BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045708
(1196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32PH0|TPPC9_BOVIN Trafficking protein particle complex subunit 9 OS=Bos taurus
GN=TRAPPC9 PE=2 SV=1
Length = 1138
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 185/790 (23%), Positives = 323/790 (40%), Gaps = 159/790 (20%)
Query: 78 PP--SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALV-KRCFAFSPC 134
PP S W DFQ++RK++ +I I C S+ D + E+F+ + Y S L R F F
Sbjct: 62 PPENSEWGDFQTHRKVVGLITITDCFSAKDWPQIFEKFHVQKEIYGSTLYDSRLFVFG-- 119
Query: 135 DSHLE-EGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFE-KWVLRA-ESAGT- 190
L+ E ++ + F P+ + ++ ++D SL + E K + RA + +G
Sbjct: 120 ---LQGEIAEQPRTDVAFYPSYEDCAT--VEKRIEDFVESLFIVLESKRLDRATDKSGDK 174
Query: 191 --ILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELAR 247
+L P + + + + + KKR R +K +GD CL AG D+ HY ++EL R
Sbjct: 175 IPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLR 234
Query: 248 LTADYFWYAGALEGSVCALLV--------------------------------------- 268
D+ W ALEG A ++
Sbjct: 235 SVNDFLWLGAALEGLCSASVIYHYPGGTGGKAGARRFPGSALPAEAANRHRPGALTTNGI 294
Query: 269 -----DRMGQ-KDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFL 322
+G+ K+ + E++ +Y I +Y K NA + ELEA +K R L
Sbjct: 295 NADTSTEIGRAKNCLSPEDIIEKYKEAISYYSKY---KNAGVI-----ELEACVKAVRVL 346
Query: 323 CRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLY 382
++ + + E L +A + +++ Y ++ L+ + + RK+AFF R
Sbjct: 347 AIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKR------ 400
Query: 383 LQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLV----DGGKMHHQSVQ 438
+ AMQ +A + G + K L G SL D K H+
Sbjct: 401 ---------VAAMQCVAPSISE---PGWRACYKLLLETLPGYSLSLDPQDFNKGTHRG-- 446
Query: 439 SVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASA 498
W+ +QM +L E++ ++ R G+P + + LL++ ++ + + +
Sbjct: 447 ---------WAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQS 497
Query: 499 LANSAERLPSGTRCAD------------SALPFVR---LYSFP--LHPSQMDIVKRNPGR 541
L N + P + LP VR L P L P +M +
Sbjct: 498 LENYTSKCPGTMELLTLPDGLTLPPVPFTKLPIVRRVKLLDLPASLRPQKM--------K 549
Query: 542 EDWWAGSAPSGPFIYTPF---SKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDS 598
+ PFIY+P S+GE S K + WV G+ +V + + NP F+LRV++
Sbjct: 550 SSLGPSVSAKSPFIYSPIIAHSRGE-ERSKKIDFQWVQGDVCEVQLMVYNPMPFELRVEN 608
Query: 599 IYLSVHSGNFDAFPISVELPPNSSKV-ITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRD 657
+ L F++ P ++ LP S +TL G+P + G +T+ G FGV +
Sbjct: 609 MGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVSGYHTTVFGVFS------ 662
Query: 658 VDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDG-------A 710
+ LL + G+ + GS ++P + + LP ++ G +
Sbjct: 663 --DCLLDSLPGI------KTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDKISTNVS 714
Query: 711 IILYEGEIRDVWISLANAGTVPVEQAHIS---LSGKNQ--DSIISIASETLKSALPLKPG 765
