 10-95 (103)
190 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.6E-14 8.8E-19 128.5 10.1 85 67-153 10-95 (103)
191 2db1_A Heterogeneous nuclear r 99.5 1E-14 3.5E-19 134.5 7.5 81 69-150 14-97 (118)
192 2dgx_A KIAA0430 protein; RRM d 99.5 2.2E-14 7.4E-19 127.2 9.3 81 161-244 7-92 (96)
193 3ex7_B RNA-binding protein 8A; 99.5 1E-14 3.6E-19 136.4 7.6 88 66-153 16-104 (126)
194 2ek1_A RNA-binding protein 12; 99.5 4.2E-15 1.4E-19 131.6 4.6 81 69-149 12-93 (95)
195 2ki2_A SS-DNA binding protein 99.5 5E-15 1.7E-19 129.6 5.1 80 164-244 2-82 (90)
196 2do0_A HnRNP M, heterogeneous 99.5 2.3E-14 8E-19 131.4 9.7 84 67-151 10-94 (114)
197 3ex7_B RNA-binding protein 8A; 99.5 2E-14 6.8E-19 134.5 9.3 86 160-245 19-105 (126)
198 3n9u_C Cleavage and polyadenyl 99.5 2.3E-14 7.7E-19 138.8 9.9 81 162-242 54-137 (156)
199 2dgv_A HnRNP M, heterogeneous 99.5 3.2E-14 1.1E-18 125.0 9.9 83 160-244 5-88 (92)
200 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.9E-19 134.4 7.2 79 70-149 21-103 (123)
201 2lmi_A GRSF-1, G-rich sequence 99.5 9E-15 3.1E-19 132.5 6.3 83 67-150 6-91 (107)
202 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.3E-14 4.5E-19 129.7 7.3 82 160-243 16-99 (100)
203 2cpi_A CCR4-NOT transcription 99.5 4E-14 1.4E-18 129.1 10.7 84 160-243 12-102 (111)
204 2dgx_A KIAA0430 protein; RRM d 99.5 1.4E-14 4.8E-19 128.4 7.4 80 70-152 7-91 (96)
205 1wel_A RNA-binding protein 12; 99.5 9.1E-15 3.1E-19 136.3 6.4 82 69-150 22-103 (124)
206 2cpx_A Hypothetical protein FL 99.5 1.8E-14 6.1E-19 132.4 8.3 86 161-246 23-109 (115)
207 1sjq_A Polypyrimidine tract-bi 99.5 1.4E-14 4.9E-19 128.8 7.3 80 161-246 14-96 (105)
208 2nlw_A Eukaryotic translation 99.5 1.8E-14 6.2E-19 130.0 7.9 81 68-150 11-99 (105)
209 2lea_A Serine/arginine-rich sp 99.5 1.1E-14 3.8E-19 137.6 6.8 87 66-152 41-128 (135)
210 3ulh_A THO complex subunit 4; 99.5 3.5E-14 1.2E-18 128.6 9.9 80 160-240 26-106 (107)
211 1wg5_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 125.3 12.2 82 160-243 12-95 (104)
212 2kn4_A Immunoglobulin G-bindin 99.5 2.3E-14 8E-19 139.7 9.1 84 69-152 67-151 (158)
213 1x4e_A RNA binding motif, sing 99.5 7.7E-15 2.6E-19 126.9 5.0 79 162-240 4-83 (85)
214 2ad9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 131.5 7.7 81 68-154 27-110 (119)
215 3sde_A Paraspeckle component 1 99.5 3.1E-14 1.1E-18 151.0 10.7 126 25-151 20-179 (261)
216 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-14 5.4E-19 122.3 6.5 74 70-149 5-79 (89)
217 1h2v_Z 20 kDa nuclear CAP bind 99.5 4E-14 1.4E-18 137.7 10.2 86 67-152 34-120 (156)
218 2err_A Ataxin-2-binding protei 99.5 1.6E-14 5.6E-19 131.2 6.9 85 65-151 22-107 (109)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-14 7.7E-19 136.7 8.3 82 67-148 58-140 (140)
220 2ek1_A RNA-binding protein 12; 99.5 1.8E-14 6.2E-19 127.4 7.0 80 162-241 14-94 (95)
221 1iqt_A AUF1, heterogeneous nuc 99.5 1.2E-14 4E-19 122.5 5.5 75 165-239 1-75 (75)
222 3r27_A HnRNP L, heterogeneous 99.5 2.2E-14 7.4E-19 126.3 7.3 78 68-151 17-97 (100)
223 1fje_B Nucleolin RBD12, protei 99.5 8.8E-15 3E-19 145.2 5.4 124 23-151 9-174 (175)
224 2jwn_A Embryonic polyadenylate 99.5 6E-14 2E-18 130.8 10.7 81 162-243 35-116 (124)
225 2kt5_A RNA and export factor-b 99.5 3.7E-14 1.3E-18 132.2 9.2 84 68-152 31-115 (124)
226 1x4a_A Splicing factor, argini 99.5 8.4E-14 2.9E-18 126.6 11.2 84 159-245 18-102 (109)
227 2cq1_A PTB-like protein L; RRM 99.5 1E-13 3.6E-18 123.3 11.4 81 160-246 12-95 (101)
228 1fj7_A Nucleolin RBD1, protein 99.5 5.3E-15 1.8E-19 132.5 3.0 83 69-152 14-96 (101)
229 1x5o_A RNA binding motif, sing 99.5 9.4E-14 3.2E-18 127.3 11.4 82 160-242 22-112 (114)
230 2a3j_A U1 small nuclear ribonu 99.5 3.7E-14 1.3E-18 131.9 8.7 82 68-152 25-111 (127)
231 2cq4_A RNA binding motif prote 99.5 1E-14 3.5E-19 133.8 4.8 83 161-244 23-106 (114)
232 2nlw_A Eukaryotic translation 99.5 5.1E-14 1.8E-18 127.0 9.3 80 161-242 13-100 (105)
233 2hgl_A HNRPF protein, heteroge 99.5 4.4E-14 1.5E-18 132.9 9.1 81 160-242 41-125 (136)
234 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 136.8 5.6 82 68-151 42-123 (139)
235 2wbr_A GW182, gawky, LD47780P; 99.5 2.8E-14 9.6E-19 120.8 6.8 73 162-240 6-79 (89)
236 2dnn_A RNA-binding protein 12; 99.5 2.8E-14 9.7E-19 128.9 7.2 77 72-150 16-92 (109)
237 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 136.8 5.3 122 115-243 2-124 (139)
238 2fc9_A NCL protein; structure 99.5 1.5E-13 5.1E-18 123.0 11.9 80 160-243 12-92 (101)
239 2j8a_A Histone-lysine N-methyl 99.5 3.8E-14 1.3E-18 128.0 7.7 78 73-150 3-95 (136)
240 1x4d_A Matrin 3; structural ge 99.5 6.3E-14 2.1E-18 124.6 9.0 77 161-243 13-93 (102)
241 2cq1_A PTB-like protein L; RRM 99.5 5.1E-14 1.7E-18 125.4 8.4 79 69-153 12-93 (101)
242 2cpi_A CCR4-NOT transcription 99.5 1.8E-14 6.2E-19 131.4 5.5 85 68-152 11-102 (111)
243 1x4a_A Splicing factor, argini 99.5 6.7E-14 2.3E-18 127.2 9.3 83 68-153 18-101 (109)
244 2ad9_A Polypyrimidine tract-bi 99.5 5.8E-14 2E-18 128.2 8.8 80 161-246 29-111 (119)
245 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.6E-14 2.9E-18 132.7 10.4 81 159-239 59-140 (140)
246 1x4d_A Matrin 3; structural ge 99.5 2.2E-14 7.5E-19 127.6 5.8 77 69-151 12-92 (102)
247 1wex_A Hypothetical protein (r 99.5 6.3E-14 2.2E-18 125.6 8.7 79 69-153 12-93 (104)
248 1x5o_A RNA binding motif, sing 99.5 5E-14 1.7E-18 129.2 8.3 82 67-149 20-110 (114)
249 3q2s_C Cleavage and polyadenyl 99.5 5.7E-14 2E-18 145.2 9.6 80 71-150 67-149 (229)
250 3r27_A HnRNP L, heterogeneous 99.5 6.4E-14 2.2E-18 123.3 8.4 78 160-243 18-98 (100)
251 1wex_A Hypothetical protein (r 99.5 1.2E-13 4.2E-18 123.7 10.5 79 161-245 13-94 (104)
252 2cpy_A RNA-binding protein 12; 99.5 1.9E-14 6.7E-19 131.9 5.4 82 160-243 12-95 (114)
253 2fc8_A NCL protein; structure 99.5 1.9E-13 6.4E-18 122.6 11.7 84 159-245 11-95 (102)
254 1wez_A HnRNP H', FTP-3, hetero 99.5 1.5E-13 5.3E-18 122.9 10.9 81 160-243 12-93 (102)
255 2err_A Ataxin-2-binding protei 99.5 5.4E-14 1.9E-18 127.7 7.8 82 159-242 25-107 (109)
256 2fc9_A NCL protein; structure 99.5 5E-14 1.7E-18 126.1 7.3 83 67-153 10-93 (101)
257 3pgw_A U1-A; protein-RNA compl 99.5 9.3E-13 3.2E-17 141.4 18.6 81 160-243 6-91 (282)
258 2db1_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 131.1 6.1 81 160-242 14-98 (118)
259 2dnq_A RNA-binding protein 4B; 99.5 1.1E-13 3.6E-18 121.2 9.0 79 67-153 3-82 (90)
260 2krb_A Eukaryotic translation 99.5 4.8E-14 1.7E-18 120.6 6.7 72 163-236 1-80 (81)
261 1rk8_A CG8781-PA, CG8781-PA pr 99.5 6E-14 2.1E-18 137.7 8.2 88 66-153 66-154 (165)
262 1wel_A RNA-binding protein 12; 99.5 7.5E-14 2.6E-18 130.1 8.4 82 160-242 22-104 (124)
263 2e5g_A U6 snRNA-specific termi 99.5 2.6E-13 8.8E-18 119.7 11.3 81 68-153 4-84 (94)
264 1x4c_A Splicing factor, argini 99.5 3.2E-13 1.1E-17 122.4 12.2 80 160-246 12-97 (108)
265 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.8E-18 128.6 9.3 81 161-244 27-112 (127)
266 2lcw_A RNA-binding protein FUS 99.2 4.8E-15 1.6E-19 136.5 0.0 86 68-153 3-97 (116)
267 2hvz_A Splicing factor, argini 99.5 1.2E-13 4E-18 123.7 9.1 77 164-245 1-78 (101)
268 1fj7_A Nucleolin RBD1, protein 99.5 2.2E-14 7.5E-19 128.5 4.2 82 162-245 16-98 (101)
269 2dnq_A RNA-binding protein 4B; 99.5 1.9E-13 6.4E-18 119.6 10.1 77 161-245 6-83 (90)
270 2xs2_A Deleted in azoospermia- 99.5 7.5E-14 2.6E-18 125.2 7.4 82 160-244 6-88 (102)
271 2cpx_A Hypothetical protein FL 99.5 3.3E-14 1.1E-18 130.6 5.1 85 69-153 22-107 (115)
272 2la4_A Nuclear and cytoplasmic 99.4 1.1E-13 3.6E-18 124.0 7.9 78 67-150 22-100 (101)
273 2jvr_A Nucleolar protein 3; RN 99.4 5.5E-14 1.9E-18 127.3 6.0 79 68-150 24-104 (111)
274 2dgu_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 121.3 10.9 79 161-247 9-88 (103)
275 3d2w_A TAR DNA-binding protein 99.4 9.4E-14 3.2E-18 121.0 7.0 78 68-151 7-84 (89)
276 1x4c_A Splicing factor, argini 99.4 2.4E-13 8.2E-18 123.3 9.8 79 69-154 12-96 (108)
277 2lcw_A RNA-binding protein FUS 99.2 8.1E-15 2.8E-19 135.0 0.0 85 161-245 5-98 (116)
278 1x4f_A Matrin 3; structural ge 99.4 7.7E-14 2.6E-18 125.9 6.4 80 67-152 20-103 (112)
279 1x4g_A Nucleolysin TIAR; struc 99.4 1.6E-13 5.6E-18 124.6 8.6 80 68-153 21-101 (109)
280 2dnn_A RNA-binding protein 12; 99.4 2.2E-13 7.6E-18 123.0 9.2 78 161-241 14-92 (109)
281 1why_A Hypothetical protein ri 99.4 3.3E-13 1.1E-17 119.8 10.1 78 161-244 15-95 (97)
282 2dgt_A RNA-binding protein 30; 99.4 4.4E-13 1.5E-17 117.7 10.8 78 160-245 7-85 (92)
283 2fc8_A NCL protein; structure 99.4 1.4E-13 4.8E-18 123.4 7.6 84 67-153 10-94 (102)
284 1fjc_A Nucleolin RBD2, protein 99.4 2.2E-13 7.6E-18 120.6 8.6 80 160-244 13-93 (96)
285 1x4g_A Nucleolysin TIAR; struc 99.4 2.6E-13 9E-18 123.3 9.3 79 161-245 23-102 (109)
286 1why_A Hypothetical protein ri 99.4 1.7E-13 5.8E-18 121.7 7.8 79 68-152 13-94 (97)
287 2ytc_A PRE-mRNA-splicing facto 99.4 2.4E-13 8.1E-18 117.5 8.3 76 67-148 7-84 (85)
288 1wf1_A RNA-binding protein RAL 99.4 3.3E-13 1.1E-17 122.8 9.5 96 138-244 5-102 (110)
289 2lmi_A GRSF-1, G-rich sequence 99.4 1.3E-13 4.5E-18 124.7 6.7 80 161-242 9-92 (107)
290 2dnl_A Cytoplasmic polyadenyla 99.4 9.8E-14 3.4E-18 127.2 5.9 79 68-148 4-85 (114)
291 1sjr_A Polypyrimidine tract-bi 99.4 6.9E-13 2.4E-17 127.2 11.8 80 162-245 45-127 (164)
292 2e5j_A Methenyltetrahydrofolat 99.4 2.2E-13 7.4E-18 121.0 7.7 79 68-151 15-94 (97)
293 1nu4_A U1A RNA binding domain; 99.4 5.9E-14 2E-18 124.6 4.0 81 68-151 4-89 (97)
294 2ytc_A PRE-mRNA-splicing facto 99.4 4.9E-13 1.7E-17 115.5 9.7 75 160-240 9-85 (85)
295 2dnp_A RNA-binding protein 14; 99.4 2.4E-13 8.1E-18 118.9 7.7 78 67-152 4-82 (90)
296 3tyt_A Heterogeneous nuclear r 99.4 1.4E-13 4.6E-18 140.1 7.0 68 72-141 123-193 (205)
297 2j8a_A Histone-lysine N-methyl 99.4 2.4E-13 8.2E-18 122.7 7.7 78 164-241 3-95 (136)
298 2e5g_A U6 snRNA-specific termi 99.4 6.7E-13 2.3E-17 117.0 10.6 78 162-245 7-85 (94)
299 2cpj_A Non-POU domain-containi 99.4 5.4E-13 1.9E-17 118.9 10.0 79 160-244 12-91 (99)
300 2jvr_A Nucleolar protein 3; RN 99.4 2E-13 6.9E-18 123.6 7.2 77 162-242 27-105 (111)
301 1nu4_A U1A RNA binding domain; 99.4 1.5E-13 5.3E-18 121.9 6.4 81 161-244 6-91 (97)
302 2e5j_A Methenyltetrahydrofolat 99.4 3.5E-13 1.2E-17 119.6 8.6 79 160-243 16-95 (97)
303 2kvi_A Nuclear polyadenylated 99.4 2E-13 6.8E-18 120.9 6.9 78 68-153 6-85 (96)
304 1x4f_A Matrin 3; structural ge 99.4 3.4E-13 1.2E-17 121.7 8.4 79 161-245 23-105 (112)
305 1fjc_A Nucleolin RBD2, protein 99.4 8.7E-14 3E-18 123.3 4.5 80 68-152 12-92 (96)
306 2jvo_A Nucleolar protein 3; nu 99.4 2E-13 7E-18 123.6 7.0 79 66-152 25-104 (108)
307 2jvo_A Nucleolar protein 3; nu 99.4 2.8E-13 9.7E-18 122.6 8.0 78 160-245 28-106 (108)
308 2xnq_A Nuclear polyadenylated 99.4 3.1E-13 1.1E-17 119.9 8.0 78 66-151 16-95 (97)
309 2hgm_A HNRPF protein, heteroge 99.4 3.1E-13 1E-17 125.1 8.0 80 161-242 40-121 (126)
310 1wf0_A TDP-43, TAR DNA-binding 99.4 2.1E-13 7.3E-18 118.6 6.5 78 70-153 3-80 (88)
311 2dnp_A RNA-binding protein 14; 99.4 6.6E-13 2.3E-17 116.0 9.5 78 160-245 6-84 (90)
312 2cpj_A Non-POU domain-containi 99.4 3.9E-13 1.3E-17 119.8 8.0 79 68-152 11-90 (99)
313 1whx_A Hypothetical protein ri 99.4 4.4E-13 1.5E-17 122.1 8.5 76 162-243 9-85 (111)
314 2f3j_A RNA and export factor b 99.4 3.2E-13 1.1E-17 133.7 8.1 82 69-151 85-167 (177)
315 2voo_A Lupus LA protein; RNA-b 99.4 4.3E-13 1.5E-17 134.8 9.1 79 72-151 109-187 (193)
316 1whx_A Hypothetical protein ri 99.4 1.7E-13 5.8E-18 124.8 5.6 77 69-151 7-84 (111)
317 2dgu_A Heterogeneous nuclear r 99.4 4.5E-13 1.6E-17 120.3 8.3 78 68-153 7-85 (103)
318 2cqh_A IGF-II mRNA-binding pro 99.4 3.6E-13 1.2E-17 118.5 7.4 78 161-245 6-86 (93)
319 2xnq_A Nuclear polyadenylated 99.4 6.8E-13 2.3E-17 117.7 9.2 75 160-242 19-95 (97)
320 3lqv_A PRE-mRNA branch site pr 99.4 4.1E-13 1.4E-17 123.3 7.9 80 161-243 6-86 (115)
321 2cpd_A Apobec-1 stimulating pr 99.4 1.5E-12 5E-17 116.1 11.2 77 160-244 12-91 (99)
322 2dgt_A RNA-binding protein 30; 99.4 4.5E-13 1.6E-17 117.6 7.7 79 67-153 5-84 (92)
323 2la4_A Nuclear and cytoplasmic 99.4 3E-13 1E-17 121.0 6.6 75 162-242 26-101 (101)
324 2cqh_A IGF-II mRNA-binding pro 99.4 2.4E-13 8.1E-18 119.7 5.5 79 68-153 4-85 (93)
325 2kvi_A Nuclear polyadenylated 99.4 5.2E-13 1.8E-17 118.3 7.1 76 161-244 8-85 (96)
326 2adc_A Polypyrimidine tract-bi 99.4 6.5E-13 2.2E-17 137.9 9.0 121 25-150 32-227 (229)
327 3d2w_A TAR DNA-binding protein 99.4 8.2E-13 2.8E-17 115.0 8.2 79 160-244 8-86 (89)
328 3egn_A RNA-binding protein 40; 99.4 2.2E-13 7.7E-18 130.3 5.0 87 160-246 42-134 (143)
329 1x5p_A Negative elongation fac 99.4 2.5E-12 8.6E-17 114.0 11.3 78 161-246 13-91 (97)
330 2dha_A FLJ20171 protein; RRM d 99.4 5E-13 1.7E-17 123.4 6.9 80 162-242 22-105 (123)
331 1wf1_A RNA-binding protein RAL 99.4 7.3E-13 2.5E-17 120.5 7.9 74 70-151 25-100 (110)
332 2e44_A Insulin-like growth fac 99.4 9.5E-13 3.3E-17 116.5 8.4 79 161-243 13-93 (96)
333 2i2y_A Fusion protein consists 99.4 6.1E-13 2.1E-17 128.4 7.3 80 67-151 68-148 (150)
334 2cpd_A Apobec-1 stimulating pr 99.4 1.7E-12 5.7E-17 115.7 9.5 78 68-153 11-91 (99)
335 2voo_A Lupus LA protein; RNA-b 99.4 2.1E-12 7.2E-17 129.8 11.4 117 123-242 63-187 (193)
336 2cq2_A Hypothetical protein LO 99.4 1.1E-12 3.7E-17 118.4 8.2 78 161-244 23-108 (114)
337 3egn_A RNA-binding protein 40; 99.4 1.4E-13 4.8E-18 131.7 2.6 84 69-152 42-131 (143)
338 2f3j_A RNA and export factor b 99.4 1.1E-12 3.6E-17 129.9 8.9 83 160-243 85-168 (177)
339 1qm9_A Polypyrimidine tract-bi 99.4 7.8E-13 2.7E-17 134.0 8.2 75 71-150 119-196 (198)
340 2dnl_A Cytoplasmic polyadenyla 99.4 1E-12 3.5E-17 120.3 8.2 79 162-242 7-88 (114)
341 2diu_A KIAA0430 protein; struc 99.3 1.6E-12 5.6E-17 110.9 8.2 74 70-153 6-86 (96)
342 3zzy_A Polypyrimidine tract-bi 99.3 3.4E-12 1.2E-16 117.9 11.0 84 162-250 27-114 (130)
343 2cq2_A Hypothetical protein LO 99.3 9.2E-13 3.2E-17 118.8 7.0 78 67-150 20-105 (114)
344 1x5p_A Negative elongation fac 99.3 2.1E-12 7.4E-17 114.5 9.1 78 68-153 11-89 (97)
345 2e44_A Insulin-like growth fac 99.3 9E-13 3.1E-17 116.7 6.5 78 70-151 13-92 (96)
346 1wg1_A KIAA1579 protein, homol 99.3 5.2E-13 1.8E-17 116.2 4.7 74 70-150 3-77 (88)
347 2diu_A KIAA0430 protein; struc 99.3 3E-12 1E-16 109.3 9.3 74 163-246 9-88 (96)
348 2hzc_A Splicing factor U2AF 65 99.3 1.4E-12 4.7E-17 113.1 7.2 72 70-147 4-86 (87)
349 1wg1_A KIAA1579 protein, homol 99.3 1.6E-12 5.4E-17 113.1 7.4 74 162-242 4-78 (88)
350 1wf0_A TDP-43, TAR DNA-binding 99.3 1.5E-12 5.3E-17 113.1 7.1 78 162-245 4-81 (88)
351 1sjr_A Polypyrimidine tract-bi 99.3 2.8E-12 9.7E-17 123.0 9.4 78 71-152 45-125 (164)
352 3beg_B Splicing factor, argini 99.3 3.2E-12 1.1E-16 117.2 8.3 75 161-242 14-94 (115)
353 2e5i_A Heterogeneous nuclear r 99.3 1.2E-11 4E-16 113.9 12.0 77 164-246 26-106 (124)
354 3pgw_S U1-70K; protein-RNA com 99.3 2.7E-12 9.1E-17 145.3 9.2 82 70-151 100-182 (437)
355 3beg_B Splicing factor, argini 99.3 1.8E-12 6.2E-17 118.8 6.2 70 70-146 14-84 (115)
356 2pe8_A Splicing factor 45; RRM 99.3 6.6E-12 2.3E-16 112.6 9.4 80 162-241 7-93 (105)
357 2pe8_A Splicing factor 45; RRM 99.3 5.1E-12 1.7E-16 113.3 8.1 81 70-150 6-93 (105)
358 3zzy_A Polypyrimidine tract-bi 99.3 5.8E-12 2E-16 116.3 8.4 75 72-151 28-106 (130)
359 2bz2_A Negative elongation fac 99.2 7.7E-12 2.6E-16 115.5 7.2 76 69-152 36-112 (121)
360 2hzc_A Splicing factor U2AF 65 99.2 1.2E-11 4.1E-16 107.2 7.9 71 161-238 4-86 (87)
361 2bz2_A Negative elongation fac 99.2 1.1E-11 3.6E-16 114.6 7.7 76 161-244 37-113 (121)
362 2e5i_A Heterogeneous nuclear r 99.2 1.7E-11 5.9E-16 112.8 8.7 73 74-152 27-103 (124)
363 3u1l_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.6E-16 125.9 9.0 107 129-243 102-230 (240)
364 3u1l_A PRE-mRNA-splicing facto 99.2 9.9E-12 3.4E-16 127.5 6.3 82 65-152 127-230 (240)
365 2dit_A HIV TAT specific factor 99.1 2.1E-10 7.2E-15 104.4 11.5 80 160-243 12-103 (112)
366 1jmt_A Splicing factor U2AF 35 99.1 1.2E-11 4.1E-16 110.8 2.1 72 76-148 19-103 (104)
367 3v4m_A Splicing factor U2AF 65 99.1 8.9E-11 3E-15 105.3 7.6 80 162-241 4-96 (105)
368 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.8E-10 1.3E-14 99.8 11.1 78 70-153 8-92 (100)
369 2dit_A HIV TAT specific factor 99.1 1.9E-10 6.3E-15 104.8 8.8 82 67-152 10-103 (112)
370 1jmt_A Splicing factor U2AF 35 99.1 3.1E-11 1.1E-15 108.1 3.4 72 168-240 20-104 (104)
371 4fzv_B Mterf domain-containing 99.1 1.4E-09 4.7E-14 97.7 13.9 181 696-890 35-225 (239)
372 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.8E-10 2.7E-14 97.7 11.6 66 173-244 27-92 (100)
373 3ue2_A Poly(U)-binding-splicin 99.1 2.1E-10 7.1E-15 104.9 8.1 80 162-241 19-108 (118)
374 3ue2_A Poly(U)-binding-splicin 99.1 1.3E-10 4.4E-15 106.2 5.9 80 71-150 19-108 (118)
375 3v4m_A Splicing factor U2AF 65 99.0 1.4E-10 4.8E-15 104.0 5.6 81 70-150 3-96 (105)
376 3tht_A Alkylated DNA repair pr 98.9 1E-09 3.5E-14 118.7 7.4 76 67-148 13-96 (345)
377 3tht_A Alkylated DNA repair pr 98.9 3.3E-09 1.1E-13 114.7 8.7 75 160-240 15-97 (345)
378 3s6e_A RNA-binding protein 39; 98.8 7E-09 2.4E-13 94.0 7.6 76 162-241 6-92 (114)
379 3s6e_A RNA-binding protein 39; 98.7 1.4E-08 4.7E-13 92.0 5.6 75 71-149 6-91 (114)
380 1owx_A Lupus LA protein, SS-B, 98.6 7.6E-08 2.6E-12 87.2 9.3 75 160-240 15-94 (121)
381 2dnr_A Synaptojanin-1; RRM dom 98.6 6.1E-08 2.1E-12 82.1 7.0 75 68-150 3-85 (91)
382 2dnr_A Synaptojanin-1; RRM dom 98.6 9.8E-08 3.4E-12 80.8 7.7 73 161-242 5-86 (91)
383 1owx_A Lupus LA protein, SS-B, 98.6 4.1E-08 1.4E-12 89.0 5.7 74 68-147 14-92 (121)
384 1ufw_A Synaptojanin 2; RNP dom 98.4 2E-07 7E-12 79.2 5.1 77 65-149 8-93 (95)
385 3dxb_A Thioredoxin N-terminall 98.3 8.6E-07 2.9E-11 91.0 7.9 68 174-241 140-212 (222)
386 1ufw_A Synaptojanin 2; RNP dom 98.3 5E-07 1.7E-11 76.8 4.1 72 160-240 12-93 (95)
387 3dxb_A Thioredoxin N-terminall 98.2 1.2E-06 4.2E-11 89.8 5.5 99 38-149 103-211 (222)
388 4fzv_B Mterf domain-containing 98.0 5E-05 1.7E-09 68.4 11.3 135 531-673 43-182 (239)
389 2dhx_A Poly (ADP-ribose) polym 97.8 0.00014 4.8E-09 62.6 9.6 91 68-176 4-99 (104)
390 2l9w_A U4/U6 snRNA-associated- 97.5 0.00022 7.6E-09 61.7 7.5 71 162-238 20-96 (117)
391 2l9w_A U4/U6 snRNA-associated- 97.2 0.00078 2.7E-08 58.3 7.2 73 70-148 19-97 (117)
392 1wey_A Calcipressin 1; structu 97.1 0.0016 5.4E-08 56.4 8.3 73 163-241 5-83 (104)
393 2dhx_A Poly (ADP-ribose) polym 96.9 0.019 6.6E-07 49.4 13.0 73 162-242 7-84 (104)
394 1whv_A Poly(A)-specific ribonu 96.2 0.0099 3.4E-07 50.5 6.5 57 70-134 13-69 (100)
395 1wey_A Calcipressin 1; structu 95.7 0.026 8.9E-07 48.8 7.1 73 72-150 5-83 (104)
396 1whv_A Poly(A)-specific ribonu 95.4 0.046 1.6E-06 46.4 7.5 55 163-226 16-70 (100)
397 1wwh_A Nucleoporin 35, nucleop 95.3 0.034 1.2E-06 49.5 6.8 71 70-147 22-93 (119)
398 3ctr_A Poly(A)-specific ribonu 95.2 0.024 8.2E-07 48.3 5.3 53 74-134 7-59 (101)
399 1wwh_A Nucleoporin 35, nucleop 95.2 0.066 2.3E-06 47.7 8.4 73 161-240 22-95 (119)
400 1uw4_A UPF3X; nonsense mediate 95.0 0.094 3.2E-06 44.5 8.5 77 164-240 2-86 (91)
401 1uw4_A UPF3X; nonsense mediate 93.9 0.13 4.3E-06 43.8 6.7 62 73-134 2-65 (91)
402 3ctr_A Poly(A)-specific ribonu 93.5 0.062 2.1E-06 45.8 4.1 55 163-226 6-60 (101)
403 3pq1_A Poly(A) RNA polymerase; 93.4 0.052 1.8E-06 60.6 4.6 58 71-134 52-109 (464)
404 2l08_A Regulator of nonsense t 92.9 0.32 1.1E-05 41.6 7.7 78 163-240 9-94 (97)
405 3pq1_A Poly(A) RNA polymerase; 90.9 0.1 3.5E-06 58.2 3.1 57 162-224 52-108 (464)
406 3p3d_A Nucleoporin 53; structu 90.4 0.39 1.3E-05 43.3 5.7 78 163-241 7-98 (132)
407 3p3d_A Nucleoporin 53; structu 90.2 0.18 6E-06 45.6 3.3 76 72-148 7-96 (132)
408 3ugm_A TAL effector avrbs3/PTH 85.7 8.7 0.0003 43.9 13.7 211 487-714 345-568 (1047)
409 3ugm_A TAL effector avrbs3/PTH 84.0 8.1 0.00028 44.2 12.6 144 567-719 355-505 (1047)
410 1oqy_A HHR23A, UV excision rep 82.8 2 6.9E-05 46.5 7.2 119 587-725 166-288 (368)
411 2l08_A Regulator of nonsense t 82.2 0.68 2.3E-05 39.5 2.5 63 72-134 9-73 (97)
412 4hpz_A Dtale2; DNA binding pro 80.1 64 0.0022 34.1 16.9 208 496-714 140-354 (463)
413 3ff5_A PEX14P, peroxisomal bio 80.1 3.6 0.00012 30.8 5.5 25 775-799 30-54 (54)
414 4ae4_A Ubiquitin-associated pr 77.2 14 0.00049 32.7 9.6 24 522-545 9-32 (118)
415 4hpz_A Dtale2; DNA binding pro 74.3 19 0.00064 38.0 10.8 142 567-714 106-252 (463)
416 2w84_A Peroxisomal membrane pr 69.1 8.8 0.0003 30.3 5.3 25 775-799 35-59 (70)
417 3ff5_A PEX14P, peroxisomal bio 68.3 6.2 0.00021 29.5 4.2 35 646-684 19-53 (54)
418 4ae4_A Ubiquitin-associated pr 67.3 28 0.00095 30.8 9.1 82 592-683 11-98 (118)
419 3iot_A Maltose-binding protein 59.8 2 6.7E-05 48.2 0.2 13 214-226 272-285 (449)
420 1oqy_A HHR23A, UV excision rep 54.8 11 0.00038 40.6 5.0 42 557-603 168-209 (368)
421 3v6t_A DHAX3; tandem repeats, 53.6 2.3E+02 0.008 30.2 16.3 311 486-830 88-414 (499)
422 2w84_A Peroxisomal membrane pr 52.6 15 0.00051 29.0 4.0 35 646-684 24-58 (70)
423 3d45_A Poly(A)-specific ribonu 51.2 24 0.00083 39.9 7.3 55 163-226 440-494 (507)
424 3h0g_A DNA-directed RNA polyme 49.9 3.4 0.00012 53.5 0.0 6 166-171 1434-1439(1752)
425 3v6t_A DHAX3; tandem repeats, 49.7 1.6E+02 0.0054 31.5 12.3 297 496-829 65-379 (499)
426 1ify_A HHR23A, UV excision rep 49.3 21 0.00071 26.1 4.2 40 773-819 6-45 (49)
427 3h0g_A DNA-directed RNA polyme 45.3 4.5 0.00015 52.4 0.0 7 88-94 1337-1343(1752)
428 3d45_A Poly(A)-specific ribonu 44.1 24 0.00084 39.9 5.9 52 74-134 442-493 (507)
429 1twf_A B220, DNA-directed RNA 41.9 5.4 0.00018 51.7 0.0 6 99-104 1279-1284(1733)
430 2cos_A Serine/threonine protei 39.2 27 0.00092 25.9 3.3 18 780-797 14-31 (54)
431 3dfg_A Xcrecx, regulatory prot 38.5 1E+02 0.0035 28.7 8.4 20 592-611 138-157 (162)
432 2ekk_A UBA domain from E3 ubiq 37.7 32 0.0011 24.8 3.6 35 777-819 11-45 (47)
433 1veg_A NEDD8 ultimate buster-1 37.3 48 0.0016 27.2 5.0 45 776-827 30-74 (83)
434 2oo9_A E3 ubiquitin-protein li 36.6 31 0.0011 24.6 3.1 24 774-797 3-26 (46)
435 2qsf_X RAD23, UV excision repa 35.2 47 0.0016 31.3 5.3 41 677-725 37-77 (171)
436 2juj_A E3 ubiquitin-protein li 34.7 41 0.0014 25.0 3.6 25 773-797 5-29 (56)
437 2ooa_A E3 ubiquitin-protein li 34.4 39 0.0013 24.9 3.5 24 775-798 11-34 (52)
438 2g3q_A Protein YBL047C; endocy 34.2 29 0.00099 24.4 2.9 36 777-819 6-41 (43)
439 2d9s_A CBL E3 ubiquitin protei 33.9 40 0.0014 25.0 3.5 24 775-798 9-32 (53)
440 3idw_A Actin cytoskeleton-regu 31.4 47 0.0016 26.3 3.8 17 666-682 42-58 (72)
441 2ooa_A E3 ubiquitin-protein li 30.2 93 0.0032 22.9 4.9 41 588-636 10-50 (52)
442 4fqn_A Malcavernin; helical do 30.0 5.2 0.00018 33.5 -1.9 44 424-467 52-96 (98)
443 1z96_A DNA-damage, UBA-domain 29.7 53 0.0018 22.3 3.6 24 776-799 5-28 (40)
444 3idw_A Actin cytoskeleton-regu 27.7 48 0.0017 26.2 3.3 54 744-797 4-59 (72)
445 2knz_A Ubiquilin-4; cytoplasm, 27.3 1E+02 0.0036 22.7 5.0 44 587-638 9-53 (53)
446 3d5l_A Regulatory protein RECX 27.0 2.6E+02 0.009 27.3 9.7 26 587-612 180-205 (221)
447 1vg5_A RSGI RUH-014, rhomboid 26.8 42 0.0014 26.8 2.9 39 775-820 29-67 (73)
448 1wji_A Tudor domain containing 24.7 54 0.0018 25.3 3.1 38 776-820 10-47 (63)
449 2lbc_A Ubiquitin carboxyl-term 24.7 1.1E+02 0.0039 27.0 5.8 35 591-633 80-114 (126)
450 3c1d_A Protein ORAA, regulator 24.7 1.4E+02 0.0049 27.5 6.8 61 516-580 44-105 (159)
451 1wj7_A Hypothetical protein (R 24.6 1.1E+02 0.0039 26.1 5.3 47 767-820 31-78 (104)
452 3e3v_A Regulatory protein RECX 23.2 2.1E+02 0.007 27.0 7.7 21 591-611 141-161 (177)
453 2xvc_A ESCRT-III, SSO0910; cel 22.4 1E+02 0.0035 23.2 4.0 46 787-858 10-55 (59)
454 3e3v_A Regulatory protein RECX 22.3 4.8E+02 0.017 24.4 12.2 24 775-798 139-162 (177)
455 2zvv_Y Cyclin-dependent kinase 22.2 20 0.00068 21.7 0.1 18 395-412 4-21 (26)
456 1vg5_A RSGI RUH-014, rhomboid 21.8 91 0.0031 24.9 3.9 35 591-633 31-65 (73)
457 4e9m_A Nucleotide-binding olig 21.5 55 0.0019 29.6 2.9 75 398-472 44-123 (144)
458 1wiv_A UBP14, ubiquitin-specif 21.3 77 0.0026 25.3 3.5 39 776-821 30-68 (73)
459 2dak_A Ubiquitin carboxyl-term 21.0 81 0.0028 24.2 3.5 41 775-822 9-49 (63)
460 2prr_A Alkylhydroperoxidase AH 20.4 1.7E+02 0.0058 27.9 6.6 40 778-826 145-184 (197)
461 2cpw_A CBL-interacting protein 20.3 95 0.0032 24.0 3.7 39 777-821 21-59 (64)
462 4gfj_A Topoisomerase V; helix- 20.1 64 0.0022 34.6 3.5 26 697-723 548-573 (685)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=2.1e-43 Score=389.79 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=260.8
Q ss_pred hHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHcCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHh
Q 045707 487 LENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKS 566 (901)
Q Consensus 487 ~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~ 566 (901)
-+.+.+|.+.|++. ..+.+.+|.++..+.+...++++||+++|++.++|.+++.++|.+|.+++ +++.|+
T Consensus 20 ~~~v~~L~s~Gl~~---~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~------ 89 (343)
T 3mva_O 20 EDLLKNLLTMGVDI---DMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKR------ 89 (343)
T ss_dssp CCHHHHHHHHTCCH---HHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHH------
T ss_pred HHHHHHHHHcCCCH---HHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHH------
Confidence 34588899999984 45566778888888888899999999999999999999999999999885 556555
Q ss_pred cCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCC-chHHHHHHHHHhcCCChHHHHHH
Q 045707 567 MEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSG-SIALTMIGLLLKFGSTRNELCSI 645 (901)
Q Consensus 567 lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~-~~l~p~~~fl~~lG~s~~~i~~~ 645 (901)
++||+++|+++++|+++|.++|.+|..+.+ +++.|+++||+++|++.++|+++
T Consensus 90 --------------------------l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~l 143 (343)
T 3mva_O 90 --------------------------WDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL 143 (343)
T ss_dssp --------------------------HHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred --------------------------HHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHH
Confidence 556666889999999999999996666666 49999999999999999999999
Q ss_pred HhhCCcceehhccccchHHHHHHHHhhhc------hhHHHHHHHhCccccccc--cccchHHHHH-HcCCchhHHhHHHH
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFLFEIKMK------VDEIGKILRCHFLLVGSC--TLKKTNTILA-YLNVGKKRLCEYIQ 716 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL~~~g~~------~~~i~~~l~~~P~il~~~--~~~~~~~~l~-~lg~~~~~l~~ii~ 716 (901)
+.++|++|+++++++ +++++||+++|++ .+.|.+++.++|.+|+.+ .++..+.+++ .+|++.+++..++.
