Query 045708
Match_columns 1196
No_of_seqs 194 out of 242
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08626 TRAPPC9-Trs120: Trans 100.0 7E-169 2E-173 1641.8 98.1 1034 1-1147 1-1185(1185)
2 KOG1953 Targeting complex (TRA 100.0 2E-128 5E-133 1143.1 65.8 1073 1-1179 1-1233(1235)
3 KOG1938 Protein with predicted 99.7 3.6E-17 7.8E-22 200.0 10.2 597 84-776 26-732 (960)
4 PF12739 TRAPPC-Trs85: ER-Golg 99.2 8.5E-10 1.8E-14 131.7 24.2 298 102-409 50-404 (414)
5 PF07919 Gryzun: Gryzun, putat 98.9 8.2E-06 1.8E-10 101.2 41.0 467 574-1155 23-547 (554)
6 PF14938 SNAP: Soluble NSF att 95.2 0.34 7.5E-06 55.3 14.9 147 218-382 37-185 (282)
7 KOG1953 Targeting complex (TRA 95.1 0.032 6.9E-07 70.6 6.1 122 280-409 415-545 (1235)
8 COG1470 Predicted membrane pro 94.8 1.7 3.7E-05 52.1 18.7 161 570-776 276-452 (513)
9 PF00927 Transglut_C: Transglu 93.1 0.29 6.2E-06 47.6 7.1 67 574-640 11-85 (107)
10 PF13424 TPR_12: Tetratricopep 92.5 0.52 1.1E-05 42.4 7.7 70 217-294 6-77 (78)
11 PF14874 PapD-like: Flagellar- 91.2 2.6 5.7E-05 40.3 11.3 58 712-776 15-73 (102)
12 PF10633 NPCBM_assoc: NPCBM-as 90.7 0.75 1.6E-05 42.1 6.7 58 715-776 3-60 (78)
13 PF14938 SNAP: Soluble NSF att 88.7 49 0.0011 37.8 21.0 138 231-386 30-169 (282)
14 PF12690 BsuPI: Intracellular 88.6 0.65 1.4E-05 43.4 4.5 67 1082-1157 2-82 (82)
15 PF06159 DUF974: Protein of un 87.4 18 0.00039 40.9 15.9 117 708-854 5-126 (249)
16 PF07705 CARDB: CARDB; InterP 86.8 2.5 5.3E-05 39.7 7.5 74 698-780 2-75 (101)
17 PF03896 TRAP_alpha: Transloco 86.3 8.3 0.00018 44.3 12.6 85 692-776 74-160 (285)
18 smart00769 WHy Water Stress an 84.8 3 6.4E-05 40.2 7.0 52 580-631 17-72 (100)
19 PF13176 TPR_7: Tetratricopept 83.2 1.2 2.7E-05 34.5 3.0 31 221-251 4-34 (36)
20 KOG1130 Predicted G-alpha GTPa 83.1 11 0.00024 44.8 11.7 150 214-381 193-344 (639)
21 PF12862 Apc5: Anaphase-promot 80.6 2.4 5.1E-05 40.3 4.5 45 219-263 44-88 (94)
22 PF12690 BsuPI: Intracellular 79.2 4.3 9.2E-05 38.0 5.6 58 719-776 2-70 (82)
23 PF00515 TPR_1: Tetratricopept 78.9 2 4.4E-05 32.3 2.8 25 221-245 6-30 (34)
24 PF09478 CBM49: Carbohydrate b 77.1 7.3 0.00016 36.1 6.5 56 716-772 16-77 (80)
25 PF06159 DUF974: Protein of un 76.8 1.4E+02 0.003 33.8 18.2 171 574-780 10-210 (249)
26 KOG1840 Kinesin light chain [C 75.2 13 0.00028 46.2 9.8 137 215-366 240-381 (508)
27 KOG1840 Kinesin light chain [C 72.9 48 0.001 41.3 13.8 156 214-383 197-356 (508)
28 PF07719 TPR_2: Tetratricopept 71.7 4.1 8.8E-05 30.3 2.8 26 221-246 6-31 (34)
29 PF11906 DUF3426: Protein of u 71.6 27 0.00059 35.9 9.8 68 709-776 58-136 (149)
30 PF05753 TRAP_beta: Translocon 71.1 15 0.00032 39.7 7.8 81 697-781 20-102 (181)
31 TIGR02521 type_IV_pilW type IV 69.7 53 0.0011 34.3 11.9 25 221-245 70-94 (234)
32 PF06030 DUF916: Bacterial pro 68.7 22 0.00047 35.8 8.0 67 709-776 19-103 (121)
33 PF07705 CARDB: CARDB; InterP 68.0 37 0.0008 31.6 9.2 66 573-640 14-80 (101)
34 PF13374 TPR_10: Tetratricopep 66.1 6.3 0.00014 30.5 2.9 30 220-249 6-35 (42)
35 PF10602 RPN7: 26S proteasome 64.5 87 0.0019 33.5 12.1 121 218-361 38-166 (177)
36 PF04744 Monooxygenase_B: Mono 63.9 24 0.00052 41.6 8.1 83 691-776 239-335 (381)
37 KOG3865 Arrestin [Signal trans 61.4 45 0.00098 38.5 9.4 146 610-776 110-276 (402)
38 PF07919 Gryzun: Gryzun, putat 61.0 30 0.00064 43.3 9.1 90 1072-1162 182-282 (554)
39 KOG1585 Protein required for f 60.2 96 0.0021 35.1 11.4 74 249-340 63-138 (308)
40 TIGR00990 3a0801s09 mitochondr 59.7 37 0.00081 43.1 9.8 43 217-259 332-375 (615)
41 TIGR02795 tol_pal_ybgF tol-pal 57.9 39 0.00085 31.9 7.5 92 222-341 8-105 (119)
42 PF13181 TPR_8: Tetratricopept 55.5 14 0.00031 27.4 3.2 28 220-247 5-32 (34)
43 COG3063 PilF Tfp pilus assembl 55.3 3.5E+02 0.0077 30.5 16.5 206 219-495 38-247 (250)
44 TIGR03302 OM_YfiO outer membra 54.5 2.2E+02 0.0048 30.9 13.6 144 220-380 74-231 (235)
45 PF00635 Motile_Sperm: MSP (Ma 54.0 32 0.00068 33.0 6.1 59 710-776 8-69 (109)
46 KOG2076 RNA polymerase III tra 53.7 97 0.0021 40.6 11.6 135 218-379 416-553 (895)
47 PF06280 DUF1034: Fn3-like dom 52.9 36 0.00078 33.3 6.3 61 716-776 7-80 (112)
48 PRK15359 type III secretion sy 52.9 62 0.0013 33.1 8.4 92 222-341 30-121 (144)
49 PRK11447 cellulose synthase su 52.8 1.3E+02 0.0029 41.4 13.9 20 221-240 578-597 (1157)
50 PF03168 LEA_2: Late embryogen 52.8 71 0.0015 29.8 8.2 47 583-629 1-51 (101)
51 PF13424 TPR_12: Tetratricopep 51.8 10 0.00022 33.9 2.2 34 215-248 45-78 (78)
52 PF12735 Trs65: TRAPP traffick 51.6 4.5E+02 0.0099 30.7 19.3 77 709-785 164-283 (306)
53 COG1729 Uncharacterized protei 51.5 45 0.00098 38.0 7.5 87 226-338 151-241 (262)
54 KOG1129 TPR repeat-containing 51.2 1.1E+02 0.0023 36.0 10.3 154 221-378 228-421 (478)
55 KOG1155 Anaphase-promoting com 50.9 1.2E+02 0.0026 37.1 11.1 137 231-376 379-531 (559)
56 PF10516 SHNi-TPR: SHNi-TPR; 50.3 16 0.00035 29.2 2.7 29 220-248 5-33 (38)
57 PF01345 DUF11: Domain of unkn 49.4 41 0.0009 30.4 5.7 45 694-742 20-64 (76)
58 KOG1155 Anaphase-promoting com 49.1 56 0.0012 39.8 8.0 103 214-340 430-535 (559)
59 PRK11788 tetratricopeptide rep 49.1 2.9E+02 0.0063 32.3 14.4 24 221-244 74-97 (389)
60 KOG1941 Acetylcholine receptor 48.1 2E+02 0.0043 34.3 11.9 129 328-475 138-268 (518)
61 TIGR03079 CH4_NH3mon_ox_B meth 48.1 81 0.0017 37.4 8.9 66 709-776 274-354 (399)
62 PF14874 PapD-like: Flagellar- 47.9 82 0.0018 29.9 7.8 63 573-636 15-79 (102)
63 PRK11788 tetratricopeptide rep 47.9 2.9E+02 0.0062 32.3 14.1 80 286-378 196-275 (389)
64 PF05753 TRAP_beta: Translocon 47.8 76 0.0016 34.3 8.2 75 573-649 33-115 (181)
65 TIGR02521 type_IV_pilW type IV 47.3 3.5E+02 0.0075 28.1 13.4 132 216-379 31-162 (234)
66 PF10633 NPCBM_assoc: NPCBM-as 45.3 81 0.0018 28.7 7.0 61 576-639 3-71 (78)
67 PLN03088 SGT1, suppressor of 45.1 1.4E+02 0.003 35.5 10.8 92 221-341 7-99 (356)
68 CHL00033 ycf3 photosystem I as 44.7 1.3E+02 0.0027 31.3 9.3 41 220-263 39-79 (168)
69 PF07610 DUF1573: Protein of u 44.3 53 0.0011 27.0 5.0 42 723-773 2-44 (45)
70 KOG2003 TPR repeat-containing 43.7 1.6E+02 0.0036 35.7 10.6 116 218-367 492-607 (840)
71 TIGR00990 3a0801s09 mitochondr 41.8 1.6E+02 0.0035 37.4 11.4 127 219-379 368-494 (615)
72 PF13428 TPR_14: Tetratricopep 41.8 38 0.00082 27.3 3.8 36 220-256 5-40 (44)
73 KOG1586 Protein required for f 41.7 1.9E+02 0.0041 32.7 10.1 88 225-329 23-110 (288)
74 PF13414 TPR_11: TPR repeat; P 41.4 24 0.00052 30.6 2.8 28 219-246 6-33 (69)
75 TIGR02917 PEP_TPR_lipo putativ 41.0 1.8E+02 0.004 37.4 11.9 49 313-367 771-819 (899)
76 smart00028 TPR Tetratricopepti 40.7 20 0.00044 24.4 1.9 26 220-245 5-30 (34)
77 cd02682 MIT_AAA_Arch MIT: doma 39.9 25 0.00055 32.5 2.7 22 227-248 17-38 (75)
78 KOG1174 Anaphase-promoting com 39.9 1.3E+02 0.0028 36.5 8.9 105 219-339 337-465 (564)
79 PRK10370 formate-dependent nit 39.8 2.2E+02 0.0047 30.9 10.5 103 216-343 73-175 (198)
80 PF12584 TRAPPC10: Trafficking 39.8 1.1E+02 0.0024 31.7 7.8 77 572-648 25-114 (147)