+ LY GE + + + L N G P+E+ ++ L+ K + +S E + PL+PG
Sbjct: 715 VQLYNGETQQLVVRLENIGMEPLEKLEVTSKILTTKEKLYGDFLSWKLEDTLAQFPLQPG 774
Query: 766 AEVIIPVTLK 775
+++K
Sbjct: 775 KVATFTISIK 784
>sp|Q3U0M1|TPPC9_MOUSE Trafficking protein particle complex subunit 9 OS=Mus musculus
GN=Trappc9 PE=1 SV=2
Length = 1148
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 184/802 (22%), Positives = 324/802 (40%), Gaps = 172/802 (21%)
Query: 78 PP--SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCD 135
PP + W DFQ++RK++ +I I C S D E+F+ + Y S L D
Sbjct: 62 PPENNEWGDFQTHRKVVGLITITDCFSPKDWPQTFEKFHVQKEIYGSTLY---------D 112
Query: 136 SHLEEGGKKGD-------NLIMFPPADQQTQEFHLQTMMQDIAASLLMEFE-KWVLRA-E 186
S L G +GD ++ +P D ++ ++D SL + E K + RA +
Sbjct: 113 SRLFVFGLQGDVAEQPRPDVAFYPNYDDCDS---VEKRIEDFIESLFIVLESKRLDRATD 169
Query: 187 SAGT---ILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTA 242
+G +L P + + + + + KKR R +K +GD CL AG DA HY +
Sbjct: 170 KSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDALVHYHMS 229
Query: 243 LELARLTADYFWYAGALEGSVCALLV----------------------------DRMGQK 274
+EL R D+ W ALEG A ++ R G +
Sbjct: 230 VELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKTGARRLQGSSLPSEAANRHRPGAQ 289
Query: 275 DAVLE--------------------------EEVKFRYNSVILHYRKSFIPDNAQRVSPL 308
+ +++ E++ +Y I +Y K NA +
Sbjct: 290 EVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKY---KNAGVI--- 343
Query: 309 SFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQ 368
ELEA +K R L ++ + E L +A + +++ Y ++ L+ + +
Sbjct: 344 --ELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFH 401
Query: 369 RKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLV- 427
RK+AFF R + AMQ +A + G + K L G SL
Sbjct: 402 RKSAFFKR---------------VAAMQCVAPSIAE---PGWRACYKLLLETLPGYSLSL 443
Query: 428 ---DGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYY 484
D K H+ W+ +QM +L E++ ++ R G+P + + LL++
Sbjct: 444 DPKDFSKGTHRG-----------WAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTML 492
Query: 485 PLITPVGQNGLASALANSAER---------LPSGTRCAD---SALPFVRLYSFPLHPSQM 532
++ + + +L N + LP G + LP VR P+ +
Sbjct: 493 DFLSDQEKKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSL 552
Query: 533 DIVKRNPGREDWWAGSAPS--GPFIYTPF---SKGEPNDSSKQELIWVVGEPVQVLVELA 587
P + G + S PFIY+P ++GE + K + WV G+ +V + +
Sbjct: 553 -----RPHKVKSLLGQSMSTKSPFIYSPIIAHNRGEERNK-KIDFQWVQGDVCEVQLMVY 606
Query: 588 NPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKV-ITLSGIPTSVGPVTIPGCTVHC 646
NP F+LRV+++ L F++ P ++ LP S +TL G+P + G +T+ G
Sbjct: 607 NPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGMITVNGYHTTV 666
Query: 647 FGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNV-- 704
FGV ++ + ++ L G + V+ ++P + + LP ++
Sbjct: 667 FGVFSDCLLDNLPGLKTGGSTVEVIP--------------ALPRLQISTSLPRSARSLQP 712
Query: 705 -----VGGDGAIILYEGEIRDVWISLANAGTVPVEQAHIS---LSGKNQ--DSIISIASE 754