T Consensus 144 l~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~ 222 (343)
T 3mva_O 144 LTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLIC 222 (343)
T ss_dssp HHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999999999977 9999999999986 778999999999999864 5566677777 48888877777766
Q ss_pred hCc-hHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHHhcccHHHHHHHHHHH----HcCCCHHH
Q 045707 717 ENP-LELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLV----NAGLDRKD 791 (901)
Q Consensus 717 ~~P-~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~----~~G~s~~~ 791 (901)
..| .++.. + .+.|+++++|+. ++||+.+|
T Consensus 223 ~~~~~~l~~-------------s---------------------------------~~~l~~~~~~l~e~~~~lG~s~~e 256 (343)
T 3mva_O 223 GPGAEILDL-------------S---------------------------------NDYARRSYANIKEKLFSLGCTEEE 256 (343)
T ss_dssp TTTGGGGGC-------------C---------------------------------TTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred cCChHHhhc-------------c---------------------------------HHHHHHHHHHHHHHHHHcCCCHHH
Confidence 644 34432 1 123566665555 79999999
Q ss_pred HHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCcccccccchhHHHHHHHHHHHHcCCCCCCCCcc--hhhc
Q 045707 792 VCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWIDGRLASS--TLIA 869 (901)
Q Consensus 792 v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~~~~~~L~~~g~~~~~~sl~--~~l~ 869 (901)
|..||+++|+||++|.|+|++|++||++ ||++.++|+++|++|+||+|||+|||.+ |+++|+ ++++. +||+
T Consensus 257 v~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~~~---L~~~g~---~~~~~~~~~l~ 329 (343)
T 3mva_O 257 VQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRIKE---LVNAGC---NLSTLNITLLS 329 (343)
T ss_dssp HHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHHHH---HHTTTC---CSSSSCGGGGG
T ss_pred HHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHHHH---HHHCCC---CCCCCcchhhc
Confidence 9999999999999999999999999999 9999999999999999999999999965 999998 67777 9999
Q ss_pred ccHHHHHHHhcc
Q 045707 870 YSNKTFMQQFVN 881 (901)
Q Consensus 870 ~sd~~F~~~~v~ 881 (901)
+||++|.++|-+
T Consensus 330 ~s~~~F~~~~~~ 341 (343)
T 3mva_O 330 WSKKRYEAKLKK 341 (343)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 999999999854
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.6e-42 Score=370.87 Aligned_cols=258 Identities=19% Similarity=0.330 Sum_probs=231.1
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCC
Q 045707 522 QSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGC 601 (901)
Q Consensus 522 ~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~ 601 (901)
.++|++|.++|++.++|.+....+|.||.+++++++.|+ ++||.++|+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~--------------------------------l~fL~~lG~ 53 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQM--------------------------------LLFLKDVGI 53 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHH--------------------------------HHHHHHHTC
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHH--------------------------------HHHHHHcCC
Confidence 477888889999999888888888888888887777666 555555888
Q ss_pred ChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHH-HHhhhchhHHHH
Q 045707 602 SDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFL-FEIKMKVDEIGK 680 (901)
Q Consensus 602 s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL-~~~g~~~~~i~~ 680 (901)
+.++|+++++++|.+|.+++++ +.|+++||+++|++.++|++++.++|++|+++++ +++|+++|| +++|++.+++.+
T Consensus 54 ~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ 131 (270)
T 3m66_A 54 EDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRD 131 (270)
T ss_dssp CGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence 8889999999999999999997 9999999999999999999999999999999999 599999999 689999999999
Q ss_pred HHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccChHH
Q 045707 681 ILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNE 760 (901)
Q Consensus 681 ~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~ 760 (901)
++.++|.+++.+.
T Consensus 132 ll~~~P~il~~s~------------------------------------------------------------------- 144 (270)
T 3m66_A 132 LVVRLPRLLTGSL------------------------------------------------------------------- 144 (270)
T ss_dssp HHHHSGGGGTSCS-------------------------------------------------------------------
T ss_pred HHHhCCcceeech-------------------------------------------------------------------
Confidence 9999999986441
Q ss_pred HHHHHHHHhcccHHHHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCccccccc
Q 045707 761 MAKALKHFRGRGAELQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTE 839 (901)
Q Consensus 761 ~~~a~~~~~~~~~~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysl 839 (901)
+.++++++++. ++||+.+||..||+++|+||++|.++|++|++||+++||++.++|++||++|+||+
T Consensus 145 ------------e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sl 212 (270)
T 3m66_A 145 ------------EPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL 212 (270)
T ss_dssp ------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCH
T ss_pred ------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCH
Confidence 12347788765 99999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcCCCCCC---CCcchhhcccHHHHHHHhcccCCChHHHHHHHHh
Q 045707 840 ERIKLRFLMYNWLKDEGWIDGR---LASSTLIAYSNKTFMQQFVNRHPKGPEVWQTFKK 895 (901)
Q Consensus 840 eri~pR~~~~~~L~~~g~~~~~---~sl~~~l~~sd~~F~~~~v~~~~~~~~~~~~~~~ 895 (901)
|||+|||+++++|.++|+...+ ++|++++.+||++|+++|++.++++ |+.|++
T Consensus 213 eri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ee---y~~f~k 268 (270)
T 3m66_A 213 FKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQD---FEKFLK 268 (270)
T ss_dssp HHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHH---HHHHHT
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHH---HHHHHh
Confidence 9999999999999999998765 7888899999999999999999874 555544
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=303.53 Aligned_cols=215 Identities=14% Similarity=0.267 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHH
Q 045707 588 MMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLF 667 (901)
Q Consensus 588 ~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~f 667 (901)
++..++++|.++||++++|+++++++|.++ ..++.+++.||..+|++.++|++||.++|+||+++++ +|+++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il----~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGAS----LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCC----HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccc----hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence 345689999999999999999999999996 4578999999999999999999999999999999997 79999999
Q ss_pred HHHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHH
Q 045707 668 LFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTK 747 (901)
Q Consensus 668 L~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~ 747 (901)
|+++|++.++|.+++.++|++|+.+.
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~------------------------------------------------------ 145 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQ------------------------------------------------------ 145 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCH------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHHhCchhhccCh------------------------------------------------------
Confidence 99999999999999999999974321
Q ss_pred hhhccCcccChHHHHHHHHHHhcccHHHHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCcc
Q 045707 748 FLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLS 826 (901)
Q Consensus 748 ~L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~ 826 (901)
+.++.++.+|. ++||+.++|..||+++|+||++|.++|++|++||+++||++++
T Consensus 146 -------------------------e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~ 200 (335)
T 4fp9_B 146 -------------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHP 200 (335)
T ss_dssp -------------------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHH
T ss_pred -------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHH
Confidence 22446777776 8999999999999999999999999999999999999999999
Q ss_pred ccccCCcccccccchhHHHHHHHHHHHHcCCC----------CCCCCcchhhcccHHHHHHHhcccCCChHHHH
Q 045707 827 FLVSFPSYFNYTEERIKLRFLMYNWLKDEGWI----------DGRLASSTLIAYSNKTFMQQFVNRHPKGPEVW 890 (901)
Q Consensus 827 ~i~~~P~~L~ysleri~pR~~~~~~L~~~g~~----------~~~~sl~~~l~~sd~~F~~~~v~~~~~~~~~~ 890 (901)
+|++ |+||+||++||+|||.+ |+..|.. .++++|..++.+||+.|+.++.+.+.+..+.|
T Consensus 201 eIvk-P~~l~ySLeRIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F 270 (335)
T 4fp9_B 201 DIVK-SEYLQYSLTKIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVF 270 (335)
T ss_dssp HHHH-TTGGGSCHHHHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHH
T ss_pred Hccc-cchhhccHHHHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHH
Confidence 9997 99999999999999999 6666654 23568999999999999999999988876666
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=99.97 E-value=3.8e-32 Score=299.84 Aligned_cols=306 Identities=14% Similarity=0.189 Sum_probs=248.9
Q ss_pred CCchhhhhcCCCCCCCCCCCCCCcccccchhhHhHhHHHHhhcCccCchhhhHHhhchhhcccChhHHHHHHHHHHHcCC
Q 045707 454 EFEPFFESLGLKPCEYSPFLPLNLMFLSDDELLLENYHVLCNYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEMLGL 533 (901)
Q Consensus 454 ~~~~f~es~G~~~~~~~~~~~~~~~~l~d~~~~~~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~lG~ 533 (901)
+.-.||.|.|++...+....|. +++.+.....+.+.+|.++|++.++|++|+.++|.++.++.+.|.++++||+++|+
T Consensus 21 ~~v~~L~s~Gl~~~~~~~~~p~--l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~ 98 (343)
T 3mva_O 21 DLLKNLLTMGVDIDMARKRQPG--VFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVT 98 (343)
T ss_dssp CHHHHHHHHTCCHHHHHHHCGG--GGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHcCCCHHHHHHhCch--hhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCC
Confidence 3445889999998887665553 34444445567789999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhhhcCceeeecCCc-hhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhHhhc
Q 045707 534 SQSFISKVIVCSPYLLIGDVN-TEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGLIRQ 612 (901)
Q Consensus 534 ~~~~i~~~v~~~P~lL~~~~~-~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~li~~ 612 (901)
+.++|.+++.++|.+|.++.+ .++.|. ++||+++|++.++|++++.+
T Consensus 99 s~~~i~~il~~~P~iLl~s~~~~~l~p~--------------------------------v~fL~~lGl~~~~i~~ll~~ 146 (343)
T 3mva_O 99 SDLEIVNILERSPESFFRSNNNLNLENN--------------------------------IKFLYSVGLTRKCLCRLLTN 146 (343)
T ss_dssp CHHHHHHHHHHCSHHHHSCCCHHHHHHH--------------------------------HHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHhCCChHhhHHHH--------------------------------HHHHHHhCCCHHHHHHHHHh
Confidence 999999999999996655554 356554 55666688888889999999
Q ss_pred CCCeEeeCCCchHHHHHHHHHhcCCC------hHHHHHHHhhCCcceehhccccchHHHHHHHH-hhhchhHHHHHHHhC
Q 045707 613 HPGLLFEGSGSIALTMIGLLLKFGST------RNELCSIFLQFPQIEVRKFLLNLNQCLLFLFE-IKMKVDEIGKILRCH 685 (901)
Q Consensus 613 ~P~lL~~~~~~~l~p~~~fl~~lG~s------~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~-~g~~~~~i~~~l~~~ 685 (901)
+|++|++++++. ++++++|+++|++ .+.|.+++.++|.+|+++ +++++++++||++ +|++.+++.+++.+.
T Consensus 147 ~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~ 224 (343)
T 3mva_O 147 APRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGP 224 (343)
T ss_dssp CGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred CChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999998855 9999999977764 778999999999999999 7799999999984 999999999988775
Q ss_pred c-cccccc--cccchH----HHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccCh
Q 045707 686 F-LLVGSC--TLKKTN----TILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENS 758 (901)
Q Consensus 686 P-~il~~~--~~~~~~----~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~ 758 (901)
| .+++.+ .++..+ .++..+|++.+++..++.++|.+|...
T Consensus 225 ~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s--------------------------------- 271 (343)
T 3mva_O 225 GAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA--------------------------------- 271 (343)
T ss_dssp TGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSC---------------------------------
T ss_pred ChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhccc---------------------------------
Confidence 4 666643 233333 334478999999999999999998751
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCcccccc
Q 045707 759 NEMAKALKHFRGRGAELQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYT 838 (901)
Q Consensus 759 ~~~~~a~~~~~~~~~~l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ys 838 (901)
.+.|++|++||.++|++.++|. ++|++|+||.|+|++|++||.+ .|+..+. .+-.+|+.|
T Consensus 272 -------------~~~l~~k~~fl~~mg~~~~~i~----~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~l~~s 331 (343)
T 3mva_O 272 -------------EKKFNDKIDCLMEENISISQII----ENPRVLDSSISTLKSRIKELVN-AGCNLST--LNITLLSWS 331 (343)
T ss_dssp -------------HHHHHHHHHHHHTTTCCHHHHH----HSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGGGGSC
T ss_pred -------------HHHHHHHHHHHHHcCCCHHHHH----hCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--CcchhhcCC
Confidence 1337899999999999998875 7999999999999999999988 6986652 223888888
Q ss_pred cchhHHHHHH
Q 045707 839 EERIKLRFLM 848 (901)
Q Consensus 839 leri~pR~~~ 848 (901)
-++-.-||.-
T Consensus 332 ~~~F~~~~~~ 341 (343)
T 3mva_O 332 KKRYEAKLKK 341 (343)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7666666643
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2e-31 Score=271.38 Aligned_cols=181 Identities=28% Similarity=0.491 Sum_probs=154.2
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
......++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.++..+.|+.+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 34456889999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
++...............++|||+|||.++|+++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~ 167 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 167 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCC
Confidence 98765444433344556899999999999999999999999999999999999899999999999999999999999854
Q ss_pred CCcCCcEEEEEeccCCCCCCC
Q 045707 227 KTLGGRTIIVKLADTHKGKPP 247 (901)
Q Consensus 227 ~~i~g~~l~V~~a~~~~~~~~ 247 (901)
..++|+.|.|.+|.++.....
T Consensus 168 ~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 168 HTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp CEETTEECEEEECC-------
T ss_pred cEECCEEEEEEecCChhHhcc
Confidence 569999999999988765543
No 6
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.5e-30 Score=282.46 Aligned_cols=216 Identities=16% Similarity=0.219 Sum_probs=171.7
Q ss_pred CCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-------------------chh---HHhhh---------ccCCCCCCC
Q 045707 25 SSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-------------------SIA---EEIKS---------VASADPVHR 73 (901)
Q Consensus 25 ~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-------------------~~~---~~~~~---------~~~~~~~~~ 73 (901)
.....+||++|+.++++++|.++|+++|.+.. ... ..+.. ........+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCC
Confidence 33779999999999999999999999997621 000 01100 011113578
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC-Cccccccccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNLACEG 151 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~v~~a~~~ 151 (901)
+|||+|||.++|+++|+++|++|| .|.+|+++.++ .|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++...
T Consensus 119 ~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 119 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999999 99999999987 488999999999999999999995 478899999999998765
Q ss_pred CCCcCC-CCccccceEEEcCCCCC-CcHHHHHhhhccCCceeEeeeeccCC-CCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 152 LSGVSA-VPDLAQRKLYIGGLSPE-VTTEVLLNFFGRHGEIEEGSVAYDKD-TNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 152 ~~~~~~-~~~~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...... ......++|||+|||.+ +|+++|+++|++||.|..+++..+.. ||.++|||||+|.+.++|.+|+ .+|+.
T Consensus 198 ~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 198 EKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp ---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred cccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 443332 34456789999999999 99999999999999999999999876 6999999999999999999999 99976
Q ss_pred -cCCcEEEEEeccCC
Q 045707 229 -LGGRTIIVKLADTH 242 (901)
Q Consensus 229 -i~g~~l~V~~a~~~ 242 (901)
++|++|.|.||.++
T Consensus 277 ~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 277 LLGNREISVSLADKK 291 (292)
T ss_dssp EETTEEEEEEECCCC
T ss_pred EECCcEEEEEEecCC
Confidence 99999999999875
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.6e-31 Score=271.67 Aligned_cols=169 Identities=25% Similarity=0.358 Sum_probs=150.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||+++|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++|++.+ +..+.|+.+.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999876 56799999999887
Q ss_pred cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 149 CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 149 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...... .....++|||+|||.++|+++|+++|++||.|..+++++|. +.++|||||+|.+.++|.+|++.||+.
T Consensus 93 ~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 93 QRDPSL----RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CCCTHH----HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccc----cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 543221 12245789999999999999999999999999999999985 458999999999999999999999976
Q ss_pred -cCCcEEEEEeccCCCC
Q 045707 229 -LGGRTIIVKLADTHKG 244 (901)
Q Consensus 229 -i~g~~l~V~~a~~~~~ 244 (901)
++|++|.|.+|.++..
T Consensus 167 ~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp EETTEECEEEECCCHHH
T ss_pred EECCEEEEEEEcCCCcc
Confidence 9999999999987543
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.3e-30 Score=256.31 Aligned_cols=164 Identities=30% Similarity=0.596 Sum_probs=150.5
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++. +..++|+.+.+.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999996 5789999999988754
Q ss_pred cCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-Cc
Q 045707 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TL 229 (901)
Q Consensus 151 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i 229 (901)
... ....++|||+|||.++|+++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|++ +++ .+
T Consensus 81 ~~~------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 81 RDE------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp HHH------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred hhh------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 321 2346799999999999999999999999999999999998899999999999999999999999 675 49
Q ss_pred CCcEEEEEeccCC
Q 045707 230 GGRTIIVKLADTH 242 (901)
Q Consensus 230 ~g~~l~V~~a~~~ 242 (901)
+|++|.|.||.++
T Consensus 154 ~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSCEEEEECCCC
T ss_pred CCeEEEEeecCCC
Confidence 9999999999865
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.9e-29 Score=272.66 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=183.6
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCC--------------c---chhHHhhh-----------ccCCCCCCCeEEEe
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQY--------------P---SIAEEIKS-----------VASADPVHRKLFVR 78 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~--------------~---~~~~~~~~-----------~~~~~~~~~~lfV~ 78 (901)
...+||++|+.++++++|.++|+++|... . .....+.. .....+..++|||+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~ 101 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVA 101 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEc
Confidence 36899999999999999999999999221 0 00011111 12224567899999
Q ss_pred CCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccccCCCcCC
Q 045707 79 GLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEGLSGVSA 157 (901)
Q Consensus 79 nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~~~~~~~ 157 (901)
|||+++|+++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++......
T Consensus 102 nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--- 178 (284)
T 3smz_A 102 NLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--- 178 (284)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC---
T ss_pred CCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC---
Confidence 99999999999999999999999999999989999999999999999999999665 77899999999998765432
Q ss_pred CCccccceEEEcCCCCCC-cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 158 VPDLAQRKLYIGGLSPEV-TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 158 ~~~~~~~~lfV~nLp~~~-tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
......++|||+|||.++ |+++|+++|++||.|.++.+..+. +|.++|+|||+|.+.++|.+|++.+|+. ++|++|.
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 223457899999999995 999999999999999999999987 6999999999999999999999999976 9999999
Q ss_pred EEeccCCCCC
Q 045707 236 VKLADTHKGK 245 (901)
Q Consensus 236 V~~a~~~~~~ 245 (901)
|.|+.++..+
T Consensus 258 v~~a~~~~~~ 267 (284)
T 3smz_A 258 VSFCAPGPPG 267 (284)
T ss_dssp EEECCSSSCH
T ss_pred EEEecCCCcc
Confidence 9999876653
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-29 Score=248.80 Aligned_cols=163 Identities=29% Similarity=0.459 Sum_probs=149.4
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
|+|||+|||.++|+++|+++|++||+|.+|++++++ +|+++|||||+|.+.++|.+|++.+ +..+.|+.+.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 6889999999999999999999654 77899999999998654
Q ss_pred CCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC
Q 045707 152 LSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG 230 (901)
Q Consensus 152 ~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~ 230 (901)
.. ......++|||+|||.++|+++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++
T Consensus 80 ~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 80 QQ----SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CC----CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CC----CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 33 23345789999999999999999999999999999999999989999999999999999999999999976 99
Q ss_pred CcEEEEEecc
Q 045707 231 GRTIIVKLAD 240 (901)
Q Consensus 231 g~~l~V~~a~ 240 (901)
|++|.|.||+
T Consensus 156 g~~i~v~~a~ 165 (166)
T 3md3_A 156 GRPLRINWAA 165 (166)
T ss_dssp TEECEEEESC
T ss_pred CcEEEEEecC
Confidence 9999999986
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3e-29 Score=248.41 Aligned_cols=163 Identities=28% Similarity=0.428 Sum_probs=150.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
+.++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.+.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999889999999999999999999999854 778999999999986
Q ss_pred ccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 150 EGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 150 ~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
.... ....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+.
T Consensus 82 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 82 PGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CCSS------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCcc------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 5432 234689999999999999999999999999999999999888999999999999999999999999976
Q ss_pred cCC--cEEEEEec
Q 045707 229 LGG--RTIIVKLA 239 (901)
Q Consensus 229 i~g--~~l~V~~a 239 (901)
++| ++|.|+||
T Consensus 156 ~~g~~~~l~V~~A 168 (168)
T 1b7f_A 156 PEGGSQPLSVRLA 168 (168)
T ss_dssp CTTCSSCCEEEEC
T ss_pred ecCCCeEEEEEeC
Confidence 877 99999986
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.7e-29 Score=246.62 Aligned_cols=162 Identities=28% Similarity=0.440 Sum_probs=149.2
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC-Ccccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~v~~a~~ 150 (901)
.++|||+|||+++|+++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++. ++..+.|+.+.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999986 47789999999998864
Q ss_pred cCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c
Q 045707 151 GLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 151 ~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
... ....++|||+|||.++++++|+++|++||.|..+++..+..+|.++|||||+|.+.++|.+|++.+|+. +
T Consensus 82 ~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 82 SSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp CCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred Ccc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 432 334688999999999999999999999999999999999888999999999999999999999999976 8
Q ss_pred CCc--EEEEEec
Q 045707 230 GGR--TIIVKLA 239 (901)
Q Consensus 230 ~g~--~l~V~~a 239 (901)
+|+ +|.|+||
T Consensus 156 ~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 SGATEPITVKFA 167 (167)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCccceEEEeC
Confidence 886 4888886
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.4e-29 Score=258.98 Aligned_cols=172 Identities=23% Similarity=0.402 Sum_probs=151.3
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
..++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999999999889999999999999999999999954 778999999998875
Q ss_pred ccCCCcCC-----CCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHc
Q 045707 150 EGLSGVSA-----VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224 (901)
Q Consensus 150 ~~~~~~~~-----~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 224 (901)
........ ......++|||+|||.++|+++|+++|++||.|..+++..++.+|+++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 44321110 1123468999999999999999999999999999999999998999999999999999999999999
Q ss_pred CCCC-cCCcEEEEEeccCC
Q 045707 225 PHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 225 l~~~-i~g~~l~V~~a~~~ 242 (901)
+|+. ++|+.|.|.|+.++
T Consensus 187 l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HTTCBCSSSBCEEEECSSC
T ss_pred ccCCEeCCcEEEEEEecCC
Confidence 9966 99999999999865
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=3.8e-28 Score=242.16 Aligned_cols=164 Identities=26% Similarity=0.330 Sum_probs=142.8
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCC--CcceEEEEEecchhhHHHHhcCC-ccccc---ccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATG--KSRGYGFITYKHMESTQSALRAP-SKLID---GRLAV 144 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g--~~kG~aFV~F~~~~~A~~Al~~~-~~~l~---g~~i~ 144 (901)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.+| +++|||||+|.+.++|++|++.+ +..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999876 44443 45666
Q ss_pred cccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHc
Q 045707 145 CNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224 (901)
Q Consensus 145 v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 224 (901)
+.++..... .....++|||+|||.++|+++|+++|++||.|.++.+..+. +|.++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN-----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC-----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc-----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 665543322 23357899999999999999999999999999999999986 499999999999999999999999
Q ss_pred CCCC-cC---CcEEEEEecc
Q 045707 225 PHKT-LG---GRTIIVKLAD 240 (901)
Q Consensus 225 l~~~-i~---g~~l~V~~a~ 240 (901)
+|+. +. |++|.|+||+
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9964 43 4999999984
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.9e-28 Score=248.35 Aligned_cols=168 Identities=17% Similarity=0.350 Sum_probs=144.5
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcC-----------CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHG-----------EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLID 139 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G-----------~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~ 139 (901)
..++|||+|||+++|+++|+++|++|| .|.++.+ ++++|||||+|.+.++|++|++.++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 468999999999999999999999995 4444443 56789999999999999999965688899
Q ss_pred ccccccccccccCCCcC--------------CCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCce
Q 045707 140 GRLAVCNLACEGLSGVS--------------AVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESR 205 (901)
Q Consensus 140 g~~i~v~~a~~~~~~~~--------------~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~k 205 (901)
|+.|.|.++........ .......++|||+|||.++++++|+++|++||.|..+.+..++.+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999998865422111 1112456899999999999999999999999999999999998899999
Q ss_pred eEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCC
Q 045707 206 GFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 206 G~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~ 244 (901)
|||||+|.+.++|.+|++.+|+. ++|+.|.|.++.++..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999976 9999999999987643
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=4.9e-28 Score=241.60 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=145.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
......++|||+|||.++|+++|+++|++||.+.. .++.+..+|+++|||||+|.+.++|++|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 34567899999999999999999999999998776 34455568999999999999999999999756788999999999
Q ss_pred cccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 147 LACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
++..... ......++|||+|||.++|+++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.+|
T Consensus 87 ~~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 87 KPKGRDS----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp CCCCSSC----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCccc----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 9865432 223457899999999999999999999999999766 4568999999999999999999999999
Q ss_pred CC-cCCcEEEEEeccCC
Q 045707 227 KT-LGGRTIIVKLADTH 242 (901)
Q Consensus 227 ~~-i~g~~l~V~~a~~~ 242 (901)
+. ++|+.|.|.||.++
T Consensus 158 g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 158 GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEETTEEEEEEECSSC
T ss_pred CCEECCeEEEEEecCCC
Confidence 65 99999999999865
No 17
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.95 E-value=2.7e-27 Score=252.77 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=202.9
Q ss_pred HhHHHHhhcCccCchhhhHHhhchhhcccC-hhHHHHHHHHHHHcCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHh
Q 045707 488 ENYHVLCNYGVARNKIGKILKEAREVFQFD-VGVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKS 566 (901)
Q Consensus 488 ~~~~~L~~~g~~~~~i~~l~~~~~~i~~~~-~~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~ 566 (901)
+.+.+|.+.|++.++|++....+|.++.++ ++.++++++||.++|++.++|++++.++|.+|.+++++ ++|.++
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~---- 81 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVA---- 81 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHH----
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHH----
Confidence 568999999999999999988888999996 56999999999999999999999999999999999976 877654
Q ss_pred cCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHH-HhcCCChHHHHHH
Q 045707 567 MEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLL-LKFGSTRNELCSI 645 (901)
Q Consensus 567 lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl-~~lG~s~~~i~~~ 645 (901)
||+++|+++++|++++.++|.+|.++++ +++++++|| .++|++.+++.++
T Consensus 82 ----------------------------~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~l 132 (270)
T 3m66_A 82 ----------------------------YLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDL 132 (270)
T ss_dssp ----------------------------HHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ----------------------------HHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555888888999999999999999999 699999999 5899999999999
Q ss_pred HhhCCcceehhccccchHHHHHH-HHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHH
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFL-FEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKK 724 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL-~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~ 724 (901)
+.++|++++++.+ .++++++|| +++|++.++|.+++.++|.+|+.+
T Consensus 133 l~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-------------------------------- 179 (270)
T 3m66_A 133 VVRLPRLLTGSLE-PVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-------------------------------- 179 (270)
T ss_dssp HHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC--------------------------------
T ss_pred HHhCCcceeechH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheec--------------------------------
Confidence 9999999999998 789999975 789999999999999999987432
Q ss_pred hhhccccCCCCchhhHHHHHHHHhhhccCcccChHHHHHHHHHHhcccHHHHHHHHHHH-HcCCCHHHHHHHHhhcCCcc
Q 045707 725 LALGSRVGRLPAEKERSQLLRTKFLLDVGYVENSNEMAKALKHFRGRGAELQERFDCLV-NAGLDRKDVCEMIRVSPQIL 803 (901)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~~~~~~a~~~~~~~~~~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL 803 (901)
.+.+++|++||. ++|++.++|. ++|++|
T Consensus 180 -----------------------------------------------~~~l~~k~~fL~~~mg~~~~~i~----~~P~~l 208 (270)
T 3m66_A 180 -----------------------------------------------KMKLTETFDFVHNVMSIPHHIIV----KFPQVF 208 (270)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTTSCCCHHHHH----HCGGGG
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhCCCHHHHH----hCchHh
Confidence 123679999998 8999998765 799999
Q ss_pred ccCHHHHHHHHHHHHHh--cCCCccccccCCc---ccccccchhHHH
Q 045707 804 NMKKDVIKSKIDFLVNY--LGYPLSFLVSFPS---YFNYTEERIKLR 845 (901)
Q Consensus 804 ~~s~e~l~~k~~fL~~~--mg~~~~~i~~~P~---~L~ysleri~pR 845 (901)
++|.|+|++++.||..- .|+...+. .++. +|..|-++-.-|
T Consensus 209 ~~Sleri~pR~~~l~~L~~~g~~~~~~-~~~~L~~~l~~sd~~F~~~ 254 (270)
T 3m66_A 209 NTRLFKVKERHLFLTYLGRAQYDPAKP-NYISLDKLVSIPDEIFCEE 254 (270)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCCCTTSS-SCCCHHHHHHSCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhhccCCCCCCC-CCCCHHHHhcCCHHHHHHH
Confidence 99999999999998762 34444332 2333 666665444333
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=5.1e-27 Score=233.36 Aligned_cols=158 Identities=18% Similarity=0.390 Sum_probs=141.2
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVH----G-------EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLID 139 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~ 139 (901)
+.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+..++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 66666654 4579999999999999999965688899
Q ss_pred ccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHH
Q 045707 140 GRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAK 219 (901)
Q Consensus 140 g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 219 (901)
|+.+.|.++..... ....++|||+|||.++|+++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.
T Consensus 77 g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred CceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 99999998754322 234789999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHcCCCC-cCCcEEEEEecc
Q 045707 220 KAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 220 ~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
+|++.+|+. ++|++|.|+||.
T Consensus 151 ~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 151 QAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHcCCCEECCeEEEEEeCC
Confidence 999999976 999999999973
No 19
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=1.8e-26 Score=235.50 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=137.6
Q ss_pred CCCCeEEEeCCC-cCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 70 PVHRKLFVRGLA-WNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
.++++|||+||| .++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.+ |..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999865 4799999999999999999976 6789999999998
Q ss_pred ccccCCCcC-------------------C------------CCccccceEEEcCCCCCCcHHHHHhhhccCCce--eEee
Q 045707 148 ACEGLSGVS-------------------A------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI--EEGS 194 (901)
Q Consensus 148 a~~~~~~~~-------------------~------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I--~~v~ 194 (901)
+........ . ....+.++|||+|||+++|+++|+++|++||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 753221000 0 001235689999999999999999999999999 8999
Q ss_pred eeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCc----EEEEEec
Q 045707 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR----TIIVKLA 239 (901)
Q Consensus 195 i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~----~l~V~~a 239 (901)
+..+. |..+|+|||+|.+.++|.+|+..||+. +.|+ ++.|++|
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88775 556799999999999999999999976 7764 6788776
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2e-25 Score=240.67 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=142.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLC----AAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
.....++|||+|||+++|+++|+ ++|++||.|.+|++++ +|+++|||||+|.+.++|++|++.+ +..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999976 8999999999999875 7889999999999999999999776 67799999
Q ss_pred cccccccccCCCc-------------------------------------------------------------------
Q 045707 143 AVCNLACEGLSGV------------------------------------------------------------------- 155 (901)
Q Consensus 143 i~v~~a~~~~~~~------------------------------------------------------------------- 155 (901)
|.|.++.......
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999875432100
Q ss_pred --------------------------------------CCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeec
Q 045707 156 --------------------------------------SAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAY 197 (901)
Q Consensus 156 --------------------------------------~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~ 197 (901)
........++|||+|||.++|+++|+++|++||.|.++++..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 001122457899999999999999999999999999999986
Q ss_pred cCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC-CcEEEEEecc
Q 045707 198 DKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG-GRTIIVKLAD 240 (901)
Q Consensus 198 d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~-g~~l~V~~a~ 240 (901)
++ +|||||+|.+.++|.+|++.+|+. ++ |+.|.|.||+
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 54 489999999999999999999976 88 9999999986
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=3.7e-25 Score=230.80 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=141.9
Q ss_pred CCCCCCCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC-Ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA-PSKLIDGRLAV 144 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~ 144 (901)
...+..++|||+|||+ ++|+++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999999874 78999999999999999985 47889999999
Q ss_pred cccccccCCCcCC-----------------------------CCccccceEEEcCCCCCCcHHHHHhhhccCC-ceeEee
Q 045707 145 CNLACEGLSGVSA-----------------------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG-EIEEGS 194 (901)
Q Consensus 145 v~~a~~~~~~~~~-----------------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~v~ 194 (901)
|.++......... ......++|||+|||.++++++|+++|++|| .|..++
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9988643111000 0122368899999999999999999999999 999999
Q ss_pred eeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC-CcEEEEEeccCC
Q 045707 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG-GRTIIVKLADTH 242 (901)
Q Consensus 195 i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~-g~~l~V~~a~~~ 242 (901)
+..+ .+|||||+|.+.++|.+|++.+|+. ++ |++|.|.|+.++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 8653 3579999999999999999999976 88 999999999763
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=2.3e-25 Score=241.50 Aligned_cols=162 Identities=14% Similarity=0.208 Sum_probs=137.8
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
..++...++|||+|||+++|+++|+++|++||+|.+|++++++. + ++|||||+|.+.++|++|++.++..+.|+.+.|
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence 34566789999999999999999999999999999999999863 3 589999999999999999986678899999999
Q ss_pred ccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCC-ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHc
Q 045707 146 NLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG-EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224 (901)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 224 (901)
.++ ..++|||+|||.++++++|+++|++|| .|..+.++.++. |.++|||||+|.+.++|.+|++.