81 PF13584 BatD: Oxygen toleranc 39.6 2.7E+02 0.0059 34.3 12.6 73 572-648 22-98 (484)
82 PRK10803 tol-pal system protei 39.5 1.1E+02 0.0023 35.0 8.3 86 225-338 152-243 (263)
83 PF13584 BatD: Oxygen toleranc 39.1 8.3E+02 0.018 30.1 17.2 223 574-843 139-385 (484)
84 PF04442 CtaG_Cox11: Cytochrom 38.9 1.4E+02 0.003 31.4 8.2 63 708-781 58-131 (152)
85 KOG0547 Translocase of outer m 38.7 27 0.00058 42.7 3.4 34 215-248 114-147 (606)
86 PF13432 TPR_16: Tetratricopep 38.1 29 0.00064 29.8 2.8 31 215-245 30-60 (65)
87 PF11817 Foie-gras_1: Foie gra 37.2 2.3E+02 0.0051 31.8 10.5 88 352-480 158-245 (247)
88 KOG2625 Uncharacterized conser 37.1 1.3E+02 0.0028 33.2 7.8 115 1006-1157 211-325 (348)
89 TIGR01451 B_ant_repeat conserv 37.0 49 0.0011 28.3 3.9 30 711-742 6-35 (53)
90 KOG1941 Acetylcholine receptor 36.8 3.5E+02 0.0076 32.4 11.6 144 223-383 213-361 (518)
91 PF00927 Transglut_C: Transglu 36.8 32 0.00069 33.3 3.1 70 1076-1158 11-87 (107)
92 PF14796 AP3B1_C: Clathrin-ada 36.3 71 0.0015 33.3 5.6 57 714-774 82-138 (145)
93 COG1470 Predicted membrane pro 35.9 96 0.0021 37.9 7.3 86 688-776 256-343 (513)
94 PF03896 TRAP_alpha: Transloco 35.5 1.5E+02 0.0031 34.5 8.5 83 1076-1165 95-181 (285)
95 TIGR03780 Bac_Flav_CT_N Bacter 34.5 60 0.0013 37.4 5.2 90 900-993 183-276 (285)
96 smart00809 Alpha_adaptinC2 Ada 34.3 2.4E+02 0.0051 26.8 8.7 57 716-776 17-73 (104)
97 COG3071 HemY Uncharacterized e 33.9 31 0.00067 41.1 2.9 65 218-296 330-394 (400)
98 KOG1173 Anaphase-promoting com 33.6 2.3E+02 0.0051 35.5 10.1 141 221-382 317-485 (611)
99 PRK14081 triple tyrosine motif 33.6 4.8E+02 0.01 33.8 13.2 116 573-736 397-517 (667)
100 PTZ00128 cytochrome c oxidase 33.3 1.3E+02 0.0029 33.6 7.5 75 693-781 117-202 (232)
101 PRK02603 photosystem I assembl 33.1 3.2E+02 0.0069 28.5 10.2 42 218-262 37-78 (172)
102 PF04212 MIT: MIT (microtubule 32.8 39 0.00084 30.2 2.7 19 228-246 17-35 (69)
103 COG1361 S-layer domain [Cell e 32.6 2.2E+02 0.0048 35.4 10.3 67 708-776 158-226 (500)
104 PF13473 Cupredoxin_1: Cupredo 32.5 1.7E+02 0.0037 28.1 7.4 56 570-639 35-90 (104)
105 cd02681 MIT_calpain7_1 MIT: do 32.3 38 0.00083 31.3 2.6 20 228-247 18-37 (76)
106 PF06030 DUF916: Bacterial pro 32.0 2.4E+02 0.0051 28.4 8.4 73 571-644 20-118 (121)
107 PF11817 Foie-gras_1: Foie gra 31.6 56 0.0012 36.7 4.4 58 211-268 173-231 (247)
108 PF12968 DUF3856: Domain of Un 31.3 4.3E+02 0.0093 27.0 9.7 92 223-338 16-126 (144)
109 cd00189 TPR Tetratricopeptide 30.5 2.7E+02 0.0059 23.4 7.9 27 221-247 5-31 (100)
110 PRK12370 invasion protein regu 30.4 4.3E+02 0.0093 33.3 12.4 44 216-259 338-382 (553)
111 KOG1631 Translocon-associated 30.2 1.3E+02 0.0029 33.4 6.6 64 713-776 72-137 (261)
112 PF13432 TPR_16: Tetratricopep 29.8 22 0.00047 30.6 0.6 25 222-246 3-27 (65)
113 PRK05089 cytochrome C oxidase 29.5 1.6E+02 0.0036 32.0 7.2 63 708-781 85-158 (188)
114 COG4700 Uncharacterized protei 29.4 2.2E+02 0.0047 31.2 7.9 39 221-259 94-132 (251)
115 KOG4626 O-linked N-acetylgluco 29.3 4.1E+02 0.0089 34.0 11.1 40 221-260 223-263 (966)
116 COG5608 LEA14-like dessication 29.2 1.7E+02 0.0037 30.7 6.8 55 575-629 45-105 (161)
117 PRK04841 transcriptional regul 29.1 8.6E+02 0.019 32.3 15.6 62 318-380 579-640 (903)
118 COG3175 COX11 Cytochrome oxida 28.7 2.7E+02 0.0058 30.1 8.3 71 708-781 84-157 (195)
119 PF11622 DUF3251: Protein of u 28.5 2.1E+02 0.0046 30.4 7.6 62 719-780 78-145 (165)
120 PRK11189 lipoprotein NlpI; Pro 27.6 5.8E+02 0.012 29.3 11.9 29 217-245 99-127 (296)
121 PF09976 TPR_21: Tetratricopep 27.5 5.7E+02 0.012 25.8 10.7 94 219-338 51-144 (145)
122 PRK12370 invasion protein regu 27.5 3.3E+02 0.0071 34.3 10.7 21 227-247 315-335 (553)
123 PF12895 Apc3: Anaphase-promot 27.4 4.6E+02 0.01 23.6 9.6 80 229-338 2-84 (84)
124 KOG4234 TPR repeat-containing 27.3 3E+02 0.0065 30.5 8.5 42 210-251 89-130 (271)
125 TIGR03780 Bac_Flav_CT_N Bacter 27.3 1.8E+02 0.0038 33.8 7.3 29 715-743 179-209 (285)
126 PF13371 TPR_9: Tetratricopept 27.0 52 0.0011 28.8 2.6 25 222-246 35-59 (73)
127 PF03173 CHB_HEX: Putative car 26.8 2E+02 0.0044 30.6 7.2 66 716-781 29-109 (164)
128 PLN03098 LPA1 LOW PSII ACCUMUL 26.3 1.4E+02 0.0031 36.6 6.7 27 219-245 78-104 (453)
129 TIGR02917 PEP_TPR_lipo putativ 26.1 5.6E+02 0.012 33.0 12.7 25 220-244 469-493 (899)
130 PF10610 Tafi-CsgC: Thin aggre 26.0 3.5E+02 0.0075 26.7 7.8 55 583-637 26-83 (106)
131 PF13174 TPR_6: Tetratricopept 26.0 49 0.0011 24.1 1.9 24 222-245 6-29 (33)
132 KOG0545 Aryl-hydrocarbon recep 25.8 3.5E+02 0.0075 30.9 8.9 35 222-256 184-224 (329)
133 PRK15331 chaperone protein Sic 25.6 4.9E+02 0.011 27.9 9.7 56 223-298 44-99 (165)
134 PF14646 MYCBPAP: MYCBP-associ 25.4 1.1E+02 0.0024 37.4 5.7 64 714-781 244-316 (426)
135 cd02683 MIT_1 MIT: domain cont 25.4 57 0.0012 30.2 2.5 20 228-247 18-37 (77)
136 PRK15179 Vi polysaccharide bio 25.3 3.6E+02 0.0077 35.3 10.5 117 216-341 86-217 (694)
137 PF06280 DUF1034: Fn3-like dom 25.1 4.8E+02 0.01 25.3 9.2 57 577-633 7-82 (112)
138 KOG1125 TPR repeat-containing 23.8 74 0.0016 39.7 3.8 92 218-339 432-525 (579)
139 PRK11447 cellulose synthase su 23.5 8.2E+02 0.018 33.9 14.1 46 286-339 367-412 (1157)
140 TIGR02552 LcrH_SycD type III s 23.4 4.8E+02 0.01 25.3 9.0 95 218-341 19-114 (135)
141 PRK09782 bacteriophage N4 rece 23.3 4.7E+02 0.01 35.7 11.3 25 221-245 547-571 (987)
142 PF09976 TPR_21: Tetratricopep 23.0 46 0.001 33.8 1.6 28 216-243 118-145 (145)
143 COG2967 ApaG Uncharacterized p 22.9 2.1E+02 0.0044 28.9 5.8 51 720-771 31-84 (126)
144 PRK10747 putative protoheme IX 22.7 62 0.0013 38.9 2.9 46 216-261 328-373 (398)
145 PF02753 PapD_C: Pili assembly 22.6 76 0.0016 28.1 2.7 49 584-633 1-49 (68)
146 PRK04841 transcriptional regul 22.5 9.9E+02 0.021 31.7 14.3 159 219-382 576-761 (903)
147 cd03172 SORL_classII Superoxid 22.4 5.2E+02 0.011 25.3 8.7 62 574-639 18-90 (104)
148 PF11614 FixG_C: IG-like fold 21.0 2.3E+02 0.005 27.9 6.1 74 688-776 10-84 (118)
149 PF13595 DUF4138: Domain of un 21.0 1.7E+02 0.0037 33.2 5.7 88 900-991 144-235 (246)
150 PF13595 DUF4138: Domain of un 21.0 3.9E+02 0.0084 30.3 8.5 32 712-743 137-170 (246)
151 PF00635 Motile_Sperm: MSP (Ma 21.0 3.4E+02 0.0073 25.8 7.1 54 577-632 17-70 (109)
152 PRK10049 pgaA outer membrane p 20.3 7.3E+02 0.016 32.7 12.2 86 285-377 325-418 (765)
153 PRK15359 type III secretion sy 20.0 79 0.0017 32.3 2.6 30 217-246 59-88 (144)
154 PF00630 Filamin: Filamin/ABP2 20.0 1.7E+02 0.0038 27.4 4.8 66 574-639 17-86 (101)
No 1
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=100.00 E-value=7.5e-169 Score=1641.81 Aligned_cols=1034 Identities=30% Similarity=0.488 Sum_probs=819.6
Q ss_pred CCCCCCccccceeEEEEEeCCCCChhHHHHHHHHHhccCeeecCCCCCcccccCCCCCCCCCCCCCceEEEEeecC-CCC
Q 045708 1 MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGG-APP 79 (1196)
Q Consensus 1 me~~~s~~~parvrvLvvPiG~i~~~~F~~~~~~L~~~~~VrL~DIt~~~~~~~~~~F~p~~fp~G~i~~~f~t~~-~~~ 79 (1196)