+ + ++ LY GE + + ++L N G P+EQ ++ L+ K + +S E
Sbjct: 713 SAGDEIATNVSVQLYNGETQQLAVTLENIGLEPLEQLEVTSKLLTTKEKLYGDFLSWKLE 772
Query: 755 TLKSALPLKPGAEVIIPVTLKA 776
+ PL+PG + +KA
Sbjct: 773 ETLAQFPLQPGKVATFTINIKA 794
>sp|Q96Q05|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens
GN=TRAPPC9 PE=1 SV=2
Length = 1148
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 187/799 (23%), Positives = 329/799 (41%), Gaps = 168/799 (21%)
Query: 78 PP--SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALV-KRCFAFSPC 134
PP + W DFQ++RK++ +I I C S+ D E+F+ + Y S L R F F
Sbjct: 62 PPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQ 121
Query: 135 DSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFE-KWVLRA-ESAGT-- 190
+E+ + D + F P + Q ++ ++D SL + E K + RA + +G
Sbjct: 122 GEIVEQ--PRTD--VAFYPNYEDCQT--VEKRIEDFIESLFIVLESKRLDRATDKSGDKI 175
Query: 191 -ILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARL 248
+L P + + + + + KKR R +K +GD CL AG D+ HY ++EL R
Sbjct: 176 PLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRS 235
Query: 249 TADYFWYAGALEGSVCALLV----------------------------DRMGQKDAVLE- 279
D+ W ALEG A ++ R G ++ +++
Sbjct: 236 VNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDP 295
Query: 280 -------------------------EEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEA 314
E++ +Y I +Y K NA + ELEA
Sbjct: 296 GALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKY---KNAGVI-----ELEA 347
Query: 315 TLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFF 374
+K R L ++ + + E L +A + +++ Y ++ L+ + + RK+AFF
Sbjct: 348 CIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFF 407
Query: 375 SRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLV----DGG 430
R + AMQ +A + G + K L G SL D
Sbjct: 408 KR---------------VAAMQCVAPSIAE---PGWRACYKLLLETLPGYSLSLDPKDFS 449
Query: 431 KMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPV 490
+ H+ W+ +QM +L E++ ++ R G+P + + LL++ ++
Sbjct: 450 RGTHRG-----------WAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQ 498
Query: 491 GQNGLASALANSAER---------LPSGTRCAD---SALPFVR---LYSFP--LHPSQMD 533
+ +A +L N + LP G + LP VR L + P L P +M
Sbjct: 499 EKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMK 558
Query: 534 -IVKRNPGREDWWAGSAPSGPFIYTPF---SKGEPNDSSKQELIWVVGEPVQVLVELANP 589
++ +N + PFIY+P ++GE + K + WV G+ +V + + NP
Sbjct: 559 SLLGQN---------VSTKSPFIYSPIIAHNRGEERNK-KIDFQWVQGDVCEVQLMVYNP 608
Query: 590 CGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKV-ITLSGIPTSVGPVTIPGCTVHCFG 648
F+LRV+++ L F++ P ++ LP S +TL G+P + G +T+ G FG
Sbjct: 609 MPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFG 668
Query: 649 VITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGD 708
V ++ + +DNL + GS ++P + + LP ++
Sbjct: 669 VFSDCL---LDNL-----------PGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSS 714