T Consensus 113 ~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 113 SHL-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp EEC-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHH
T ss_pred EEC-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHH
Confidence 875 368999999999999999999999999 999999999876 88999999999999999999999
Q ss_pred CCCC-cCCcEEEEEeccCCC
Q 045707 225 PHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 225 l~~~-i~g~~l~V~~a~~~~ 243 (901)
+++. ++|+.|.|.++.+..
T Consensus 179 l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HTTCEETTEECEEEECCCC-
T ss_pred hCCCEeCCcEEEEEECCCCc
Confidence 9976 999999999987543
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=5.2e-25 Score=237.77 Aligned_cols=154 Identities=25% Similarity=0.380 Sum_probs=142.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||.++|+++|+++|++|| |.+|++ ++++|||||+|.+.++|.+|++.+ +..+.|+.+.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3568999999999999999999999999 998887 457899999999999999999875 67799999999875
Q ss_pred cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 149 CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 149 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
. ..++|||+|||.++|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 93 ~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 93 P------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp C------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred C------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3 3578999999999999999999999999999999999989999999999999999999999999976
Q ss_pred -cCCcEEEEEeccCC
Q 045707 229 -LGGRTIIVKLADTH 242 (901)
Q Consensus 229 -i~g~~l~V~~a~~~ 242 (901)
++|+.|.|.++.++
T Consensus 161 ~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 161 PLGPRTLYVHWTDAG 175 (284)
T ss_dssp EETTEECEEEECCGG
T ss_pred EeCCcEEEEEECCCC
Confidence 99999999998764
No 24
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.92 E-value=2.4e-25 Score=226.80 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=139.4
Q ss_pred CCCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC-Ccccccccccccccc
Q 045707 71 VHRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNLA 148 (901)
Q Consensus 71 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~v~~a 148 (901)
++++|||+|||+ ++|+++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++. ++..+.|+.+.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 78999999999999999985 477899999999987
Q ss_pred cccCCCcCC-----------------------------CCccccceEEEcCCCCCCcHHHHHhhhccCC-ceeEeeeecc
Q 045707 149 CEGLSGVSA-----------------------------VPDLAQRKLYIGGLSPEVTTEVLLNFFGRHG-EIEEGSVAYD 198 (901)
Q Consensus 149 ~~~~~~~~~-----------------------------~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d 198 (901)
......... ....+.++|||+|||.++++++|+++|++|| .|..+++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 643211000 0113478899999999999999999999999 9999998764
Q ss_pred CCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC-CcEEEEEeccCC
Q 045707 199 KDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG-GRTIIVKLADTH 242 (901)
Q Consensus 199 ~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~-g~~l~V~~a~~~ 242 (901)
. +|+|||+|.+.++|.+|++.+|+. ++ |++|.|.|+.++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 589999999999999999999976 88 999999999753
No 25
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=7.9e-25 Score=232.98 Aligned_cols=155 Identities=27% Similarity=0.377 Sum_probs=140.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||+++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999999999999999999999999864 4699999999999999999854 77899999999987
Q ss_pred cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC-C
Q 045707 149 CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-K 227 (901)
Q Consensus 149 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~ 227 (901)
.. .++|||+|||.++|+++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|++.+| +
T Consensus 94 ~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 94 TH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp CC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred cc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 43 578999999999999999999999999999999999 579999999999999999999999995 5
Q ss_pred C-cC---CcEEEEEeccCCC
Q 045707 228 T-LG---GRTIIVKLADTHK 243 (901)
Q Consensus 228 ~-i~---g~~l~V~~a~~~~ 243 (901)
. +. |++|.|.++....
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CEESSSSCCBCEEEECCCEE
T ss_pred eEEecCCCceEEEeeccccC
Confidence 4 33 8999999998654
No 26
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=212.01 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHcCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHh
Q 045707 519 GVFQSKLHAYEMLGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRN 598 (901)
Q Consensus 519 ~~l~~~l~~L~~lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~ 598 (901)
..++..|..|.++||+.++|++++..+|.++. .++..++.||..
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~------------------------------------~~l~~~i~~L~~ 87 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASL------------------------------------QQLLDIISEFIL 87 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH------------------------------------HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccch------------------------------------hHHHHHHHHHHH
Confidence 34566666677777777777777777776642 223356778888
Q ss_pred cCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcceehhccccchHHHHHH-HHhhhchhH
Q 045707 599 LGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFL-FEIKMKVDE 677 (901)
Q Consensus 599 ~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL-~~~g~~~~~ 677 (901)
+|++.++|++||.++|.||..+++ +|+++++||+++|++..+|.+++.++|++|+++.+ .+..++.|| .++|++.++
T Consensus 88 LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~e 165 (335)
T 4fp9_B 88 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQ 165 (335)
T ss_dssp TTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHH
T ss_pred cCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999996 89999999999999999999999999999999998 688888888 479999999
Q ss_pred HHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccC
Q 045707 678 IGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVEN 757 (901)
Q Consensus 678 i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~ 757 (901)
|.++|.++|.+|+.+
T Consensus 166 v~~mv~r~P~lL~~S----------------------------------------------------------------- 180 (335)
T 4fp9_B 166 VTKILHSCPSVLRED----------------------------------------------------------------- 180 (335)
T ss_dssp HHHHHHHCGGGGTSC-----------------------------------------------------------------
T ss_pred HHHHHHhCChhhhCC-----------------------------------------------------------------
Confidence 999999999997432
Q ss_pred hHHHHHHHHHHhcccHHHHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCC
Q 045707 758 SNEMAKALKHFRGRGAELQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGY 823 (901)
Q Consensus 758 ~~~~~~a~~~~~~~~~~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~ 823 (901)
.+.|++|++||. ++|++.++|++ |++|+||+++|+++..||.. +|.
T Consensus 181 --------------~e~L~~K~efLv~~Mgl~~~eIvk-----P~~l~ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 181 --------------LGQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp --------------HHHHHHHHHHHHTTTCCCHHHHHH-----TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred --------------HHHHHHHHHHHHHHhCCCHHHccc-----cchhhccHHHHHHHHHHHHH-cCC
Confidence 123779999999 99999998862 99999999999999999988 787
No 27
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.4e-20 Score=184.04 Aligned_cols=144 Identities=18% Similarity=0.256 Sum_probs=114.2
Q ss_pred EEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc--ccccc------cccccccccccCCCcCCCCccccceEEEcCCC
Q 045707 101 EGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS--KLIDG------RLAVCNLACEGLSGVSAVPDLAQRKLYIGGLS 172 (901)
Q Consensus 101 ~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~--~~l~g------~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp 172 (901)
+++|+.+. .+++|||||+|.+.++|++|++.++ ..+.| .......................++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 57788875 3699999999999999999997753 12222 22222222222222222334457899999999
Q ss_pred CCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCCC
Q 045707 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGKP 246 (901)
Q Consensus 173 ~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~~ 246 (901)
+++|+++|+++|++||.|..+.+..|+.+|.++|||||+|.+.++|.+|++.+|+. ++|++|.|.++.++..+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 99999999999999999999999999989999999999999999999999999976 999999999998765443
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=4.2e-19 Score=163.42 Aligned_cols=107 Identities=20% Similarity=0.350 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
..++|||+|||+++|+++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|++|++.+ +..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999985 458999999999999999999875 788999999999987
Q ss_pred ccCCCcCC--CCccccceEEEcCCCCCCcHHH
Q 045707 150 EGLSGVSA--VPDLAQRKLYIGGLSPEVTTEV 179 (901)
Q Consensus 150 ~~~~~~~~--~~~~~~~~lfV~nLp~~~tee~ 179 (901)
........ ......++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 54432221 2233456899999999999864
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=148.66 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
..+++|||+|||+++|+++|+++|++||+|.+|++++|+.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999875 78899999999998
Q ss_pred c
Q 045707 149 C 149 (901)
Q Consensus 149 ~ 149 (901)
.
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 30
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=2.9e-17 Score=158.85 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=108.3
Q ss_pred CCCcceEEEEEecchhhHHHHhcCC--cccccccccccccccccCC----------CcCCCCccccceEEEcCCCCCCcH
Q 045707 110 TGKSRGYGFITYKHMESTQSALRAP--SKLIDGRLAVCNLACEGLS----------GVSAVPDLAQRKLYIGGLSPEVTT 177 (901)
Q Consensus 110 ~g~~kG~aFV~F~~~~~A~~Al~~~--~~~l~g~~i~v~~a~~~~~----------~~~~~~~~~~~~lfV~nLp~~~te 177 (901)
....+|+++|+|.+.++|++|++.+ +..++| .+.+.++..... ..........++|||+|||+++|+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999876 467999 888888754211 111223446789999999999999
Q ss_pred HHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCC
Q 045707 178 EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHK 243 (901)
Q Consensus 178 e~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~ 243 (901)
++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|++.+|+. ++|++|.|.|+.+++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 5789999999999999999999976 999999999998754
No 31
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=3e-17 Score=166.34 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=105.1
Q ss_pred CCCCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-----------------------hHHhhh--------------
Q 045707 23 SSSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-----------------------AEEIKS-------------- 64 (901)
Q Consensus 23 ~s~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-----------------------~~~~~~-------------- 64 (901)
.+.....+||++|+..+++++|.++|+++|.+.. .+ ...+..
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 3345679999999999999999999999997611 00 000000
Q ss_pred --------ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc
Q 045707 65 --------VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK 136 (901)
Q Consensus 65 --------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~ 136 (901)
........++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~ 168 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCC
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCc
Confidence 011112358999999999999999999999999999999999988999999999999999999999998888
Q ss_pred cccccccccccccccCC
Q 045707 137 LIDGRLAVCNLACEGLS 153 (901)
Q Consensus 137 ~l~g~~i~v~~a~~~~~ 153 (901)
.++|+.|.|.++..+..
T Consensus 169 ~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 169 TVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EETTEECEEEECC----
T ss_pred EECCEEEEEEecCChhH
Confidence 99999999999876544
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=145.39 Aligned_cols=80 Identities=30% Similarity=0.462 Sum_probs=76.4
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+++|||+|||.++|+++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|++|++.+|+. ++|++|.|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4678999999999999999999999999999999999999999999999999999999999999976 999999999996
Q ss_pred C
Q 045707 241 T 241 (901)
Q Consensus 241 ~ 241 (901)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=143.82 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=74.7
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-c-ccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-S-KLIDGRLAVCNLA 148 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~-~~l~g~~i~v~~a 148 (901)
+++|||+|||+++|+++|+++|++|| +|.+|+|++|+.||+++|||||+|.+.++|++|++.+ + ..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999876 4 4699999999998
Q ss_pred cccC
Q 045707 149 CEGL 152 (901)
Q Consensus 149 ~~~~ 152 (901)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 34
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=1.5e-16 Score=138.46 Aligned_cols=82 Identities=33% Similarity=0.579 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
..+...++|||+|||+++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.++..++|+.|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999989999999999999999999999998889999999988
Q ss_pred cc
Q 045707 147 LA 148 (901)
Q Consensus 147 ~a 148 (901)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=141.03 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=76.0
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCC-ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC-CC-cCCcEEEEEec
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHG-EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH-KT-LGGRTIIVKLA 239 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~-~~-i~g~~l~V~~a 239 (901)
+++|||+|||.++|+++|+++|++|| .|.+|++++|+.+|.++|||||+|.+.++|++|++.++ +. ++|++|.|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 44 99999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=1.6e-16 Score=150.25 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=82.4
Q ss_pred eEEEEEecchhhHHHHhcCCc-ccccccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEe
Q 045707 115 GYGFITYKHMESTQSALRAPS-KLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG 193 (901)
Q Consensus 115 G~aFV~F~~~~~A~~Al~~~~-~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v 193 (901)
-|+|++|.+...+..|+..++ ....|+. ...+ ..+.......++|||+|||.++|+++|+++|++||.|..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~------~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSY------GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp -------------------------------CCS------CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCc------CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 368888889999999988873 3333332 1111 1222334567899999999999999999999999999999
Q ss_pred eeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCCC
Q 045707 194 SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGKP 246 (901)
Q Consensus 194 ~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~~ 246 (901)
.+..++.+|+++|||||+|.+.++|++|++.+|+. ++|++|.|.|+.++....
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999989999999999999999999999999966 999999999998765443
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=144.81 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
.+..++|||+|||+++|+++|+++|++||+|.+|+|++|+.||+++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999875 6789999999998
Q ss_pred ccc
Q 045707 148 ACE 150 (901)
Q Consensus 148 a~~ 150 (901)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 38
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.9e-17 Score=161.78 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=103.3
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc------------------------chhHHhhh---------------ccC
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP------------------------SIAEEIKS---------------VAS 67 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~------------------------~~~~~~~~---------------~~~ 67 (901)
+..+||++|+.++++++|.+.|+++|.+.. .....+.. ...
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchh
Confidence 468999999999999999999999997611 00011111 000
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||.++|+++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.++..++|+.|.|.+
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 162 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEE
T ss_pred hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEee
Confidence 01235689999999999999999999999999999999998899999999999999999999999667889999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+.++
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=6e-17 Score=142.73 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC--eeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcc-----cccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGE--IEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSK-----LIDG 140 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~-----~l~g 140 (901)
....-.||||+|||+++|+++|+++|++||. |.+|++++|+.||++||||||+|.+.++|++|++.++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456789999999999999999999999995 77999999999999999999999999999999998743 4899
Q ss_pred cccccccccc
Q 045707 141 RLAVCNLACE 150 (901)
Q Consensus 141 ~~i~v~~a~~ 150 (901)
|.|.|.+|.+
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999853
No 40
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=6.7e-17 Score=166.15 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=100.4
Q ss_pred CCCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-----------------------hHHhhh--------------c
Q 045707 24 SSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-----------------------AEEIKS--------------V 65 (901)
Q Consensus 24 s~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-----------------------~~~~~~--------------~ 65 (901)
+.+.+++||++|+.++++++|.++|+++|.+.. .+ ...+.. .
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 344678999999999999999999999998621 00 001110 0
Q ss_pred cC-----CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc
Q 045707 66 AS-----ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID 139 (901)
Q Consensus 66 ~~-----~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~ 139 (901)
.. .....++|||+|||+++|+++|+++|++||.|.+|+|++|. +.++|||||+|.+.++|++|++.+ |..++
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 00 11235689999999999999999999999999999999984 458999999999999999999875 78899
Q ss_pred cccccccccccc
Q 045707 140 GRLAVCNLACEG 151 (901)
Q Consensus 140 g~~i~v~~a~~~ 151 (901)
|+.|.|.++..+
T Consensus 170 g~~i~V~~a~~~ 181 (213)
T 4f02_A 170 DRKVFVGRFKSR 181 (213)
T ss_dssp TEECEEEECCCH
T ss_pred CEEEEEEEcCCC
Confidence 999999998653
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=2.5e-15 Score=138.15 Aligned_cols=88 Identities=32% Similarity=0.512 Sum_probs=81.1
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++++++|+++|++||.|..|.+..++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999999999889999999999999999999999999976 999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
|+.++....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998765543
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=140.42 Aligned_cols=80 Identities=19% Similarity=0.359 Sum_probs=74.4
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCc--eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-----cCCcEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGE--IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-----LGGRTI 234 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~--I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-----i~g~~l 234 (901)
.-++|||+|||+++|+++|+++|++||. +.+|++++|+.||+++|||||+|.+.++|++|++.+|+. ++|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 678999999999999999999999999999999999863 899999
Q ss_pred EEEeccC
Q 045707 235 IVKLADT 241 (901)
Q Consensus 235 ~V~~a~~ 241 (901)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 43
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-16 Score=140.35 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.+...++|||+|||+++|+++|+++|++||+|.+|.|++++. |+++|||||+|.+.++|++|++.++..++|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999999986 9999999999999999999999668889999999998
Q ss_pred ccc
Q 045707 148 ACE 150 (901)
Q Consensus 148 a~~ 150 (901)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=140.19 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=78.2
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
.+.++|||+||++++|+++|+++|++||.|.++.+++|+.||+++|||||+|.+.++|++|++.+|+. ++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999999999999999999999999999999999976 99999999999
Q ss_pred cCCC
Q 045707 240 DTHK 243 (901)
Q Consensus 240 ~~~~ 243 (901)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7543
No 45
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=3.6e-16 Score=154.02 Aligned_cols=122 Identities=23% Similarity=0.349 Sum_probs=101.8
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc------------------------chhHHh-----------------hhc
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP------------------------SIAEEI-----------------KSV 65 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~------------------------~~~~~~-----------------~~~ 65 (901)
.+.+||++|+.++++++|.+.|+++|.+.. .....+ ...
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 468999999999999999999999997611 000001 112
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc--cc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG--RL 142 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g--~~ 142 (901)
.......++|||+|||.++|+++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++.+ +..+.| ++
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 233456789999999999999999999999999999999999889999999999999999999999965 677877 88
Q ss_pred cccccc
Q 045707 143 AVCNLA 148 (901)
Q Consensus 143 i~v~~a 148 (901)
|.|.+|
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 888764
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=137.68 Aligned_cols=87 Identities=29% Similarity=0.415 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
......++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.++..+.|+.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999989999999999999999999999966788999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9876544
No 47
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=4.1e-16 Score=141.82 Aligned_cols=87 Identities=29% Similarity=0.469 Sum_probs=76.6
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
.+.+...++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.++..++|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999998999999999999999999999999998899999999
Q ss_pred ccccccC
Q 045707 146 NLACEGL 152 (901)
Q Consensus 146 ~~a~~~~ 152 (901)
.++..+.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987543
No 48
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.2e-16 Score=153.94 Aligned_cols=121 Identities=27% Similarity=0.359 Sum_probs=102.0
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-------------------h---HHhh-------------------hcc
Q 045707 29 QDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-------------------A---EEIK-------------------SVA 66 (901)
Q Consensus 29 ~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-------------------~---~~~~-------------------~~~ 66 (901)
.+||++|+.++++++|.+.|+++|.+.. .+ . ..+. ...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 5799999999999999999999997721 00 0 0110 012
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.+ +..++|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 23445778999999999999999999999999999999999889999999999999999999999965 78899999999
Q ss_pred cccc
Q 045707 146 NLAC 149 (901)
Q Consensus 146 ~~a~ 149 (901)
.++.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9874
No 49
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=135.21 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=80.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..|.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445789999999999999999999999999999999999989999999999999999999999999976 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 98765443
No 50
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=5e-16 Score=152.71 Aligned_cols=122 Identities=22% Similarity=0.333 Sum_probs=99.8
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc---------------------chh---HHhh-----------------hc
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP---------------------SIA---EEIK-----------------SV 65 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~---------------------~~~---~~~~-----------------~~ 65 (901)
++.+||++|+..+++++|.+.|+++|.+.. +.. ..+. ..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 468999999999999999999999997611 000 0110 01
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc--
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL-- 142 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~-- 142 (901)
.......++|||+|||.++|+++|+++|++||.|.++++..++.+|.++|||||+|.+.++|.+|++.+ |..+.|+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 222345689999999999999999999999999999999999889999999999999999999999975 67799975
Q ss_pred cccccc
Q 045707 143 AVCNLA 148 (901)
Q Consensus 143 i~v~~a 148 (901)
|.|.+|
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 666553
No 51
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=4.9e-16 Score=153.81 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=100.4
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhh----c-------CCC---------------cchh---HHh---------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRL----G-------SQY---------------PSIA---EEI--------------- 62 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~----~-------~~~---------------~~~~---~~~--------------- 62 (901)
...+||++|+.++++++|.+.|+++ | .+. .+.. ..+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR 83 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeec
Confidence 3589999999999999999999999 5 220 0000 011
Q ss_pred -hhccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 63 -KSVASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 63 -~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
..........++|||+|||.++|+++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.+ +..++|
T Consensus 84 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 84 RPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp CCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 001112234689999999999999999999999999999999999889999999999999999999999975 778999
Q ss_pred cccccccc
Q 045707 141 RLAVCNLA 148 (901)
Q Consensus 141 ~~i~v~~a 148 (901)
+.|.|.+|
T Consensus 164 ~~l~V~~A 171 (172)
T 2g4b_A 164 KKLLVQRA 171 (172)
T ss_dssp EECEEEEC
T ss_pred eEEEEEeC
Confidence 99999886
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=133.88 Aligned_cols=86 Identities=27% Similarity=0.560 Sum_probs=78.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++. ++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999 7754 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98765543
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=3.2e-16 Score=137.31 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=70.3
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHG--EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
.+|||+|||+++|+++|+++|++|| .|.+|++++|+.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999999999999999999999999999999866 678999999999986
Q ss_pred ccC
Q 045707 150 EGL 152 (901)
Q Consensus 150 ~~~ 152 (901)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 54
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=140.06 Aligned_cols=87 Identities=44% Similarity=0.688 Sum_probs=80.5
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
...+...++|||+|||.++|+++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++|++.++..+.|+.|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999977999999999
Q ss_pred ccccccC
Q 045707 146 NLACEGL 152 (901)
Q Consensus 146 ~~a~~~~ 152 (901)
.++....
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9986543
No 55
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1e-15 Score=157.46 Aligned_cols=127 Identities=19% Similarity=0.334 Sum_probs=105.1
Q ss_pred CChhhhcccCCCCCHHHHHHHHhhhcCCCc-ch-----------------------hHHhhh------------------
Q 045707 27 SSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-SI-----------------------AEEIKS------------------ 64 (901)
Q Consensus 27 ~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-~~-----------------------~~~~~~------------------ 64 (901)
...+||++|+.++++++|.+.|+++|.+.. .+ ...+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 458999999999999999999999997611 00 001110
Q ss_pred ----------ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 65 ----------VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 65 ----------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
........++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 0011234589999999999999999999999999999999999889999999999999999999999975
Q ss_pred -cccccccccccccccccCC
Q 045707 135 -SKLIDGRLAVCNLACEGLS 153 (901)
Q Consensus 135 -~~~l~g~~i~v~~a~~~~~ 153 (901)
+..++|+.|.|.++.....
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 7789999999999876543
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5e-15 Score=136.38 Aligned_cols=85 Identities=38% Similarity=0.596 Sum_probs=79.8
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
.+...++|||+|||.++|+++|+++|++||.|..|++..++.+|+++|||||+|.+.++|++|++.+++.++|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97643
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=136.52 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=79.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
...+.++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999999889999999999999999999999765 678999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9976544
No 58
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=5.9e-16 Score=130.54 Aligned_cols=75 Identities=29% Similarity=0.598 Sum_probs=71.4
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
+|||+|||+++|+++|+++|++||+|.+|.++.++.+|+++|||||+|.+.++|++|++.++..++|+.+.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999988999999999999999999999997688899999999875
No 59
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.1e-15 Score=133.57 Aligned_cols=85 Identities=27% Similarity=0.349 Sum_probs=79.6
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999989999999999999999999999999976 99999999999
Q ss_pred cCCCCC
Q 045707 240 DTHKGK 245 (901)
Q Consensus 240 ~~~~~~ 245 (901)
.++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876544
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=137.74 Aligned_cols=87 Identities=33% Similarity=0.495 Sum_probs=80.3
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
..+...++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.++..+.|+.|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999997788999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9876544
No 61
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5e-16 Score=131.69 Aligned_cols=76 Identities=33% Similarity=0.563 Sum_probs=72.9
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
++|||+|||.++|+++|+++|++||+|.+|.+++++.+|+++|||||+|.+.++|++|++.++..++|+.+.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999998899999999876
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=8.1e-16 Score=133.76 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
.+.++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999975 77899999999998
Q ss_pred cc
Q 045707 149 CE 150 (901)
Q Consensus 149 ~~ 150 (901)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 63
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=137.90 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=80.9
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
++|||+|||.++|+++|+++|++||+|.+|.++.+ ++|||||+|.+.++|++|++.+ +..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999975 67899999999999765
Q ss_pred CCCcCCC----CccccceEEEcCCC
Q 045707 152 LSGVSAV----PDLAQRKLYIGGLS 172 (901)
Q Consensus 152 ~~~~~~~----~~~~~~~lfV~nLp 172 (901)
....... ......++|||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4332221 12236789999996
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=131.70 Aligned_cols=82 Identities=32% Similarity=0.530 Sum_probs=75.5
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999976 99999999999
Q ss_pred cCC
Q 045707 240 DTH 242 (901)
Q Consensus 240 ~~~ 242 (901)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=2.4e-15 Score=129.46 Aligned_cols=80 Identities=31% Similarity=0.539 Sum_probs=76.1
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
.+|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999989999999999999999999999999976 99999999999865
Q ss_pred C
Q 045707 243 K 243 (901)
Q Consensus 243 ~ 243 (901)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=132.20 Aligned_cols=84 Identities=29% Similarity=0.522 Sum_probs=78.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|.+|++.+|+. ++|++|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4789999999999999999999999999999999999999999999999999999999999999965 999999999998
Q ss_pred CCCCC
Q 045707 241 THKGK 245 (901)
Q Consensus 241 ~~~~~ 245 (901)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 67
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=5.8e-16 Score=130.55 Aligned_cols=75 Identities=29% Similarity=0.404 Sum_probs=71.7
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
+|||+|||.++|+++|+++|++||+|.+|.+++++.+|+++|||||+|.+.++|++|++.++..+.|+.+.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999998999999999999999999999999888999999998764
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=8.8e-16 Score=132.90 Aligned_cols=81 Identities=31% Similarity=0.439 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.+.+.++|||+|||.++|+++|+++|++||+|.+|.+++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999999999889999999999999999999999764 778999999998
Q ss_pred cc
Q 045707 147 LA 148 (901)
Q Consensus 147 ~a 148 (901)
++
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=132.97 Aligned_cols=85 Identities=32% Similarity=0.500 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999965 77899999999999
Q ss_pred cccCCC
Q 045707 149 CEGLSG 154 (901)
Q Consensus 149 ~~~~~~ 154 (901)
..+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 765443
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=133.16 Aligned_cols=85 Identities=27% Similarity=0.517 Sum_probs=79.5
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEe-eeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG-SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
..++|||+|||.++|+++|+++|++||.|..+ +++.++.+|.++|||||+|.+.++|++|++.+|+. ++|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 99999889999999999999999999999999976 99999999999
Q ss_pred cCCCCCC
Q 045707 240 DTHKGKP 246 (901)
Q Consensus 240 ~~~~~~~ 246 (901)
.++..+.
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8766544
No 71
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=2.5e-15 Score=131.22 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=75.4
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
+.++|||+|||.++|+++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|++|+..++..+.|+.|.|.++..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 45899999999999999999999999999999999998899999999999999999999995557889999999998865
Q ss_pred c
Q 045707 151 G 151 (901)
Q Consensus 151 ~ 151 (901)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-15 Score=132.40 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=78.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..++ +|+++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999998 8999999999999999999999999976 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987654
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-15 Score=134.09 Aligned_cols=88 Identities=26% Similarity=0.435 Sum_probs=80.9
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999999965 999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
++.++..+.
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998765443
No 74
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=5.8e-16 Score=135.63 Aligned_cols=81 Identities=27% Similarity=0.304 Sum_probs=71.1
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCC--ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHG--EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+|||+|||.++|+++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999975 999999999998
Q ss_pred CCCC
Q 045707 241 THKG 244 (901)
Q Consensus 241 ~~~~ 244 (901)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=135.38 Aligned_cols=87 Identities=21% Similarity=0.312 Sum_probs=80.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999865 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.......
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 98765443
No 76
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=134.64 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEG-AVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
...++|||+|||.++|+++|+++|++||.|.++ ++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 99999889999999999999999999999976 6779999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876544
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=1.3e-15 Score=131.17 Aligned_cols=79 Identities=34% Similarity=0.513 Sum_probs=74.4
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
.+|||+|||.++|+++|+++|++||+|.++.+++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999974 78899999999998654
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=134.25 Aligned_cols=85 Identities=33% Similarity=0.541 Sum_probs=78.3
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++. +..++|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 445678999999999999999999999999999999999998999999999999999999999995 6789999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 876544
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=3.1e-15 Score=137.57 Aligned_cols=86 Identities=31% Similarity=0.472 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999999999999999999999999999999889999999999999999999999875 678999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9976544
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=134.00 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=77.4
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc---
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIE-EGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL--- 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~-~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~--- 142 (901)
.....++|||+|||+++|+++|+++|++||+|. +|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445689999999999999999999999999999 9999999999999999999999999999999976 67799999
Q ss_pred -ccccccccc
Q 045707 143 -AVCNLACEG 151 (901)
Q Consensus 143 -i~v~~a~~~ 151 (901)
|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999988654
No 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=1.9e-15 Score=138.96 Aligned_cols=87 Identities=23% Similarity=0.304 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
...+..++|||+|||.++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999775 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99876544
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=134.45 Aligned_cols=87 Identities=38% Similarity=0.581 Sum_probs=80.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765544
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=137.36 Aligned_cols=86 Identities=30% Similarity=0.467 Sum_probs=78.7
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
...+...++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567889999999999999999999999999999999999989999999999999999999999865 7789999999
Q ss_pred ccccccc
Q 045707 145 CNLACEG 151 (901)
Q Consensus 145 v~~a~~~ 151 (901)
|.++..+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998654
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=135.59 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999975 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99876543
No 85
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=135.20 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|.++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456899999999999999999999999999999999999989999999999999999999999964 77899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99976543
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=136.45 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=79.0
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
...+.++|||+|||.++|+++|+++|++||+|.+|.+++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999966 678999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9876544
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=2.4e-15 Score=147.82 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=79.2
Q ss_pred EEecchhhHHHHhcCCc-cc--ccccccccccccccC--------------CCcCCCCccccceEEEcCCCCCCcHHHHH
Q 045707 119 ITYKHMESTQSALRAPS-KL--IDGRLAVCNLACEGL--------------SGVSAVPDLAQRKLYIGGLSPEVTTEVLL 181 (901)
Q Consensus 119 V~F~~~~~A~~Al~~~~-~~--l~g~~i~v~~a~~~~--------------~~~~~~~~~~~~~lfV~nLp~~~tee~L~ 181 (901)
.+|++.++|+.|+..+. .. -.|+.....++.... ...........++|||+|||.++|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78889999999888763 22 234444444321100 11111223456789999999999999999
Q ss_pred hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCCCCCC
Q 045707 182 NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTHKGKP 246 (901)
Q Consensus 182 ~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~~~~~ 246 (901)
++|++||.|..|.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|+.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999976 999999999998765543
No 88
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=6.4e-15 Score=135.44 Aligned_cols=81 Identities=38% Similarity=0.623 Sum_probs=76.5
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|..|.+..++ +|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 8999999999999999999999999976 999999999998
Q ss_pred CCC
Q 045707 241 THK 243 (901)
Q Consensus 241 ~~~ 243 (901)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 89
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=136.75 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=78.5
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.......++|||+|||.++|+++|+++|++||.|.+|.++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 334456789999999999999999999999999999999999999999999999999999999999964 7789999999
Q ss_pred ccccccc
Q 045707 145 CNLACEG 151 (901)
Q Consensus 145 v~~a~~~ 151 (901)
|.++..+
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9998654
No 90
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=134.17 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=77.0
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKA---TGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~---~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
.+.++|||+|||+++|+++|+++|++||+|.+|++++++. |++++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6689999999999999999999975 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876544
No 91
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=135.25 Aligned_cols=87 Identities=32% Similarity=0.552 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
....+.++|||+|||+++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557899999999999999999999999999999999999989999999999999999999999765 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99876544
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5e-15 Score=136.17 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=80.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999989999999999999999999999999976 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 98765443
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.9e-15 Score=134.69 Aligned_cols=84 Identities=25% Similarity=0.378 Sum_probs=78.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999999866 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
|.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 94
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=3.1e-15 Score=137.47 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=74.2
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
..+|||+|||+++|+++|+++|++||.|.+|+++.|+ +.++|||||+|.+.++|++|++.+++. ++|++|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999986 458999999999999999999999976 9999999999987
Q ss_pred CCCC
Q 045707 242 HKGK 245 (901)
Q Consensus 242 ~~~~ 245 (901)
+..+
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 95
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=1.6e-15 Score=134.50 Aligned_cols=81 Identities=23% Similarity=0.495 Sum_probs=75.9
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~ 150 (901)
.++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999999999989999999999999999999999865 6789999999999876
Q ss_pred cC
Q 045707 151 GL 152 (901)
Q Consensus 151 ~~ 152 (901)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 96
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=8.6e-15 Score=131.68 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=78.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..+ +|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999998 7999999999999999999999999966 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98766544
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=4.5e-15 Score=129.03 Aligned_cols=80 Identities=33% Similarity=0.617 Sum_probs=75.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.+++.++|+.|.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999988666699999999986
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=3.8e-16 Score=161.52 Aligned_cols=81 Identities=27% Similarity=0.318 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCC--ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHG--EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
..++|||+||++++|+++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+|++.||+. |+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999999999999999999999999999999999965 9999999999
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
|.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=132.02 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||+++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999989999999999999999999999976 67799999998876
Q ss_pred c
Q 045707 149 C 149 (901)
Q Consensus 149 ~ 149 (901)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=134.06 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE--------GAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKL 137 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~ 137 (901)
......++|||+|||.++|+++|+++|++||.|.+ ++++.++.+|+++|||||+|.+.++|++|++.+ +..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567899999999999999999999999999999 999999989999999999999999999999864 778
Q ss_pred ccccccccccc
Q 045707 138 IDGRLAVCNLA 148 (901)
Q Consensus 138 l~g~~i~v~~a 148 (901)
+.|+.|.|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999876
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=133.22 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccc-cccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRV-HGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKL-IDGRLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~-l~g~~i~v 145 (901)
....++|||+|||+++|+++|+++|++ ||.|.+|+|++++ +|+++|||||+|.+.++|++|++.+ +.. +.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 9999999999999999999999976 667 99999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99876544
No 102
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-15 Score=134.04 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=80.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC------CC-cCCc
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH------KT-LGGR 232 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~------~~-i~g~ 232 (901)
....++|||+|||.++|+++|+++|++||.|..|.+..++.+|.++|||||+|.+.++|.+|++.+| +. ++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999999999999999999999999999999998 66 9999
Q ss_pred EEEEEeccCCCCCC
Q 045707 233 TIIVKLADTHKGKP 246 (901)
Q Consensus 233 ~l~V~~a~~~~~~~ 246 (901)
.|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998765544
No 103
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=8.5e-15 Score=132.22 Aligned_cols=86 Identities=29% Similarity=0.442 Sum_probs=78.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC---cEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG---RTII 235 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g---~~l~ 235 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|.+|++.+|+. +.| ++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 6999999999999999999999999975 777 9999
Q ss_pred EEeccCCCCCC
Q 045707 236 VKLADTHKGKP 246 (901)
Q Consensus 236 V~~a~~~~~~~ 246 (901)
|.+|.++..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999876554
No 104
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=3.4e-15 Score=132.41 Aligned_cols=81 Identities=22% Similarity=0.478 Sum_probs=77.2
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
+++|||+|||.++++++|+++|++||.|.++++..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999999999999999999999999999999999976 9999999999987
Q ss_pred CC
Q 045707 242 HK 243 (901)
Q Consensus 242 ~~ 243 (901)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 105
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=137.08 Aligned_cols=87 Identities=24% Similarity=0.386 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-------ccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-------SKLID 139 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-------~~~l~ 139 (901)
......++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|++.+ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34556899999999999999999999999999999999999999999999999999999999999875 56799
Q ss_pred ccccccccccccCC
Q 045707 140 GRLAVCNLACEGLS 153 (901)
Q Consensus 140 g~~i~v~~a~~~~~ 153 (901)
|+.|.|.++.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999876543
No 106
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-15 Score=133.56 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC---cccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP---SKLIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~---~~~l~g~~i~ 144 (901)
.+...++|||+|||+++|+++|+++|++||+|.+|+|+++ ||||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557899999999999999999999999999999999865 699999999999999999954 3679999999
Q ss_pred cccccccCCC
Q 045707 145 CNLACEGLSG 154 (901)
Q Consensus 145 v~~a~~~~~~ 154 (901)
|.++..+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999765443
No 107
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=2.7e-15 Score=169.85 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=112.4
Q ss_pred HHHHHHhhcCCeeEEEEEe----cC-CCCCcceEE--EEEecchhhHHHHhcCCcc-ccccccc-----------ccccc
Q 045707 88 TLCAAFRVHGEIEEGAVIY----DK-ATGKSRGYG--FITYKHMESTQSALRAPSK-LIDGRLA-----------VCNLA 148 (901)
Q Consensus 88 ~L~~~F~~~G~V~~v~i~~----~~-~~g~~kG~a--FV~F~~~~~A~~Al~~~~~-~l~g~~i-----------~v~~a 148 (901)
.|.++|..+|+|..|..+. ++ .+....|++ |+.|.+..++..++..++. ...++.. .-...
