BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045708
         (1196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EHO|D Chain D, Crystal Structure Of Human Gins Complex
 pdb|2EHO|H Chain H, Crystal Structure Of Human Gins Complex
 pdb|2EHO|L Chain L, Crystal Structure Of Human Gins Complex
          Length = 216

 Score = 33.5 bits (75), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 802 DVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSE 861
           + + P L   +    A +E  +AVP G +L LPL +   +GL   K R+LS+E+P    E
Sbjct: 37  ETAXPRLGAFFLERSAGAETDNAVPQGSKLELPLWLA--KGLFDNKRRILSVELPKIYQE 94


>pdb|2Q9Q|D Chain D, The Crystal Structure Of Full Length Human Gins Complex
 pdb|2Q9Q|H Chain H, The Crystal Structure Of Full Length Human Gins Complex
          Length = 220

 Score = 33.1 bits (74), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 802 DVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSE 861
           + + P L   +    A +E  +AVP G +L LPL +   +GL   K R+LS+E+P    E
Sbjct: 41  ETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLA--KGLFDNKRRILSVELPKIYQE 98


>pdb|2E9X|C Chain C, The Crystal Structure Of Human Gins Core Complex
 pdb|2E9X|G Chain G, The Crystal Structure Of Human Gins Core Complex
          Length = 219

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 802 DVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSE 861
           + + P L   +    A +E  +AVP G +L LPL +   +GL   K R+LS+E+P    E
Sbjct: 40  ETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLA--KGLFDNKRRILSVELPKIYQE 97


>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysylsulfamoyl Adenosine
 pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysylsulfamoyl Adenosine
 pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysylsulfamoyl Adenosine
 pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysylsulfamoyl Adenosine
 pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysine Hydroxamate-Amp
 pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysine Hydroxamate-Amp
 pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysine Hydroxamate-Amp
 pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With L-Lysine Hydroxamate-Amp
 pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With Diadenosine Tetraphosphate (Ap4a)
 pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With Diadenosine Tetraphosphate (Ap4a)
 pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With Diadenosine Tetraphosphate (Ap4a)
 pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
           Complexed With Diadenosine Tetraphosphate (Ap4a)
          Length = 493

 Score = 30.4 bits (67), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 905 ELSNPTDVVFEISVTVKLENSGNEDSHSADHD---ATEYGYPKT 945
           EL++P D        +K    GN+++H  D D   A EYG P T
Sbjct: 418 ELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPT 461


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,105,370
Number of Sequences: 62578
Number of extensions: 1300143
Number of successful extensions: 3107
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3104
Number of HSP's gapped (non-prelim): 5
length of query: 1196
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1086
effective length of database: 8,089,757
effective search space: 8785476102
effective search space used: 8785476102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)