||++.||++||||||||||||+|++++|.+|+++||++++|||+||+|++..+++++|+|++||+|+|+|+|+++. +.+
T Consensus 1 m~~~~s~~~pa~vrvlv~PiG~i~~~~F~~~~~~l~~~~~v~L~di~~~~~~~~~~~F~p~~~p~G~i~~~f~~~~~~~~ 80 (1185)
T PF08626_consen 1 MEDDYSFIAPARVRVLVVPIGPIKRSRFNRYVERLQRHNEVRLGDISPDTPRPERSPFSPQAFPDGRILYDFVTSVPPEH 80 (1185)
T ss_pred CCCCccccCccEEEEEEEcCCCCCHHHHHHHHHHHhhcCeEeccccccccCccccCCCCCCCCCCceEEEEEecCCCCCc
Confidence 9999999999999999999999999999999999999999999999998765679999999999999999999998 457
Q ss_pred CCCccccccceEEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCceEEEEEEec-CCCCccccCCCCCCcEEEeC-CCCcc
Q 045708 80 SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFS-PCDSHLEEGGKKGDNLIMFP-PADQQ 157 (1196)
Q Consensus 80 s~l~dFq~~RkvlgVIgI~d~~~~~dl~~~~~~~~~lk~~YP~alv~rclvFd-~~~~~~~~~~~~~~~lv~~P-~~~~~ 157 (1196)
++|+|||+|||+||||||+||++.++++. +|+++|++||++++||||+|| +.++.. ....++.++|| +.++.
T Consensus 81 ~~l~dFe~~R~~l~vIgi~~~~~~~~~~~---~~~~l~~~yp~~l~~~~~~F~~~~~~~~---~~~~~~~~~~~~~~~~~ 154 (1185)
T PF08626_consen 81 LFLEDFEPFRRVLGVIGIADCSSDPDLNE---EFEQLKERYPSALVHRCFVFDSPEDEQN---DNSDEDLVVFPSPSDSQ 154 (1185)
T ss_pred cccccccccCceEEEEEEEcCCCCcchhh---HHHHHHhhcchhhhhheeEeeccccccc---cCCCCceEEEecCcccc
Confidence 79999999999999999999999888766 899999999999999999999 433321 33445567777 44557
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH---HHhhhccCcc------------------------ccCCCCCCCCCCcH-HHH-
Q 045708 158 TQEFHLQTMMQDIAASLLMEFEKW---VLRAESAGTI------------------------LKTPLDSQASLSSE-EVI- 208 (1196)
Q Consensus 158 ~~~~~l~TvmcDi~~~lL~~le~~---~~s~~s~~si------------------------l~tpl~s~~~lssd-e~~- 208 (1196)
++.++|+|+||||+++||++|+++ ...+++++++ +.+|.+++.+++++ +.+
T Consensus 155 ~~~~~l~t~mcDi~~~lL~~l~~~s~~~~tl~s~~~i~~~~~~~~~~~~~~~~lss~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1185)
T PF08626_consen 155 SLETTLETVMCDISSSLLAELESLSYKAVTLRSPGSIGGSAVLKPTLNNASKRLSSFKPSLLSAPSESSDSVGSSLSSSD 234 (1185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhheeccCCccccCcccccccccccccccccCCCcccCCCcccccccCccccccc
Confidence 789999999999999999999999 3345666543 34455555544442 122
Q ss_pred hhhhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCc------------
Q 045708 209 KAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKD------------ 275 (1196)
Q Consensus 209 r~kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~------------ 275 (1196)
|+|||++||+.|++||||||||+|.|||++|+||++.+|+.+||||||+||||++ |++++.+.+ .+
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~-~~~qip~i~~~~~~ 313 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLG-MDFQIPQICSPLCP 313 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccC-CCccccchhcccCC
Confidence 8999999999999999999999999999999999999999999999999999997 555553322 11
Q ss_pred -------------------------------------hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHH
Q 045708 276 -------------------------------------AVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKL 318 (1196)
Q Consensus 276 -------------------------------------~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~ 318 (1196)
..++++|++++++|+.+|+|+.+ .+.+.+|++ +|+||+||+
T Consensus 314 ~~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~-~~~~~~p~l-v~~E~~lr~ 391 (1185)
T PF08626_consen 314 ISSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTN-DTSEYVPQL-VYSEACLRF 391 (1185)
T ss_pred CCCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhc-cccccCcch-HHHHHHHHH
Confidence 12467889999999999999975 355567776 678999999
Q ss_pred HHHHhhcc--------------------chHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 045708 319 ARFLCRRE--------------------LAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQV 378 (1196)
Q Consensus 319 a~~L~~~~--------------------~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l 378 (1196)
|+||++.+ .+.||+++++++++.++.+|++.|||+||++||+||++|||+||+|||+|++
T Consensus 392 ~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l 471 (1185)
T PF08626_consen 392 ARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLREL 471 (1185)
T ss_pred HHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999988 8899999999999998888999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHhhcCccccccccccccccccCCCccCCCCccccchhhhhhcccccchHHHHHHHHH
Q 045708 379 AQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLRE 458 (1196)
Q Consensus 379 ~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~g~~~~d~~~~~~~s~~~v~~~fg~gW~~LQi~vL~e 458 (1196)
++.+++...++. .+...+|..+++.||+........... ..+.+ .+|++||+++|++
T Consensus 472 ~~~~~~~l~~~~-~s~~~lL~~~~~~Ygi~~~~~~~~~~~------------~~~~~----------~~W~~LQi~vL~~ 528 (1185)
T PF08626_consen 472 AVQLVPGLIHWH-QSYRSLLEELCKGYGISLDPESSSEDS------------SKGSQ----------SNWPSLQIDVLKE 528 (1185)
T ss_pred HHHhccccCCcc-hHHHHHHHHHhccCcccCCcccccccc------------ccccc----------cCCHHHHHHHHHH
Confidence 999987663333 345568899999999977543222110 00000 2399999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhC--CCCCcccCCCCCcc-ccccCCC-CCCcccc
Q 045708 459 ILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERL--PSGTRCADSALPFV-RLYSFPL-HPSQMDI 534 (1196)
Q Consensus 459 ~i~~a~~~~d~~~~~~~~~~LL~~~~~~Ls~~eQ~~L~~~l~~~s~~l--~~~~~~~~p~lPfv-rl~~~p~-~p~~~~i 534 (1196)
||.+|++++|+..+++|+++|||+|+|+|+++||++|++++.+.+.+. +......+||+||+ |-..++. .|....+
T Consensus 529 ~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i 608 (1185)
T PF08626_consen 529 CINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDI 608 (1185)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccch
Confidence 999999999999999999999999999999999999999998766433 33344457888884 3221211 1222222
Q ss_pred ccCCCCCccccCCCCCCCCceecCCCCCCCCCCCccceeEEecCeEEEEEEEECCCcceEEEeEEEEEeecceeeeeeee
Q 045708 535 VKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPIS 614 (1196)
Q Consensus 535 v~~~p~k~~~~~~~~~~~PFIYnPf~k~~~~~~~k~~~~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes~~~s 614 (1196)
....+....+...+..++|| ||||.|+.++...+.+.+||+||+++|.|||||||+|||+|++|+|.++|++|++.+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~pF-YnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~fes~~~s 687 (1185)
T PF08626_consen 609 LPPHPRKSEASSQSINKGPF-YNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVPFESYPVS 687 (1185)
T ss_pred hhhhhhhhhhcccCCCCCCc-CChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCccccceee
Confidence 22112222223344467899 99999865554456789999999999999999999999999999999999999999999
Q ss_pred EEE-CCCCeeEEEEEEEeCeeeeEEEceEEEEEecccccccccchhhhhhhhccCCcccCCccccCCCCc----------
Q 045708 615 VEL-PPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKL---------- 683 (1196)
Q Consensus 615 i~L-~P~S~~~I~Lsg~P~~~G~L~I~G~~~~v~g~~~e~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~---------- 683 (1196)
++| +|+++++|+|+|+|+++|+|+|+||.++++||..++.+....+. .+.++....++.+. +....