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999998774332 21 122233444 8889888777666654321 1111100 00000
Q ss_pred cccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 149 CEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 149 ~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...............++|||+|||.++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.||+.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 00011111122334689999999999999999999999999999999999989999999999999999999999999976
Q ss_pred -cCCcEEEEEeccCCCC
Q 045707 229 -LGGRTIIVKLADTHKG 244 (901)
Q Consensus 229 -i~g~~l~V~~a~~~~~ 244 (901)
|+|+.|.|.|+..+..
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 9999999999986544
No 108
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.58 E-value=1.3e-15 Score=140.17 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=91.3
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||.++|+++|+++|++||.|.+|.++++ +.++|||||+|.+.++|.+|++.+ |..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999864 556999999999999999999965 7789999999999
Q ss_pred ccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCc
Q 045707 148 ACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGE 189 (901)
Q Consensus 148 a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~ 189 (901)
+...... ++++...+++++.++|++||.
T Consensus 82 a~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8654321 567888899999999999984
No 109
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=136.33 Aligned_cols=83 Identities=33% Similarity=0.460 Sum_probs=76.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||.++|+++|+++|++||.|.+|.++.++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 9999999999999999999999876 6789999999999
Q ss_pred ccccC
Q 045707 148 ACEGL 152 (901)
Q Consensus 148 a~~~~ 152 (901)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87544
No 110
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=134.04 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=77.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 9999999999999999999999775 678999999999
Q ss_pred cccccC
Q 045707 147 LACEGL 152 (901)
Q Consensus 147 ~a~~~~ 152 (901)
++....
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 986543
No 111
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=3.2e-15 Score=129.29 Aligned_cols=80 Identities=40% Similarity=0.634 Sum_probs=75.9
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.+|+. ++|++|.|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999976 99999999997
Q ss_pred c
Q 045707 240 D 240 (901)
Q Consensus 240 ~ 240 (901)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=4.5e-15 Score=133.52 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++|| |.+|++++++.+|+++|||||+|.+.++|++|++.++..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345678999999999999999999999997 9999999999999999999999999999999995557889999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 876543
No 113
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.2e-14 Score=130.66 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=77.8
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
+....++|||+|||.++++++|+++|++|| |..|.++.++.+|+++|||||+|.+.++|++|+ .+|+. ++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345578999999999999999999999997 999999999999999999999999999999999 78866 999999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 114
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=4.7e-15 Score=134.17 Aligned_cols=87 Identities=32% Similarity=0.379 Sum_probs=79.8
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c---CCcEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L---GGRTI 234 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i---~g~~l 234 (901)
.....++|||+|||.++|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.+|+. + .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999975 5 88999
Q ss_pred EEEeccCCCCC
Q 045707 235 IVKLADTHKGK 245 (901)
Q Consensus 235 ~V~~a~~~~~~ 245 (901)
.|.++.++..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876544
No 115
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=136.52 Aligned_cols=88 Identities=28% Similarity=0.360 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999865 67899999999
Q ss_pred ccccccCCC
Q 045707 146 NLACEGLSG 154 (901)
Q Consensus 146 ~~a~~~~~~ 154 (901)
.++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 998765443
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=131.65 Aligned_cols=84 Identities=29% Similarity=0.464 Sum_probs=77.5
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCC---CCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKD---TNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~---tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
..++|||+|||.++|+++|+++|++||.|..+.+..++. ++.++|||||+|.+.++|++|++.+|+. ++|+.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 478999999999999999999999999999999999876 6699999999999999999999999976 999999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
++.++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 117
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.1e-15 Score=130.50 Aligned_cols=82 Identities=33% Similarity=0.447 Sum_probs=77.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|++|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 446789999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccC
Q 045707 239 ADT 241 (901)
Q Consensus 239 a~~ 241 (901)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 118
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=2.4e-15 Score=149.08 Aligned_cols=122 Identities=22% Similarity=0.329 Sum_probs=98.4
Q ss_pred CCChhhhcccCCCCCHHHHHHHHhhhcCCCcc-h-------------------------hHHhhh---------------
Q 045707 26 SSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPS-I-------------------------AEEIKS--------------- 64 (901)
Q Consensus 26 ~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~-~-------------------------~~~~~~--------------- 64 (901)
+...+||++|+.++++++|.+.|+++|.+... + ...+..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 34689999999999999999999999977210 0 001110
Q ss_pred ------ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccc
Q 045707 65 ------VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKL 137 (901)
Q Consensus 65 ------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~ 137 (901)
........++|||+|||.++|+++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|++.+ |..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 11112256899999999999999999999999999999999996 7999999999999999999999886 444
Q ss_pred cc---ccccccccc
Q 045707 138 ID---GRLAVCNLA 148 (901)
Q Consensus 138 l~---g~~i~v~~a 148 (901)
+. |++|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 44 489999876
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=132.74 Aligned_cols=87 Identities=26% Similarity=0.445 Sum_probs=79.8
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeecc-CCCCCceeEEEEEeCCHHHHHHHHHcC-CCC-cCCcEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYD-KDTNESRGFGFVTYKTVEAAKKAVDDP-HKT-LGGRTII 235 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d-~~tg~~kG~aFV~F~~~e~A~~Al~~l-~~~-i~g~~l~ 235 (901)
.....++|||+|||.++|+++|+++|++||.|..|.++.+ +.+|.++|||||+|.+.++|.+|++.+ |+. ++|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 788999999999999999999999999 755 9999999
Q ss_pred EEeccCCCCC
Q 045707 236 VKLADTHKGK 245 (901)
Q Consensus 236 V~~a~~~~~~ 245 (901)
|.|+.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876544
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=4.3e-15 Score=135.04 Aligned_cols=85 Identities=36% Similarity=0.543 Sum_probs=77.7
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEecc
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLAD 240 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~ 240 (901)
...++|||+|||.++|+++|+++|++||.|.+|++..++.+|.++|||||+|.+.++|.+|++.++..++|+.|.|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 45789999999999999999999999999999999999999999999999999999999999998866999999999998
Q ss_pred CCCCC
Q 045707 241 THKGK 245 (901)
Q Consensus 241 ~~~~~ 245 (901)
++..+
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 121
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=133.55 Aligned_cols=83 Identities=24% Similarity=0.382 Sum_probs=76.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999999989999999999999999999999975 678999999999
Q ss_pred cccc
Q 045707 147 LACE 150 (901)
Q Consensus 147 ~a~~ 150 (901)
++..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8753
No 122
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=132.26 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=77.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|.++.+..++ +|+++|||||+|.+.++|++|++.+|+. ++|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999997 4999999999999999999999999976 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 8765433
No 123
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=2.6e-15 Score=135.90 Aligned_cols=87 Identities=28% Similarity=0.269 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccc---cccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLI---DGRL 142 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l---~g~~ 142 (901)
..+...++|||+|||.++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 45567899999999999999999999999999999999999989999999999999999999999976 5566 8899
Q ss_pred cccccccccCC
Q 045707 143 AVCNLACEGLS 153 (901)
Q Consensus 143 i~v~~a~~~~~ 153 (901)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999876544
No 124
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=4.5e-15 Score=134.04 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc---cc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG---RL 142 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g---~~ 142 (901)
......++|||+|||.++|+++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.+ +..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999997 8999999999999999999999875 566787 99
Q ss_pred cccccccccCC
Q 045707 143 AVCNLACEGLS 153 (901)
Q Consensus 143 i~v~~a~~~~~ 153 (901)
|.|.++.....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999876544
No 125
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=7.2e-16 Score=137.85 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCc------CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc-cc
Q 045707 71 VHRKLFVRGLAW------NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG-RL 142 (901)
Q Consensus 71 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g-~~ 142 (901)
.+++|||+|||. ++++++|+++|++||+|.+|+|++++.||+++|||||+|.+.++|++|++.+ +..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999999999999999999999999999865 678999 99
Q ss_pred cccccccc
Q 045707 143 AVCNLACE 150 (901)
Q Consensus 143 i~v~~a~~ 150 (901)
|.|.++.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99998864
No 126
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.3e-15 Score=132.82 Aligned_cols=86 Identities=35% Similarity=0.570 Sum_probs=79.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.+|+. ++|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999965 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 127
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.4e-15 Score=130.08 Aligned_cols=82 Identities=23% Similarity=0.395 Sum_probs=77.1
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred ecc
Q 045707 238 LAD 240 (901)
Q Consensus 238 ~a~ 240 (901)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=135.22 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCcceEEEEEecchhhHHHHhcCC--ccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYD-KATGKSRGYGFITYKHMESTQSALRAP--SKLIDGRLA 143 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~-~~~g~~kG~aFV~F~~~~~A~~Al~~~--~~~l~g~~i 143 (901)
..+...++|||+|||.++|+++|+++|++||.|.+|+++++ +.+|+++|||||+|.+.++|++|++.+ +..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 45567899999999999999999999999999999999999 789999999999999999999999985 678999999
Q ss_pred ccccccccCC
Q 045707 144 VCNLACEGLS 153 (901)
Q Consensus 144 ~v~~a~~~~~ 153 (901)
.|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999976543
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=133.02 Aligned_cols=81 Identities=28% Similarity=0.452 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
..+..++|||+|||.++|+++|+++|++||+|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4567889999999999999999999999999999999999989999999999999999999999865 677999999998
Q ss_pred cc
Q 045707 147 LA 148 (901)
Q Consensus 147 ~a 148 (901)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=1.7e-15 Score=135.37 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=76.7
Q ss_pred ccceEEEcCCCC------CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC-cE
Q 045707 162 AQRKLYIGGLSP------EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG-RT 233 (901)
Q Consensus 162 ~~~~lfV~nLp~------~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g-~~ 233 (901)
.+++|||+|||. ++++++|+++|++||.|.+++++.++.||+++|||||+|.+.++|.+|++.+|+. ++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999999999999999999999999999999999999976 998 99
Q ss_pred EEEEeccCC
Q 045707 234 IIVKLADTH 242 (901)
Q Consensus 234 l~V~~a~~~ 242 (901)
|.|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=134.03 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++||. .+|+|++|+ +|+++|||||+|.+.++|++|++.++..+.|+.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 4456789999999999999999999999995 599999998 99999999999999999999998778889999999988
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7644
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.4e-15 Score=133.19 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE-EEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE-GAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
.....++|||+|||+++|+++|+++|++||.|.+ |.|+.+ .+|+++|||||+|.+.++|++|++.++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 888888 69999999999999999999999998888999999998
Q ss_pred ccccc
Q 045707 147 LACEG 151 (901)
Q Consensus 147 ~a~~~ 151 (901)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87543
No 133
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=130.92 Aligned_cols=82 Identities=24% Similarity=0.388 Sum_probs=76.8
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeE--------eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE--------GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
.....++|||+|||.++++++|+++|++||.|.. +++..++.+|+++|||||+|.+.++|++|++.+|+. +
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 999999999999999999999999999999999976 9
Q ss_pred CCcEEEEEecc
Q 045707 230 GGRTIIVKLAD 240 (901)
Q Consensus 230 ~g~~l~V~~a~ 240 (901)
+|+.|.|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 134
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=133.00 Aligned_cols=84 Identities=31% Similarity=0.546 Sum_probs=78.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+++. ++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98654
No 135
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=5.7e-15 Score=134.59 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=79.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 136
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.3e-15 Score=136.22 Aligned_cols=83 Identities=34% Similarity=0.571 Sum_probs=77.7
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
..++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++.++..++|+.|.|.++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999999899999999999999999999999977889999999999876
Q ss_pred cCC
Q 045707 151 GLS 153 (901)
Q Consensus 151 ~~~ 153 (901)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 544
No 137
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=130.80 Aligned_cols=86 Identities=23% Similarity=0.460 Sum_probs=78.5
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCC-CCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDT-NESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
+....++|||+|||.++|+++|+++|++|| |..|.++.++.+ |+++|||||+|.+.++|++|+ .+|+. ++|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 344578999999999999999999999999 999999999987 999999999999999999999 88865 99999999
Q ss_pred EeccCCCCCC
Q 045707 237 KLADTHKGKP 246 (901)
Q Consensus 237 ~~a~~~~~~~ 246 (901)
.++.++..+.
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998765543
No 138
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=2.6e-15 Score=136.87 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=79.6
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
........++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..++|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3345567789999999999999999999999999999999999989999999999999999999999964 778999999
Q ss_pred ccccccccC
Q 045707 144 VCNLACEGL 152 (901)
Q Consensus 144 ~v~~a~~~~ 152 (901)
.|.++....
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999986543
No 139
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=144.23 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHG--EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
...++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999999999999999999999999999999999996 678999999999
Q ss_pred cccc
Q 045707 147 LACE 150 (901)
Q Consensus 147 ~a~~ 150 (901)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8854
No 140
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.9e-15 Score=132.80 Aligned_cols=87 Identities=33% Similarity=0.517 Sum_probs=79.6
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++. ++. ++|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999 765 999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998765443
No 141
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=1.9e-14 Score=134.18 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=78.5
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++++++|+++|++||.|..+.+..++ +|+++|||||+|.+.++|.+|++.+|+. ++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 8999999999999999999999999976 999999999
Q ss_pred eccCCCC
Q 045707 238 LADTHKG 244 (901)
Q Consensus 238 ~a~~~~~ 244 (901)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9986543
No 142
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.8e-15 Score=132.79 Aligned_cols=85 Identities=22% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||+++|+++|+++|++||.|.+|+++.+ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34457899999999999999999999999999999999998 8999999999999999999999975 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99976544
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=3.8e-15 Score=137.64 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.++..++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999999889999999999999999999999976 678999999998
Q ss_pred cc
Q 045707 147 LA 148 (901)
Q Consensus 147 ~a 148 (901)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 144
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=4.4e-15 Score=139.15 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||+++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999965 67899999999
Q ss_pred cccccc
Q 045707 146 NLACEG 151 (901)
Q Consensus 146 ~~a~~~ 151 (901)
.++..+
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998654
No 145
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=7.1e-15 Score=140.08 Aligned_cols=88 Identities=27% Similarity=0.350 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
..+...++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.++|.+|++.+ +..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556799999999999999999999999999999999999989999999999999999999999975 67799999999
Q ss_pred ccccccCCC
Q 045707 146 NLACEGLSG 154 (901)
Q Consensus 146 ~~a~~~~~~ 154 (901)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999765443
No 146
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=133.28 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT-GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~-g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
....++|||+|||+++|+++|+++|++|| |.+|+|++++.+ |+++|||||+|.+.++|++|+..++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34578999999999999999999999999 999999999887 9999999999999999999994457889999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.....
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876544
No 147
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=2.2e-14 Score=136.68 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=80.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|+.||.|.+|.+..++.+|+++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 148
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=128.54 Aligned_cols=86 Identities=27% Similarity=0.402 Sum_probs=78.0
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
.....++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++. .+.++|+.|.|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 344578999999999999999999999999999999999999999999999999999999999995 3459999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876543
No 149
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=8.4e-15 Score=148.44 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||.++|+++|+++|++||.|.+|.+.+++.+|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999975 77899999999998
Q ss_pred cccC
Q 045707 149 CEGL 152 (901)
Q Consensus 149 ~~~~ 152 (901)
....
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 150
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=130.72 Aligned_cols=85 Identities=26% Similarity=0.501 Sum_probs=78.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhcc-CCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-C-cCCcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGR-HGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-T-LGGRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~-fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~-i~g~~l~V~ 237 (901)
...++|||+|||.++|+++|+++|++ ||.|.++.++.++ +|.++|||||+|.+.++|.+|++.+++ . ++|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999998 899999999999999999999999995 5 899999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
++.++..+.
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998765443
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.1e-15 Score=137.22 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEI-EEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V-~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~ 146 (901)
.....++|||+|||+++|+++|+++|++||.| .+|+|++|+ +|+++|||||+|.+.++|++|++.++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 899999998 9999999999999999999999997888999999999
Q ss_pred ccccc
Q 045707 147 LACEG 151 (901)
Q Consensus 147 ~a~~~ 151 (901)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 152
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=130.40 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.+...++|||+|||+++|+++|+++|++||+|.+|++++++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 44567899999999999999999999999999999999997 4999999999999999999999964 778999999999
Q ss_pred cccc
Q 045707 147 LACE 150 (901)
Q Consensus 147 ~a~~ 150 (901)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 153
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.55 E-value=6.2e-15 Score=128.41 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCC-ceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNE-SRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~-~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
..++|||+|||.++|+++|+++|++||.|.++.+..+..++. ++|||||+|.+.++|.+|++.+|+. ++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999999987766 9999999999999999999999976 99999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 154
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=7.6e-15 Score=137.54 Aligned_cols=85 Identities=33% Similarity=0.454 Sum_probs=79.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..|.+..++.+|+++|||||+|.+.++|++|++.+|+. ++|++|.|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999966 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.+++.
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987653
No 155
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=133.00 Aligned_cols=86 Identities=28% Similarity=0.393 Sum_probs=79.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCcee--------EeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE--------EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG 230 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~ 230 (901)
....++|||+|||.++|+++|+++|++||.|. .+++..++.+|+++|||||+|.+.++|.+|++.+|+. ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999999 6999999889999999999999999999999999976 99
Q ss_pred CcEEEEEeccCCCCC
Q 045707 231 GRTIIVKLADTHKGK 245 (901)
Q Consensus 231 g~~l~V~~a~~~~~~ 245 (901)
|+.|.|.++.++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876544
No 156
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5e-15 Score=135.69 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=78.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCee--------EEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIE--------EGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLI 138 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l 138 (901)
.+...++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|+++|||||+|.+.++|++|++.+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 6999999889999999999999999999999964 7789
Q ss_pred cccccccccccccCC
Q 045707 139 DGRLAVCNLACEGLS 153 (901)
Q Consensus 139 ~g~~i~v~~a~~~~~ 153 (901)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999876544
No 157
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.8e-15 Score=131.16 Aligned_cols=79 Identities=19% Similarity=0.374 Sum_probs=73.7
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|.+|.++.|+. |.++|||||+|.+.++|.+|++ +++ .++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999999999987 9999999999999999999999 665 599999999997
Q ss_pred cC
Q 045707 240 DT 241 (901)
Q Consensus 240 ~~ 241 (901)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 158
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=129.71 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=77.7
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCcee-EeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcE----E
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE-EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRT----I 234 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~----l 234 (901)
...++|||+|||.++++++|+++|++||.|. +++++.++.+|.++|||||+|.+.++|++|++.+|+. ++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 9999999999999999999999999999999999976 99998 9
Q ss_pred EEEeccCCC
Q 045707 235 IVKLADTHK 243 (901)
Q Consensus 235 ~V~~a~~~~ 243 (901)
+|.||.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997653
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=1e-14 Score=128.26 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||+|.+|+++++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999984 8999999999999999999999975 678999999999
Q ss_pred cccccC
Q 045707 147 LACEGL 152 (901)
Q Consensus 147 ~a~~~~ 152 (901)
++....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 986543
No 160
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=140.76 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=76.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE--EEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cc----cccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE--GAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SK----LIDG 140 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~----~l~g 140 (901)
.+...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+|++.+ +. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4456789999999999999999999999999976 99999999999999999999999 999999887 56 8999
Q ss_pred cccccccccccC
Q 045707 141 RLAVCNLACEGL 152 (901)
Q Consensus 141 ~~i~v~~a~~~~ 152 (901)
+.|.|.++....
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999987643
No 161
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-15 Score=135.30 Aligned_cols=83 Identities=30% Similarity=0.503 Sum_probs=76.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999989999999999999999999999865 67899999999998
Q ss_pred cccC
Q 045707 149 CEGL 152 (901)
Q Consensus 149 ~~~~ 152 (901)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 6543
No 162
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=132.02 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC-eeEEEEE-ecCCCCCcceEEEEEecchhhHHHHhcCCc---ccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGE-IEEGAVI-YDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~-~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~ 142 (901)
...+.++|||+|||+++|+++|+++|++||. |.+|.++ .++.+|+++|||||+|.+.++|.+|++.++ ..+.|+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3456789999999999999999999999998 9999998 888889999999999999999999999863 5799999
Q ss_pred cccccccccCC
Q 045707 143 AVCNLACEGLS 153 (901)
Q Consensus 143 i~v~~a~~~~~ 153 (901)
|.|.++.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 163
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=2.9e-15 Score=133.94 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDK-ATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~-~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
....++|||+|||.++|+++|+++|++|| |.+|++++++ .+|+++|||||+|.+.++|++|+..++..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 45679999999999999999999999999 9999999998 589999999999999999999995557889999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+..+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 164
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=2.5e-15 Score=131.61 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=71.9
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccccc
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLACEG 151 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~~~ 151 (901)
++|||+|||.++|+++|+++|++||+|.+|++++++.+|+++|||||+|.+.+ |.+|++.+ +..++|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999986 67799999999998654
Q ss_pred C
Q 045707 152 L 152 (901)
Q Consensus 152 ~ 152 (901)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 165
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.8e-15 Score=132.19 Aligned_cols=85 Identities=28% Similarity=0.536 Sum_probs=79.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
+...++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345789999999999999999999999999999999999989999999999999999999999999976 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987654
No 166
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.2e-14 Score=126.81 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=75.4
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|++|+ .+|+. ++|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999989999999999999999999999 88865 999999999987
Q ss_pred CC
Q 045707 241 TH 242 (901)
Q Consensus 241 ~~ 242 (901)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 167
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=7.4e-15 Score=123.73 Aligned_cols=74 Identities=32% Similarity=0.666 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
+|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|++|++ +++. ++|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 7754 99999999986
No 168
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=5.7e-15 Score=132.59 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=75.5
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
+...++|||+|||.++|+++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|++ .+..++|+.+.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3456899999999999999999999999999999999998 99999999999999999999999 778899999999988
Q ss_pred ccc
Q 045707 149 CEG 151 (901)
Q Consensus 149 ~~~ 151 (901)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 169
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=127.06 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++| .|.+|+++++ .+|+++|||||+|.+.++|++|++.++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEE
Confidence 44568999999999999999999999999 9999999999 699999999999999999999999557889999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8654
No 170
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=129.93 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=77.3
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCc-eeEeeee-ccCCCCCceeEEEEEeCCHHHHHHHHHcCC--CC-cCCcEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGE-IEEGSVA-YDKDTNESRGFGFVTYKTVEAAKKAVDDPH--KT-LGGRTIIV 236 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~v~i~-~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~--~~-i~g~~l~V 236 (901)
..++|||+|||.++|+++|+++|++||. |.++.++ .++.+|.++|||||+|.+.++|.+|++.++ +. ++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999998 888889999999999999999999999995 34 99999999
Q ss_pred EeccCCCCC
Q 045707 237 KLADTHKGK 245 (901)
Q Consensus 237 ~~a~~~~~~ 245 (901)
.||.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876543
No 171
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.2e-14 Score=135.60 Aligned_cols=81 Identities=22% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~~ 151 (901)
.++|||+|||.++|+++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.++..++|+.|.|.++...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCC
Confidence 58999999999999999999999999999999999988999999999999999999999955578899999999998654
Q ss_pred C
Q 045707 152 L 152 (901)
Q Consensus 152 ~ 152 (901)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.8e-15 Score=125.05 Aligned_cols=76 Identities=41% Similarity=0.611 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
++|||+|||.++++++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|.+|++.++..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999996699999999987
No 173
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=5.3e-15 Score=128.85 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCC-cceEEEEEecchhhHHHHhcC-Cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGK-SRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~-~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~v~~ 147 (901)
...++|||+|||.++|+++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999987766 999999999999999999996 47889999999998
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8543
No 174
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.1e-14 Score=127.24 Aligned_cols=86 Identities=26% Similarity=0.444 Sum_probs=77.3
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|++||.|..|++..++. .++|||||+|.+.++|++|++.+|+. ++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999864 38999999999999999999999976 999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
++.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998765443
No 175
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-15 Score=132.30 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=76.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||+++|+++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3455789999999999999999999999999999999999889999999999999999999999776 578999999999
Q ss_pred cccc
Q 045707 147 LACE 150 (901)
Q Consensus 147 ~a~~ 150 (901)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8754
No 176
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=9.1e-15 Score=125.20 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=66.2
Q ss_pred CCeEEEeCCCcCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccc-cc
Q 045707 72 HRKLFVRGLAWNT------TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGR-LA 143 (901)
Q Consensus 72 ~~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~-~i 143 (901)
+++|||+|||.++ |+++|+++|++||+|.+|.++ +.+|+++|||||+|.+.++|++|++.+ |..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 358999999999999999999999986 6779999 88
Q ss_pred ccc
Q 045707 144 VCN 146 (901)
Q Consensus 144 ~v~ 146 (901)
.|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 177
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=2.8e-14 Score=138.76 Aligned_cols=85 Identities=28% Similarity=0.373 Sum_probs=79.4
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.+|+. ++|+.|.|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999976 99999999999
Q ss_pred cCCCCC
Q 045707 240 DTHKGK 245 (901)
Q Consensus 240 ~~~~~~ 245 (901)
.+....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 875543
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=1.1e-14 Score=134.78 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCee--EEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIE--EGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
.....++|||+|||+++|+++|+++|++| .|. +|+|++|+. |+++|||||+|.+.++|++|++.++..++||.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34567899999999999999999999999 566 899999985 99999999999999999999998888899999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87743
No 179
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=128.51 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=77.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999976 9999999999
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 180
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=127.92 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=75.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|.++.+..++. |+++|||||+|.+.++|.+|++.+|+. ++|+.|.|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44678999999999999999999999999999999999986 999999999999999999999999966 9999999999
Q ss_pred ccC
Q 045707 239 ADT 241 (901)
Q Consensus 239 a~~ 241 (901)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 181
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=7.6e-15 Score=138.14 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGE---IEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLA 143 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i 143 (901)
....+.++|||+|||+++|+++|+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++|++.++..++|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34456789999999999999999999999999 89999999985 999999999999999999999965788999999
Q ss_pred ccccccc
Q 045707 144 VCNLACE 150 (901)
Q Consensus 144 ~v~~a~~ 150 (901)
.|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9988743
No 182
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=132.36 Aligned_cols=85 Identities=34% Similarity=0.542 Sum_probs=78.4
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++. ++. ++|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999999999999999999999999999999 754 99999999999
Q ss_pred cCCCCCC
Q 045707 240 DTHKGKP 246 (901)
Q Consensus 240 ~~~~~~~ 246 (901)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8765543
No 183
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.53 E-value=1e-14 Score=132.20 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=75.3
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||+++|+++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999998 9999999999999999999999974 788999999998
Q ss_pred ccc
Q 045707 147 LAC 149 (901)
Q Consensus 147 ~a~ 149 (901)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 184
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.7e-14 Score=133.21 Aligned_cols=81 Identities=27% Similarity=0.378 Sum_probs=76.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|++|++.+|+. ++|++|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445789999999999999999999999999999999999989999999999999999999999999976 9999999999
Q ss_pred cc
Q 045707 239 AD 240 (901)
Q Consensus 239 a~ 240 (901)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 185
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=123.95 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=75.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++| .|..++++.+ .+|+++|||||+|.+.++|.+|++ +|+. ++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 679999999999999999999999 9976 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 186
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.1e-14 Score=127.24 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=76.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..|.+..++. .++|||||+|.+.++|++|++.+|+. +.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44578999999999999999999999999999999999864 36899999999999999999999976 9999999999
Q ss_pred ccCCCCCC
Q 045707 239 ADTHKGKP 246 (901)
Q Consensus 239 a~~~~~~~ 246 (901)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 98765443
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=136.80 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=77.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeE--eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-----CcCCc
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE--GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-----TLGGR 232 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-----~i~g~ 232 (901)
....++|||+|||+++|+++|+++|++||.|.. |++++|+.+|+++|||||+|.+. +|.+|++.+|+ .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 445789999999999999999999999999977 99999999999999999999999 99999999995 69999
Q ss_pred EEEEEeccCCCCC
Q 045707 233 TIIVKLADTHKGK 245 (901)
Q Consensus 233 ~l~V~~a~~~~~~ 245 (901)
.|.|+++.+++.+
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999875443
No 188
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.2e-15 Score=134.12 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
..++|||+|||.++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|+..++..+.|+.|.|.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 35899999999999999999999999999999999999899999999999999999999995557889999999999865
Q ss_pred c
Q 045707 151 G 151 (901)
Q Consensus 151 ~ 151 (901)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 189
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=128.97 Aligned_cols=85 Identities=20% Similarity=0.411 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++.+ +..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456789999999999999999999999999999999999853 38999999999999999999975 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99976544
No 190
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=128.53 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
..+...++|||+|||+++|+++|+++|++||.|.+|++++++. .++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456789999999999999999999999999999999999853 37899999999999999999965 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99876543
No 191
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1e-14 Score=134.55 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGE---IEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
....++|||+|||+++|+++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|++|++.++..++|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999999 89999999985 99999999999999999999996688899999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 192
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=127.17 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=74.3
Q ss_pred cccceEEEcCCCCCCcHHHHH----hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLL----NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
...++|||+|||.++++++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|++|++.+|+. ++|++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346899999999999999999 99999999999999998765 889999999999999999999976 9999999
Q ss_pred EEeccCCCC
Q 045707 236 VKLADTHKG 244 (901)
Q Consensus 236 V~~a~~~~~ 244 (901)
|.+|.++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999976543
No 193
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=1e-14 Score=136.36 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=79.6
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.......++|||+|||+++|+++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 345556889999999999999999999999999999999999889999999999999999999999864 7889999999
Q ss_pred cccccccCC
Q 045707 145 CNLACEGLS 153 (901)
Q Consensus 145 v~~a~~~~~ 153 (901)
|.++.....
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999875443
No 194
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=4.2e-15 Score=131.57 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcC-Cccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRA-PSKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~-~~~~l~g~~i~v~~ 147 (901)
.+..++|||+|||+++|+++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999996 47789999999988
Q ss_pred cc
Q 045707 148 AC 149 (901)
Q Consensus 148 a~ 149 (901)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 195
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=5e-15 Score=129.63 Aligned_cols=80 Identities=31% Similarity=0.572 Sum_probs=72.5
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
++|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.+ |.+|++.+|+. ++|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999999976 99999999999865
Q ss_pred CC
Q 045707 243 KG 244 (901)
Q Consensus 243 ~~ 244 (901)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 196
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=131.40 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344568899999999999999999999999999999999997 6999999999999999999999965 77899999999
Q ss_pred cccccc
Q 045707 146 NLACEG 151 (901)
Q Consensus 146 ~~a~~~ 151 (901)
.++...
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998643
No 197
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=2e-14 Score=134.47 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=79.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++.+|+. ++|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999999999999989999999999999999999999999965 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
|.++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876544
No 198
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=138.81 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=75.8
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCC--ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHG--EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
..++|||+|||+++|+++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|.+|++.+|+. ++|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999999999999999999999999999999999976 9999999999
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 199
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=3.2e-14 Score=125.04 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=75.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..+ +|+++|||||+|.+.++|++|++.+|+. ++|+.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999874 6899999999999999999999999965 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987543
No 200
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=134.44 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCe----eEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEI----EEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVC 145 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V----~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v 145 (901)
.+.++|||+|||+++|+++|+++|++||.| .+|.|+.++ +|+++|||||+|.+.++|++|++.+++.+.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 457899999999999999999999999975 689999995 999999999999999999999999888899999999
Q ss_pred cccc
Q 045707 146 NLAC 149 (901)
Q Consensus 146 ~~a~ 149 (901)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 201
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=9e-15 Score=132.46 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=75.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC---eeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGE---IEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLA 143 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i 143 (901)
......++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|++|++.++..++|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 34456889999999999999999999999998 89999999986 999999999999999999999966788999999
Q ss_pred ccccccc
Q 045707 144 VCNLACE 150 (901)
Q Consensus 144 ~v~~a~~ 150 (901)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9988754
No 202
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=129.67 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=73.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccC-CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDK-DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
....++|||+|||.++++++|+++|++|| |.++++..++ .+|+++|||||+|.+.++|.+|+ .+|+. ++|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 9999999998 68999999999999999999999 88865 999999999
Q ss_pred eccCCC
Q 045707 238 LADTHK 243 (901)
Q Consensus 238 ~a~~~~ 243 (901)
++.++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998653
No 203
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4e-14 Score=129.09 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=76.2
Q ss_pred ccccceEEEcCCCCCCcHHHHH---hhhccCCceeEeeeeccCCCC---CceeEEEEEeCCHHHHHHHHHcCCCC-cCCc
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLL---NFFGRHGEIEEGSVAYDKDTN---ESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR 232 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~---~~F~~fG~I~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~ 232 (901)
....++|||+|||+++++++|+ ++|++||.|..+.+..++.++ +++|||||+|.+.++|++|++.||+. ++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999988754 56699999999999999999999976 9999
Q ss_pred EEEEEeccCCC
Q 045707 233 TIIVKLADTHK 243 (901)
Q Consensus 233 ~l~V~~a~~~~ 243 (901)
+|.|.+|.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 204
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=128.43 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCcCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLC----AAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.+.++|||+|||+++|+++|+ ++|++||+|.+|+++.++.+ +|||||+|.+.++|++|++.+ +..++|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 457899999999999999999 99999999999999998754 899999999999999999965 6779999999
Q ss_pred cccccccC
Q 045707 145 CNLACEGL 152 (901)
Q Consensus 145 v~~a~~~~ 152 (901)
|.++....
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99986543
No 205
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.1e-15 Score=136.31 Aligned_cols=82 Identities=16% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
....++|||+|||+++|+++|+++|++||.|.++.++.+..+|+++|||||+|.+.++|++|++.++..++|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34578999999999999999999999999999877777777999999999999999999999996678899999999988
Q ss_pred cc
Q 045707 149 CE 150 (901)
Q Consensus 149 ~~ 150 (901)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 206
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=132.43 Aligned_cols=86 Identities=26% Similarity=0.427 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999965544444447899999999999999999999999976 99999999999
Q ss_pred cCCCCCC
Q 045707 240 DTHKGKP 246 (901)
Q Consensus 240 ~~~~~~~ 246 (901)
.++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 8776544
No 207
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=128.79 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC--C-CcCCcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--K-TLGGRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~--~-~i~g~~l~V~ 237 (901)
...++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.++ + .++|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999999875 5899999999999999999775 3 3999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
||..+....
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 998765444
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=129.98 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCCcCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 68 ADPVHRKLFVRGLAWNT------TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
.+...++|||+|||+++ |+++|+++|++||.|.+|.++ +.+|+++|||||+|.+.++|++|++.+ |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999988 358999999999999999999999976 678999
Q ss_pred c-ccccccccc
Q 045707 141 R-LAVCNLACE 150 (901)
Q Consensus 141 ~-~i~v~~a~~ 150 (901)
+ .|.|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999998864
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=1.1e-14 Score=137.63 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=79.1
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.......++|||+|||+++|+++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344456789999999999999999999999999999999999889999999999999999999999976 6789999999
Q ss_pred cccccccC
Q 045707 145 CNLACEGL 152 (901)
Q Consensus 145 v~~a~~~~ 152 (901)
|.++....