Query: 709 G-------AIILYEGEIRDVWISLANAGTVPVEQAHIS---LSGKNQ--DSIISIASETL 756
G ++ LY GE + + I L N G P+E+ ++ L+ K + +S E
Sbjct: 715 GDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEET 774
Query: 757 KSALPLKPGAEVIIPVTLK 775
+ PL+PG + +K
Sbjct: 775 LAQFPLQPGKVATFTINIK 793
>sp|Q6PA97|TPPC9_XENLA Trafficking protein particle complex subunit 9 OS=Xenopus laevis
GN=trappc9 PE=2 SV=1
Length = 1151
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 193/813 (23%), Positives = 315/813 (38%), Gaps = 153/813 (18%)
Query: 54 QKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQF 113
Q +P Q S R ++ + + W DFQ++RK++ +I I C S+ DL I +F
Sbjct: 43 QVNPMNTQRLLSIRYRHQYPVDN---NEWGDFQTHRKVVGLICIAECTSARDLPHTILKF 99
Query: 114 NAACKGYNSALV-KRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAA 172
+ Y+S L R F F E + ++ +P D + ++D
Sbjct: 100 EQQKEAYSSTLYDSRLFLFG---FQGEMADQSRIDVASYPSYDNCAA---VDKRVEDFIQ 153
Query: 173 SLLMEFEKWVL--RAESAGT---ILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYC 226
SL + E L +E +G +L P + + + + + KKR R +K +GD C
Sbjct: 154 SLFIVLESKRLDRTSEKSGEKIPLLYVPYEKKDFVGLDPDSRHYKKRCQGRMRKHVGDLC 213
Query: 227 LLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRM-----GQKDAVLEEE 281
L AG DA HY A+EL R D+ W ALEG A ++ G+ L +
Sbjct: 214 LQAGMLQDALVHYHMAVELLRAVNDFVWLGAALEGLCSASVIHHYPGGTGGKAGTQLRQS 273
Query: 282 VKFRYNSVILHY-----------------------------RKSFIPDN--AQRVSPLSF 310
V +S H + PD+ + +S+
Sbjct: 274 VTMSADSFKRHRPGAQEVLIDPGALSTNGINMDASTEIGRAKNCLSPDDIIEKYKEAISY 333
Query: 311 ----------ELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIAR 360
ELEA +K R L ++ + D E L + + +++ Y ++
Sbjct: 334 YGKSKAAGVIELEACVKAVRVLAIQKKSMDASEFLQNVVYINLRQLSEEEKIQRYSVLSE 393
Query: 361 LFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSN 420
L+ + + RK+AFF R + AMQ +A + G + K L
Sbjct: 394 LYELIGFHRKSAFFKR---------------VAAMQCVAPSIVE---PGWKACYKLLLET 435
Query: 421 ETGSSLV----DGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAA 476
G SL D K H+ W+ +QM +L E++ ++ R G+P A
Sbjct: 436 LPGYSLSLDPKDFSKGTHKG-----------WAAVQMRLLHELVYASRRMGNPALAVRHL 484
Query: 477 ARLLRSYYPLITPVGQNGLASALANSAERLPSG----TRCADSALPFVRLYSFPLHPS-- 530
+ LL++ ++ + +A +L + + P T LP V P+ S
Sbjct: 485 SFLLQTMLDFLSDQEKKDVAQSLESYTSKCPGTMDPITLPEGLVLPPVPFTKLPIVRSVK 544
Query: 531 --QMDIVKRNPGREDWWAGSAPS--GPFIYTPF--SKGEPNDSSKQELIWVVGEPVQVLV 584
+ ++ R P + G S PFIY+P + K + WV G+ +V +
Sbjct: 545 LLDLPVILR-PQKVKNLLGQKLSTKSPFIYSPIIAHNRSEEKNKKIDFQWVQGDVCEVQL 603
Query: 585 ELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKV-ITLSGIPTSVGPVTIPGCT 643
+ NP F+LRV+++ L F+ P ++ LP S +TL G+P + G +T+ G
Sbjct: 604 MVYNPMPFELRVETMGLLTSGVEFEYLPAALSLPAESGLYPVTLVGVPRTTGQITVNGYH 663
Query: 644 VHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLL--- 700
GV ++ + +DNL LKN + V+P LP L
Sbjct: 664 TSVCGVYSDCL---LDNL-------------------PGLKNNGC-TVEVIPALPRLQIS 700