T Consensus 688 ~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~~~~~~~~--~~~k~~~~~~~~~~-~~~~~~~~~~l~~~~ 764 (1185)
T PF08626_consen 688 IVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFFPIFKSEW--GSIKGKKLKDKFRK-GSRLDKPSPPLESES 764 (1185)
T ss_pred eEecCCCcceEEEEEEEECccceEEEEEEEEEEcccccceecccCccc--chhhhhhccccccc-ccccccccccccccc
Confidence 988 99999999999999999999999999999999655543332211 01111111111111 10000
Q ss_pred cCcCCceEEEeCCCCcEEEEeeC-CCcceEEecccEEEEEEEEEeccccccceEEEEEecCCCc--------------ce
Q 045708 684 KNVSVPNISVVPPLPLLVSNVVG-GDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQD--------------SI 748 (1196)
Q Consensus 684 ~~~~~l~i~VIp~qP~L~i~~ts-~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~--------------~i 748 (1196)
.....++|+|||+||.|++..++ +++++||||||+++|+|||+|+|++||||+.|+|+|++++ ++
T Consensus 765 ~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~ 844 (1185)
T PF08626_consen 765 PKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDEL 844 (1185)
T ss_pred cccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhh
Confidence 12346999999999999998875 8999999999999999999999999999999999997643 45
Q ss_pred EEEecccc-------ccccCCCCCCEEEEEEEEEEcccCCCCccccccccccCCcccccccCCCCeEEEEeccccCCCCC
Q 045708 749 ISIASETL-------KSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSED 821 (1196)
Q Consensus 749 ~~~e~e~~-------~~~~~I~PG~s~t~~i~v~g~k~g~~~~~~~~~~~~~~~~~~~~k~~t~~~i~i~Y~~~~g~~~~ 821 (1196)
|++|++++ ....+|+||++++|++++.| ++|.+++ +.+.++|+|+|. + .
T Consensus 845 yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~-~~~~~~~-------------------~~~~i~l~y~~~-~-~-- 900 (1185)
T PF08626_consen 845 YELEWQLFKLPAFRILNKPPIPPGESATFTVEVDG-KPGPIQL-------------------TYADIQLEYGYS-G-E-- 900 (1185)
T ss_pred hhhhhhhhcCcceeecccCccCCCCEEEEEEEecC-cccccce-------------------eeeeEEEEeccc-C-C--
Confidence 66666542 12239999999999999999 9997666 778899999997 3 2
Q ss_pred CCCCCCeeEEEeeEEEEEEcceEEEeeeeecCCCCccccCCCccccccccccCCccccCCcccccceeec--CCCCCcce
Q 045708 822 QSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKID--PFRGSWGL 899 (1196)
Q Consensus 822 ~~~~~~~R~l~~pl~vtV~~sle~~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~w~l 899 (1196)
+.+.+|+|||++|++|||+||||+++|||+|+. +...+++.+ .+.+. ... .+.| .+.++|||
T Consensus 901 ~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~-~~~~~~~~~--~~~~~------------~~~-~~~~~~~~~~~~cl 964 (1185)
T PF08626_consen 901 DSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLN-SDSVSSNSD--SWISY------------ITS-LKSDVNDDSSDYCL 964 (1185)
T ss_pred CCCCCeeEEEEEEEEEEEeceEEEeeeeEEecc-cccccccCc--chhhh------------hhh-hcccccCCCCCeEE
Confidence 245689999999999999999999999999994 222222222 11100 001 1111 34557888
Q ss_pred eEEEeeecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCccCccceeeCCCCceEEEEeecccccCCCCCCceeecccCC
Q 045708 900 RFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVKDMQSN 979 (1196)
Q Consensus 900 ~~l~l~l~N~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~rvl~p~~~~~lp~~~~~~~~~~~~~~ 979 (1196)
|.|||||+|+.+++|++... + ++.+.+.+|+||+|+||+||++|++|+..+.+ .++.
T Consensus 965 --L~lDlrNsw~~~~~v~l~~~----~------------~~~~~~~~I~pg~t~Ri~vPi~Ri~l~~~~~~-----~~pi 1021 (1185)
T PF08626_consen 965 --LLLDLRNSWPNPLSVNLHYD----E------------DFSSSEITIEPGHTSRIIVPIKRIYLEDPDFS-----FKPI 1021 (1185)
T ss_pred --EEEEEEecCCCceEEEEEec----c------------CccccceEECCCCeEEEEEEecccccCCcccc-----cCcC
Confidence 99999999999988877771 0 11334569999999999999999998876542 1333
Q ss_pred CCCCCCccccccc-c------cHHHHHHHHHHHhhheeEEEecCCccceeeehHHHHHHHHhhhhhhhccCCcceeeEEE
Q 045708 980 GTSGSRSSSFSEK-N------TKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRL 1052 (1196)
Q Consensus 980 ~~~~~r~~~~~~~-~------~~~e~~~~~~~l~~~i~~~w~~~~~~~g~l~~~~~~~~~l~~~~~~~~~~d~~~~~~~~ 1052 (1196)
+.. +|++||+.+ . ..+|+|||||+|+++|+++|+++++++|++++|+.|| |+++|+|+|+.||++|+|+|
T Consensus 1022 p~l-~~~rqfv~sk~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~ir--Lt~~mv~~L~~~~i~i~~~l 1098 (1185)
T PF08626_consen 1022 PSL-SRNRQFVVSKLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIR--LTPRMVDILRLDPIQIDFSL 1098 (1185)
T ss_pred CCc-ccCceeEECCCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccc--cCHHHHHhhccCccceEEEE
Confidence 333 467777555 2 3379999999999999999998887799999998884 99999999999999999999
Q ss_pred eecCCcccccCCCCCCCCCCCCcceeecceeeEEEEecCchhcccceeeeeeccCCCccc---cCCCCCcEEeccccccc
Q 045708 1053 VKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENC---IEGTKPTVLWSGVLNEI 1129 (1196)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~ 1129 (1196)
..++... ... ...+..+.++||++|+|.|+|||+++|+ ++ .|.++.+.+| ++.+ ++|+|+|+||++
T Consensus 1099 ~~~~~~~------~~~-~~~~~~v~~~~f~~l~v~i~N~s~~~i~--l~-~~~~~~~~~~~~~~~~~-~ril~~G~Lq~~ 1167 (1185)
T PF08626_consen 1099 SDDSDSV------KVG-ESSKFSVQVDEFYTLRVTITNRSSRPIS--LR-LQPSLDHQNGNVALDLD-RRILWNGSLQQP 1167 (1185)
T ss_pred ccccccc------ccC-cceeEEEecCCcEEEEEEeecCCCCcee--eE-eeeeccCCCcccccCcC-CeEEEEccCccc
Confidence 7654111 000 0134567899999999999999999999 33 4445555544 4555 599999999999
Q ss_pred ccccCCCCceeEEEEEEE
Q 045708 1130 TMEVPPLQESKHCFSLYF 1147 (1196)
Q Consensus 1130 ~~~~~~~~~~~~~~~~~~ 1147 (1196)
.++|+|+++++|+++++|
T Consensus 1168 l~~l~p~~~~~~~~~lif 1185 (1185)
T PF08626_consen 1168 LPELEPGESTEHELSLIF 1185 (1185)
T ss_pred ccccCCCceEEEEEEEEC
Confidence 999999999999999987
No 2
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-128 Score=1143.12 Aligned_cols=1073 Identities=28% Similarity=0.373 Sum_probs=821.5
Q ss_pred CCCCCCccccceeEEEEEeCCCCChhHHHHHHHHHhccCeeecCCCCCcccccCCCCCCCCCCCCCceEEEEeecCC-CC
Q 045708 1 MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGA-PP 79 (1196)
Q Consensus 1 me~~~s~~~parvrvLvvPiG~i~~~~F~~~~~~L~~~~~VrL~DIt~~~~~~~~~~F~p~~fp~G~i~~~f~t~~~-~~ 79 (1196)
||+++||+.|.+|+++|+|+|.|+|..|..|.+++.+. ++++.+|++.+ +..|+|++||.|+++++|.|..+ ..