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987643
No 210
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=3.5e-14 Score=128.59 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=75.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..++ +|+++|||||+|.+.++|++|++.+|+. ++|+.|.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999999976 9999999999
Q ss_pred cc
Q 045707 239 AD 240 (901)
Q Consensus 239 a~ 240 (901)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 211
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.4e-14 Score=125.32 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=74.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeE-eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE-GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~ 237 (901)
....++|||+|||+++|+++|+++|++||.|.. +.++.+ .+|+++|||||+|.+.++|++|++. ++ .++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 6899999999999999999999999 64 5999999999
Q ss_pred eccCCC
Q 045707 238 LADTHK 243 (901)
Q Consensus 238 ~a~~~~ 243 (901)
++..+.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=2.3e-14 Score=139.71 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=77.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||+++|+++|+++|++||.|.+|++++|+.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999999889999999999999999999999875 6789999999999
Q ss_pred ccccC
Q 045707 148 ACEGL 152 (901)
Q Consensus 148 a~~~~ 152 (901)
+....
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 97653
No 213
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.7e-15 Score=126.94 Aligned_cols=79 Identities=29% Similarity=0.450 Sum_probs=73.8
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.+|+. ++|+.+++.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999965 999988877654
No 214
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=131.54 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc---ccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~i~ 144 (901)
..+..++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..+.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 6999999999999999999763 469999999
Q ss_pred cccccccCCC
Q 045707 145 CNLACEGLSG 154 (901)
Q Consensus 145 v~~a~~~~~~ 154 (901)
|.++..+...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999765443
No 215
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.1e-14 Score=151.05 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=102.6
Q ss_pred CCCChhhhcccCCCCCHHHHHHHHhhhcCCCcc---------------h---hHHhhh-----------ccCCCCCCCeE
Q 045707 25 SSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYPS---------------I---AEEIKS-----------VASADPVHRKL 75 (901)
Q Consensus 25 ~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~~---------------~---~~~~~~-----------~~~~~~~~~~l 75 (901)
+..+.+||++|+.++++++|.+.|+.+|.+... . ...+.. ........++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l 99 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAAL 99 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcc
Confidence 345689999999999999999999999988210 0 011111 11123457899
Q ss_pred EEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccc-cc---ccccccccccc
Q 045707 76 FVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKL-ID---GRLAVCNLACE 150 (901)
Q Consensus 76 fV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~-l~---g~~i~v~~a~~ 150 (901)
||+|||.++|+++|+++|++||.|.+|.++.+ .+|+++|||||+|.+.++|.+|++.+ +.. +. |+++.|.++..
T Consensus 100 ~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 100 TVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 99999999999999999999999999999999 49999999999999999999999997 433 33 89999998865
Q ss_pred c
Q 045707 151 G 151 (901)
Q Consensus 151 ~ 151 (901)
.
T Consensus 179 ~ 179 (261)
T 3sde_A 179 F 179 (261)
T ss_dssp E
T ss_pred c
Confidence 4
No 216
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.51 E-value=1.6e-14 Score=122.31 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=67.5
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
....-||||||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|++|++.+ +..+.|+.|.|+.|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999864 6899999999999999999987 57799999999987
Q ss_pred c
Q 045707 149 C 149 (901)
Q Consensus 149 ~ 149 (901)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=4e-14 Score=137.73 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||+|.+|.|+.++.+++++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33456799999999999999999999999999999999999999999999999999999999999975 67899999999
Q ss_pred ccccccC
Q 045707 146 NLACEGL 152 (901)
Q Consensus 146 ~~a~~~~ 152 (901)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997543
No 218
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=131.22 Aligned_cols=85 Identities=20% Similarity=0.390 Sum_probs=76.0
Q ss_pred ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 65 VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
........++|||+|||.++|+++|+++|++||+|.+|++++++ +.++|||||+|.+.++|++|++.+ +..++|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44556678999999999999999999999999999999999985 458999999999999999999975 778999999
Q ss_pred cccccccc
Q 045707 144 VCNLACEG 151 (901)
Q Consensus 144 ~v~~a~~~ 151 (901)
.|.++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998653
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=136.74 Aligned_cols=82 Identities=30% Similarity=0.442 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||+|.++++++++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999999999999999999889999999999999999999999865 67799999999
Q ss_pred ccc
Q 045707 146 NLA 148 (901)
Q Consensus 146 ~~a 148 (901)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 220
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.8e-14 Score=127.44 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=74.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.+|+. ++|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999999976 999999999986
Q ss_pred C
Q 045707 241 T 241 (901)
Q Consensus 241 ~ 241 (901)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 221
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.50 E-value=1.2e-14 Score=122.49 Aligned_cols=75 Identities=36% Similarity=0.673 Sum_probs=71.0
Q ss_pred eEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 165 KLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 165 ~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
+|||+|||.++++++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|++..+..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999998556699999999885
No 222
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=126.28 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=69.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-c--cccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-K--LIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~--~l~g~~i~ 144 (901)
..+.+++|||+|||.++|+++|+++|++||.|.+|++++ +||||||+|.+.++|.+|++.++ . .+.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345689999999999999999999999999999999974 46999999999999999999874 3 38899999
Q ss_pred ccccccc
Q 045707 145 CNLACEG 151 (901)
Q Consensus 145 v~~a~~~ 151 (901)
|.++..+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998653
No 223
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=8.8e-15 Score=145.22 Aligned_cols=124 Identities=22% Similarity=0.259 Sum_probs=98.0
Q ss_pred CCCCCChhhhcccCCCCCHHHHHHHHhhhcCCCc-----------------------chhHHh--hh-------------
Q 045707 23 SSSSSSQDHLRSLLDPLSKSQLVDLLSRLGSQYP-----------------------SIAEEI--KS------------- 64 (901)
Q Consensus 23 ~s~~~s~~~v~~l~~~~~ee~l~~~~~~~~~~~~-----------------------~~~~~~--~~------------- 64 (901)
.+.....+||++|+..+++++|.+.|+++|.+.. .....+ ..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 3445689999999999999999999999875311 000000 00
Q ss_pred ---ccCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 65 ---VASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 65 ---~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
........++|||+|||.++|+++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.+ +..++|
T Consensus 89 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 89 KGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp CCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred CCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 11122346899999999999999999999999988755 458999999999999999999999975 788999
Q ss_pred ccccccccccc
Q 045707 141 RLAVCNLACEG 151 (901)
Q Consensus 141 ~~i~v~~a~~~ 151 (901)
+.|.|.++.++
T Consensus 164 ~~i~v~~a~~k 174 (175)
T 1fje_B 164 RSVSLYYTGEK 174 (175)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEecCCC
Confidence 99999998653
No 224
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=6e-14 Score=130.79 Aligned_cols=81 Identities=25% Similarity=0.415 Sum_probs=76.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|.++.+..++.+|.++|||||+|.+.++|.+|+ .+|+. ++|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999989999999999999999999999 78866 999999999998
Q ss_pred CCC
Q 045707 241 THK 243 (901)
Q Consensus 241 ~~~ 243 (901)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 225
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.50 E-value=3.7e-14 Score=132.21 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=77.0
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||+|.+|+++.++ +|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 9999999999999999999999965 678999999999
Q ss_pred cccccC
Q 045707 147 LACEGL 152 (901)
Q Consensus 147 ~a~~~~ 152 (901)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987643
No 226
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.4e-14 Score=126.58 Aligned_cols=84 Identities=20% Similarity=0.388 Sum_probs=74.7
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|++.+|+. ++|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445789999999999999999999999999999999654 568999999999999999999999966 999999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99875433
No 227
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=123.34 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=71.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC--C-CcCCcEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--K-TLGGRTIIV 236 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~--~-~i~g~~l~V 236 (901)
..+.++|||+|||+++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.++ + .+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988865 5899999999999999999874 3 399999999
Q ss_pred EeccCCCCCC
Q 045707 237 KLADTHKGKP 246 (901)
Q Consensus 237 ~~a~~~~~~~ 246 (901)
.|+..+..+.
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998765544
No 228
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-15 Score=132.55 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLA 148 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a 148 (901)
....++|||+|||+++|+++|+++|++||.|.+ .++.++.+|+++|||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 345789999999999999999999999999988 7777777899999999999999999999994477899999999998
Q ss_pred cccC
Q 045707 149 CEGL 152 (901)
Q Consensus 149 ~~~~ 152 (901)
....
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 229
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=127.34 Aligned_cols=82 Identities=18% Similarity=0.363 Sum_probs=75.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c--------C
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L--------G 230 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i--------~ 230 (901)
....++|||+|||.++|+++|+++|++||.|..+++..++ +|.++|||||+|.+.++|.+|++.+|+. + .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 8999999999999999999999999965 6 5
Q ss_pred CcEEEEEeccCC
Q 045707 231 GRTIIVKLADTH 242 (901)
Q Consensus 231 g~~l~V~~a~~~ 242 (901)
|++|.|+||.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 230
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=131.86 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=71.9
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLC----AAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
.....++|||+|||+++++++|+ ++|++||+|.+|.+. .+|+++|||||+|.+.++|.+|++.+ |..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 44567899999999999999876 699999999988775 37889999999999999999999876 67899999
Q ss_pred cccccccccC
Q 045707 143 AVCNLACEGL 152 (901)
Q Consensus 143 i~v~~a~~~~ 152 (901)
|.|.++....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999987543
No 231
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1e-14 Score=133.83 Aligned_cols=83 Identities=20% Similarity=0.399 Sum_probs=77.2
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|+ .+|+. ++|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 88866 99999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 86543
No 232
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.49 E-value=5.1e-14 Score=126.98 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=73.4
Q ss_pred cccceEEEcCCCCCC------cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCc-
Q 045707 161 LAQRKLYIGGLSPEV------TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR- 232 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~------tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~- 232 (901)
...++|||+|||.++ |+++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.+|+. ++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 367999999999999999999999999976 9998
Q ss_pred EEEEEeccCC
Q 045707 233 TIIVKLADTH 242 (901)
Q Consensus 233 ~l~V~~a~~~ 242 (901)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 233
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=4.4e-14 Score=132.91 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=74.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCc---eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGE---IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
....++|||+|||+++|+++|+++|++||. |.+|+++.|+. |+++|||||+|.+.++|++|++ +|+. ++|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999999 8865 9999999
Q ss_pred EEeccCC
Q 045707 236 VKLADTH 242 (901)
Q Consensus 236 V~~a~~~ 242 (901)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 234
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1.4e-14 Score=136.75 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++|| |.+|+|++|+. |+++|||||+|.+.++|++|++.++..+.|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 77999999974 9999999999999999999997668889999999988
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 235
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=2.8e-14 Score=120.76 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+. +.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999865 5799999999999999999999976 999999999984
No 236
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=128.94 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACE 150 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~ 150 (901)
.++|||+|||+++|+++|+++|+.| .|.+|+|++|+ +|+++|||||+|.+.++|++|++.++..++||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89999999997 59999999999999999999997778889999999987643
No 237
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1.4e-14 Score=136.77 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=72.0
Q ss_pred eEEEEEecchhhHHHHhcCCcccccccccccccccccCCCcCCCCccccceEEEcCCCCCCcHHHHHhhhccCCceeEee
Q 045707 115 GYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194 (901)
Q Consensus 115 G~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~ 194 (901)
|+||.+|.-++.+..+...+.....|...--... ...........++|||+|||+++|+++|+++|++|| |.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g----~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG----DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC----CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 6788888888887777776544444433211111 011112234568999999999999999999999999 67999
Q ss_pred eeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEeccCCC
Q 045707 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKLADTHK 243 (901)
Q Consensus 195 i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~a~~~~ 243 (901)
++.|++ |+++|||||+|.+.++|++|+ .+|+ .++|+.|.|..+..+.
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 999986 999999999999999999999 6675 5999999999987654
No 238
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=123.01 Aligned_cols=80 Identities=26% Similarity=0.444 Sum_probs=72.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457999999999999999999999999988 45666 57899999999999999999999999976 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98764
No 239
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.8e-14 Score=127.97 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=69.6
Q ss_pred CeEEEeCC----CcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecc----hhh----HHHHhc--C-Cccc
Q 045707 73 RKLFVRGL----AWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKH----MES----TQSALR--A-PSKL 137 (901)
Q Consensus 73 ~~lfV~nL----p~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~----~~~----A~~Al~--~-~~~~ 137 (901)
++|||+|| |+.+++++|+++|++||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999997 444 788887 5 4788
Q ss_pred ccccccccccccc
Q 045707 138 IDGRLAVCNLACE 150 (901)
Q Consensus 138 l~g~~i~v~~a~~ 150 (901)
++|+.|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999987643
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=124.65 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=69.6
Q ss_pred cccceEEEcCCCC-CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC---CcCCcEEEE
Q 045707 161 LAQRKLYIGGLSP-EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK---TLGGRTIIV 236 (901)
Q Consensus 161 ~~~~~lfV~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~---~i~g~~l~V 236 (901)
.+.++|||+|||+ ++|+++|+++|++||.|.++.+++++ |||||+|.+.++|.+|++.+++ .+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999998753 6999999999999999999873 289999999
Q ss_pred EeccCCC
Q 045707 237 KLADTHK 243 (901)
Q Consensus 237 ~~a~~~~ 243 (901)
.+|...+
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 241
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.1e-14 Score=125.36 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC---ccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP---SKLIDGRLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~---~~~l~g~~i~v 145 (901)
.+..++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.+ +..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 356789999999999999999999999999999998764 699999999999999999864 45699999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99976543
No 242
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-14 Score=131.41 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHH---HHHhhcCCeeEEEEEecCCCC---CcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLC---AAFRVHGEIEEGAVIYDKATG---KSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~V~~v~i~~~~~~g---~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
+....++|||+|||+++|+++|+ ++|++||+|.+|.+++++.++ +++|||||+|.+.++|++|++.+ +..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44467899999999999999999 999999999999999987654 56699999999999999999985 778999
Q ss_pred cccccccccccC
Q 045707 141 RLAVCNLACEGL 152 (901)
Q Consensus 141 ~~i~v~~a~~~~ 152 (901)
+.|.|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999997654
No 243
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.7e-14 Score=127.23 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||.|.+|++.. ++.++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445678999999999999999999999999999999954 4568999999999999999999765 678999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9876543
No 244
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.8e-14 Score=128.18 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=72.0
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC---CcCCcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK---TLGGRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~---~i~g~~l~V~ 237 (901)
.+.++|||+|||+++|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.+++ .+.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 35789999999999999999999999999999999875 58999999999999999998873 4999999999
Q ss_pred eccCCCCCC
Q 045707 238 LADTHKGKP 246 (901)
Q Consensus 238 ~a~~~~~~~ 246 (901)
||..+..+.
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 998766554
No 245
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=8.6e-14 Score=132.68 Aligned_cols=81 Identities=40% Similarity=0.625 Sum_probs=75.6
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|++||.|..++++.++.+|+++|||||+|.+.++|++|++.+|+. ++|++|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred ec
Q 045707 238 LA 239 (901)
Q Consensus 238 ~a 239 (901)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 246
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-14 Score=127.59 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCCCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc---ccccccccc
Q 045707 69 DPVHRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRLAV 144 (901)
Q Consensus 69 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~i~ 144 (901)
....++|||+|||+ ++|+++|+++|++||+|.+|.|+++ +|||||+|.+.++|.+|++.++ ..+.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34688999999999 9999999999999999999999865 4899999999999999999763 359999999
Q ss_pred ccccccc
Q 045707 145 CNLACEG 151 (901)
Q Consensus 145 v~~a~~~ 151 (901)
|.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998754
No 247
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=125.57 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc---cccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS---KLIDGRLAVC 145 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~---~~l~g~~i~v 145 (901)
.+..++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.++ ..+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356789999999999999999999999999999998753 6999999999999999999752 3599999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976544
No 248
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=129.19 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccc-------
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLI------- 138 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l------- 138 (901)
..+.+.++|||+|||+++|+++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|++|++.+ +..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567999999999999999999999999999999999998 9999999999999999999999975 5667
Q ss_pred -ccccccccccc
Q 045707 139 -DGRLAVCNLAC 149 (901)
Q Consensus 139 -~g~~i~v~~a~ 149 (901)
.|+++.|.++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 45667776664
No 249
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=5.7e-14 Score=145.19 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHG--EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
..++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.+ +..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 9999999999999999999999999999999999976 6789999999998
Q ss_pred ccc
Q 045707 148 ACE 150 (901)
Q Consensus 148 a~~ 150 (901)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 743
No 250
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=123.26 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC---cCCcEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT---LGGRTIIV 236 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~---i~g~~l~V 236 (901)
..++++|||+|||.++|+++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.+++. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345789999999999999999999999999999998753 579999999999999999999843 88999999
Q ss_pred EeccCCC
Q 045707 237 KLADTHK 243 (901)
Q Consensus 237 ~~a~~~~ 243 (901)
.|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998653
No 251
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=123.65 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=70.5
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC---CcCCcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK---TLGGRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~---~i~g~~l~V~ 237 (901)
.+.++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.+++ .++|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998764 57999999999999999998762 3899999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
|+..+..+
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876544
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-14 Score=131.88 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=75.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCce-eEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEI-EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
....++|||+|||+++|+++|+++|++||.| ..|+++.|+ +|+++|||||+|.+.++|++|++. |+. ++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457899999999999999999999999999 889999998 899999999999999999999999 755 999999999
Q ss_pred eccCCC
Q 045707 238 LADTHK 243 (901)
Q Consensus 238 ~a~~~~ 243 (901)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 253
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=122.63 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=74.9
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|+.|+ .+.++.++.+|+++|||||+|.+.++|++|++.+|+. ++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999885 5677888888999999999999999999999999976 999999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876543
No 254
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=122.95 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=72.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~ 238 (901)
....++|||+|||+++|+++|+++|++||.+ .|+++.|+ +|+++|||||+|.+.++|++|++ +|+ .++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999955 99999998 79999999999999999999996 564 49999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87544
No 255
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=127.74 Aligned_cols=82 Identities=27% Similarity=0.484 Sum_probs=75.0
Q ss_pred CccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 159 PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 159 ~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
.....++|||+|||.++|+++|+++|++||.|..+++..++ +.++|||||+|.+.++|++|++.+|+. ++|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999885 458999999999999999999999976 999999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 256
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5e-14 Score=126.13 Aligned_cols=83 Identities=29% Similarity=0.399 Sum_probs=73.2
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
+.+...++|||+|||.++|+++|+++|++||.| +++.+ .+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999999999987 56666 58999999999999999999999965 67799999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99876543
No 257
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=9.3e-13 Score=141.37 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=73.8
Q ss_pred ccccceEEEcCCCCCCcHHHHH----hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLL----NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l 234 (901)
....++|||+|||.++|+++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.+|+. +.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3457899999999999999977 8999999999999876 5889999999999999999999999976 999999
Q ss_pred EEEeccCCC
Q 045707 235 IVKLADTHK 243 (901)
Q Consensus 235 ~V~~a~~~~ 243 (901)
.|.|+..+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 258
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=3.3e-14 Score=131.11 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCc---eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGE---IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
....++|||+|||+++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|++|++ +|+. ++|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999999 7765 9999999
Q ss_pred EEeccCC
Q 045707 236 VKLADTH 242 (901)
Q Consensus 236 V~~a~~~ 242 (901)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 259
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=121.16 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
..+...++|||+|||.++|+++|+++|++||+|.+|+++ +|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 345678999999999999999999999999999999987 589999999999999999865 67799999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99876544
No 260
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=4.8e-14 Score=120.64 Aligned_cols=72 Identities=18% Similarity=0.345 Sum_probs=66.0
Q ss_pred cceEEEcCCCCCC------cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCc-EE
Q 045707 163 QRKLYIGGLSPEV------TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGR-TI 234 (901)
Q Consensus 163 ~~~lfV~nLp~~~------tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~-~l 234 (901)
+++|||+|||.++ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.+|+. ++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 357999999999999999999999999976 9998 88
Q ss_pred EE
Q 045707 235 IV 236 (901)
Q Consensus 235 ~V 236 (901)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 261
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.47 E-value=6e-14 Score=137.73 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=78.5
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.......++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.+ +..+.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334556789999999999999999999999999999999999999999999999999999999999875 6779999999
Q ss_pred cccccccCC
Q 045707 145 CNLACEGLS 153 (901)
Q Consensus 145 v~~a~~~~~ 153 (901)
|.++.....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999876543
No 262
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.5e-14 Score=130.06 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=75.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||+++|+++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +|+. ++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987778887899999999999999999999999 8865 9999999999
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9754
No 263
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=119.72 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
.....++|||+|||+++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|++|++.++..++|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence 34467899999999999999999999999999987 66666665 99999999999999999447889999999998
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.....
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 865443
No 264
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=3.2e-13 Score=122.44 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=72.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC-----cE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG-----RT 233 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g-----~~ 233 (901)
....++|||+|||+++|+++|+++|++||.|..|.+..+ |||||+|.+.++|++|++.+|+. ++| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 79999999999999999999976 888 99
Q ss_pred EEEEeccCCCCCC
Q 045707 234 IIVKLADTHKGKP 246 (901)
Q Consensus 234 l~V~~a~~~~~~~ 246 (901)
|.|.+|.++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998865443
No 265
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=128.61 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCcHHHHH----hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLL----NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
...++|||+|||+++++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|++.+|+. +.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 7999999999988753 5789999999999999999999999976 9999999
Q ss_pred EEeccCCCC
Q 045707 236 VKLADTHKG 244 (901)
Q Consensus 236 V~~a~~~~~ 244 (901)
|.||..+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987543
No 266
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=4.8e-15 Score=136.49 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=78.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeE--------EEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEE--------GAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLI 138 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l 138 (901)
.+.+.++|||+|||.++|+++|+++|++||.|.+ |+++.++.+|+++|||||+|.+.++|++|++.+ +..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999999 999999889999999999999999999999976 6779
Q ss_pred cccccccccccccCC
Q 045707 139 DGRLAVCNLACEGLS 153 (901)
Q Consensus 139 ~g~~i~v~~a~~~~~ 153 (901)
.|+.|.|.++.....
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876543
No 267
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=123.70 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccCC
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADTH 242 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~~ 242 (901)
++|||+|||.++|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.+++. ++|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 6789999999999999999999854 99999999999876
Q ss_pred CCC
Q 045707 243 KGK 245 (901)
Q Consensus 243 ~~~ 245 (901)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 533
No 268
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-14 Score=128.49 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=74.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++|++ +|+. ++|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5789999999999999999999999999988 777787789999999999999999999999 8865 999999999998
Q ss_pred CCCCC
Q 045707 241 THKGK 245 (901)
Q Consensus 241 ~~~~~ 245 (901)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76544
No 269
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=119.56 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=70.4
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..+.+. +|||||+|.+.++|++|++.+|+. ++|++|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457899999999999999999999999999999987 469999999999999999999975 99999999999
Q ss_pred cCCCCC
Q 045707 240 DTHKGK 245 (901)
Q Consensus 240 ~~~~~~ 245 (901)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 270
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.45 E-value=7.5e-14 Score=125.25 Aligned_cols=82 Identities=22% Similarity=0.495 Sum_probs=74.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-CcCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-TLGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+.+..++ +|.++|||||+|.+.++|++|++ ++ .++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999 54 49999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 987654
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.3e-14 Score=130.63 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||.++|+++|+++|++||.|.++.+..+..+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999854433333338899999999999999999999875 6789999999999
Q ss_pred ccccCC
Q 045707 148 ACEGLS 153 (901)
Q Consensus 148 a~~~~~ 153 (901)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976544
No 272
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-13 Score=124.01 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=69.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.++++. +++|||||+|.+.++|++|++.+ +..++|+.|.|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567999999999999999999999999999999987 36799999999999999999875 67899999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
.++.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98854
No 273
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=5.5e-14 Score=127.28 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=69.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
..+..++|||+|||+++|+++|+++|++|| +|..+.+.. ++++|||||+|.+.++|++|++.+ +..++|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998853 348899999999999999999876 67899999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98854
No 274
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.45 E-value=3.2e-13 Score=121.32 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|..+.+.+ |||||+|.+.++|++|++.+|+. ++|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3578999999999999999999999999999998863 59999999999999999999976 99999999999
Q ss_pred cCCCCCCC
Q 045707 240 DTHKGKPP 247 (901)
Q Consensus 240 ~~~~~~~~ 247 (901)
.++..+..
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 87665443
No 275
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=9.4e-14 Score=121.01 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=63.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNL 147 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~ 147 (901)
......+|||+|||+++|+++|+++|++||+|.+|+|+++ +||||||+|.+.++|+++... ...+.|+.+.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEE
Confidence 4556889999999999999999999999999999999874 789999999999999964332 4446799999998
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+..+
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8654
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.4e-13 Score=123.26 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc-----cc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG-----RL 142 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g-----~~ 142 (901)
....++|||+|||+++|+++|+++|++||+|.+|+|+.+ |||||+|.+.++|++|++.+ +..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999875 89999999999999999976 677999 99
Q ss_pred cccccccccCCC
Q 045707 143 AVCNLACEGLSG 154 (901)
Q Consensus 143 i~v~~a~~~~~~ 154 (901)
|.|.++......
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999998765443
No 277
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=8.1e-15 Score=134.95 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=78.4
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeE--------eeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEE--------GSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG 231 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g 231 (901)
...++|||+|||.++++++|+++|++||.|.. +.+..++.+|+++|||||+|.+.++|.+|++.+|+. ++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 899999889999999999999999999999999976 999
Q ss_pred cEEEEEeccCCCCC
Q 045707 232 RTIIVKLADTHKGK 245 (901)
Q Consensus 232 ~~l~V~~a~~~~~~ 245 (901)
++|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999875433
No 278
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7.7e-14 Score=125.89 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEeCCCcC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC---cccccccc
Q 045707 67 SADPVHRKLFVRGLAWN-TTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP---SKLIDGRL 142 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~---~~~l~g~~ 142 (901)
......++|||+|||++ +|+++|+++|++||+|.+|+|++ +||||||+|.+.++|.+|++.+ +..+.|+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34556899999999998 99999999999999999999974 4699999999999999999975 34599999
Q ss_pred cccccccccC
Q 045707 143 AVCNLACEGL 152 (901)
Q Consensus 143 i~v~~a~~~~ 152 (901)
|.|.++....
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999986543
No 279
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=124.64 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556899999999999999999999999999999999875 699999999999999999775 678999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9976544
No 280
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=123.04 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=71.2
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
....+|||+|||+++|+++|+++|++| .|.+|.++.|+. |+++|||||+|.+.++|++|+ .+|+. ++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346799999999999999999999999 899999999976 999999999999999999999 56755 99999999888
Q ss_pred cC
Q 045707 240 DT 241 (901)
Q Consensus 240 ~~ 241 (901)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 281
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.3e-13 Score=119.77 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC--CcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG--GRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~--g~~l~V~ 237 (901)
...++|||+|||.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.+|+. ++ |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999988754 579999999999999999999965 88 9999999
Q ss_pred eccCCCC
Q 045707 238 LADTHKG 244 (901)
Q Consensus 238 ~a~~~~~ 244 (901)
|+.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 282
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=117.69 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=70.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+.+ +||||+|.+.++|.+|++.+|+. ++|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44578999999999999999999999999999999874 39999999999999999999976 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876543
No 283
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=123.44 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++|+ .|.++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4556789999999999999999999999874 6788889889999999999999999999999964 77899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99976544
No 284
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2.2e-13 Score=120.63 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=71.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.+++. ++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999998765 346899999999999999999999999976 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987543
No 285
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.6e-13 Score=123.25 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=72.2
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.+++. ++|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999876 579999999999999999999976 99999999999
Q ss_pred cCCCCC
Q 045707 240 DTHKGK 245 (901)
Q Consensus 240 ~~~~~~ 245 (901)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 286
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=121.68 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=70.2
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc--ccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID--GRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~--g~~i~ 144 (901)
.....++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.+ +..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456789999999999999999999999999999998753 689999999999999999965 67788 99999
Q ss_pred cccccccC
Q 045707 145 CNLACEGL 152 (901)
Q Consensus 145 v~~a~~~~ 152 (901)
|.++..+.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987643
No 287
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=117.45 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC--cccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP--SKLIDGRLAV 144 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~--~~~l~g~~i~ 144 (901)
..+...++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 44567899999999999999999999999999999999864 699999999999999999975 5679999999
Q ss_pred cccc
Q 045707 145 CNLA 148 (901)
Q Consensus 145 v~~a 148 (901)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 288
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=3.3e-13 Score=122.79 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=78.3
Q ss_pred ccccccccccccccCCCcCCCCccccceEEEcCCCCC-CcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHH
Q 045707 138 IDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPE-VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVE 216 (901)
Q Consensus 138 l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e 216 (901)
..|..+.+..+...... .+....++|||+|||.+ +|+++|+++|++||.|..|.+ ++|||||+|.+.+
T Consensus 5 ~~g~~~~~~~s~~~~~~---~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~ 73 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKN---DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNER 73 (110)
T ss_dssp CCSCCCCCCCCCSCCSC---CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSH
T ss_pred CCCcccccccCCCCCCC---CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHH
Confidence 34666666655433221 22334689999999999 999999999999999999988 4589999999999
Q ss_pred HHHHHHHcCCCC-cCCcEEEEEeccCCCC
Q 045707 217 AAKKAVDDPHKT-LGGRTIIVKLADTHKG 244 (901)
Q Consensus 217 ~A~~Al~~l~~~-i~g~~l~V~~a~~~~~ 244 (901)
+|++|++.+|+. ++|+.|.|.++..++.
T Consensus 74 ~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 74 HARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 999999999976 9999999999985443
No 289
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=124.73 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=73.9
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCc---eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGE---IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~---I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
...++|||+|||+++|+++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|.+|++ +|+. ++|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45789999999999999999999999998 89999999987 9999999999999999999999 7755 99999999
Q ss_pred EeccCC
Q 045707 237 KLADTH 242 (901)
Q Consensus 237 ~~a~~~ 242 (901)
.++.++
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998754
No 290
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.8e-14 Score=127.17 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=69.4
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcceEEEEEecchhhHHHHhcCCcccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT---GKSRGYGFITYKHMESTQSALRAPSKLIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~---g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~ 144 (901)
.....++|||+|||+++|+++|+++|++||+|. +.++.++.+ |+++|||||+|.+.++|++|++.++ .++|+.+.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEE
Confidence 345679999999999999999999999999999 888888777 7999999999999999999999873 37888777
Q ss_pred cccc
Q 045707 145 CNLA 148 (901)
Q Consensus 145 v~~a 148 (901)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6644
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=6.9e-13 Score=127.22 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=70.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC--cEEEEEe
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG--RTIIVKL 238 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g--~~l~V~~ 238 (901)
...+|||+||++++|+++|+++|++||.|.+|.+..+ .++|||||+|.+.++|++|++.||+. |.| ++|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4567999999999999999999999999999998643 25799999999999999999999976 754 9999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
++++...
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9876543
No 292
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=120.96 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
..+..++|||+|||+++|+++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999997 677654 58899999999999999999875 678999999999
Q ss_pred ccccc
Q 045707 147 LACEG 151 (901)
Q Consensus 147 ~a~~~ 151 (901)
++...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 293
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.42 E-value=5.9e-14 Score=124.65 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLC----AAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
..+..++|||+|||.++|+++|+ ++|++||.|.+|.+.+ +|.++|||||+|.+.++|++|++.+ +..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34678999999999999999999 9999999999998873 6788999999999999999999975 77899999
Q ss_pred ccccccccc
Q 045707 143 AVCNLACEG 151 (901)
Q Consensus 143 i~v~~a~~~ 151 (901)
|.|.++...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999998654
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-13 Score=115.47 Aligned_cols=75 Identities=32% Similarity=0.483 Sum_probs=68.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcC-CCC-cCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDP-HKT-LGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l-~~~-i~g~~l~V~ 237 (901)
....++|||+|||.++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.+ ++. ++|++|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 445789999999999999999999999999999999864 579999999999999999998 765 999999999
Q ss_pred ecc
Q 045707 238 LAD 240 (901)
Q Consensus 238 ~a~ 240 (901)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 295
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=118.88 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|++++ |||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4556789999999999999999999999999999999873 49999999999999999975 67899999999
Q ss_pred ccccccC
Q 045707 146 NLACEGL 152 (901)
Q Consensus 146 ~~a~~~~ 152 (901)
.++....
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987653
No 296
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=1.4e-13 Score=140.06 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=60.8
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCe--eEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEI--EEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGR 141 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V--~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~ 141 (901)
.++|||+|||+++|+++|+++|++||.| .+++++.++ |.++|||||+|.+.++|.+|+..+ +..+.|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 5689999999999999999999999999 899998774 566799999999999999999987 5667776
No 297
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-13 Score=122.74 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=70.2
Q ss_pred ceEEEcCC----CCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCC----HHH----HHHHHH--cCCCC-
Q 045707 164 RKLYIGGL----SPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT----VEA----AKKAVD--DPHKT- 228 (901)
Q Consensus 164 ~~lfV~nL----p~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~----~e~----A~~Al~--~l~~~- 228 (901)
++|||+|| |+.+++++|+++|+.||+|.++.++.|++||.++|||||+|.+ .++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889988 77876
Q ss_pred cCCcEEEEEeccC
Q 045707 229 LGGRTIIVKLADT 241 (901)
Q Consensus 229 i~g~~l~V~~a~~ 241 (901)
|+|++|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=117.01 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+|++ +|+. ++|+.|.|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 56666665 99999999999999999 8866 999999999887
Q ss_pred CCCCC
Q 045707 241 THKGK 245 (901)
Q Consensus 241 ~~~~~ 245 (901)
++...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 65443
No 299
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=5.4e-13 Score=118.85 Aligned_cols=79 Identities=27% Similarity=0.468 Sum_probs=71.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.+|+. ++|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345789999999999999999999999999999999864 579999999999999999999965 9999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987543
No 300
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=2e-13 Score=123.58 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCC-ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHG-EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG-~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
..++|||+|||+++|+++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.+|+. ++|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 899998864 247899999999999999999999976 99999999998
Q ss_pred cCC
Q 045707 240 DTH 242 (901)
Q Consensus 240 ~~~ 242 (901)
..+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 301
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.41 E-value=1.5e-13 Score=121.92 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=73.9
Q ss_pred cccceEEEcCCCCCCcHHHHH----hhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLL----NFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~----~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
...++|||+|||.++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|++.+|+. ++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999998874 4788999999999999999999999976 9999999
Q ss_pred EEeccCCCC
Q 045707 236 VKLADTHKG 244 (901)
Q Consensus 236 V~~a~~~~~ 244 (901)
|.|+.++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987653
No 302
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=119.61 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=70.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 357899999999999999999999966 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+.+++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 303
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=2e-13 Score=120.94 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=68.4
Q ss_pred CCCCCCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 68 ADPVHRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
..++.++|||+|||+ ++|+++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999984 689999999999999999975 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876443
No 304
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.4e-13 Score=121.67 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=70.0
Q ss_pred cccceEEEcCCCCC-CcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC--C-CcCCcEEEE
Q 045707 161 LAQRKLYIGGLSPE-VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH--K-TLGGRTIIV 236 (901)
Q Consensus 161 ~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~--~-~i~g~~l~V 236 (901)
...++|||+|||++ +|+++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|++.++ + .+.|++|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 99999999999999999999974 35899999999999999999875 3 399999999
Q ss_pred EeccCCCCC
Q 045707 237 KLADTHKGK 245 (901)
Q Consensus 237 ~~a~~~~~~ 245 (901)
.||..+...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999865543
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=8.7e-14 Score=123.30 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=70.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.+...++|||+|||.++|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988765 247899999999999999999999965 677999999999
Q ss_pred cccccC
Q 045707 147 LACEGL 152 (901)
Q Consensus 147 ~a~~~~ 152 (901)
++....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 986543
No 306
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=2e-13 Score=123.58 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=69.7
Q ss_pred cCCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 66 ASADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
...+...++|||+|||.++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.+ +..++|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999999999987 699999999999999999975 7789999999
Q ss_pred cccccccC
Q 045707 145 CNLACEGL 152 (901)
Q Consensus 145 v~~a~~~~ 152 (901)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99986543
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=2.8e-13 Score=122.62 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=70.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+. +|||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999987 579999999999999999999976 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9876543
No 308
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=3.1e-13 Score=119.86 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=68.1
Q ss_pred cCCCCCCCeEEEeCCCc-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccc
Q 045707 66 ASADPVHRKLFVRGLAW-NTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLA 143 (901)
Q Consensus 66 ~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i 143 (901)
....+..++|||+|||. ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.+ +..++|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999983 699999999999999999965 677999999
Q ss_pred cccccccc
Q 045707 144 VCNLACEG 151 (901)
Q Consensus 144 ~v~~a~~~ 151 (901)
.|.++...