Query: 701 --------VSNVVGGDG-----AIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDS 747
V GD ++ LY GE + V I L N G P+E+ ++ N
Sbjct: 701 TSLPRSAHVLQPSSGDEVSTHVSVQLYNGETQKVIIKLENIGAEPLEKLEVTSKTVNTKE 760
Query: 748 -----IISIASETLKSALPLKPGAEVIIPVTLK 775
+S E S PLKPG + V +K
Sbjct: 761 KFYGDFLSWDLEPTLSQFPLKPGNTATLTVYIK 793
>sp|Q9VIL0|BRU_DROME Protein brunelleschi OS=Drosophila melanogaster GN=bru PE=1 SV=2
Length = 1320
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 135/558 (24%), Positives = 234/558 (41%), Gaps = 92/558 (16%)
Query: 292 HYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDR 351
+YRK+ I + R + + E EA LK +R + DV L + S+ +A +R
Sbjct: 424 YYRKAIINYSKYRHAA-TIETEAALKASRICIEQNRPLDVAMFLQNILYINLSMSEA-ER 481
Query: 352 LILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRA 411
+ + I L+ + YQRKAAFF R A ++QQ +++ ++YR+
Sbjct: 482 VKRFEVITDLYQQIGYQRKAAFFQRLAALKHVQQGSQAPDW---------NQSYRLM--- 529
Query: 412 SISKSSLSNETGSSL-VDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPL 470
L + TG L +D ++ + + W LQ+ +++ ++ +A R G
Sbjct: 530 ------LGSFTGYRLCLDPLEVIENA---------AGWPALQIDLVQTLITAARRLGHSA 574
Query: 471 AAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPS 530
A LL++ + ++P Q+ +A L N + +C S +P V + P+
Sbjct: 575 LATRHMTFLLQTQWDNMSPTEQSEMAVQLQNLS------AQCEGSPVPLVLENGTVIPPA 628
Query: 531 QM-------DI-VKRNPGR---EDWWAGSAPSGPFIYTPFSKGEPNDSSKQE------LI 573
+ D+ VK P + A SGPF++TP + K++
Sbjct: 629 NLTDLPYCIDLQVKDLPAHLRPQRIKVAKADSGPFLFTPIHFNSVDRRDKKKDKNKIAFQ 688
Query: 574 WVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTS 633
WV + +V V L NP F+L V + L + F++ P ++ L P+ + L G P
Sbjct: 689 WVQNDLSEVTVRLRNPLPFELPVTDMRLLTNGVVFESLPQTLVLQPHVPTYVALHGTPIE 748
Query: 634 VGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNV--SVPNI 691
G + + G + H GV + N L +G R + +V ++P I
Sbjct: 749 TGQLDLQGYSTHTLGVKS--------NCRLKHMRG-------RSFPPNYVVDVIPALPRI 793
Query: 692 SVVPPLPLLVS-------NVVGGDGAIILYEGEIRDVWISLAN-AGTVPVEQAHISLSG- 742
SV LP + ++V ++ LY GE I++ N + T+P+E S++
Sbjct: 794 SVKTSLPQTATFSNMNSADIVVTSASLTLYNGESSSCTITITNESATLPLEHLEFSINSN 853
Query: 743 ---KNQDSIISIASETLKSALPLKPGA--EVIIPVTLKAWQHGPVDPETVAGKIASGSIG 797
+ Q I I E +K+ LP+ P E+I+ V +A P P ++ A G G
Sbjct: 854 VEQELQQKIFRIDEEAIKAHLPVPPQGTIEIIVDVFAEADFVCPQPPASLHSAAAPGDYG 913
Query: 798 RHVKDVSSPSLLIHYAGL 815
S L HY+ +
Sbjct: 914 --------ASSLTHYSSV 923
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 82 WEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVK-RCFAFSPCDSHLEE 140
W DFQ++R++L ++ I S +L+ + Q + Y S L + R F P + LE
Sbjct: 90 WGDFQTHRRLLGLVTIGKFDSQIELNELCRQHESLKVRYGSTLYESRAIFFGPDEQPLET 149
Query: 141 ----------GGKKGDNLIMFPPADQQTQEFH---------LQTMMQDIAASLLMEFEKW 181
GG++ + P++ + Q F L++ + D A++L W
Sbjct: 150 IGEVLGPPAAGGRRLQDEFT-TPSNFKAQAFFYREQDSCADLESRIGDFASALF-----W 203