T Consensus 1 Mk~d~S~v~ps~i~~lVlpig~~prKsl~ay~~ller~-~~h~~~v~~id----s~~f~p~~fp~grLfh~flt~s~d~~ 75 (1235)
T KOG1953|consen 1 MKFDFSFVAPSRIQSLVLPIGRVPRKSLSAYLQLLERV-QLHDVPVATID----SKSFNPLAFPLGRLFHNFLTSSDDQQ 75 (1235)
T ss_pred CCCcccccccceeEEEEEEecccCccccHHHHHHHHHH-hhccccceecc----ccccCcccCCcceeEEeeeccCchhh
Confidence 99999999999999999999999999999999888875 67788888875 45899999999999999999877 45
Q ss_pred CCCccccccceEEEEEE--Eec-----------------CCCCC-CHHHHHHHHHHHHHh-CCCceEEEEEEecCC-CCc
Q 045708 80 SPWEDFQSNRKILAVIG--ICH-----------------CPSSP-DLDSVIEQFNAACKG-YNSALVKRCFAFSPC-DSH 137 (1196)
Q Consensus 80 s~l~dFq~~RkvlgVIg--I~d-----------------~~~~~-dl~~~~~~~~~lk~~-YP~alv~rclvFd~~-~~~ 137 (1196)
..++|||+|||+|++|| +.+ |++.+ ++++....|+..|.. |.+.+..||++|++. +++
T Consensus 76 ~~l~efe~fRrvFvliG~p~tng~~e~~~k~l~s~~lv~~ss~p~~ld~~~nvfn~~~~~~yenI~c~rciiig~~~dss 155 (1235)
T KOG1953|consen 76 ALLEEFEYFRRVFVLIGDPITNGSEEQEVKQLCSTLLVWRSSIPHALDAKCNVFNPDCPEDYENIFCARCIIIGPRSDSS 155 (1235)
T ss_pred hhHhhhhhheEEEEEecCCCCCccccccchhhcccceeccCCCchHHHHHHHHhccccchhhhhhhcchheEecCCchhh
Confidence 68999999999999999 444 44556 788888999988888 999988999999998 655
Q ss_pred cccCC-----CCCCcEEEeCCCCccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CccccCCCCC--CCCCCcHHH
Q 045708 138 LEEGG-----KKGDNLIMFPPADQQT--QEFHLQTMMQDIAASLLMEFEKWVLRAESA-GTILKTPLDS--QASLSSEEV 207 (1196)
Q Consensus 138 ~~~~~-----~~~~~lv~~P~~~~~~--~~~~l~TvmcDi~~~lL~~le~~~~s~~s~-~sil~tpl~s--~~~lssde~ 207 (1196)
.+... ....+++..++...++ .++++.|.|.||.+++.++...+..+..+. .+..+||.++ +.+++..+.
T Consensus 156 ~~~v~r~~~~~i~~n~~l~~~s~~Q~~~~es~~~tpM~ai~~s~~m~rk~~s~~~~s~~ss~~~tp~~s~~qasl~~~st 235 (1235)
T KOG1953|consen 156 INSVMRSILCDITANLLLGFSSLEQSIHAESVILTPMTAIPHSAPMQRKNSSASIHSLGSSSRPTPTRSPSQASLSVNST 235 (1235)
T ss_pred hhhhhhccccccccceeeccchhhhhhhhHHHHhhHHHHhhhhhhhhhccceeeehhcCCCCCCCCccchhhhccchHHH
Confidence 54322 2334777777765444 899999999999999999999886666555 5667888877 567777776
Q ss_pred -HhhhhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHH-HHHHhhhccCCCchh--------
Q 045708 208 -IKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGS-VCALLVDRMGQKDAV-------- 277 (1196)
Q Consensus 208 -~r~kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi-~~~llL~~~~~~~~~-------- 277 (1196)
.|+|||++||++|++||||||||+|.|||+||..||+++|+++||||+|+||||+ +|+++++++|.. .+
T Consensus 236 ~~rskkksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC~Ll~~~lG~~-~qip~~~s~~ 314 (1235)
T KOG1953|consen 236 TERSKKKSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVCLLLMAHLGVD-VQIPPNISSM 314 (1235)
T ss_pred HHHHHHhhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHHHHHHHHhCcc-cccCchhhhh
Confidence 7999999999999999999999999999999999999999999999999999997 799999998754 11
Q ss_pred ------------------hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhc--------------
Q 045708 278 ------------------LEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRR-------------- 325 (1196)
Q Consensus 278 ------------------~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~-------------- 325 (1196)
.++.+..+++.+.++|.|....++ .+.++++++.+....++++.+++
T Consensus 315 ~p~~~l~~e~~~tg~s~~~sN~~~~~~~s~~q~~~~~~~spa-~~~sp~s~e~s~~~~a~~~~ve~~n~~g~~~n~sd~~ 393 (1235)
T KOG1953|consen 315 FPSYNLRLEAFGTGKSDALSNFITEMRNSVDQLYQKSTLSPA-DAVSPLSFEESILRYAHLLTVEYINCKGFNDNASDHI 393 (1235)
T ss_pred cccccccccccCCcccccccchhheeeccccccccccccChh-hccCCcchHHHHHHHHhhcceeecccccccccccchh
Confidence 123444445555566644433222 25778888855555566655542
Q ss_pred ---------c---------chHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhc
Q 045708 326 ---------E---------LAKDVVELLTSAADG-AKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQE 386 (1196)
Q Consensus 326 ---------~---------~~~ei~~~L~~a~~~-~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l~~~lv~~~ 386 (1196)
. +.+++++.|.++.+. .+..++..+++.+|..+|.+++.+||.||.++|.|++.+.|.+..
T Consensus 394 ir~~p~~vk~~~~y~P~~~l~e~vie~ltn~ad~~~ks~~s~~~~~~iv~~~~r~L~~i~~s~k~~~F~r~~~~kyl~l~ 473 (1235)
T KOG1953|consen 394 IRQAPIPVKKATTYVPQVVLNEAVIEQLTNRADGQHKSSLSIRERCRIVGAMARMLGSIGFSRKRVKFLRELVSKYLSLT 473 (1235)
T ss_pred hhcCCcchhhccccChHHHHHHHHHHHHHhhhcchhhcccchHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhc
Confidence 0 246678888888877 778888899999999999999999999999999999998886544
Q ss_pred ccchhh-hHHHHHHHHHhhcCcccc-----------------ccccccccccccC-----------CCccCCCCccccch
Q 045708 387 NRSAAI-CAMQVLAMTTKAYRVQGR-----------------ASISKSSLSNETG-----------SSLVDGGKMHHQSV 437 (1196)
Q Consensus 387 ~~~~~~-s~~~lL~~~~~~Ygi~~~-----------------~~~~~~~~~~~~g-----------~~~~d~~~~~~~s~ 437 (1196)
+.+... ...++...+...|.-.+. ..+.......++. ......+..+.+..
T Consensus 474 n~~m~~r~q~qi~s~~a~myre~g~~rkqaf~~rlsv~~~L~~T~~~~~~~~dyKt~~~~l~~lLe~~g~e~~~~~d~~s 553 (1235)
T KOG1953|consen 474 NVLMETRRQNQIKSTMAGMYREVGASRKQAFFKRLSVCNILPLTSEICQEYGDYKTDGSLLNPLLEKWGSEAKINVDDPS 553 (1235)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhccCccccccHHHHHHHHHhccccccCCcCccc
Confidence 433221 001110000000000000 0000000000000 00000011111111
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhCCCCCcccCCC-
Q 045708 438 QSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSA- 516 (1196)
Q Consensus 438 ~~v~~~fg~gW~~LQi~vL~e~i~~a~~~~d~~~~~~~~~~LL~~~~~~Ls~~eQ~~L~~~l~~~s~~l~~~~~~~~p~- 516 (1196)
| .-|+.||+++|+|||.+|.++||++.+++++++||+.|||+|++++|.+|++.+.+.+..++.++.||+|.
T Consensus 554 q-------~~w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~ts~~~~i~ 626 (1235)
T KOG1953|consen 554 Q-------STWSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSATSYWDPIH 626 (1235)
T ss_pred c-------ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhcccccccccceE
Confidence 1 35999999999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -------CCccccccCCCCCC-ccccccCCCCCccccCCCCCCCCceecCCCCCCCCCCCccceeEEecCeEEEEEEEEC
Q 045708 517 -------LPFVRLYSFPLHPS-QMDIVKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELAN 588 (1196)
Q Consensus 517 -------lPfvrl~~~p~~p~-~~~iv~~~p~k~~~~~~~~~~~PFIYnPf~k~~~~~~~k~~~~~V~gE~~ev~VtLqN 588 (1196)
+|+.++..+|...+ +.....++++++.|++.. ..+||||+||.|+.++. +.+.+||+||++||.|+++|
T Consensus 627 ~~d~~iild~~~lt~fPliss~~vlel~~Nrart~~pn~~-e~spFiytpfsk~~dN~--~~~LvwVvdepvef~v~v~N 703 (1235)
T KOG1953|consen 627 INDPVIILDPFMLTDFPLISSSEVLELIHNRARTGLPNSI-EKSPFIYTPFSKRQDNN--QSKLVWVVDEPVEFSVYVRN 703 (1235)
T ss_pred ecCccEecCcccccccccccChhHHHHHhcccccCCCccc-ccCceEeccccccccCc--cceEEEEeCCceEEEEEEcC
Confidence 45566777776333 222344566677776544 45599999999887664 67999999999999999999
Q ss_pred CCcceEEEeEEEEEeecceeeeeeeeEEECCCCe-eEEEEEEEeCeeeeEEEceEEEEEecccccccccchhhhhhhhcc
Q 045708 589 PCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSS-KVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQ 667 (1196)
Q Consensus 589 Pf~feL~I~sI~L~teGv~Fes~~~si~L~P~S~-~~I~Lsg~P~~~G~L~I~G~~~~v~g~~~e~~f~~~~~~~~~~~k 667 (1196)
|+.||++|++|+|+++|++|++.++++++||++. ..|+|+|+|+++|.|.|+||++++|||..++.|- ...
T Consensus 704 p~~fdl~V~Di~L~~egvnF~~~~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~gy~v~cfg~~~~lq~f--------~~~ 775 (1235)
T KOG1953|consen 704 PLSFDLEVQDIHLETEGVNFKCSHVSFTMPPNSIAERIRLTGTPTETGPLHIVGYRVKCFGCEPILQYF--------YEA 775 (1235)
T ss_pred ccceeEEEeeEEEEeccccceeeeeeeecCcccccceEEEeccccccCceeeeeEEEEEeeechHHHHH--------Hhc
Confidence 9999999999999999999999999999999999 9999999999999999999999999997654421 111
Q ss_pred CCcccCCccccCCCCccCcC-CceEEEeCCCCcEEE--EeeCCCcceEEecccEEEEEEEEEeccccccceEEEEEecC-
Q 045708 668 GLVLSDPFRCCGSAKLKNVS-VPNISVVPPLPLLVS--NVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGK- 743 (1196)
Q Consensus 668 ~~~~~~~~r~~~~~~~~~~~-~l~i~VIp~qP~L~i--~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~- 743 (1196)
|....++.+..+..+..... ...++|.|++|.+.. +...+.+++|||+||.++++||++|.|++||+++.+..+..