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99988543
No 309
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=3.1e-13 Score=125.06 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCcee--EeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIE--EGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~--~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
...++|||+|||+++|+++|+++|++| .|. +|+++.|+. |+++|||||+|.+.++|++|++..+..++|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 346889999999999999999999999 566 899999987 9999999999999999999999866669999999998
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 310
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=118.65 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=67.7
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLAC 149 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~ 149 (901)
...++|||+|||.++|+++|+++|++||+|.+|+++++ ++|||||+|.+.++|++|... ...+.|+.+.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45799999999999999999999999999999999864 789999999999999877554 455789999999887
Q ss_pred ccCC
Q 045707 150 EGLS 153 (901)
Q Consensus 150 ~~~~ 153 (901)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 311
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.6e-13 Score=116.02 Aligned_cols=78 Identities=26% Similarity=0.418 Sum_probs=70.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++|+++|+++|++||.|..+.+.+ |||||+|.+.++|++|++.+|+. ++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999874 39999999999999999999976 9999999999
Q ss_pred ccCCCCC
Q 045707 239 ADTHKGK 245 (901)
Q Consensus 239 a~~~~~~ 245 (901)
+.++..+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876443
No 312
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3.9e-13 Score=119.79 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||.++|+++|+++|++||+|.+|++.++ +|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999854 699999999999999999775 678999999999
Q ss_pred cccccC
Q 045707 147 LACEGL 152 (901)
Q Consensus 147 ~a~~~~ 152 (901)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 986643
No 313
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.4e-13 Score=122.05 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=69.7
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.+|+. ++|++|.|.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998874 4579999999999999999999976 999999999998
Q ss_pred CCC
Q 045707 241 THK 243 (901)
Q Consensus 241 ~~~ 243 (901)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 644
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=3.2e-13 Score=133.69 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=75.8
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|||+++|+++|+++|++||.|.+|.|..++ +|.++|||||+|.+.++|++|++.+ +..++|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 9999999999999999999999965 6789999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=4.3e-13 Score=134.85 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=74.3
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccccccccccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRLAVCNLACEG 151 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~i~v~~a~~~ 151 (901)
.++|||+|||+++|+++|+++|++||+|.+|+++++. +|+++|||||+|.+.++|++|++.++..++|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 5899999999999999999999999999999999986 699999999999999999999999888999999999987553
No 316
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-13 Score=124.82 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=69.0
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
+.+.++|||+|||+++|+++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999998863 5689999999999999999876 6779999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8653
No 317
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.40 E-value=4.5e-13 Score=120.32 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|||+++|+++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999986 469999999999999999975 778999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9976543
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.6e-13 Score=118.55 Aligned_cols=78 Identities=29% Similarity=0.466 Sum_probs=68.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCc-eeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCC-C-cCCcEEEEE
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGE-IEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHK-T-LGGRTIIVK 237 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~-I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~-~-i~g~~l~V~ 237 (901)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.+|+ . ++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35789999999999999999999999999 6555542 468999999999999999999997 6 999999999
Q ss_pred eccCCCCC
Q 045707 238 LADTHKGK 245 (901)
Q Consensus 238 ~a~~~~~~ 245 (901)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876544
No 319
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.39 E-value=6.8e-13 Score=117.66 Aligned_cols=75 Identities=21% Similarity=0.505 Sum_probs=69.0
Q ss_pred ccccceEEEcCCCC-CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEE
Q 045707 160 DLAQRKLYIGGLSP-EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVK 237 (901)
Q Consensus 160 ~~~~~~lfV~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~ 237 (901)
....++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.+|+. ++|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44678999999998 99999999999999999999883 589999999999999999999976 999999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
++.++
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 320
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.39 E-value=4.1e-13 Score=123.29 Aligned_cols=80 Identities=30% Similarity=0.480 Sum_probs=73.0
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|||.++|+++|+++|++||.|.++.+..+ +.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34789999999999999999999999999999999875 456899999999999999999999976 99999999999
Q ss_pred cCCC
Q 045707 240 DTHK 243 (901)
Q Consensus 240 ~~~~ 243 (901)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8644
No 321
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-12 Score=116.06 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=69.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccC--CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRH--GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~f--G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
....++|||+|||.++|+++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++.+|+. ++|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 999988764 469999999999999999999976 99999999
Q ss_pred EeccCCCC
Q 045707 237 KLADTHKG 244 (901)
Q Consensus 237 ~~a~~~~~ 244 (901)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987543
No 322
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=117.61 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||.++|+++|+++|++||.|.+|.+++ +||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4556789999999999999999999999999999999873 49999999999999999875 67899999999
Q ss_pred ccccccCC
Q 045707 146 NLACEGLS 153 (901)
Q Consensus 146 ~~a~~~~~ 153 (901)
.++.....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976544
No 323
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=3e-13 Score=121.01 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=69.0
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999873 4689999999999999999999976 999999999987
Q ss_pred CC
Q 045707 241 TH 242 (901)
Q Consensus 241 ~~ 242 (901)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 324
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.4e-13 Score=119.69 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-c-ccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGE-IEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-S-KLIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~-~~l~g~~i~ 144 (901)
.....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.+ + ..++|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567799999999999999999999999999 6666552 4699999999999999999876 5 679999999
Q ss_pred cccccccCC
Q 045707 145 CNLACEGLS 153 (901)
Q Consensus 145 v~~a~~~~~ 153 (901)
|.++.....
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999976543
No 325
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.2e-13 Score=118.25 Aligned_cols=76 Identities=21% Similarity=0.477 Sum_probs=68.9
Q ss_pred cccceEEEcCCCC-CCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 161 LAQRKLYIGGLSP-EVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 161 ~~~~~lfV~nLp~-~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
...++|||+|||. ++|+++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.+|+. +.|++|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4578999999998 99999999999999999999884 579999999999999999999966 8999999999
Q ss_pred ccCCCC
Q 045707 239 ADTHKG 244 (901)
Q Consensus 239 a~~~~~ 244 (901)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987544
No 326
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=6.5e-13 Score=137.90 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=96.1
Q ss_pred CCCChhhhcccCC-CCCHHHHHHHHhhhcCCCc-------------------chhHHhh---h-----------cc----
Q 045707 25 SSSSQDHLRSLLD-PLSKSQLVDLLSRLGSQYP-------------------SIAEEIK---S-----------VA---- 66 (901)
Q Consensus 25 ~~~s~~~v~~l~~-~~~ee~l~~~~~~~~~~~~-------------------~~~~~~~---~-----------~~---- 66 (901)
+....+||++|+. .+++++|.+.|+++|.+.. .....+. . ..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 3467999999999 9999999999999997610 0000000 0 00
Q ss_pred ----------------------------------CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCC
Q 045707 67 ----------------------------------SADPVHRKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATG 111 (901)
Q Consensus 67 ----------------------------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g 111 (901)
...+..++|||+|||.++|+++|+++|++|| .|.+|+++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---- 187 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---- 187 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----
Confidence 0012368899999999999999999999999 9999998653
Q ss_pred CcceEEEEEecchhhHHHHhcCC-ccccc-ccccccccccc
Q 045707 112 KSRGYGFITYKHMESTQSALRAP-SKLID-GRLAVCNLACE 150 (901)
Q Consensus 112 ~~kG~aFV~F~~~~~A~~Al~~~-~~~l~-g~~i~v~~a~~ 150 (901)
++|||||+|.+.++|.+|++.+ +..+. |+.|.|.++.+
T Consensus 188 -~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 188 -DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp -STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred -CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4689999999999999999965 67788 99999999854
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=8.2e-13 Score=115.00 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=63.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEec
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLA 239 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a 239 (901)
....++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|+++.. ....+.|+.|.|.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 445789999999999999999999999999999999874 67999999999999985322 122267999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=130.28 Aligned_cols=87 Identities=22% Similarity=0.402 Sum_probs=73.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEee--eecc---CCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcE
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS--VAYD---KDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRT 233 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~--i~~d---~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~ 233 (901)
....++|||+|||+++|+++|+++|++||.|..+. ++.+ ..+|+++|||||+|.+.++|.+|++.+|+. ++|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34578999999999999999999999999998752 1222 246899999999999999999999999976 99999
Q ss_pred EEEEeccCCCCCC
Q 045707 234 IIVKLADTHKGKP 246 (901)
Q Consensus 234 l~V~~a~~~~~~~ 246 (901)
|.|.+|.+...+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999998765443
No 329
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.5e-12 Score=114.02 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=69.3
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|+ ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|.+|++.+|+. ++|++|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999996 89999999999999999999884 45689999999999999999999976 99999999999
Q ss_pred cCCCCCC
Q 045707 240 DTHKGKP 246 (901)
Q Consensus 240 ~~~~~~~ 246 (901)
.++....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765443
No 330
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5e-13 Score=123.39 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCce----eEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEI----EEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVK 237 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I----~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~ 237 (901)
...+|||+|||+++|+++|+++|++||.| ..|.++.+. +|+++|||||+|.+.++|++|++..+..++|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 46899999999999999999999999975 689999884 7999999999999999999999983345999999999
Q ss_pred eccCC
Q 045707 238 LADTH 242 (901)
Q Consensus 238 ~a~~~ 242 (901)
.+..+
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88643
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.37 E-value=7.3e-13 Score=120.51 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=67.2
Q ss_pred CCCCeEEEeCCCcC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 70 PVHRKLFVRGLAWN-TTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
...++|||+|||++ +|+++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.+ +..++|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 4699999999999999999775 6789999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 332
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.5e-13 Score=116.52 Aligned_cols=79 Identities=28% Similarity=0.310 Sum_probs=70.9
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEe-eeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEG-SVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v-~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
...++|||+|||+++|+++|+++|++||.|..+ .++.++.+| .|||+|.+.++|.+|++.+|+. ++|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 488876553 4999999999999999999976 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 333
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.36 E-value=6.1e-13 Score=128.37 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 67 SADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
......++|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.+ +..+.|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999876 6799999999999999999965 77899999999
Q ss_pred cccccc
Q 045707 146 NLACEG 151 (901)
Q Consensus 146 ~~a~~~ 151 (901)
.++...
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998653
No 334
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.7e-12 Score=115.69 Aligned_cols=78 Identities=27% Similarity=0.378 Sum_probs=68.8
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVH--GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAV 144 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~ 144 (901)
.....++|||+|||+++|+++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 899988764 579999999999999999965 6789999999
Q ss_pred cccccccCC
Q 045707 145 CNLACEGLS 153 (901)
Q Consensus 145 v~~a~~~~~ 153 (901)
|.++.....
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 335
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=2.1e-12 Score=129.77 Aligned_cols=117 Identities=18% Similarity=0.285 Sum_probs=90.0
Q ss_pred chhhHHHHhcCC--c-ccccccccccccccccCCCcCCC-----CccccceEEEcCCCCCCcHHHHHhhhccCCceeEee
Q 045707 123 HMESTQSALRAP--S-KLIDGRLAVCNLACEGLSGVSAV-----PDLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGS 194 (901)
Q Consensus 123 ~~~~A~~Al~~~--~-~~l~g~~i~v~~a~~~~~~~~~~-----~~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~ 194 (901)
+.+.+..|++.. . ..+.+....+....... .+.. .....++|||+|||.++|+++|+++|++||.|..|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p--~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 140 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP--LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ 140 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC--CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC--CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEE
Confidence 456667777665 2 22444444444331111 0110 123468999999999999999999999999999999
Q ss_pred eeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccCC
Q 045707 195 VAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTH 242 (901)
Q Consensus 195 i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~~ 242 (901)
+.++.. |.++|||||+|.+.++|.+|++.+++.++|++|.|.++..-
T Consensus 141 i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 141 MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp EEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred EEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 999864 89999999999999999999999888899999999998753
No 336
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.1e-12 Score=118.41 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=68.6
Q ss_pred cccceEEE--cCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c-----CCc
Q 045707 161 LAQRKLYI--GGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L-----GGR 232 (901)
Q Consensus 161 ~~~~~lfV--~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i-----~g~ 232 (901)
.+.++||| +||+.++|+++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.||+. + .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34688999 779999999999999999999999988642 689999999999999999999976 6 689
Q ss_pred EEEEEeccCCCC
Q 045707 233 TIIVKLADTHKG 244 (901)
Q Consensus 233 ~l~V~~a~~~~~ 244 (901)
+|.|.|+.....
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999985443
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=1.4e-13 Score=131.68 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEE--E---EecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGA--V---IYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~--i---~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
....++|||+|||+++|+++|+++|++||.|.+|. + ++...+|+++|||||+|.+.++|.+|++.+ +..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999988741 1 111237899999999999999999999965 67899999
Q ss_pred cccccccccC
Q 045707 143 AVCNLACEGL 152 (901)
Q Consensus 143 i~v~~a~~~~ 152 (901)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999986543
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.36 E-value=1.1e-12 Score=129.95 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=77.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEe
Q 045707 160 DLAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKL 238 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~ 238 (901)
....++|||+|||.++++++|+++|++||.|..|.+..++ +|.++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 8999999999999999999999999976 9999999999
Q ss_pred ccCCC
Q 045707 239 ADTHK 243 (901)
Q Consensus 239 a~~~~ 243 (901)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 339
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=7.8e-13 Score=133.99 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc-cccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHG-EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID-GRLAVCNL 147 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~-g~~i~v~~ 147 (901)
..++|||+|||.++|+++|+++|++|| .|.+|+++.+ .+|||||+|.+.++|.+|++.+ |..++ |+.|.|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 378899999999999999999999999 9999998764 3699999999999999999965 67788 99999998
Q ss_pred ccc
Q 045707 148 ACE 150 (901)
Q Consensus 148 a~~ 150 (901)
+.+
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 754
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=120.32 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=70.5
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCC---CCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEe
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDT---NESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKL 238 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~ 238 (901)
..++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.+++ ++|+.+.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~-~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE-EDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE-ETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh-cCCcEEEecc
Confidence 468999999999999999999999999999 888888777 79999999999999999999999854 7888888876
Q ss_pred ccCC
Q 045707 239 ADTH 242 (901)
Q Consensus 239 a~~~ 242 (901)
+...
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 5543
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-12 Score=110.93 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=63.5
Q ss_pred CCCCe-EEEeCCCcCCCHHH----HHHHHhhc-CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 70 PVHRK-LFVRGLAWNTTSET----LCAAFRVH-GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 70 ~~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
++..| |||+|||+++++++ |+++|++| |+|.+| +| |+|||+|.+.++|++|++.+ |..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 33444 99999999999988 55899999 599987 44 99999999999999999876 77899999
Q ss_pred cccccccccCC
Q 045707 143 AVCNLACEGLS 153 (901)
Q Consensus 143 i~v~~a~~~~~ 153 (901)
|+|.++.....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999976543
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=3.4e-12 Score=117.87 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=72.2
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeE-EEEEeCCHHHHHHHHHcCCCC-cCC--cEEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGF-GFVTYKTVEAAKKAVDDPHKT-LGG--RTIIVK 237 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Al~~l~~~-i~g--~~l~V~ 237 (901)
..-.|||+||++.+|+++|+++|++||.|.+|.+..+ .+|+ |||+|.+.++|.+|++.||+. +.| ++|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3467899999999999999999999999999988764 2577 999999999999999999987 777 999999
Q ss_pred eccCCCCCCCCCC
Q 045707 238 LADTHKGKPPQTQ 250 (901)
Q Consensus 238 ~a~~~~~~~~~~~ 250 (901)
|++.+.-......
T Consensus 102 ~ak~~~l~v~~n~ 114 (130)
T 3zzy_A 102 FSKLTSLNVKYNN 114 (130)
T ss_dssp ECSCSSCCCCCCS
T ss_pred ecCCCceeEEecC
Confidence 9987765544433
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.2e-13 Score=118.85 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCCCCCeEEE--eCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccc-----
Q 045707 67 SADPVHRKLFV--RGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLI----- 138 (901)
Q Consensus 67 ~~~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l----- 138 (901)
..+...++||| |||++++|+++|+++|++||+|.+|.++. .||||||+|.+.++|++|++.+ |..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 77999999999999999999999988753 3699999999999999999987 5656
Q ss_pred cccccccccccc
Q 045707 139 DGRLAVCNLACE 150 (901)
Q Consensus 139 ~g~~i~v~~a~~ 150 (901)
.|+++.|.++..
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 578888887754
No 344
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.1e-12 Score=114.48 Aligned_cols=78 Identities=26% Similarity=0.315 Sum_probs=68.5
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
.....++|||+|+ ++|+++|+++|++||+|.+|.+. +++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446789999996 99999999999999999999984 47799999999999999999876 677999999999
Q ss_pred cccccCC
Q 045707 147 LACEGLS 153 (901)
Q Consensus 147 ~a~~~~~ 153 (901)
++.....
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9876543
No 345
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9e-13 Score=116.69 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEG-AVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
...++|||+|||+++|+++|+++|++||.|.+| .++.++.+ |.|||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 48877644 44999999999999999865 7789999999999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8765
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.34 E-value=5.2e-13 Score=116.17 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=67.3
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||+++|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.+ +..+.|+.+.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999884 57899999999999999999965 67799999999998
Q ss_pred cc
Q 045707 149 CE 150 (901)
Q Consensus 149 ~~ 150 (901)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=109.28 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred cceEEEcCCCCCCcHHH----HHhhhccC-CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 163 QRKLYIGGLSPEVTTEV----LLNFFGRH-GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~----L~~~F~~f-G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
.+.|||+|||.++++++ |+++|++| |.|.+| +| |+|||+|.+.++|.+|++.|++. +.||+|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999988 55899999 599987 34 89999999999999999999977 99999999
Q ss_pred EeccCCCCCC
Q 045707 237 KLADTHKGKP 246 (901)
Q Consensus 237 ~~a~~~~~~~ 246 (901)
.||+.+...-
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9999876543
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=1.4e-12 Score=113.14 Aligned_cols=72 Identities=17% Similarity=0.378 Sum_probs=64.4
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVH----G-------EIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLI 138 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l 138 (901)
...++|||+|||+++|+++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+..++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 457899999999999999999999999 8 8999988754 6999999999999999994457889
Q ss_pred ccccccccc
Q 045707 139 DGRLAVCNL 147 (901)
Q Consensus 139 ~g~~i~v~~ 147 (901)
.|+.+.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999998864
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.33 E-value=1.6e-12 Score=113.06 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=68.0
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEecc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLAD 240 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~ 240 (901)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.+|+. ++|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46889999999999999999999999 99999884 57899999999999999999999976 999999999986
Q ss_pred CC
Q 045707 241 TH 242 (901)
Q Consensus 241 ~~ 242 (901)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.5e-12 Score=113.13 Aligned_cols=78 Identities=18% Similarity=0.382 Sum_probs=66.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccC
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADT 241 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~ 241 (901)
..++|||+|||.++|+++|+++|++||.|.++++..+ ++|||||+|.+.++|++|... ...+.|++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999865 678999999999999865333 2237999999999987
Q ss_pred CCCC
Q 045707 242 HKGK 245 (901)
Q Consensus 242 ~~~~ 245 (901)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=2.8e-12 Score=122.95 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccc--ccccccc
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDG--RLAVCNL 147 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g--~~i~v~~ 147 (901)
...+|||+||++++|+++|+++|++||+|.+|.|..+ .++|||||+|.+.++|++|++.+ |..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457999999999999999999999999999998643 26799999999999999999987 677865 9999999
Q ss_pred ccccC
Q 045707 148 ACEGL 152 (901)
Q Consensus 148 a~~~~ 152 (901)
+....
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 87653
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=3.2e-12 Score=117.20 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=64.6
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcE-----E
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRT-----I 234 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~-----l 234 (901)
...++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.||+. ++|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999875 79999999999999999999976 99988 6
Q ss_pred EEEeccCC
Q 045707 235 IVKLADTH 242 (901)
Q Consensus 235 ~V~~a~~~ 242 (901)
.|..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665543
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=1.2e-11 Score=113.89 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeE-EEEEeCCHHHHHHHHHcCCCC-cCC--cEEEEEec
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGF-GFVTYKTVEAAKKAVDDPHKT-LGG--RTIIVKLA 239 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Al~~l~~~-i~g--~~l~V~~a 239 (901)
-.|||+||++.+|+++|+++|++||.|.+|.+.. + .|| |||+|.+.++|..|++.||+. |.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999999999864 2 276 999999999999999999976 776 69999999
Q ss_pred cCCCCCC
Q 045707 240 DTHKGKP 246 (901)
Q Consensus 240 ~~~~~~~ 246 (901)
+++....
T Consensus 100 k~~~l~v 106 (124)
T 2e5i_A 100 RPTRLNV 106 (124)
T ss_dssp SCSCCCC
T ss_pred cCCccee
Confidence 8765433
No 354
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.30 E-value=2.7e-12 Score=145.30 Aligned_cols=82 Identities=34% Similarity=0.589 Sum_probs=76.3
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLA 148 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a 148 (901)
...++|||+|||+++|+++|.++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+||+.+ +..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999989999999999999999999999876 67899999999998
Q ss_pred ccc
Q 045707 149 CEG 151 (901)
Q Consensus 149 ~~~ 151 (901)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 643
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.30 E-value=1.8e-12 Score=118.83 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCN 146 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~ 146 (901)
...++|||+|||+++|+++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.+ +..++|+.+.+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 35689999999999999999999999999999999765 89999999999999999965 678999984443
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=6.6e-12 Score=112.57 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred ccceEEEcCCCC-----CCcHHHHHhhhccCCceeEeeeeccCCC-CCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEE
Q 045707 162 AQRKLYIGGLSP-----EVTTEVLLNFFGRHGEIEEGSVAYDKDT-NESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234 (901)
Q Consensus 162 ~~~~lfV~nLp~-----~~tee~L~~~F~~fG~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l 234 (901)
.+++|+|+|+.. +.++++|++.|++||.|.++.++.++.+ ++++|||||+|.+.++|.+|++.||+. ++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 478999999963 2378999999999999999999998754 689999999999999999999999976 999999
Q ss_pred EEEeccC
Q 045707 235 IVKLADT 241 (901)
Q Consensus 235 ~V~~a~~ 241 (901)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.28 E-value=5.1e-12 Score=113.33 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCc-----CCCHHHHHHHHhhcCCeeEEEEEecCCC-CCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 70 PVHRKLFVRGLAW-----NTTSETLCAAFRVHGEIEEGAVIYDKAT-GKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 70 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~V~~v~i~~~~~~-g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
...++|+|+|+.. +-++++|++.|++||+|.+|.|++++.+ ++++|||||+|.+.++|.+|++.+ |..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 3478999999999999999999998754 689999999999999999999886 67899999
Q ss_pred cccccccc
Q 045707 143 AVCNLACE 150 (901)
Q Consensus 143 i~v~~a~~ 150 (901)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998854
No 358
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.28 E-value=5.8e-12 Score=116.33 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecchhhHHHHhcCC-cccccc--ccccccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY-GFITYKHMESTQSALRAP-SKLIDG--RLAVCNL 147 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~-aFV~F~~~~~A~~Al~~~-~~~l~g--~~i~v~~ 147 (901)
--+|||+||++.+|+++|+++|++||+|.+|++..+ ++|| |||+|.+.++|++|++.+ |..+.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 356899999999999999999999999999998764 3577 999999999999999987 677887 8899999
Q ss_pred cccc
Q 045707 148 ACEG 151 (901)
Q Consensus 148 a~~~ 151 (901)
+...
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8654
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.24 E-value=7.7e-12 Score=115.53 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccccc
Q 045707 69 DPVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNL 147 (901)
Q Consensus 69 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~ 147 (901)
....++|||+|+ ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356889999996 79999999999999999999985 47799999999999999999775 7789999999999
Q ss_pred ccccC
Q 045707 148 ACEGL 152 (901)
Q Consensus 148 a~~~~ 152 (901)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87653
No 360
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.24 E-value=1.2e-11 Score=107.15 Aligned_cols=71 Identities=21% Similarity=0.545 Sum_probs=64.7
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccC----C-------ceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRH----G-------EIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~f----G-------~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
...++|||+|||.++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .+|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 589999999999999999 88876
Q ss_pred cCCcEEEEEe
Q 045707 229 LGGRTIIVKL 238 (901)
Q Consensus 229 i~g~~l~V~~ 238 (901)
++|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 361
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=1.1e-11 Score=114.61 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=68.0
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a 239 (901)
...++|||+|+ ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.+|+. ++|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999995 79999999999999999999885 45689999999999999999999976 99999999999
Q ss_pred cCCCC
Q 045707 240 DTHKG 244 (901)
Q Consensus 240 ~~~~~ 244 (901)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 362
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=1.7e-11 Score=112.76 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=63.6
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceE-EEEEecchhhHHHHhcCC-cccccc--ccccccccc
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGY-GFITYKHMESTQSALRAP-SKLIDG--RLAVCNLAC 149 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~-aFV~F~~~~~A~~Al~~~-~~~l~g--~~i~v~~a~ 149 (901)
.|||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|..|++.+ |..|.| +.|.|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998652 286 999999999999999986 677877 689999886
Q ss_pred ccC
Q 045707 150 EGL 152 (901)
Q Consensus 150 ~~~ 152 (901)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.6e-11 Score=125.89 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=78.8
Q ss_pred HHhcCCcccccccccccccccccCCCcCCCCccccceEEEcCCCCCC---------cHHHHHhhhccCCceeEeeeeccC
Q 045707 129 SALRAPSKLIDGRLAVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEV---------TTEVLLNFFGRHGEIEEGSVAYDK 199 (901)
Q Consensus 129 ~Al~~~~~~l~g~~i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~---------tee~L~~~F~~fG~I~~v~i~~d~ 199 (901)
.++........|+........... .........++|||+||+.++ ++++|+++|++||.|.+|+++.
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~--g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-- 177 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMG--GIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-- 177 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC-----------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--
T ss_pred hcccccCcccccchhcccchhccc--CcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--
Confidence 344334444557765544432211 112234568899999999998 7999999999999999999985
Q ss_pred CCCCceeEEEEEeCCHHHHHHHHHcCCCC-c------------CCcEEEEEeccCCC
Q 045707 200 DTNESRGFGFVTYKTVEAAKKAVDDPHKT-L------------GGRTIIVKLADTHK 243 (901)
Q Consensus 200 ~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i------------~g~~l~V~~a~~~~ 243 (901)
++|||||+|.+.++|+.|++.|++. + .|+.|.|+||....
T Consensus 178 ----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 178 ----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp ----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred ----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 3689999999999999999999965 7 89999999998654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=9.9e-12 Score=127.51 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=69.2
Q ss_pred ccCCCCCCCeEEEeCCCcCC---------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-
Q 045707 65 VASADPVHRKLFVRGLAWNT---------TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP- 134 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~- 134 (901)
....+...++||||||+.++ |+++|+++|++||+|.+|+|+. ++|||||+|.+.++|+.|++.+
T Consensus 127 ~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 127 IGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp ----CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT
T ss_pred cCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 34456778999999999998 7999999999999999999985 4699999999999999999887
Q ss_pred cccc------------cccccccccccccC
Q 045707 135 SKLI------------DGRLAVCNLACEGL 152 (901)
Q Consensus 135 ~~~l------------~g~~i~v~~a~~~~ 152 (901)
++.+ .|+.|.|.|+....
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCC
Confidence 6677 89999999997654
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.1e-10 Score=104.43 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=67.9
Q ss_pred ccccceEEEcCCCCCC-----------cHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 160 DLAQRKLYIGGLSPEV-----------TTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~~-----------tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...+++|+|.|+.... ++++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|++.+|+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3457899999994433 26899999999999999966 443 37899999999999999999999976
Q ss_pred -cCCcEEEEEeccCCC
Q 045707 229 -LGGRTIIVKLADTHK 243 (901)
Q Consensus 229 -i~g~~l~V~~a~~~~ 243 (901)
++|++|.|.++.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 999999999998654
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.12 E-value=1.2e-11 Score=110.79 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=62.4
Q ss_pred EEeCCCcCCCHHHHHHHH------------hhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-cccccccc
Q 045707 76 FVRGLAWNTTSETLCAAF------------RVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRL 142 (901)
Q Consensus 76 fV~nLp~~~te~~L~~~F------------~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~ 142 (901)
.+.|||.++|+++|++.| ++||+|.+|+|+++. +|+++|||||+|.+.++|++|++.+ |..++||.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888888777666 999999999999886 5899999999999999999999876 67899999
Q ss_pred cccccc
Q 045707 143 AVCNLA 148 (901)
Q Consensus 143 i~v~~a 148 (901)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999875
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=8.9e-11 Score=105.27 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred ccceEEEcCC--CCCC--------cHHHHHhhhccCCceeEeeeeccCCC--CCceeEEEEEeCCHHHHHHHHHcCCCC-
Q 045707 162 AQRKLYIGGL--SPEV--------TTEVLLNFFGRHGEIEEGSVAYDKDT--NESRGFGFVTYKTVEAAKKAVDDPHKT- 228 (901)
Q Consensus 162 ~~~~lfV~nL--p~~~--------tee~L~~~F~~fG~I~~v~i~~d~~t--g~~kG~aFV~F~~~e~A~~Al~~l~~~- 228 (901)
+++.|.+.|+ +.++ .+++|++.|++||.|.++.|+++..+ +.++|+|||+|.+.++|.+|++.||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4788999998 3343 33789999999999999999998764 468999999999999999999999976
Q ss_pred cCCcEEEEEeccC
Q 045707 229 LGGRTIIVKLADT 241 (901)
Q Consensus 229 i~g~~l~V~~a~~ 241 (901)
++||.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999864
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-10 Score=99.75 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCC-------cCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccc
Q 045707 70 PVHRKLFVRGLA-------WNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRL 142 (901)
Q Consensus 70 ~~~~~lfV~nLp-------~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~ 142 (901)
....+|-|.-.. .++|+++|+++|++||+|.+|.|+ ++++|||||+|.+.++|++|++.. ..+.|+.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCe
Confidence 345567666554 468999999999999999999987 368999999999999999999984 3468999
Q ss_pred cccccccccCC
Q 045707 143 AVCNLACEGLS 153 (901)
Q Consensus 143 i~v~~a~~~~~ 153 (901)
|.|.|+.....
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.9e-10 Score=104.81 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEeCCCcCCC-----------HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-
Q 045707 67 SADPVHRKLFVRGLAWNTT-----------SETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP- 134 (901)
Q Consensus 67 ~~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~- 134 (901)
.+....++|+|+||....+ +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|++|++.+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556789999999944332 6899999999999999966 543 38999999999999999999876
Q ss_pred cccccccccccccccccC
Q 045707 135 SKLIDGRLAVCNLACEGL 152 (901)
Q Consensus 135 ~~~l~g~~i~v~~a~~~~ 152 (901)
+..++|+.|.|.++....
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 677999999999986543
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=3.1e-11 Score=108.06 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=63.0
Q ss_pred EcCCCCCCcHHHHHhhh------------ccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEE
Q 045707 168 IGGLSPEVTTEVLLNFF------------GRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTI 234 (901)
Q Consensus 168 V~nLp~~~tee~L~~~F------------~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l 234 (901)
+.||+.++++++|++.| ++||.|.+|.+.++.. |+++|||||+|.+.++|.+|++.+|+. ++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 9999999999998865 789999999999999999999999976 999999
Q ss_pred EEEecc
Q 045707 235 IVKLAD 240 (901)
Q Consensus 235 ~V~~a~ 240 (901)
.|.|+.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999863
No 371
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.09 E-value=1.4e-09 Score=97.68 Aligned_cols=181 Identities=14% Similarity=0.192 Sum_probs=147.0
Q ss_pred chHHHHHHcCCchhHHhHHHHhCchHHHHhhhccccCCCCchhhHHHHHHHHhhhccCcccCh-HHHHHHHHHHhcccH-
Q 045707 696 KTNTILAYLNVGKKRLCEYIQENPLELKKLALGSRVGRLPAEKERSQLLRTKFLLDVGYVENS-NEMAKALKHFRGRGA- 773 (901)
Q Consensus 696 ~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~~lG~~~~~-~~~~~a~~~~~~~~~- 773 (901)
..+.-+--||+..+-+|-++++.|++|.. ....+..+..+|.++|.+++. .....+-+.+..+..