Query: 182 VLRA-------ESAG--TILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYCLLAGS 231
VL + E A ++L P + + + + E +KR + R K + D L AG
Sbjct: 204 VLESRRLERSREKADKVSLLLAPFEKRDFVGLDMESRNNRKRCVGRVMKNLADLSLQAGL 263
Query: 232 PVDANAHYSTALELARLTADYFWYAGALEGSVCA 265
DA + Y A E R D W GA E +CA
Sbjct: 264 VDDALSLYHNANETLRSVGDSLW-VGATEEGLCA 296
>sp|O14251|TR120_SCHPO Transport protein particle subunit trs120 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs120 PE=3 SV=1
Length = 1210
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 121/307 (39%), Gaps = 40/307 (13%)
Query: 1 MEPDV-SMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFT 59
ME D S S ++ VLP G V Y +L R I LS + + S F
Sbjct: 1 MEFDFFSFVAPSRVQSLVLPFGRVRRKSFSSYLQLLRRVSHIQLSDVPVATATRKSSSFN 60
Query: 60 NQPWDSGSLRFKFVLG-GAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACK 118
+ G L + F+ + E+F+ R++ +IGI +++ + + +
Sbjct: 61 PLAFPLGRLVYNFLTSLDDQQALLEEFEYFRRVFVLIGIVDGSEEQEVEQLCSTLDVWRR 120
Query: 119 GYNSALVKRCFAFS-PCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLME 177
ALV +C F+ P D +E N+I+ P +D +++++ DI A LL
Sbjct: 121 RIPHALVAKCIVFNCPED---KENIFNAPNIIIGPRSDFSINSV-MRSILCDITAELLEG 176
Query: 178 FEKWVLRAESAGTIL----------------------------KTPLDSQASLSSEEVIK 209
F + IL + L S++S V
Sbjct: 177 FSSLEFSIHARSVILSPITDMPHLAPLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNS 236
Query: 210 AKKRRLA----RAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALE-GSVC 264
+R + R + G LLAG +A H+STA+ L++ T D+ W +LE +VC
Sbjct: 237 VTERSKSLSKGRIENQFGQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVC 296
Query: 265 ALLVDRM 271
+++ +
Sbjct: 297 LVIMAHL 303
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 30/214 (14%)
Query: 548 SAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGN 607
S GPFIY PF++ + + SK L VV E V + NP + V ++L +
Sbjct: 636 SIEKGPFIYNPFNRRQDQNQSKSVL--VVDEQVAFSIYFRNPLSVSVEVQDVHLETKGVS 693
Query: 608 FDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGV--ITEHIF---------- 655
+ + P S + TL+ PT G + I GC V FG I ++++
Sbjct: 694 AKCSHSTFTMRPLSIERTTLTVTPTETGELHIVGCRVKVFGCEPILQYVYEAKDKHKSLH 753
Query: 656 ------RDVDNLL--LGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGG 707
+DV+ L L L PF+ K K+ I+ P L L N+ G
Sbjct: 754 VYLEKSKDVNAELRSLDTIDHLWTYFPFK--KDLKTKSFDCIVIASQPKLSLAFQNLTSG 811
Query: 708 DGAIILYE-GEIRDVWISLANAGTVPVEQAHISL 740
YE GE+ V++ T VE +HIS+
Sbjct: 812 KFNFAEYETGEL--VYVI---ENTSFVEASHISV 840
>sp|Q04183|TR120_YEAST Trafficking protein particle complex II-specific subunit 120
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRS120 PE=1 SV=1
Length = 1289
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 117/323 (36%), Gaps = 83/323 (25%)
Query: 11 SMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSP-FTNQPWDSGSLR 69
S IR V+PIG + L + I LS ++ SP FT Q + G L
Sbjct: 14 SKIRTLVIPIGHWTRKEFNNAVQKLSEFNEIHLSDVTPI-----DSPIFTPQGFPHGKLF 68