T Consensus 776 gd~~~s~~v~~e~~kl~~vyl~~~i~ilP~~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i 855 (1235)
T KOG1953|consen 776 GDKHKSLHVYLEKSKLVNVYLRSLITILPLWPYFPLKKDLKTKSFDCIVYAGQPTDLSITVQNLSSGPINFAEVETGELI 855 (1235)
T ss_pred ccccCCccceeccchhheeecccccccCCCcccchhhhcccCCCccEEEEcCCcceEEEEEEecCccceEEEEEeeccch
Confidence 22222233443334433322 344899999996644 34447899999999999999999999999999999999873
Q ss_pred -C--CcceE---------EEeccccc-------cccCCCCCCEEEEEEEEEEcccCCCCccccccccccCCcccccccCC
Q 045708 744 -N--QDSII---------SIASETLK-------SALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVS 804 (1196)
Q Consensus 744 -~--~~~i~---------~~e~e~~~-------~~~~I~PG~s~t~~i~v~g~k~g~~~~~~~~~~~~~~~~~~~~k~~t 804 (1196)
. ++.+. .+|...++ ....+.|....+..+.=.+ .| .+|
T Consensus 856 ~q~~~p~~~~~~~e~~s~~~e~~~l~~~l~ai~~~P~is~n~~~el~~~et~-vP----------------------~fT 912 (1235)
T KOG1953|consen 856 YQMLIPNTSFVEAEHISVLFEDSSLKAFLQAIADKPVISANRLYELQFEETN-VP----------------------TFT 912 (1235)
T ss_pred hhcCCCceeecCchhhHhhccCccchhHHHHHHhCCCCCcchhhhhhhhccC-CC----------------------Ccc
Confidence 1 22222 22322211 1112444444444443344 33 126
Q ss_pred CCeEEEEeccccCCCCCCCCCCCeeEEEeeEEEEEEcceEEEeeeeecCCCCccccCCCccccccccccCCccccCCccc
Q 045708 805 SPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRM 884 (1196)
Q Consensus 805 ~~~i~i~Y~~~~g~~~~~~~~~~~R~l~~pl~vtV~~sle~~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1196)
...+++.|+.. .+|..-+|++. ++...+++-.+ .+|+|+.-. +..+..-+.
T Consensus 913 ~~sllip~s~s-----------~~de~~Ipl~~-~l~~~efilrr--s~eip~~D~---------------e~fer~~~~ 963 (1235)
T KOG1953|consen 913 VESLLIPLSPS-----------ERDEIHIPLRA-PLSQEEFILRR--SVEIPEDDI---------------EFFERRLRI 963 (1235)
T ss_pred cccccCCCCCC-----------CCceEEEEeec-ccCcceeEEEe--eecCcccch---------------HHHHHhhcC
Confidence 66677766552 35888999999 88888888777 888887311 112223345
Q ss_pred ccceeecCCC--CCcceeEEEeeecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCccCccceeeCCCCceEEEEeeccc
Q 045708 885 DKLMKIDPFR--GSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHF 962 (1196)
Q Consensus 885 ~~l~~~d~~~--~~w~l~~l~l~l~N~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~rvl~p~~~~ 962 (1196)
...++|.|.. +.|.. ||.|.||+..|.+..+|+.+||-...-++..++ +.+|.|++++||+||+|||
T Consensus 964 p~~i~i~p~v~~~aws~--------lp~ddpf~~lv~v~~~ns~~~dl~v~~~ds~~~---~~~V~pk~t~RIliplk~~ 1032 (1235)
T KOG1953|consen 964 PVSINISPRVDLKAWSA--------LPEDDPFYCLVLVNFYNSFSEDLFVTVKDSSTD---SVLVKPKATNRILIPLKRF 1032 (1235)
T ss_pred cceEEecccccchhccc--------CCCCCceEEEEEEecccccCCccceeeccCCCc---eEEEcccccceEEEEeccc
Confidence 5678889988 78998 999999999999999999999999888888776 8899999999999999999
Q ss_pred ccCCCCCCceeecccCCCCCCCCcccccccccHHHHHHHHHHHhhh-eeEEEec-CCccceeeehHHHHHHHHhhhhhhh
Q 045708 963 KLPILDGSFFVKDMQSNGTSGSRSSSFSEKNTKAELNASIRNLISR-IKVRWQS-GRNSSGELNIKDAVQAALQSSVMDV 1040 (1196)
Q Consensus 963 ~lp~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~~~l~~~-i~~~w~~-~~~~~g~l~~~~~~~~~l~~~~~~~ 1040 (1196)
++|.+|+.+|-++.-.......|...+.++ .+.+--++|.+++ ||+||+. ++|.+||+.+|++|+. +++-+++.
T Consensus 1033 ~~~~ldg~nf~~~~~~~srgf~~s~~~ee~---mr~rfwikehisk~lk~rWk~~d~n~~Gevd~~~~I~s-~~~~~~~~ 1108 (1235)
T KOG1953|consen 1033 IMENLDGPNFSTKQFVLSRGFKKSIEDEET---MRKRFWIKEHISKELKARWKTDDNNHHGEVDLRNHILS-DEMANNLS 1108 (1235)
T ss_pred ccccccCCCcccCCCCCCcchhcCcchHHH---HHHHHHHHHHHhHhheeeeecCCcccCceeeHHHHHhh-HHHhhhhe
Confidence 999999999855444444444444444333 4444445555555 9999997 9999999999999987 89999999
Q ss_pred ccCCcceeeEEEeecCCcccccCCCCCCCCCCCCcceeecceeeEEEEecCchhcccceeeeeeccCCCccccCCCCCcE
Q 045708 1041 LLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTV 1120 (1196)
Q Consensus 1041 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1196)
++|+++++|| +| --.+.+..+....++..+.-+++++ |+++.||+ .+.|.|+|.++..|...+.+++
T Consensus 1109 ilP~ri~~gv----ng--l~d~pkvkv~~~i~~f~~ve~~~t~-~~~a~tn~------~l~I~~~d~~tq~~t~~~n~~~ 1175 (1235)
T KOG1953|consen 1109 ILPIRIQAGV----NG--LYDSPKVKVVCPIEPFKLVEEFFTH-RKQADTNM------RLKISWTDLNTQANTSSFNGRL 1175 (1235)
T ss_pred ecccceeecc----cc--cccCcccceeccccCceeeeeeech-hhhhcccc------eEEEEEEeecccccCCCCCceE
Confidence 9999999999 32 2234455555556777788888999 88888885 5677889999999999998899
Q ss_pred EecccccccccccCCCCceeEEEEEEEEecceEEEEEEEEeecchhHHHhhcccCCCCC
Q 045708 1121 LWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDE 1179 (1196)
Q Consensus 1121 ~~~g~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1196)
||+|.|. +.+++.+.+++.|+|.++|+|+|+|++.++++..+++|.|+|++-.+.|-.
T Consensus 1176 L~~Gal~-ip~~v~k~~e~~~~fnl~fiv~G~y~~~v~I~~e~~Qn~L~q~d~~a~pi~ 1233 (1235)
T KOG1953|consen 1176 LLDGALE-IPVCVNKSKEHVVEFNLFFIVTGMYNIFVRIFNEELQNGLSQPDDLAEPIL 1233 (1235)
T ss_pred EEccccc-cceEecchhhheeeeeEEEEecceEEEEEEEecccccccccccccccCccc
Confidence 9999999 799999999999999999999999999999999999999999987775543
No 3
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.6e-17 Score=199.98 Aligned_cols=597 Identities=18% Similarity=0.157 Sum_probs=361.7
Q ss_pred cccccceEEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCceEEEEEEecCCCCccccCC--------CCCCcEEEeCCCC
Q 045708 84 DFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGG--------KKGDNLIMFPPAD 155 (1196)
Q Consensus 84 dFq~~RkvlgVIgI~d~~~~~dl~~~~~~~~~lk~~YP~alv~rclvFd~~~~~~~~~~--------~~~~~lv~~P~~~ 155 (1196)
.|.| +++==--+.+..++.|. .+.+-|+++|.+|.+. =+.++-.+..++..+.+. ....... |..+
T Consensus 26 w~~p--~~l~~yvllhd~~~~~~-r~~~~~~~m~s~~g~~-~c~ll~~ns~~~~~~~~~~w~~~~~~~~~~~~~--~~~~ 99 (960)
T KOG1938|consen 26 WFAP--NTLKHYVLLHDSSSGDS-RADELLEEMKSTYGND-NCQLLQINSDSESAEMPDPWAEFDEFNSVLHST--PGLN 99 (960)
T ss_pred cccc--cccceeEEEecCCCcch-hHHHHHHHHHHHhCCC-ceeEEEecCcchhhhcCChHHHHhhccchhhcc--CCCC
Confidence 3444 56555566777788888 6678899999999976 444455555443221110 1111222 3332
Q ss_pred ccc--hh--HHHHHHHHHHHHHHHH-HHHHHHHhh-hccC---ccccC-------------CCCCCCC-C---CcHHHHh
Q 045708 156 QQT--QE--FHLQTMMQDIAASLLM-EFEKWVLRA-ESAG---TILKT-------------PLDSQAS-L---SSEEVIK 209 (1196)
Q Consensus 156 ~~~--~~--~~l~TvmcDi~~~lL~-~le~~~~s~-~s~~---sil~t-------------pl~s~~~-l---ssde~~r 209 (1196)
+.+ +. .+++.+|.+|+..=|. .+++.+..+ +... .+-++ +..++.. + .++|.