T Consensus 35 diisefillglnpepvcvvlkkspqllkl-------------pimqmrkrssylqklglgegklkrvlyccpeiftmrqq 101 (239)
T 4fzv_B 35 DIISEFILLGLNPEPVCVVLKKSPQLLKL-------------PIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ 101 (239)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHSCGGGGTS-------------CHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH
T ss_pred HHHHHHHhhcCCCCceEEEecCCHHHhcC-------------hHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh
Confidence 44555667899999999999999999876 555777788889999999987 444455444555554
Q ss_pred HHHHHHHHHH-HcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCcccccccchhHHHHHHHHHH
Q 045707 774 ELQERFDCLV-NAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWL 852 (901)
Q Consensus 774 ~l~~r~~~L~-~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~~~~~~L 852 (901)
++...+..|+ ++=|+-.+|.+++-.+|.+|.-....|+-|+.|-.-.||+..-+|++. .||.||+.+||.||-++..|
T Consensus 102 dindtvrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqysltkikqrhiylerl 180 (239)
T 4fzv_B 102 DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLTKIKQRHIYLERL 180 (239)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHHHHHHHHhHHHHh
Confidence 5999999999 999999999999999999999999999999999999999999999986 79999999999999997777
Q ss_pred HHcCCC-------CCCCCcchhhcccHHHHHHHhcccCCChHHHH
Q 045707 853 KDEGWI-------DGRLASSTLIAYSNKTFMQQFVNRHPKGPEVW 890 (901)
Q Consensus 853 ~~~g~~-------~~~~sl~~~l~~sd~~F~~~~v~~~~~~~~~~ 890 (901)
-.-.-- -++.-+.++|..|+..|++|-..-.-+..+++
T Consensus 181 gryqtpdkkgqtqipnpllkdilrvseaeflartactsveefqvf 225 (239)
T 4fzv_B 181 GRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVF 225 (239)
T ss_dssp TCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHH
T ss_pred cccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHH
Confidence 332221 13456788999999999998765544444444
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.8e-10 Score=97.75 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=58.7
Q ss_pred CCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEEEeccCCCC
Q 045707 173 PEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIVKLADTHKG 244 (901)
Q Consensus 173 ~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V~~a~~~~~ 244 (901)
.++++++|+++|++||.|.+|.++ ++++|||||+|.+.++|.+|++.+++ +.|++|.|.|+..+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEEEEccCCCC
Confidence 578999999999999999999987 46789999999999999999999655 6799999999886643
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.07 E-value=2.1e-10 Score=104.86 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=69.9
Q ss_pred ccceEEEcCCC--CCC---cHHHHHhhhccCCceeEeeeeccCC----CCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC
Q 045707 162 AQRKLYIGGLS--PEV---TTEVLLNFFGRHGEIEEGSVAYDKD----TNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG 231 (901)
Q Consensus 162 ~~~~lfV~nLp--~~~---tee~L~~~F~~fG~I~~v~i~~d~~----tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g 231 (901)
++++|++.|+- .++ .+++|++.|++||.|.+|.|+.++. +++++|+|||+|.+.++|.+|++.||+. ++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 47899999983 222 4689999999999999999999864 4678899999999999999999999976 999
Q ss_pred cEEEEEeccC
Q 045707 232 RTIIVKLADT 241 (901)
Q Consensus 232 ~~l~V~~a~~ 241 (901)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 374
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=1.3e-10 Score=106.24 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCeEEEeCCC--cCC---CHHHHHHHHhhcCCeeEEEEEecCC----CCCcceEEEEEecchhhHHHHhcCC-cccccc
Q 045707 71 VHRKLFVRGLA--WNT---TSETLCAAFRVHGEIEEGAVIYDKA----TGKSRGYGFITYKHMESTQSALRAP-SKLIDG 140 (901)
Q Consensus 71 ~~~~lfV~nLp--~~~---te~~L~~~F~~~G~V~~v~i~~~~~----~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g 140 (901)
..++|+++|+- .++ .++||++.|++||+|.+|.|++++. +++++|+|||+|.+.++|.+|++.+ |..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999994 222 3789999999999999999999864 4578899999999999999999987 678999
Q ss_pred cccccccccc
Q 045707 141 RLAVCNLACE 150 (901)
Q Consensus 141 ~~i~v~~a~~ 150 (901)
|.|.+.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999988743
No 375
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.04 E-value=1.4e-10 Score=103.98 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=69.0
Q ss_pred CCCCeEEEeCC--CcCCC--------HHHHHHHHhhcCCeeEEEEEecCCC--CCcceEEEEEecchhhHHHHhcCC-cc
Q 045707 70 PVHRKLFVRGL--AWNTT--------SETLCAAFRVHGEIEEGAVIYDKAT--GKSRGYGFITYKHMESTQSALRAP-SK 136 (901)
Q Consensus 70 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~~~~~--g~~kG~aFV~F~~~~~A~~Al~~~-~~ 136 (901)
.+.+.|.+.|+ |.++. +++|++.|++||+|.+|+|++++.+ ++++|+|||+|.+.++|.+|++.+ |.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 44443 4799999999999999999998754 468999999999999999999887 67
Q ss_pred cccccccccccccc
Q 045707 137 LIDGRLAVCNLACE 150 (901)
Q Consensus 137 ~l~g~~i~v~~a~~ 150 (901)
.++||.|.+.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999999988743
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.92 E-value=1e-09 Score=118.73 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCCCCCeEEEeC--CCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc-ccc---cc
Q 045707 67 SADPVHRKLFVRG--LAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS-KLI---DG 140 (901)
Q Consensus 67 ~~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~-~~l---~g 140 (901)
..+...++||||| |+.++||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.++ ..+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999999 588999999999999999999887642 57999999999999999999974 444 34
Q ss_pred c--ccccccc
Q 045707 141 R--LAVCNLA 148 (901)
Q Consensus 141 ~--~i~v~~a 148 (901)
+ .+.+.++
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 5 4666665
No 377
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.86 E-value=3.3e-09 Score=114.73 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=64.2
Q ss_pred ccccceEEEcC--CCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c---CCc-
Q 045707 160 DLAQRKLYIGG--LSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L---GGR- 232 (901)
Q Consensus 160 ~~~~~~lfV~n--Lp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i---~g~- 232 (901)
..++++|||+| |+.++|+++|+++|++||+|.++.+.. +||||||+|.+.++|++|++.||+. + .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34578999999 578999999999999999999987753 4689999999999999999999976 3 355
Q ss_pred -EEEEEecc
Q 045707 233 -TIIVKLAD 240 (901)
Q Consensus 233 -~l~V~~a~ 240 (901)
.+.+.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888875
No 378
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.81 E-value=7e-09 Score=94.00 Aligned_cols=76 Identities=17% Similarity=0.241 Sum_probs=64.1
Q ss_pred ccceEEEcCCCC--C--------CcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cC
Q 045707 162 AQRKLYIGGLSP--E--------VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LG 230 (901)
Q Consensus 162 ~~~~lfV~nLp~--~--------~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~ 230 (901)
++++|.+.|+=. + -.+++|++.|++||.|.++.+.++. .+|+|||+|.+.++|.+|++.|||. ++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 467888888822 2 1346899999999999999987653 4899999999999999999999976 99
Q ss_pred CcEEEEEeccC
Q 045707 231 GRTIIVKLADT 241 (901)
Q Consensus 231 g~~l~V~~a~~ 241 (901)
||.|.|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 379
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.69 E-value=1.4e-08 Score=92.04 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCcCC----------CHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccc
Q 045707 71 VHRKLFVRGLAWNT----------TSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLID 139 (901)
Q Consensus 71 ~~~~lfV~nLp~~~----------te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~ 139 (901)
..+.|.+.|+=..- .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.+ |..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46788899884322 246889999999999999987652 5899999999999999999986 67899
Q ss_pred cccccccccc
Q 045707 140 GRLAVCNLAC 149 (901)
Q Consensus 140 g~~i~v~~a~ 149 (901)
||.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999874
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=7.6e-08 Score=87.21 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=66.1
Q ss_pred ccccceEEEcCCCCC-CcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCC-HHHHHHHHHcCC--CC-cCCcEE
Q 045707 160 DLAQRKLYIGGLSPE-VTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKT-VEAAKKAVDDPH--KT-LGGRTI 234 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~-~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~-~e~A~~Al~~l~--~~-i~g~~l 234 (901)
...+..|||+|++++ ++.++|+++|++||.|.+|.+..+.. .|||+|.+ .++|..|++.++ +. |+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345889999999999 99999999999999999999998765 59999999 899999999996 33 899888
Q ss_pred EEEecc
Q 045707 235 IVKLAD 240 (901)
Q Consensus 235 ~V~~a~ 240 (901)
.++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=6.1e-08 Score=82.05 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCCCCCeEEEeCCCc----CCCH----HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCccccc
Q 045707 68 ADPVHRKLFVRGLAW----NTTS----ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLID 139 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~ 139 (901)
..+...||+|.-.+. ++-. .+|.+.|++||+|..++++.++ +||+|.+.++|.+|++.+|..+.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~ 74 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELL 74 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEET
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeC
Confidence 456788999998772 3333 6788999999999999999874 89999999999999996688899
Q ss_pred ccccccccccc
Q 045707 140 GRLAVCNLACE 150 (901)
Q Consensus 140 g~~i~v~~a~~ 150 (901)
||.|+|+.+.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999998764
No 382
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=9.8e-08 Score=80.79 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=61.3
Q ss_pred cccceEEEcCCC----CCCcH----HHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCC
Q 045707 161 LAQRKLYIGGLS----PEVTT----EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGG 231 (901)
Q Consensus 161 ~~~~~lfV~nLp----~~~te----e~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g 231 (901)
++..+|+|.-.+ .+..+ .+|.+.|++||.|..+++..|+ +||+|.+.++|.+|++ ||+. ++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 346788888766 23434 6789999999999999999864 7999999999999999 9976 999
Q ss_pred cEEEEEeccCC
Q 045707 232 RTIIVKLADTH 242 (901)
Q Consensus 232 ~~l~V~~a~~~ 242 (901)
|.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 383
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=4.1e-08 Score=88.97 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCCCCCeEEEeCCCcC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecc-hhhHHHHhcCC---cccccccc
Q 045707 68 ADPVHRKLFVRGLAWN-TTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKH-MESTQSALRAP---SKLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~-~~~A~~Al~~~---~~~l~g~~ 142 (901)
.-+.+.-|||+||+.+ +++++|+++|++||+|..|.+.++.. .|||.|.+ .++|..|++.+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467889999999999 99999999999999999999988763 59999999 78999998876 45688876
Q ss_pred ccccc
Q 045707 143 AVCNL 147 (901)
Q Consensus 143 i~v~~ 147 (901)
+.+..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2e-07 Score=79.17 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=64.8
Q ss_pred ccCCCCCCCeEEEeCCCcC-----CCH----HHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCc
Q 045707 65 VASADPVHRKLFVRGLAWN-----TTS----ETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPS 135 (901)
Q Consensus 65 ~~~~~~~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~ 135 (901)
.....+...||+|.-++.+ +-. .+|.+.|++||+|..+++..|+ +||+|.+.++|.+|++.++
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG 79 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDG 79 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGG
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCC
Confidence 3456788899999988743 322 5688999999999999999874 9999999999999999668
Q ss_pred cccccccccccccc
Q 045707 136 KLIDGRLAVCNLAC 149 (901)
Q Consensus 136 ~~l~g~~i~v~~a~ 149 (901)
..+.||.++|++..
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 89999999998753
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.31 E-value=8.6e-07 Score=91.00 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=60.3
Q ss_pred CCcHHHHHhhhccCCceeEeeeeccC----CCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEEEeccC
Q 045707 174 EVTTEVLLNFFGRHGEIEEGSVAYDK----DTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIVKLADT 241 (901)
Q Consensus 174 ~~tee~L~~~F~~fG~I~~v~i~~d~----~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V~~a~~ 241 (901)
+-.+++|++.|++||.|.++.+.++. .+|+++|++||+|.+.++|.+|++.|||. ++||.|.+.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999998554 44599999999999999999999999976 9999999999864
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=5e-07 Score=76.81 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=60.6
Q ss_pred ccccceEEEcCCCCC-----CcH----HHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-c
Q 045707 160 DLAQRKLYIGGLSPE-----VTT----EVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-L 229 (901)
Q Consensus 160 ~~~~~~lfV~nLp~~-----~te----e~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i 229 (901)
.++..+|+|.-++.+ +.+ .+|.+.|++||+|..+++..|+ +||+|.+.++|.+|++ |++. +
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345789999988643 323 5688999999999999999874 8999999999999999 8876 9
Q ss_pred CCcEEEEEecc
Q 045707 230 GGRTIIVKLAD 240 (901)
Q Consensus 230 ~g~~l~V~~a~ 240 (901)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998854
No 387
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.17 E-value=1.2e-06 Score=89.81 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHhhhcCCCcchhHHhhhccCCCCCCCeEEEeCCC-----cCCCHHHHHHHHhhcCCeeEEEEEecCC---
Q 045707 38 PLSKSQLVDLLSRLGSQYPSIAEEIKSVASADPVHRKLFVRGLA-----WNTTSETLCAAFRVHGEIEEGAVIYDKA--- 109 (901)
Q Consensus 38 ~~~ee~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp-----~~~te~~L~~~F~~~G~V~~v~i~~~~~--- 109 (901)
..+.+++.+.+.+..... ....+.+.+.|+- .+-.+++|++.|++||+|.++.|+++..
T Consensus 103 ~~~~~~l~~~l~~~l~~~-------------~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~ 169 (222)
T 3dxb_A 103 ALSKGQLKEFLDANLAGS-------------AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE 169 (222)
T ss_dssp CCCHHHHHHHHHHHSCCS-------------CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSS
T ss_pred ccChHHHHHHHHhhcccc-------------ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcc
Confidence 346777777776653321 1123334444442 2345789999999999999999996654
Q ss_pred -CCCcceEEEEEecchhhHHHHhcCC-ccccccccccccccc
Q 045707 110 -TGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVCNLAC 149 (901)
Q Consensus 110 -~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v~~a~ 149 (901)
+|+++|++||+|.+.++|.+|++.+ |..++||.|.+.+..
T Consensus 170 ~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 170 EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4489999999999999999999987 678999999998874
No 388
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=97.98 E-value=5e-05 Score=68.35 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=86.2
Q ss_pred cCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcccc---cCCHHHHHHHHHHHH-hcCCChhHH
Q 045707 531 LGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLEQE---TFNWSMMLRFLRLFR-NLGCSDEQL 606 (901)
Q Consensus 531 lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~~~---~~~~~~~~~~l~fL~-~~G~s~~~i 606 (901)
+|+.++-+.-++.+.|.+|-... -.++++-.||+++|+....+.++|-.+. +..-.+++..+.+|. .+-|+-.++
T Consensus 43 lglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllkekclftvqqv 121 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQV 121 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhhHHHH
Confidence 44444444444444444444444 3444444444444444444444433221 233334445556665 356788999
Q ss_pred hhHhhcCCCeEeeCCCchHHHHHHHHH-hcCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhh
Q 045707 607 GGLIRQHPGLLFEGSGSIALTMIGLLL-KFGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKM 673 (901)
Q Consensus 607 ~~li~~~P~lL~~~~~~~l~p~~~fl~-~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~ 673 (901)
.+++..+|.+|..+.. .+.-++.|-- .+|+...||.+ ...|-+++. .++.+--||..+|-
T Consensus 122 tkilhscpsvlredlg-qleykfqyayfrmgikhpdivk-----seylqyslt-kikqrhiylerlgr 182 (239)
T 4fzv_B 122 TKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSLT-KIKQRHIYLERLGR 182 (239)
T ss_dssp HHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCHH-HHHHHHHHHHHHTC
T ss_pred HHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhH-----HHHHHHHHH-HHHHHHhHHHHhcc
Confidence 9999999999999988 7777777654 79999999876 345778886 78888899998875
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.00014 Score=62.57 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeCCCcCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccccc
Q 045707 68 ADPVHRKLFVRGLAWNTTSETLCAAFRVH-----GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDGRL 142 (901)
Q Consensus 68 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g~~ 142 (901)
.....++|.|.|||.+++++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.++.-.+.++|..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 34567899999999999999999999872 5888877643 3599999999999999999888899988
Q ss_pred cccccccccCCCcCCCCccccceEEEcCCCCCCc
Q 045707 143 AVCNLACEGLSGVSAVPDLAQRKLYIGGLSPEVT 176 (901)
Q Consensus 143 i~v~~a~~~~~~~~~~~~~~~~~lfV~nLp~~~t 176 (901)
+.|..... ....++++.||++.++
T Consensus 76 LsV~P~~~----------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPP----------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCC----------CCCCCCCCCSCCCCCC
T ss_pred EEEEcCCC----------CCcceEeeecCCCCCC
Confidence 88875432 2367899999998875
No 390
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00022 Score=61.70 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=64.6
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccC-----CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRH-----GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTII 235 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~f-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~ 235 (901)
..++|-+-|||+.+++..|+.+.+++ |.+..+.+..|-+ -|+|+|.|...|.+|.-.++|. |.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46889999999999999999999999 9999999888764 5999999999999999999986 9999999
Q ss_pred EEe
Q 045707 236 VKL 238 (901)
Q Consensus 236 V~~ 238 (901)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 391
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00078 Score=58.33 Aligned_cols=73 Identities=10% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCcceEEEEEecchhhHHHHh-cCCccccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVH-----GEIEEGAVIYDKATGKSRGYGFITYKHMESTQSAL-RAPSKLIDGRLA 143 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al-~~~~~~l~g~~i 143 (901)
...++|=+=|||..+++..|+.+.+.+ |.+..+.+..|- |=|+|+|.|..+|-+|. ...|..++|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 458999999999999999999999999 999988888764 34999999999999986 556888999999
Q ss_pred ccccc
Q 045707 144 VCNLA 148 (901)
Q Consensus 144 ~v~~a 148 (901)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 88644
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0016 Score=56.38 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=61.9
Q ss_pred cceEEEcCCCCCC-c----HHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCC-cCCcEEEE
Q 045707 163 QRKLYIGGLSPEV-T----TEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKT-LGGRTIIV 236 (901)
Q Consensus 163 ~~~lfV~nLp~~~-t----ee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~-i~g~~l~V 236 (901)
.++|+|.||+.++ + .+.++++|..|+++......+.-. -..|.|.+.++|.+|...++++ ++|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998877 2 257799999999988877765432 5689999999999999999988 99999999
Q ss_pred EeccC
Q 045707 237 KLADT 241 (901)
Q Consensus 237 ~~a~~ 241 (901)
-++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99983
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.019 Score=49.37 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=62.1
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccC-----CceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCCcEEEE
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRH-----GEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGGRTIIV 236 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~f-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g~~l~V 236 (901)
..++|.|.|||++++++.|.-+|+.- |+|.+++... +-|+|+|.+.+.|++.++.-.+.++|.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 46899999999999999999999762 6788877654 2689999999999999999888899999999
Q ss_pred EeccCC
Q 045707 237 KLADTH 242 (901)
Q Consensus 237 ~~a~~~ 242 (901)
.-..+.
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 775443
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.17 E-value=0.0099 Score=50.48 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
+....||+=++|+.+...||.++|+.||.|. |+.+-|. .|||.|.+++.|..|++..
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3344555559999999999999999999655 6777663 6999999999999998864
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.66 E-value=0.026 Score=48.81 Aligned_cols=73 Identities=11% Similarity=-0.078 Sum_probs=59.6
Q ss_pred CCeEEEeCCCcCC-C----HHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC-ccccccccccc
Q 045707 72 HRKLFVRGLAWNT-T----SETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP-SKLIDGRLAVC 145 (901)
Q Consensus 72 ~~~lfV~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~-~~~l~g~~i~v 145 (901)
-++|+|.||+.++ + .+.++++|..|+++......+. -+-.-|.|.+.++|.+|-..+ +..+.|+.+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999876 2 2578999999999888776643 235899999999999997777 56699999999
Q ss_pred ccccc
Q 045707 146 NLACE 150 (901)
Q Consensus 146 ~~a~~ 150 (901)
.++..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99864
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.40 E-value=0.046 Score=46.44 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=45.6
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
.+.+++ ++|.++...+|.++|+.||.| .|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455666 999999999999999999955 35666553 79999999999999999763
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.30 E-value=0.034 Score=49.53 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCCcccccc-ccccccc
Q 045707 70 PVHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAPSKLIDG-RLAVCNL 147 (901)
Q Consensus 70 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~~~~l~g-~~i~v~~ 147 (901)
.+.+-|-|-+.|... ...+.+.|++||+|.+.... + ...+-.|.|.+..+|++|+..++..+.| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 346789999999885 66788899999999987651 1 2358999999999999999999988875 4444444
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.24 E-value=0.024 Score=48.32 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=44.1
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.||+=++|..+...||.++|+.||.|. |+.+-|. .|||.|.+++.|..|++..
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345449999999999999999999543 6777663 6999999999999998853
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.21 E-value=0.066 Score=47.65 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=57.4
Q ss_pred cccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCCCCcCC-cEEEEEec
Q 045707 161 LAQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPHKTLGG-RTIIVKLA 239 (901)
Q Consensus 161 ~~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~~~i~g-~~l~V~~a 239 (901)
...+.|.|-|.|+.. ...+-..|++||.|.+..... ...+-.|+|.++.+|++|+......++| -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 346789999999985 567778899999999877621 1248899999999999999996666774 66777775
Q ss_pred c
Q 045707 240 D 240 (901)
Q Consensus 240 ~ 240 (901)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 400
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.04 E-value=0.094 Score=44.52 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=58.6
Q ss_pred ceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCC--CceeEEEEEeCCHHHHHHHHHcCCCC--cCC----cEEE
Q 045707 164 RKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTN--ESRGFGFVTYKTVEAAKKAVDDPHKT--LGG----RTII 235 (901)
Q Consensus 164 ~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg--~~kG~aFV~F~~~e~A~~Al~~l~~~--i~g----~~l~ 235 (901)
.+|.|++||++.|++++.+.++....+........+.+. ..-.-|+|.|.+.+++..-.+..+|. ++. .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 478999999999999999999999888777665544322 23456999999999999999999865 322 2345
Q ss_pred EEecc
Q 045707 236 VKLAD 240 (901)
Q Consensus 236 V~~a~ 240 (901)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66654
No 401
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.90 E-value=0.13 Score=43.75 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=48.6
Q ss_pred CeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCC--cceEEEEEecchhhHHHHhcCC
Q 045707 73 RKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGK--SRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 73 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~--~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
++|-|++||+++||+++.+.++.+..+........+.+.. .-.-|||.|.+.+++..-.+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 5799999999999999999999988776655554433322 2356999999999988887763
No 402
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.54 E-value=0.062 Score=45.80 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=45.4
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
...++| ++|.++...+|.++|++||.| .|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999954 46666553 79999999999999999663
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.44 E-value=0.052 Score=60.60 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=44.1
Q ss_pred CCCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 71 VHRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 71 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
..|.|||. .|..+++.+|.++|++||+|.++.+..+ .| -||.|+|.+.++++.++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhcc
Confidence 45899998 7999999999999999999998776654 23 69999999999999887763
No 404
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.95 E-value=0.32 Score=41.55 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=55.8
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCC--CceeEEEEEeCCHHHHHHHHHcCCCC--cCC----cEE
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTN--ESRGFGFVTYKTVEAAKKAVDDPHKT--LGG----RTI 234 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg--~~kG~aFV~F~~~e~A~~Al~~l~~~--i~g----~~l 234 (901)
+-+|.|+.||+..|++++.+.++..-++........+.+. ..-..|||.|++.++...-.+..++. ++. .+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 5679999999999999999999877666554443332221 12235899999999999999999975 322 345
Q ss_pred EEEecc
Q 045707 235 IVKLAD 240 (901)
Q Consensus 235 ~V~~a~ 240 (901)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566664
No 405
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.93 E-value=0.1 Score=58.21 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=43.0
Q ss_pred ccceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHc
Q 045707 162 AQRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDD 224 (901)
Q Consensus 162 ~~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~ 224 (901)
..++|+|. .+..+++.+|.++|++||.|.++....+. | -||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 46889998 79999999999999999999988766543 3 6999999999999977655
No 406
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.37 E-value=0.39 Score=43.33 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeE-eeeeccCC------------CC-CceeEEEEEeCCHHHHHHHHHcCCCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEE-GSVAYDKD------------TN-ESRGFGFVTYKTVEAAKKAVDDPHKT 228 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~-v~i~~d~~------------tg-~~kG~aFV~F~~~e~A~~Al~~l~~~ 228 (901)
...|.|-|.|++.+. .+-+.|++||.|.+ .....+.. .+ ....+..|+|++..+|.+|+......
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456888889766554 56678999999966 22221000 00 13457899999999999999998888
Q ss_pred cCCcEEEEEeccC
Q 045707 229 LGGRTIIVKLADT 241 (901)
Q Consensus 229 i~g~~l~V~~a~~ 241 (901)
++|..|-|....+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887753
No 407
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.19 E-value=0.18 Score=45.55 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeE-EEEEec--------CCCC-----CcceEEEEEecchhhHHHHhcCCccc
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEE-GAVIYD--------KATG-----KSRGYGFITYKHMESTQSALRAPSKL 137 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~~--------~~~g-----~~kG~aFV~F~~~~~A~~Al~~~~~~ 137 (901)
..-|-|=+.|.+.+. .+.+.|++||.|.+ ....++ +... .....-.|+|++..+|.+|+..+|+.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456788888766554 57788999999876 211110 0000 02356789999999999999999999
Q ss_pred ccccccccccc
Q 045707 138 IDGRLAVCNLA 148 (901)
Q Consensus 138 l~g~~i~v~~a 148 (901)
+.|..|-|...
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99986666554
No 408
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=85.68 E-value=8.7 Score=43.94 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=100.6
Q ss_pred hHhHHHHh-hcCccCchhhhHHhhchhhcccChhHHHHHHHHHHH-cCCChhhhhhhhhcCceeeecCCchhHHHHHHH-
Q 045707 487 LENYHVLC-NYGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEM-LGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQI- 563 (901)
Q Consensus 487 ~~~~~~L~-~~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~-lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~- 563 (901)
.+...+|| .+|++.+.+-.|-.+..-=- ..+.+..-+-.|.. .||+..+|.++-.. +.. .-+..+.+.
T Consensus 345 ~~llpvL~~~~gls~~qvVaIAsn~GGkQ--ALe~V~~llp~L~~~~gls~~~vvaiA~~------GG~-qALe~V~~L~ 415 (1047)
T 3ugm_A 345 QRLLPVLCQAHGLTPDQVVAIASNGGGKQ--ALETVQRLLPVLCQAHGLTPDQVVAIASN------GGK-QALETVQRLL 415 (1047)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHSSTTHHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHH------THH-HHHHHHHHHH
T ss_pred HHHhhhhhhhccCCHHHhhhhhhcCchHH--HHHHHHHhhhhhhhhcCCCHHHHHHHhcc------cch-hHHHHHhhcc
Confidence 33344556 46777766666643322100 11222233333333 67777777776431 111 223233222
Q ss_pred --HH-hcCCcchhhhhhhcccc-cCCHHHHHHHHHHHH-hcCCChhHHhhHhhcCCCeEeeCCCchHHH---HHHHHH-h
Q 045707 564 --LK-SMEIESCWIEEHLLEQE-TFNWSMMLRFLRLFR-NLGCSDEQLGGLIRQHPGLLFEGSGSIALT---MIGLLL-K 634 (901)
Q Consensus 564 --L~-~lGv~~~~l~~~l~~~~-~~~~~~~~~~l~fL~-~~G~s~~~i~~li~~~P~lL~~~~~~~l~p---~~~fl~-~ 634 (901)
|. +-|+..+++.++-+-.. ....+-+...+-.|. ..||+.++|.+|-...- -..-|.- .+..|+ .
T Consensus 416 p~l~~~~glt~~qvv~IAsn~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~G------GkQALeaV~~llpvl~~~ 489 (1047)
T 3ugm_A 416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDG------GKQALETVQQLLPVLCQA 489 (1047)
T ss_dssp HHHHTTSSCCHHHHHHHHSSTTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTT------HHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcCCCHHHhhhhhccCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHh
Confidence 22 46777777766644221 122222222323333 57888888877765421 1111222 122233 3
Q ss_pred cCCChHHHHHHHhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccccccccccchHHHHH-HcCCchhHHhH
Q 045707 635 FGSTRNELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILA-YLNVGKKRLCE 713 (901)
Q Consensus 635 lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~-~lg~~~~~l~~ 713 (901)
.|++.++|..|..++-.--...--..+.|.+. +..|++.++|.+|-....---..+......+.|+ ..|++.+.+..
T Consensus 490 ~gls~~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGkQALeaV~~~lp~Lr~a~~ls~~qVVa 567 (1047)
T 3ugm_A 490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567 (1047)
T ss_dssp SCCCSHHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCHHHHHHHHHHHHHHTTTSCCTHHHHHH
T ss_pred cCCCHHHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHHHHHHHHHHHhHHHHHHhCCCHHHeee
Confidence 68888888887655443111111112222222 4677888888777533221111234455566666 37777777777
Q ss_pred H
Q 045707 714 Y 714 (901)
Q Consensus 714 i 714 (901)
|
T Consensus 568 I 568 (1047)
T 3ugm_A 568 I 568 (1047)
T ss_dssp H
T ss_pred e
Confidence 6
No 409
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=84.04 E-value=8.1 Score=44.18 Aligned_cols=144 Identities=10% Similarity=0.035 Sum_probs=67.1
Q ss_pred cCCcchhhhhhhccc-ccCCHHHHHHHHHHHHh-cCCChhHHhhHhhcCCCeEeeCCCchHHH---HHHHHH-hcCCChH
Q 045707 567 MEIESCWIEEHLLEQ-ETFNWSMMLRFLRLFRN-LGCSDEQLGGLIRQHPGLLFEGSGSIALT---MIGLLL-KFGSTRN 640 (901)
Q Consensus 567 lGv~~~~l~~~l~~~-~~~~~~~~~~~l~fL~~-~G~s~~~i~~li~~~P~lL~~~~~~~l~p---~~~fl~-~lG~s~~ 640 (901)
-|++.+++-.+-+-. .....+-+...+--|.. .|||.++|.+|-.. .-..-|.- .+..|+ +-|++.+
T Consensus 355 ~gls~~qvVaIAsn~GGkQALe~V~~llp~L~~~~gls~~~vvaiA~~-------GG~qALe~V~~L~p~l~~~~glt~~ 427 (1047)
T 3ugm_A 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN-------GGKQALETVQRLLPVLCQAHGLTPD 427 (1047)
T ss_dssp SCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH-------THHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred ccCCHHHhhhhhhcCchHHHHHHHHHhhhhhhhhcCCCHHHHHHHhcc-------cchhHHHHHhhccchhhhhcCCCHH
Confidence 566666655553321 11222223333333443 57777776666541 10111221 222233 4677777
Q ss_pred HHHHHHhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHhCccccccccccchHHHHHH-cCCchhHHhHHHHhCc
Q 045707 641 ELCSIFLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAY-LNVGKKRLCEYIQENP 719 (901)
Q Consensus 641 ~i~~~l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~-lg~~~~~l~~ii~~~P 719 (901)
+|.+|-..+-.--....-..+.|.+. +.-|++.++|.+|-....--...+....+.+.+.. .|++.+++..|..++-
T Consensus 428 qvv~IAsn~GGkQALe~V~~llp~L~--~~~glt~aqvVaIAsn~GGkQALeaV~~llpvl~~~~gls~~qvvaiA~n~G 505 (1047)
T 3ugm_A 428 QVVAIASHDGGKQALETVQRLLPVLC--QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIG 505 (1047)
T ss_dssp HHHHHHSSTTTHHHHHHHHHHHHHHH--TTSCCCHHHHHHHSSSTTHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHSSTT
T ss_pred HhhhhhccCchHHHHHHHHHHhHHhh--cccCCCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhccc
Confidence 77776655443211111111222111 24667777777764322221112334455565554 7888887777754443
No 410
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=82.81 E-value=2 Score=46.47 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCChHHHHHHHhhCCcc--e-ehhc-cccch
Q 045707 587 SMMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGSTRNELCSIFLQFPQI--E-VRKF-LLNLN 662 (901)
Q Consensus 587 ~~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s~~~i~~~l~~~P~l--l-~~s~-e~~l~ 662 (901)
......|+-|.++||+.+++.+.++.. .++....++||. -|+....... ...|.- . .... ...-.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~--------~nn~~~A~e~L~-~gip~~~~~~--~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLL-TGIPGSPEPE--HGSVQESQVSEQPATEAAGE 234 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHS--------CSSTTHHHHTTT-TSSTTCSSCC--CCCCCCCCSSCCCCSSCCSC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH-hCCCcccccc--cCCccccccccccCcccccc
Confidence 345568999999999999999999864 236667889996 3665431000 000000 0 0000 00001
Q ss_pred HHHHHHHHhhhchhHHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHh
Q 045707 663 QCLLFLFEIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKL 725 (901)
Q Consensus 663 p~~~fL~~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~ 725 (901)
..++||+.- =.-.+++.+|..+|.+| .++|..+|-..-.+..+|..+|+.+...
T Consensus 235 ~~l~~Lr~~-pqf~~lR~~vq~nP~~l--------~~~lq~l~~~nP~l~~~I~~n~~~Fl~~ 288 (368)
T 1oqy_A 235 NPLEFLRDQ-PQFQNMRQVIQQNPALL--------PALLQQLGQENPQLLQQISRHQEQFIQM 288 (368)
T ss_dssp CTTHHHHHS-HHHHHHHHSTTTCTTHH--------HHHHTTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhcC-hHHHHHHHHHHhChHHH--------HHHHHHHHhhCHHHHHHHHHCHHHHHHH
Confidence 125677652 12357788888889886 6788888888889999999999877653
No 411
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=82.23 E-value=0.68 Score=39.52 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=40.8
Q ss_pred CCeEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCC-CC-cceEEEEEecchhhHHHHhcCC
Q 045707 72 HRKLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKAT-GK-SRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 72 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~-g~-~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.-+|-|+.||+++||+++.+.++.+=++........+.+ +. .-..|||.|.+.++...-.+..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 457999999999999998776655433221111111111 11 1245999999999988887764
No 412
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=80.12 E-value=64 Score=34.10 Aligned_cols=208 Identities=10% Similarity=0.060 Sum_probs=89.5
Q ss_pred cCccCchhhhHHhhchhhcccChhHHHHHHHHHHH-cCCChhhhhhhhhcCceeeecCCchhHHHHHHHHHh-cCCcchh
Q 045707 496 YGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEM-LGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQILKS-MEIESCW 573 (901)
Q Consensus 496 ~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~-lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~-lGv~~~~ 573 (901)
++++...+-.|-++...-- ..+.+...+..|.. +|++.++|.+|-...--= ..-+-+..++..|.. -|++..+
T Consensus 140 l~Lsp~qvVaIAsn~GGkq--ALeaV~~llpvL~~a~~Ls~~qVVaIAsn~GGk---QALeaV~~llpvl~~~~~Ls~aq 214 (463)
T 4hpz_A 140 LNLTPDQVVAIASNIGGKQ--ALETVQRLLPVLCQDHGLTPQQVVAIASNGGGK---QALETVQRLLPVLCQAHGLTPDQ 214 (463)
T ss_dssp TCCCHHHHHHHHSSTTHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHTSTTHH---HHHHHHHHHHHHHHHHHCCCHHH
T ss_pred cCCCHHHHHHHHhcCccHH--HHHHHHHHHHHHhhhcCCCHHHHHHHhhcCchH---HHHHHHHHHHHHhhccccCCHHH
Confidence 5777777766654433100 01222223333332 677777777764221100 000111112222322 4667666
Q ss_pred hhhhhccc-ccCCHHHHHHHHHHHH-hcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHh-cCCChHHHHHHHhhCC
Q 045707 574 IEEHLLEQ-ETFNWSMMLRFLRLFR-NLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLK-FGSTRNELCSIFLQFP 650 (901)
Q Consensus 574 l~~~l~~~-~~~~~~~~~~~l~fL~-~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~-lG~s~~~i~~~l~~~P 650 (901)
+-.+-+-. .....+-+...+--|+ .+||+.++|.+|-...-.- ..-+.....+--|+. .|++.++|..|-...-
T Consensus 215 VVaIAsn~GGkQALeaV~~llpvl~~~~gls~aqVVaIAsn~GGk---QALeaV~~llP~L~~~~gls~~qVVaIAsN~G 291 (463)
T 4hpz_A 215 VVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIASNIGGK---QALETVQRLLPVLCQDHGLTPDQVVAIASNDG 291 (463)
T ss_dssp HHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHHHTTCCCHHHHHHHHTSTT
T ss_pred HHHHhhccccHHHHHHHHhhhhhhhhhccCCHHHHHHHhcccchH---HHHHHHHhhchhhhhccCCCHHHhhhhhcCcc
Confidence 66654411 1122222223333333 3677777777666533100 000012222223333 5777777776555443
Q ss_pred cceehhccccchHHHHHHH-HhhhchhHHHHHHHhCccccccccccchHHHHHH-cCCchhHHhHH
Q 045707 651 QIEVRKFLLNLNQCLLFLF-EIKMKVDEIGKILRCHFLLVGSCTLKKTNTILAY-LNVGKKRLCEY 714 (901)
Q Consensus 651 ~ll~~s~e~~l~p~~~fL~-~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~-lg~~~~~l~~i 714 (901)
.--... .+..-.--|+ ..|++.++|.+|-....---..+..+...+.++. .|++..++..|
T Consensus 292 GkQALe---aV~~l~p~Lr~~~~ls~~qVVaIAsN~GGkQALeaV~~llp~Lr~~~~ls~~qVvaI 354 (463)
T 4hpz_A 292 GKQALE---TVQRLLPVLCQDHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 354 (463)
T ss_dssp HHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHH---HHHHHhHHHHhhcCCCHHHhhhhhcCcchHHHHHHHHHhhhhcchhccCCHHHhHhh
Confidence 211111 1111122222 2566666666664332221112444555555553 56666666665
No 413
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=80.10 E-value=3.6 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhc
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
+..|+.||.+-|++.+||..++++.
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 8899999999999999999998873
No 414
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=77.25 E-value=14 Score=32.69 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcC
Q 045707 522 QSKLHAYEMLGLSQSFISKVIVCS 545 (901)
Q Consensus 522 ~~~l~~L~~lG~~~~~i~~~v~~~ 545 (901)
+..|.-|.++||+...+.+++..+
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~ 32 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAA 32 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345667777777777777775544
No 415
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=74.31 E-value=19 Score=38.05 Aligned_cols=142 Identities=9% Similarity=0.054 Sum_probs=67.2
Q ss_pred cCCcchhhhhhhcccccCCHHHHHHHHHHHHh--cCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH-hcCCChHHHH
Q 045707 567 MEIESCWIEEHLLEQETFNWSMMLRFLRLFRN--LGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL-KFGSTRNELC 643 (901)
Q Consensus 567 lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~--~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~-~lG~s~~~i~ 643 (901)
+|++..++..+-+.......+-+.....-|.. +++|++||.+|-...-.- ..-+.+...+.-|+ ..|++.++|.