Query: 70 FKFVL---GGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVK 126
F F+ A DF+ RK +IG+ + S P + N + Y + +
Sbjct: 69 FDFLTIDHDDALELFLYDFEPFRKTFVIIGLVNDYSDP-----LTNLNFMKEKYPTLISP 123
Query: 127 R-CFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKW---- 181
+A S LE+ +N+ P Q+ +++T+M DIA + L +
Sbjct: 124 NLVYASSTPTKELEQTIDTMENVFASSPDMQK----NIETIMCDIARNFLTALNSYYSSY 179
Query: 182 ---VLRAESA---GTILKTPLDSQ--------------------------------ASLS 203
LR+ A +LKT L Q LS
Sbjct: 180 KHVTLRSPGAIGGNAVLKTTLIRQNSYTSSSSSTPMSAVQSSVSSSSKAGSVTTASKRLS 239
Query: 204 SEEVI---------------------KAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTA 242
S E+ +++++ L R K +G++ LLAG VDA + A
Sbjct: 240 SFEMTTNSLKRSASLKLATTLSTSENRSQQKSLGRQMKILGNFQLLAGRYVDALNSFVDA 299
Query: 243 LELARLTADYFWYAGALEG-SVC 264
+ DY W AL+G S+C
Sbjct: 300 ITTLYKVRDYLWLGSALDGISIC 322
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii
serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC
9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 32/118 (27%)
Query: 974 KDMQSNGTSGSRS------SSFSEKNTKAELNASIRNLISRIKVRWQSGRNSSGELNIKD 1027
KD+++ G R+ SF +++ E+ A + +++ + RW+ + SGEL
Sbjct: 599 KDLRAKGEKEDRAVLLESWKSFEQEHGDEEMLAKVEDMLPTTRKRWRKAEDGSGEL---- 654
Query: 1028 AVQAALQSSVMDVLLPD------PLTFGF---------RLVKKGSEQDAELDLPNDSS 1070
D++ PD P +F F + +G E DLP+DS
Sbjct: 655 -------EEYWDLVFPDDEKEANPTSFKFFQAAQAWAQQRAGQGEEGGLSYDLPSDSE 705
>sp|A8F4K1|SYK_THELT Lysine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 /
DSM 14385 / TMO) GN=lysS PE=3 SV=1
Length = 498
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 905 ELSNPTDVVFEISVTVKLENSGNEDSHSADHD---ATEYGYPKT 945
EL++P D + +KL ++G+E++H D D A EYG P T
Sbjct: 412 ELNDPDDQLERFKAQLKLRDAGDEEAHRMDLDFIRALEYGLPPT 455
>sp|Q3SG10|RF1_THIDA Peptide chain release factor 1 OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=prfA PE=3 SV=1
Length = 360
Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 792 ASGSIGRHVKDVSSPSLLIHY-AGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARL 850
ASG+ G+H+ S + H GL+ +D + R Q +S + ARL
Sbjct: 229 ASGAGGQHINKTDSAVRITHLPTGLVVECQDDRSQHRNRA----------QAMSVLAARL 278
Query: 851 LSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKL 887
EI A + E ++ K L+GSG+R D++
Sbjct: 279 KDREIQAQQAS--------EASTRKSLIGSGDRSDRI 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,506,544
Number of Sequences: 539616
Number of extensions: 18253736
Number of successful extensions: 41807
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41766
Number of HSP's gapped (non-prelim): 23
length of query: 1196
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1067
effective length of database: 121,958,995
effective search space: 130130247665
effective search space used: 130130247665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)