T Consensus 100 g~d~~~~d~~~i~~ilq~f~~r~lipy~E~~vr~l~e~i~~~KGvs~sf~~~~rwfigs~y~p~~~~~ilys~ds~e~-- 177 (960)
T KOG1938|consen 100 GADSTVFDYEHIMDILQHFANRALIPYIEKAVRILLEQIAQKKGVSSSFSATKRWFIGSTYAPDNTLGILYSFDSGEF-- 177 (960)
T ss_pred CccchhhhHHHHHHHHHHHHhcccccchHHHHHHHHHhhhccccchhchhHHHHHHhcCccCCCCcceeEecccchHH--
Confidence 222 21 3456666666654332 233322221 1100 00000 0011100 0 11233
Q ss_pred hhhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhh-ccCCCchhhHHHHHHHHHH
Q 045708 210 AKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVD-RMGQKDAVLEEEVKFRYNS 288 (1196)
Q Consensus 210 ~kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~-~~~~~~~~~~~ei~~~~~~ 288 (1196)
+.+-+||++++-|+|..|...|+.+...+.+.+.|..+|+|||+-+...++. ... +-...+++.
T Consensus 178 --------q~Rk~aD~~~~f~h~~~a~~~y~stkrd~~nd~am~~~a~alEm~sls~Fvq~~a~-------q~~sqyme~ 242 (960)
T KOG1938|consen 178 --------QTRKGADLLFMFGHPNLAFDAYHSTKRDFNNDKAMVYYAGALEMRSLSAFVQPDAT-------QFPSQYMEN 242 (960)
T ss_pred --------hhhhccchhhhhccccchhhhhhhhhcchhhhhHHhHhhhhhhhhhhhhhcCCcch-------hhHHHHHhh
Confidence 3345789999999999999999999999999999999999999986443442 211 123456899
Q ss_pred HHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHH-HHhc--cC
Q 045708 289 VILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIA-RLFG--TL 365 (1196)
Q Consensus 289 ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA-~vy~--~L 365 (1196)
++.+|.+.+. + ...+..|++..+.++...++.+|+++.+.+.......+ +..++...| ..++ ..
T Consensus 243 a~~~~~~i~k--~------~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl-----~~allleqaal~f~~tkp 309 (960)
T KOG1938|consen 243 AFPLYRLILK--N------YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDL-----LSALLLEQAALCFGSTKP 309 (960)
T ss_pred hhHHHHHHHh--h------ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchh-----hhHHHHHHHHHHhhcCCC
Confidence 9999987653 1 12346899999999999999999999999987664322 233333332 3344 89
Q ss_pred CchhhHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHhhcCccccccccccccccccCCCccCCCCccccchhhhhhccc
Q 045708 366 DYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFE 445 (1196)
Q Consensus 366 Gf~RK~AF~lR~l~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~g~~~~d~~~~~~~s~~~v~~~fg 445 (1196)
+|.||++||..+++.++-.+.....+..||.. ++..|.-
T Consensus 310 ~m~~ktffHpVLal~r~s~anqp~ha~R~y~~---ai~v~~~-------------------------------------- 348 (960)
T KOG1938|consen 310 PMPRKTFFHPVLALIRFSSANQPKHALRCYRQ---AIPVLKK-------------------------------------- 348 (960)
T ss_pred CccchhhcceeehhhhcccCCChhHHHHHHHH---HhhhcCC--------------------------------------
Confidence 99999999999999988665554444444433 4444432
Q ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhCCCCCcccCCC-CCcccccc
Q 045708 446 SQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSA-LPFVRLYS 524 (1196)
Q Consensus 446 ~gW~~LQi~vL~e~i~~a~~~~d~~~~~~~~~~LL~~~~~~Ls~~eQ~~L~~~l~~~s~~l~~~~~~~~p~-lPfvrl~~ 524 (1196)
.+|...-.++...++.++.-......+....-.+..+.. +++..|..++..+.+.....+......... +|.+.++.
T Consensus 349 ~~ws~~edh~~f~i~~~y~l~~~D~a~~~f~~~i~~~~k--qS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~ 426 (960)
T KOG1938|consen 349 PTWSFAEDHLYFTILHVYLLCQEDDADEEFSKLIADCMK--QSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEE 426 (960)
T ss_pred CCcchhHHhHHHhHHHhhhhhcchhHHHHHHHHHhhhhh--cChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhH
Confidence 247777777777777655444555555555444445554 499999999999887766665443222222 44443221
Q ss_pred ------CCCCCCccccc--cCC--CCCccccC--------CCCCCCC-----ceecCCCCCCCCCCCccceeEEecCeEE
Q 045708 525 ------FPLHPSQMDIV--KRN--PGREDWWA--------GSAPSGP-----FIYTPFSKGEPNDSSKQELIWVVGEPVQ 581 (1196)
Q Consensus 525 ------~p~~p~~~~iv--~~~--p~k~~~~~--------~~~~~~P-----FIYnPf~k~~~~~~~k~~~~~V~gE~~e 581 (1196)
-|.+|...+.. -++ -....|.. ..+...| +.++++..+ ....+-|+||+.+
T Consensus 427 ~~vi~~~~~~~t~~e~~~at~~~~~sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~------~~~~v~v~Ge~~~ 500 (960)
T KOG1938|consen 427 RLVILSEPTRSTDAEALPATHQYLVSDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDK------FKNPVPVAGEPIK 500 (960)
T ss_pred HHHHhcCCCCCcchhhhhhhhhhccccccchhHHHHHHHHHhcccCCCcchhcccchhccc------cccccccCCccee
Confidence 11122111110 000 00000100 1112233 444444322 1455789999999
Q ss_pred EEEEEECCCcceEEEeEEEEEeecc--e-------ee---eeeee--------EEECCCCeeEEEEEEEeCeeeeEEEce
Q 045708 582 VLVELANPCGFDLRVDSIYLSVHSG--N-------FD---AFPIS--------VELPPNSSKVITLSGIPTSVGPVTIPG 641 (1196)
Q Consensus 582 v~VtLqNPf~feL~I~sI~L~teGv--~-------Fe---s~~~s--------i~L~P~S~~~I~Lsg~P~~~G~L~I~G 641 (1196)
+.|++.||+...+.++++.|+++-. . .. ..|+. +.+.+.+..++.|...|+..|.++|.|
T Consensus 501 l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~~~~~Pe~~~~s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~ 580 (960)
T KOG1938|consen 501 LSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSHSQSSPELIDDSAFPELLKSGEEDFTFMLRDFPRAIGILKIIR 580 (960)
T ss_pred eEEeecCccceeccccchhhhhhccccccccccccccccccChhhhhhhhHHHHHhcchhceeeeeeeccccceEEeeee
Confidence 9999999999999999999966532 1 11 22222 566777888999999999999999998
Q ss_pred EEEEE------eccccc-ccccchhhhhhhhccCCcccCCccccCCCCccCcCCceEEEeCCCCcEEEEeeCCCcceEEe
Q 045708 642 CTVHC------FGVITE-HIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILY 714 (1196)
Q Consensus 642 ~~~~v------~g~~~e-~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~l~i~VIp~qP~L~i~~ts~~~~vmLl 714 (1196)
..+.. .+++.+ +.|+... +.+...+. . + +..+.....+|.+.+++.+|.|++.++ +.+--+|
T Consensus 581 ~v~~~~~~~vd~as~yg~~~le~qg-irl~~~~~---~---~--~s~~~t~d~RL~~~~~e~lp~levs~~--s~P~~ly 649 (960)
T KOG1938|consen 581 NVVNPLIEDVDAASVYGACSLEIQG-IRLNNTKL---D---V--TSSKLTNDTRLNILASEMLPLLEVSFT--SFPQWLY 649 (960)
T ss_pred ccccchhcccchhhhhcccchhhhh-cchhhhcc---c---c--cccccChHHHHHHHHHhhhhhhheeee--cCcchHH
Confidence 66554 122221 2222211 00000000 0 0 011222244688899999999999998 4557799
Q ss_pred cccEEEEEEEEEeccccccceEEEEEecCCCc-------ceEEEe-cc-------------ccccccCCCCCCEEEEEEE
Q 045708 715 EGEIRDVWISLANAGTVPVEQAHISLSGKNQD-------SIISIA-SE-------------TLKSALPLKPGAEVIIPVT 773 (1196)
Q Consensus 715 eGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~-------~i~~~e-~e-------------~~~~~~~I~PG~s~t~~i~ 773 (1196)
+||.+.+.++++|.|.+|+..+.+..++...+ .....+ .+ ..+.+..+.+|++..+++|
T Consensus 650 agq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n~s~~~~~~~~a~i~~~~t~r~~~~s~~~~d~~l~g~r~rr~alW 729 (960)
T KOG1938|consen 650 AGQAREVLLELRNLSPCPAISVDLAASWPYFAVLENESHRKGKMNAANISQQETTRFESGSGSDEDIVLDGGRRRRAALW 729 (960)
T ss_pred HHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhcccccccccccCHhhhhhhhhhhhccccCCCcccccCCCceeeeeee
Confidence 99999999999999999998888877664111 011111 11 1245678999999999999
Q ss_pred EEE
Q 045708 774 LKA 776 (1196)
Q Consensus 774 v~g 776 (1196)
+++
T Consensus 730 ~r~ 732 (960)
T KOG1938|consen 730 FRL 732 (960)
T ss_pred Eec
Confidence 999
No 4
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=99.23 E-value=8.5e-10 Score=131.69 Aligned_cols=298 Identities=15% Similarity=0.128 Sum_probs=186.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEEEEecCCCCccc----cC-------C--CCCCcEEEe--------CCCCccchh
Q 045708 102 SSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLE----EG-------G--KKGDNLIMF--------PPADQQTQE 160 (1196)
Q Consensus 102 ~~~dl~~~~~~~~~lk~~YP~alv~rclvFd~~~~~~~----~~-------~--~~~~~lv~~--------P~~~~~~~~ 160 (1196)
+..+.....+-|+.+|..|+.. -++.+-++....... +. . .-.+.+.-+ ...+ ..-.