T Consensus 106 ~~l~~~qiv~IA~~Gg~~Aleav~~~~~~L~~apl~Lsp~qvVaIAsn~GGk---qALeaV~~llpvL~~a~~Ls~~qVV 182 (463)
T 4hpz_A 106 LQLDTGQLLKIAKRGGVTAVEVHHTWRNALTGAPLNLTPDQVVAIASNIGGK---QALETVQRLLPVLCQDHGLTPQQVV 182 (463)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHSTTTCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCCHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCccH---HHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 45666665555442222223333333344444 677888877776543210 00002222333334 3678888877
Q ss_pred HHHhhCCcceehhccccchHHHHHHHH-hhhchhHHHHHHHhCccccccccccchHHHHH-HcCCchhHHhHH
Q 045707 644 SIFLQFPQIEVRKFLLNLNQCLLFLFE-IKMKVDEIGKILRCHFLLVGSCTLKKTNTILA-YLNVGKKRLCEY 714 (901)
Q Consensus 644 ~~l~~~P~ll~~s~e~~l~p~~~fL~~-~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~-~lg~~~~~l~~i 714 (901)
.|-...-.-- -++ .+......|.. .|++.++|.+|-....---..+......+.+. ..|++..++..|
T Consensus 183 aIAsn~GGkQ--ALe-aV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQALeaV~~llpvl~~~~gls~aqVVaI 252 (463)
T 4hpz_A 183 AIASNGGGKQ--ALE-TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAI 252 (463)
T ss_dssp HHHTSTTHHH--HHH-HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHhhcCchHH--HHH-HHHHHHHHhhccccCCHHHHHHHhhccccHHHHHHHHhhhhhhhhhccCCHHHHHHH
Confidence 7654433100 011 12223333433 57777777777532211111133444556664 367777777776
No 416
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=69.13 E-value=8.8 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhc
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
+..|+.||++-|++.+||..++++.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 8899999999999999999999885
No 417
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=68.31 E-value=6.2 Score=29.53 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=21.6
Q ss_pred HhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHh
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRC 684 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~ 684 (901)
++.+|.+-... +..+++||++-|++.++|..++.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44466654443 345677777777777777666654
No 418
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=67.28 E-value=28 Score=30.81 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH------hcCCChHHHHHHHhhCCcceehhccccchHHH
Q 045707 592 FLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL------KFGSTRNELCSIFLQFPQIEVRKFLLNLNQCL 665 (901)
Q Consensus 592 ~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~------~lG~s~~~i~~~l~~~P~ll~~s~e~~l~p~~ 665 (901)
.|+-|.++||+...+.+.+...- . +....++||. +.|++..++-..+..+..--.. ...-...+
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g-------~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~~v 80 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAG-------A-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQLM 80 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHC-------S-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHC-------c-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHHHH
Confidence 45666667777776666665431 1 3455555553 3355555555544432210000 00111235
Q ss_pred HHHHHhhhchhHHHHHHH
Q 045707 666 LFLFEIKMKVDEIGKILR 683 (901)
Q Consensus 666 ~fL~~~g~~~~~i~~~l~ 683 (901)
.-|.++|++.+.+.+.|.
T Consensus 81 ~~L~eMGF~~~~a~~AL~ 98 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLL 98 (118)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 555556666665555553
No 419
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=59.84 E-value=2 Score=48.17 Aligned_cols=13 Identities=23% Similarity=0.084 Sum_probs=7.1
Q ss_pred CHHHHHHHHH-cCC
Q 045707 214 TVEAAKKAVD-DPH 226 (901)
Q Consensus 214 ~~e~A~~Al~-~l~ 226 (901)
+.+.|.+-++ -+.
T Consensus 272 ~~e~A~~fl~~~l~ 285 (449)
T 3iot_A 272 NKELAKEFLENYLL 285 (449)
T ss_dssp CHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhc
Confidence 4566666664 443
No 420
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=54.83 E-value=11 Score=40.64 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcchhhhhhhcccccCCHHHHHHHHHHHHhcCCCh
Q 045707 557 FVEVLQILKSMEIESCWIEEHLLEQETFNWSMMLRFLRLFRNLGCSD 603 (901)
Q Consensus 557 l~~~v~~L~~lGv~~~~l~~~l~~~~~~~~~~~~~~l~fL~~~G~s~ 603 (901)
....|..|.++|++.+.+.+.|.... + ++..-++||.+ |+.+
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~---n-n~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASY---N-NPHRAVEYLLT-GIPG 209 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSC---S-STTHHHHTTTT-SSTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcC---C-CHHHHHHHHHh-CCCc
Confidence 45678899999999999999888443 2 56677888864 5654
No 421
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=53.61 E-value=2.3e+02 Score=30.24 Aligned_cols=311 Identities=12% Similarity=0.086 Sum_probs=152.7
Q ss_pred HhHhHHHHhh-cCccCchhhhHHhhchhhcccChhHHHHHHHHHHH-cCCChhhhhhhhhcCceeeecCCchhHHHHHHH
Q 045707 486 LLENYHVLCN-YGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEM-LGLSQSFISKVIVCSPYLLIGDVNTEFVEVLQI 563 (901)
Q Consensus 486 ~~~~~~~L~~-~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~-lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~v~~ 563 (901)
+.....+||. +|++..++-.|-.+..--- ..+.++..+..|.. +|++.++|.+|-...-- -..-+.+...+-.
T Consensus 88 V~~l~p~L~~a~gLs~~qVVaIAsn~GGkq--ALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GG---kQALeaV~~llpv 162 (499)
T 3v6t_A 88 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQ--ALETVQRLLPVLCQAHGLTPEQVVAIASHDGG---KQALETVQALLPV 162 (499)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHSSTTHHH--HHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHhhhhhhcCccHH--HHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCc---HHHHHHHHHhhHH
Confidence 3344556788 8999988888865532100 11233334444443 89999999988321000 0000112222223
Q ss_pred HH-hcCCcchhhhhhhccc-ccCCHHHHHHHHHHHHh-cCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHh-cCCCh
Q 045707 564 LK-SMEIESCWIEEHLLEQ-ETFNWSMMLRFLRLFRN-LGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLK-FGSTR 639 (901)
Q Consensus 564 L~-~lGv~~~~l~~~l~~~-~~~~~~~~~~~l~fL~~-~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~-lG~s~ 639 (901)
|. .-|++..++..+-+-. .....+-+...+--|+. +||+.++|.+|-...-.- -.-+.+...+--|+. .|++.
T Consensus 163 L~~a~gls~~qVvaIAsN~GGkQALeaV~~llpvl~~~~gls~~qVVaiAsn~GGk---QALeaV~~llp~L~~a~~ls~ 239 (499)
T 3v6t_A 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK---QALETVQRLLPVLCQAHGLTP 239 (499)
T ss_dssp HHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHTTTSCCCH
T ss_pred HHHhcCCCHHHHHHHhcccchHHHHHHHHHhhhhHHhhccCCHHHHHHHhhccchH---HHHHHHHHhhhHHHhhcCCCH
Confidence 43 3788888887775522 12233333344445554 799999998887543100 000122222333443 59999
Q ss_pred HHHHHHHhhCCcceehhccccchHHHHHHH-HhhhchhHHHHHHHhCccccccccccchHHHHH-HcCCchhHHhHHHHh
Q 045707 640 NELCSIFLQFPQIEVRKFLLNLNQCLLFLF-EIKMKVDEIGKILRCHFLLVGSCTLKKTNTILA-YLNVGKKRLCEYIQE 717 (901)
Q Consensus 640 ~~i~~~l~~~P~ll~~s~e~~l~p~~~fL~-~~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~-~lg~~~~~l~~ii~~ 717 (901)
++|..|-.+.-.--.. + .+..-.--|. ..|++.++|.+|-....---..+......+.++ ..|++..++..|-.+
T Consensus 240 ~qVvaIAsN~GGkQAL--e-aV~~~lpvl~~~~~lt~aqVVaIAsn~GGkQALeaV~~llpvL~~~~~L~~~qVvaIAsN 316 (499)
T 3v6t_A 240 QQVVAIASNGGGKQAL--E-TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316 (499)
T ss_dssp HHHHHHHHSSCHHHHH--H-HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTS
T ss_pred HHhhhhhcccchHHHH--H-HHHHhcccccccccCCHHHeeeeccCCccHHHHHHHHHhhHHHHHhcCCCHHHHHHHhhC
Confidence 9998876655421111 1 1111222233 378899888887522211111233455566666 468888888887433
Q ss_pred CchHHHHhhhccccCCCCchhhHHHHHHHHhhh-ccCcccChHHHHHHHHHHhc-cc-HH-HH---HHHHHHH-HcCCCH
Q 045707 718 NPLELKKLALGSRVGRLPAEKERSQLLRTKFLL-DVGYVENSNEMAKALKHFRG-RG-AE-LQ---ERFDCLV-NAGLDR 789 (901)
Q Consensus 718 ~P~~l~~~~~~~~~~~~~~~~~~~~~~k~~~L~-~lG~~~~~~~~~~a~~~~~~-~~-~~-l~---~r~~~L~-~~G~s~ 789 (901)
.-.-= -.+....-...|. ..|++... +..+.+ .+ .. |+ .-.-.|. ..|++.
T Consensus 317 ~GGkQ---------------ALeaV~~l~p~L~~a~gls~~q------VVaIAsn~GGkQALeaV~~llpvL~~a~~Ls~ 375 (499)
T 3v6t_A 317 GGGKQ---------------ALETVQRLLPVLCQAHGLTPQQ------VVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375 (499)
T ss_dssp TTHHH---------------HHHHHHHHHHHHHHTSCCCHHH------HHHHHSSTTHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CchHH---------------HHHHHHHHhHHHHHhcCCCHHH------HHHHhccCccHHHHHHHHHhCcchHhhhcCCH
Confidence 32110 0111111112222 12332211 111222 11 11 33 3344444 369999
Q ss_pred HHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCcccccc
Q 045707 790 KDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVS 830 (901)
Q Consensus 790 ~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~ 830 (901)
++|..+-...-- .+-.|.++.-.--|....|++..+++.
T Consensus 376 ~qVVaIAsn~GG--kqALeaV~~llpvl~~~~~Ls~aqVVa 414 (499)
T 3v6t_A 376 EQVVAIASNGGG--KQALETVQRLLPVLCQAHGLTPEQVVA 414 (499)
T ss_dssp HHHHHHHSSTTH--HHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhHHhcccc--HHHHHHHHHHHHHhhhhccCCHHHeee
Confidence 999875433210 012344444555556567888887763
No 422
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=52.56 E-value=15 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=22.2
Q ss_pred HhhCCcceehhccccchHHHHHHHHhhhchhHHHHHHHh
Q 045707 646 FLQFPQIEVRKFLLNLNQCLLFLFEIKMKVDEIGKILRC 684 (901)
Q Consensus 646 l~~~P~ll~~s~e~~l~p~~~fL~~~g~~~~~i~~~l~~ 684 (901)
++.+|.+-... +..+++||++-|++.++|...+.+
T Consensus 24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34566654443 345677777777777777777655
No 423
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=51.21 E-value=24 Score=39.87 Aligned_cols=55 Identities=25% Similarity=0.291 Sum_probs=44.1
Q ss_pred cceEEEcCCCCCCcHHHHHhhhccCCceeEeeeeccCCCCCceeEEEEEeCCHHHHHHHHHcCC
Q 045707 163 QRKLYIGGLSPEVTTEVLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAVDDPH 226 (901)
Q Consensus 163 ~~~lfV~nLp~~~tee~L~~~F~~fG~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Al~~l~ 226 (901)
...++|+ ++..+...+|.+.|+.||.+ +|+.+-+ ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4456665 88999999999999999954 4554433 279999999999999999875
No 424
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.91 E-value=3.4 Score=53.49 Aligned_cols=6 Identities=33% Similarity=0.833 Sum_probs=2.4
Q ss_pred EEEcCC
Q 045707 166 LYIGGL 171 (901)
Q Consensus 166 lfV~nL 171 (901)
|.+|.+
T Consensus 1434 Ii~G~~ 1439 (1752)
T 3h0g_A 1434 IMLGQL 1439 (1752)
T ss_dssp GGTCSC
T ss_pred hhcCCC
Confidence 344433
No 425
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=49.67 E-value=1.6e+02 Score=31.52 Aligned_cols=297 Identities=11% Similarity=0.074 Sum_probs=149.3
Q ss_pred cCccCchhhhHHhhchhhcccChhHHHHHHHHHHH-cCCChhhhhhhhhcCceeeecCCchhHHHH---HHHHHh-cCCc
Q 045707 496 YGVARNKIGKILKEAREVFQFDVGVFQSKLHAYEM-LGLSQSFISKVIVCSPYLLIGDVNTEFVEV---LQILKS-MEIE 570 (901)
Q Consensus 496 ~g~~~~~i~~l~~~~~~i~~~~~~~l~~~l~~L~~-lG~~~~~i~~~v~~~P~lL~~~~~~~l~~~---v~~L~~-lGv~ 570 (901)
++++..++-.|-.+...-- ..+.+...+..|.. +|+++++|.+|-...-- ..-+..+ +..|.. .|++
T Consensus 65 l~ls~~qvvaIA~n~GGkq--AleaV~~l~p~L~~a~gLs~~qVVaIAsn~GG------kqALe~V~~~lpvL~~~~~Ls 136 (499)
T 3v6t_A 65 LNLTPEQVVAIASHDGGKQ--ALETVQRLLPVLCQAHGLTPQQVVAIASHDGG------KQALETVQRLLPVLCQAHGLT 136 (499)
T ss_dssp TCCCHHHHHHHHSSTTHHH--HHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTH------HHHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHhcCCCHHHhhhhhhcCcc------HHHHHHHHHhhHHhhhhcCCC
Confidence 5888888877765433210 11223333333434 89999999998533210 0122222 223332 6888
Q ss_pred chhhhhhhcc-cccCCHHHHHHHHHHHH-hcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHh-cCCChHHHHHHHh
Q 045707 571 SCWIEEHLLE-QETFNWSMMLRFLRLFR-NLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLK-FGSTRNELCSIFL 647 (901)
Q Consensus 571 ~~~l~~~l~~-~~~~~~~~~~~~l~fL~-~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~-lG~s~~~i~~~l~ 647 (901)
..++-.+-+- .......-+...+--|+ .+||+.++|.+|-...-.- ..-+.++..+--|+. .|++.++|..|-.
T Consensus 137 ~~qVVaIAsn~GGkQALeaV~~llpvL~~a~gls~~qVvaIAsN~GGk---QALeaV~~llpvl~~~~gls~~qVVaiAs 213 (499)
T 3v6t_A 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK---QALETVQRLLPVLCQAHGLTPQQVVAIAS 213 (499)
T ss_dssp HHHHHHHHSSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHhHHHhhcCCcHHHHHHHHHhhHHHHHhcCCCHHHHHHHhcccchH---HHHHHHHHhhhhHHhhccCCHHHHHHHhh
Confidence 8888777552 12233344444445555 4899999999887642100 000122223334444 7999999998765
Q ss_pred hCCcceehhccccchHHHHHHHH-hhhchhHHHHHHHhCccccccccccchHHHHHH-cCCchhHHhHHHHhCchHHHHh
Q 045707 648 QFPQIEVRKFLLNLNQCLLFLFE-IKMKVDEIGKILRCHFLLVGSCTLKKTNTILAY-LNVGKKRLCEYIQENPLELKKL 725 (901)
Q Consensus 648 ~~P~ll~~s~e~~l~p~~~fL~~-~g~~~~~i~~~l~~~P~il~~~~~~~~~~~l~~-lg~~~~~l~~ii~~~P~~l~~~ 725 (901)
..-.-- -++ .+..-.--|.. .|++.++|.+|-....---..+......+.++. .|++..++..|-.+.-.-=
T Consensus 214 n~GGkQ--ALe-aV~~llp~L~~a~~ls~~qVvaIAsN~GGkQALeaV~~~lpvl~~~~~lt~aqVVaIAsn~GGkQ--- 287 (499)
T 3v6t_A 214 NGGGKQ--ALE-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ--- 287 (499)
T ss_dssp STTHHH--HHH-HHHHHHHHHTTTSCCCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHHH---
T ss_pred ccchHH--HHH-HHHHhhhHHHhhcCCCHHHhhhhhcccchHHHHHHHHHhcccccccccCCHHHeeeeccCCccHH---
Confidence 443210 011 12222223333 588888888886443322112445556677775 7999888888743332100
Q ss_pred hhccccCCCCchhhHHHHHHHHhhh-ccCcccChHHHHHHHHHHhccc--H---H-HHHHHHHHH-HcCCCHHHHHHHHh
Q 045707 726 ALGSRVGRLPAEKERSQLLRTKFLL-DVGYVENSNEMAKALKHFRGRG--A---E-LQERFDCLV-NAGLDRKDVCEMIR 797 (901)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~k~~~L~-~lG~~~~~~~~~~a~~~~~~~~--~---~-l~~r~~~L~-~~G~s~~~v~~mi~ 797 (901)
-.+....-.-.|. ..|+.. .. +..+.+.. . | ++.-.--|. ..|++.++|..|-.
T Consensus 288 ------------ALeaV~~llpvL~~~~~L~~--~q----VvaIAsN~GGkQALeaV~~l~p~L~~a~gls~~qVVaIAs 349 (499)
T 3v6t_A 288 ------------ALETVQRLLPVLCQAHGLTP--QQ----VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349 (499)
T ss_dssp ------------HHHHHHHHHHHHHTTTCSCH--HH----HHHHHTSTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHS
T ss_pred ------------HHHHHHHhhHHHHHhcCCCH--HH----HHHHhhCCchHHHHHHHHHHhHHHHHhcCCCHHHHHHHhc
Confidence 0111111112222 122221 11 11222211 1 2 444445555 47999999987543
Q ss_pred hcCCccccCHHHHHHHHHHHHHhcCCCccccc
Q 045707 798 VSPQILNMKKDVIKSKIDFLVNYLGYPLSFLV 829 (901)
Q Consensus 798 ~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~ 829 (901)
..- =.+-.|.++.-.--|+...|++.+.|+
T Consensus 350 n~G--GkQALeaV~~llpvL~~a~~Ls~~qVV 379 (499)
T 3v6t_A 350 HDG--GKQALETVQRLLPVLCQAHGLTPEQVV 379 (499)
T ss_dssp STT--HHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred cCc--cHHHHHHHHHhCcchHhhhcCCHHHHH
Confidence 210 011234445555556666788887765
No 426
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.31 E-value=21 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHH
Q 045707 773 AELQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVN 819 (901)
Q Consensus 773 ~~l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~ 819 (901)
...+++++-|+++||+++++...++.+= .+++.-++||.+
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASY-------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTT-------SCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 4467888999999999999998877643 146667788876
No 427
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.27 E-value=4.5 Score=52.45 Aligned_cols=7 Identities=0% Similarity=0.297 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 045707 88 TLCAAFR 94 (901)
Q Consensus 88 ~L~~~F~ 94 (901)
+|.++++
T Consensus 1337 dI~ei~~ 1343 (1752)
T 3h0g_A 1337 SFVEILQ 1343 (1752)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 3333333
No 428
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=44.10 E-value=24 Score=39.85 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=42.3
Q ss_pred eEEEeCCCcCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcceEEEEEecchhhHHHHhcCC
Q 045707 74 KLFVRGLAWNTTSETLCAAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQSALRAP 134 (901)
Q Consensus 74 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~~~~~g~~kG~aFV~F~~~~~A~~Al~~~ 134 (901)
.++|+ +|..+...+|.+.|+.||.| +|+.+-+ ..|||.|.+.+.|..+++..
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 45665 99999999999999999964 4655544 36999999999999998874
No 429
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=41.94 E-value=5.4 Score=51.71 Aligned_cols=6 Identities=33% Similarity=0.357 Sum_probs=2.6
Q ss_pred eeEEEE
Q 045707 99 IEEGAV 104 (901)
Q Consensus 99 V~~v~i 104 (901)
|..|.+
T Consensus 1279 I~r~~i 1284 (1733)
T 1twf_A 1279 IERVVM 1284 (1733)
T ss_dssp CCCEEE
T ss_pred ccEEEE
Confidence 444443
No 430
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.17 E-value=27 Score=25.94 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=8.1
Q ss_pred HHHHHcCCCHHHHHHHHh
Q 045707 780 DCLVNAGLDRKDVCEMIR 797 (901)
Q Consensus 780 ~~L~~~G~s~~~v~~mi~ 797 (901)
+-|.++||+.+.+...++
T Consensus 14 q~L~eMGFd~erae~Alk 31 (54)
T 2cos_A 14 QELVNAGCDQEMAGRALK 31 (54)
T ss_dssp HHHHHHHCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 344455555544444333
No 431
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=38.48 E-value=1e+02 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=10.2
Q ss_pred HHHHHHhcCCChhHHhhHhh
Q 045707 592 FLRLFRNLGCSDEQLGGLIR 611 (901)
Q Consensus 592 ~l~fL~~~G~s~~~i~~li~ 611 (901)
+++||..-||+.+.|..++.
T Consensus 138 ~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 138 AADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHHHh
Confidence 44455555555555555444
No 432
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.68 E-value=32 Score=24.76 Aligned_cols=35 Identities=14% Similarity=0.435 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHH
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVN 819 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~ 819 (901)
..++-|+++||+++++...++.+ + +++.-++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~----~----n~e~A~~~L~~ 45 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT----S----TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS----C----SHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C----CHHHHHHHHHc
Confidence 56677888888888888877775 2 36667777764
No 433
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.31 E-value=48 Score=27.23 Aligned_cols=45 Identities=22% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccc
Q 045707 776 QERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSF 827 (901)
Q Consensus 776 ~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~ 827 (901)
+++++-|+.+||+++++..+++.+- .+++.-++||.+..|-.+++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~~ip~~ 74 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGGSLPPD 74 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCCCCchh
Confidence 3567778888999988887776432 34788888888876633333
No 434
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=36.59 E-value=31 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Q 045707 774 ELQERFDCLVNAGLDRKDVCEMIR 797 (901)
Q Consensus 774 ~l~~r~~~L~~~G~s~~~v~~mi~ 797 (901)
.|...+.-|+++||+++++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 367788899999999999987654
No 435
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=35.24 E-value=47 Score=31.34 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHhCccccccccccchHHHHHHcCCchhHHhHHHHhCchHHHHh
Q 045707 677 EIGKILRCHFLLVGSCTLKKTNTILAYLNVGKKRLCEYIQENPLELKKL 725 (901)
Q Consensus 677 ~i~~~l~~~P~il~~~~~~~~~~~l~~lg~~~~~l~~ii~~~P~~l~~~ 725 (901)
++..+|..+|.+| .++|..+|-..-.+..+|..+|+.+...
T Consensus 37 qlRq~vqqNPqlL--------~~lLqqig~~NPqL~qlI~qNqe~Fl~m 77 (171)
T 2qsf_X 37 SLRQVVSGNPEAL--------APLLENISARYPQLREHIMANPEVFVSM 77 (171)
T ss_dssp HHHHHHHTCGGGH--------HHHHHHHHHHCTTHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHCHHHH--------HHHHHHHHhhCHHHHHHHHHCHHHHHHH
Confidence 4567777788775 5667777777777778888888866553
No 436
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=34.66 E-value=41 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHh
Q 045707 773 AELQERFDCLVNAGLDRKDVCEMIR 797 (901)
Q Consensus 773 ~~l~~r~~~L~~~G~s~~~v~~mi~ 797 (901)
+.....+.-|+++||+++++.+.+.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHH
Confidence 4467888999999999999987654
No 437
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=34.36 E-value=39 Score=24.94 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRV 798 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~ 798 (901)
+...++-|+++||+++++.+.++.
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 557888999999999999876553
No 438
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.23 E-value=29 Score=24.38 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHH
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVN 819 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~ 819 (901)
+.++-|+++||+++++.+.++.+ +. +++.-++||.+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~----~~---n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC----NW---DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH----TS---CHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh----Cc---CHHHHHHHHHc
Confidence 56778888999998888777664 11 45555666654
No 439
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.92 E-value=40 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRV 798 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~ 798 (901)
...+++-|+++||+++++.+.+..
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456788899999999999876543
No 440
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=31.42 E-value=47 Score=26.32 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=9.8
Q ss_pred HHHHHhhhchhHHHHHH
Q 045707 666 LFLFEIKMKVDEIGKIL 682 (901)
Q Consensus 666 ~fL~~~g~~~~~i~~~l 682 (901)
+.|+++|+...+|.+++
T Consensus 42 ~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCchhhHHHHH
Confidence 45666666655555554
No 441
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=30.22 E-value=93 Score=22.95 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcC
Q 045707 588 MMLRFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFG 636 (901)
Q Consensus 588 ~~~~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG 636 (901)
.+...|+-|.++||+.+++.+.+... ++++.-...+|+++.
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLlef~ 50 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILREFA 50 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHhc
Confidence 33455666666777776666655432 334444455555443
No 442
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=29.99 E-value=5.2 Score=33.46 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHHHHHhcc-CchhHHHHHHHhhhcCCCCCCchhhhhcCCCCC
Q 045707 424 HFVEKLIERFE-NQLDVQRLIARFLRYHPINEFEPFFESLGLKPC 467 (901)
Q Consensus 424 ~~~~~l~~~~~-~~~~~~~~~~r~l~~~~i~~~~~f~es~G~~~~ 467 (901)
+|-.+|++-.- +-...-..++-|+.-.-|.+||.|+|++|++..
T Consensus 52 ~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~~FesFle~igireg 96 (98)
T 4fqn_A 52 EFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIGVKDG 96 (98)
T ss_dssp HHHHHHHHHHCGGGGGGGGGGGGGSCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHhchHHHHHHhhccCCCChhhHHHHHHHHHHcCcccC
Confidence 46666666443 233333444555555567899999999999764
No 443
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=29.74 E-value=53 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhc
Q 045707 776 QERFDCLVNAGLDRKDVCEMIRVS 799 (901)
Q Consensus 776 ~~r~~~L~~~G~s~~~v~~mi~~~ 799 (901)
.+.++-|+++||+++++...++.+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456778888899988887766554
No 444
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=27.69 E-value=48 Score=26.25 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=31.3
Q ss_pred HHHHhhhccCcccCh-HHHHHHHHHHhcccHH-HHHHHHHHHHcCCCHHHHHHHHh
Q 045707 744 LRTKFLLDVGYVENS-NEMAKALKHFRGRGAE-LQERFDCLVNAGLDRKDVCEMIR 797 (901)
Q Consensus 744 ~k~~~L~~lG~~~~~-~~~~~a~~~~~~~~~~-l~~r~~~L~~~G~s~~~v~~mi~ 797 (901)
.+++|+++.|++.+. .....++..=+-..+- ..-.-+.|+++|+...||.++.+
T Consensus 4 dWf~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk 59 (72)
T 3idw_A 4 DWFEFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMK 59 (72)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHH
Confidence 367888888887665 4443333331111111 11133567799999988887654
No 445
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=27.26 E-value=1e+02 Score=22.68 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCC-ChhHHhhHhhcCCCeEeeCCCchHHHHHHHHHhcCCC
Q 045707 587 SMMLRFLRLFRNLGC-SDEQLGGLIRQHPGLLFEGSGSIALTMIGLLLKFGST 638 (901)
Q Consensus 587 ~~~~~~l~fL~~~G~-s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~~lG~s 638 (901)
.+....|+-|.++|| +.+...+++... ..++...++||.+-+.|
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~~s 53 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcCCC
No 446
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.05 E-value=2.6e+02 Score=27.33 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCChhHHhhHhhc
Q 045707 587 SMMLRFLRLFRNLGCSDEQLGGLIRQ 612 (901)
Q Consensus 587 ~~~~~~l~fL~~~G~s~~~i~~li~~ 612 (901)
.....+++||..-||+.+.|..++..
T Consensus 180 ~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 180 RREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 33445677888888888888777754
No 447
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.83 E-value=42 Score=26.83 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNY 820 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~ 820 (901)
.+++++-|+++||+++++...++++= .+++.-++||.+.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 56778889999999999998888641 2677788888873
No 448
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.73 E-value=54 Score=25.34 Aligned_cols=38 Identities=5% Similarity=0.253 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHh
Q 045707 776 QERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNY 820 (901)
Q Consensus 776 ~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~ 820 (901)
.+.++-|+++||+++++...++.+= .+++.-++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~-------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHC
Confidence 3567888999999999988777652 2577888999874
No 449
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=24.73 E-value=1.1e+02 Score=27.03 Aligned_cols=35 Identities=9% Similarity=0.182 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH
Q 045707 591 RFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL 633 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~ 633 (901)
..|+-|.++||+..+..+.+... ..++...++||.
T Consensus 80 ~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~e~L~ 114 (126)
T 2lbc_A 80 EIVAIITSMGFQRNQAIQALRAT--------NNNLERALDWIF 114 (126)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 45667777788877777777643 235666677775
No 450
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.67 E-value=1.4e+02 Score=27.55 Aligned_cols=61 Identities=13% Similarity=-0.041 Sum_probs=30.6
Q ss_pred cChhHHHHHHHHHHHcCCC-hhhhhhhhhcCceeeecCCchhHHHHHHHHHhcCCcchhhhhhhcc
Q 045707 516 FDVGVFQSKLHAYEMLGLS-QSFISKVIVCSPYLLIGDVNTEFVEVLQILKSMEIESCWIEEHLLE 580 (901)
Q Consensus 516 ~~~~~l~~~l~~L~~lG~~-~~~i~~~v~~~P~lL~~~~~~~l~~~v~~L~~lGv~~~~l~~~l~~ 580 (901)
++.+.+...|+.|++.|+= ....+....+.=.--..+ -..+..-|..=||+.+.|...|.+
T Consensus 44 ~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G----~~~I~~eL~~KGI~~~~i~~al~~ 105 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYG----PARIRQELNQKGISREATEKAMRE 105 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4666777777777777653 333333322211000011 123445566667777766666543
No 451
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.64 E-value=1.1e+02 Score=26.11 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHhcccHHHHHHHHHHHHc-CCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHh
Q 045707 767 HFRGRGAELQERFDCLVNA-GLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNY 820 (901)
Q Consensus 767 ~~~~~~~~l~~r~~~L~~~-G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~ 820 (901)
...+...+++++|+.|+++ |++++++..++..+=- .|..-+++|.+.
T Consensus 31 i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lleg 78 (104)
T 1wj7_A 31 ISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLEG 78 (104)
T ss_dssp HHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHTC
T ss_pred HhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHhC
Confidence 3334444589999999977 9999999987655421 556667777764
No 452
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=23.16 E-value=2.1e+02 Score=27.04 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCChhHHhhHhh
Q 045707 591 RFLRLFRNLGCSDEQLGGLIR 611 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~ 611 (901)
.+++||..-||+.+.|..++.
T Consensus 141 K~~~~L~rrGF~~~~I~~vl~ 161 (177)
T 3e3v_A 141 KIKQSLLTKGFSYDIIDTIIQ 161 (177)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHH
Confidence 345566666666666666654
No 453
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.37 E-value=1e+02 Score=23.20 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCccccccCCcccccccchhHHHHHHHHHHHHcCCC
Q 045707 787 LDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLSFLVSFPSYFNYTEERIKLRFLMYNWLKDEGWI 858 (901)
Q Consensus 787 ~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~~i~~~P~~L~ysleri~pR~~~~~~L~~~g~~ 858 (901)
++++++...|+..--+|. ++++.++.|.+.+++ +.+|+.|.++|++
T Consensus 10 ~~e~~lL~yIr~sGGild---------I~~~a~kygV~kdeV-----------------~~~LrrLe~KGLI 55 (59)
T 2xvc_A 10 ITERELLDYIVNNGGFLD---------IEHFSKVYGVEKQEV-----------------VKLLEALKNKGLI 55 (59)
T ss_dssp CCHHHHHHHHHHTTSEEE---------HHHHHHHHCCCHHHH-----------------HHHHHHHHHTTSE
T ss_pred ccHHHHHHHHHHcCCEEe---------HHHHHHHhCCCHHHH-----------------HHHHHHHHHCCCe
Confidence 456777777777777775 456777778887775 3567778888885
No 454
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.31 E-value=4.8e+02 Score=24.36 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhh
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRV 798 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~ 798 (901)
-++-+.||..-||+.+.|..++..
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345566889999999999887764
No 455
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=22.23 E-value=20 Score=21.66 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhcCCcCc
Q 045707 395 EAQAAMLEYLHLTRNLPF 412 (901)
Q Consensus 395 ~a~~~~~~~l~~~~~~~~ 412 (901)
--|..++||-|++|-|-|
T Consensus 4 rkQTs~TDFYhsKRRlvf 21 (26)
T 2zvv_Y 4 RRQTSMTDFYHSKRRLIF 21 (26)
T ss_pred ccccchhHHHhhhceEEE
Confidence 347889999999987654
No 456
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.79 E-value=91 Score=24.89 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCChhHHhhHhhcCCCeEeeCCCchHHHHHHHHH
Q 045707 591 RFLRLFRNLGCSDEQLGGLIRQHPGLLFEGSGSIALTMIGLLL 633 (901)
Q Consensus 591 ~~l~fL~~~G~s~~~i~~li~~~P~lL~~~~~~~l~p~~~fl~ 633 (901)
..|+-|.++||+.+++.+.++++ ..++...++||.
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll 65 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 45677777777777777777653 335666777776
No 457
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=21.46 E-value=55 Score=29.64 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCcCcCChhhhhcCC--hHHHHHHHHhcc-CchhHHHHHHHhhhcCCCCC--CchhhhhcCCCCCCCCCC
Q 045707 398 AAMLEYLHLTRNLPFMDAEHMSKNS--PHFVEKLIERFE-NQLDVQRLIARFLRYHPINE--FEPFFESLGLKPCEYSPF 472 (901)
Q Consensus 398 ~~~~~~l~~~~~~~~~~a~~~~~~s--~~~~~~l~~~~~-~~~~~~~~~~r~l~~~~i~~--~~~f~es~G~~~~~~~~~ 472 (901)
..|.|-|..+.-|+-+|+|.+..+- +.=++.||+-|. ..+....-+-++|.-.+=++ +.|||++||+.|++...-
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~~~~T~~dKaRrLLDlV~sKGe~a~e~Ll~~Lqql~day~dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSGGGHHHHHHTTCC-------
T ss_pred HHHHHHHHHcCCCCHHHHHHHhccCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHccccccchhHHHHHhCCCcHHHhcc
Confidence 4789999988899999999886642 234677888886 46666666666666554444 568999999999988754
No 458
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.30 E-value=77 Score=25.27 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhc
Q 045707 776 QERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYL 821 (901)
Q Consensus 776 ~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~m 821 (901)
..+++-|+++||+++++.+.++.+= .+++.-++||.+..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~-------~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHhCC
Confidence 3677889999999999988877643 26778888888743
No 459
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.04 E-value=81 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.363 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcC
Q 045707 775 LQERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLG 822 (901)
Q Consensus 775 l~~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg 822 (901)
-...++-|+++||+++++.+.++.+- . +++.-++||.+.+.
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~----~---nve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATN----N---SLERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTT----S---CSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC----C---CHHHHHHHHHhCCC
Confidence 34678889999999999999888762 1 47888899988543
No 460
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=20.40 E-value=1.7e+02 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhcCCCcc
Q 045707 778 RFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYLGYPLS 826 (901)
Q Consensus 778 r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~mg~~~~ 826 (901)
-++-|.+.||+.++|.+++.-. .+-.-++++.+.+|.+++
T Consensus 145 ~~~~l~~~G~s~~ei~el~~~i---------a~~~~~nr~~~~~~~~~d 184 (197)
T 2prr_A 145 DFEALREHGFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPN 184 (197)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCC
Confidence 3455667788888887765422 223334555566666655
No 461
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.35 E-value=95 Score=24.00 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCccccCHHHHHHHHHHHHHhc
Q 045707 777 ERFDCLVNAGLDRKDVCEMIRVSPQILNMKKDVIKSKIDFLVNYL 821 (901)
Q Consensus 777 ~r~~~L~~~G~s~~~v~~mi~~~P~iL~~s~e~l~~k~~fL~~~m 821 (901)
..++-|+++||+++++.+.++.+-- .+++.-++||.+.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSHS 59 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhCC
Confidence 3456677888888877776665321 25667777777643
No 462
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=20.12 E-value=64 Score=34.57 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=17.8
Q ss_pred hHHHHHHcCCchhHHhHHHHhCchHHH
Q 045707 697 TNTILAYLNVGKKRLCEYIQENPLELK 723 (901)
Q Consensus 697 ~~~~l~~lg~~~~~l~~ii~~~P~~l~ 723 (901)
-+.-|+.||++...+..| +.-|.-+.
T Consensus 548 pv~elrelg~sd~~ia~i-kgip~~~~ 573 (685)
T 4gfj_A 548 PVEELRELGFSDDEIAEI-KGIPKKLR 573 (685)
T ss_dssp CHHHHHTTSCCHHHHHHH-HTCCHHHH
T ss_pred cHHHHHHcCCchhhHHHh-cCCcHHHH
Confidence 356678888888887774 55666544
Done!