T Consensus 50 ~~~~~~~~~~~~~~~k~~~g~~-~c~lL~ins~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~L~-~~d~ 127 (414)
T PF12739_consen 50 DGDDEEDAQALFESMKSTFGVC-NCHLLRINSSRSPSNAPGDDDSVPLPPDPWSSALEELYRISSSSISHGCCLS-EEDV 127 (414)
T ss_pred CcchhHHHHHHHHHHHHHcCCC-cceEEEecccCCCccccccccccCCCCCcccchhhhhcccccccCcccccCC-HHHH
Confidence 4455677778899999999874 344444432211100 00 0 000000001 1111 2224
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhc---------cCccc---cCCCCCCCC-----CCc-----H--HHHhhhhhcc
Q 045708 161 FHLQTMMQDIAA-SLLMEFEKWVLRAES---------AGTIL---KTPLDSQAS-----LSS-----E--EVIKAKKRRL 215 (1196)
Q Consensus 161 ~~l~TvmcDi~~-~lL~~le~~~~s~~s---------~~sil---~tpl~s~~~-----lss-----d--e~~r~kkR~~ 215 (1196)
..++++|.||+. .++-.||+.+..+.. .+.++ +..+.+.+. .++ . ...-+.+-..
T Consensus 128 ~~i~~fv~efv~~~liP~mEr~i~~lnd~v~~~RKgi~~~l~~~skk~f~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~S~ 207 (414)
T PF12739_consen 128 NSIRDFVREFVTQSLIPHMERKIRQLNDQVASPRKGITNRLFSASKKWFGSSKSSSSSSSSSPSSSSYNPSQNYYSADSP 207 (414)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcccchhhHHHHHHHhccCCCCCccccccccccCCCCcccCccCCCCh
Confidence 678999999976 677778876644321 11111 222221110 000 0 0012344455
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHh
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYR 294 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ 294 (1196)
--|.+.+||+++|.|+|.-|+..|..+...++.++-|+++|+|+||++ |++|...... ....-+++...+++|+..|.
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~-~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSIS-AKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCc-cccccccHHHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999999999997 5555533211 00112466677999999999
Q ss_pred hcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCC-CCCCHHHHHHHHHHHHHHh--c----cCCc
Q 045708 295 KSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAK-SLIDASDRLILYIEIARLF--G----TLDY 367 (1196)
Q Consensus 295 ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~-~ll~~~dqi~i~~~lA~vy--~----~LGf 367 (1196)
++..++ .+.....+.|++-.+.++...+...+++..++++...-+ ..+.+...+-++-.+|..| - ...+
T Consensus 287 ~~~~~~----~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPR----CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccc----cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 964321 111125678999999999988888888888887764421 1222233666777777777 2 3356
Q ss_pred ---hhhHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHhhcCccc
Q 045708 368 ---QRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQG 409 (1196)
Q Consensus 368 ---~RK~AF~lR~l~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~ 409 (1196)
.||+||++-+++..+..+.+...+..||.. ++..|.-..
T Consensus 363 ~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~---a~~vY~~~~ 404 (414)
T PF12739_consen 363 LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQ---ALQVYEGKG 404 (414)
T ss_pred chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---HHHHhCCCC
Confidence 899999999999999888877766566644 788886433
No 5
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=98.92 E-value=8.2e-06 Score=101.23 Aligned_cols=467 Identities=16% Similarity=0.223 Sum_probs=246.7
Q ss_pred EEecCeEEEEEEEECCCcceEEEeEEEEEeecceeee-----------------------eeeeEEECCCCeeEEEEEEE
Q 045708 574 WVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDA-----------------------FPISVELPPNSSKVITLSGI 630 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes-----------------------~~~si~L~P~S~~~I~Lsg~ 630 (1196)
..+||++++.|.|.+....+|.+++|++.-+|..+.. ....+.|.|+.++.+.+.+.
T Consensus 23 ~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~ 102 (554)
T PF07919_consen 23 GKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFV 102 (554)
T ss_pred ccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEe
Confidence 6799999999999999999999999999998753221 12358999999999999999
Q ss_pred eCe---eeeEEEceEEEEEec--ccccc--cccchhhhhhhhccCCcccCC-ccccCCCCccCc-CCceEEEeCCCCcEE
Q 045708 631 PTS---VGPVTIPGCTVHCFG--VITEH--IFRDVDNLLLGAAQGLVLSDP-FRCCGSAKLKNV-SVPNISVVPPLPLLV 701 (1196)
Q Consensus 631 P~~---~G~L~I~G~~~~v~g--~~~e~--~f~~~~~~~~~~~k~~~~~~~-~r~~~~~~~~~~-~~l~i~VIp~qP~L~ 701 (1196)
|++ .|.+.|.++..++.. +.-.. .+.... .....+... .......+.+.. ..-.+.|.|.=|.+.
T Consensus 103 ~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~ 176 (554)
T PF07919_consen 103 PREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSS------SSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVS 176 (554)
T ss_pred ccccccCCcEEEEEEEEEEecCeEEEEEEecccccc------ccccccccccCCcceeeeccCCCCCCEEEEECCCCCeE
Confidence 999 999999999999871 11011 111000 000000000 000000000111 356799999999999
Q ss_pred EEeeCCCcceEEecccEEEEEEEEEeccccccce-E-EEEEe-------cCCCcceE--EEecc----c--cc-cccCCC
Q 045708 702 SNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQ-A-HISLS-------GKNQDSII--SIASE----T--LK-SALPLK 763 (1196)
Q Consensus 702 i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~-l-~~sf~-------d~~~~~i~--~~e~e----~--~~-~~~~I~ 763 (1196)
+++. ...--.|.||...+.|++.|..+.+.+. + ...++ ......+. .++.+ . .. .-..|.
T Consensus 177 I~~~--~~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~ 254 (554)
T PF07919_consen 177 IKLP--NHKPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELA 254 (554)
T ss_pred EEeC--CCCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCccceecccccccccchhccCcccccCC
Confidence 9984 4556789999999999999999766542 2 22231 11112222 22111 1 11 124689
Q ss_pred CCCEEEEEEEEEEcccCCCCccccccccccCCcccccccCCCCeEEEEecc--ccCCCCCCCCCCCeeEEEeeEEEEEEc
Q 045708 764 PGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAG--LLANSEDQSAVPPGRRLVLPLQICVLQ 841 (1196)
Q Consensus 764 PG~s~t~~i~v~g~k~g~~~~~~~~~~~~~~~~~~~~k~~t~~~i~i~Y~~--~~g~~~~~~~~~~~R~l~~pl~vtV~~ 841 (1196)
+|++.+.++.++..++|-.. -.|.+.|.- . ++.. ..+..+.. +.+.+..
T Consensus 255 ~~~s~~~~l~i~~~~~~~~~----------------------L~i~~~Y~l~~~-~~~~--~~i~~~~~----~~l~~~~ 305 (554)
T PF07919_consen 255 PGSSITVTLYIRTSRPGEYE----------------------LSISVSYHLDVE-SDPE--TPISKTKT----VQLPVIN 305 (554)
T ss_pred CCCcEEEEEEEEeCCceeEE----------------------EEEEEEEEEecC-CCCc--eeEEEeEE----EeeeEEc
Confidence 99999999999964555321 147777753 2 2221 11111222 3444444
Q ss_pred ceEEEeeeeecCCCCccccCCCccccccccccCCccccCCccc-ccceeecCCCCCcceeEEEeeecCCCCceEEEE-EE
Q 045708 842 GLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRM-DKLMKIDPFRGSWGLRFLELELSNPTDVVFEIS-VT 919 (1196)
Q Consensus 842 sle~~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~w~l~~l~l~l~N~~~~~f~v~-~~ 919 (1196)
-.++. .++.|.-.+... .+|.....+........++.... +.. ........||| ..++.|-.+.+.+|. ++
T Consensus 306 PF~~~-y~~~~~~~~~~~--~~p~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l---~~~i~s~a~~~L~I~~~~ 378 (554)
T PF07919_consen 306 PFEAN-YDFSPRFHPDPW--DMPSPFDVDGSSDFQTLNPEPLTRDGI-LSVGLNQPWCL---NSDIESFAPEPLEIEDIS 378 (554)
T ss_pred CEEee-eeEEeeeccCCc--cCCcccccccccccccccccccccccc-cccccCCCeEE---EccceecCCCceEEEEEE
Confidence 44322 355554433321 22444444331111100000000 000 00111224766 345554444444442 44
Q ss_pred EeecCCCCCCCCCCCCCCCccCccceeeCCCCceEEEEe--ecccccCCCCCCceeecccCCCCCCCCcccccccccHHH
Q 045708 920 VKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIP--LEHFKLPILDGSFFVKDMQSNGTSGSRSSSFSEKNTKAE 997 (1196)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~rvl~p--~~~~~lp~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~e 997 (1196)
++..+...+...+-..++....-....+.++.++.--.. +.-+++... ..|+
T Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~---------------~~~~----------- 432 (554)
T PF07919_consen 379 LEVLSSNGGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLD---------------DRRN----------- 432 (554)
T ss_pred EEEecCCCceeeeeccccccCCCccceeCccccccccccccccccccccc---------------cCcc-----------
Confidence 554443332111111111000001223333333322211 111111110 0111
Q ss_pred HHHHHHHHhhheeEEEec-CCccceeee-hHHHHHHHHhhhhhhhccCCcceeeEEEeecCCcccccCCCCCCCCCCCCc
Q 045708 998 LNASIRNLISRIKVRWQS-GRNSSGELN-IKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGS 1075 (1196)
Q Consensus 998 ~~~~~~~l~~~i~~~w~~-~~~~~g~l~-~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1196)
.-++-.+.++|+- ..++++..+ .+ |.---+. +...|+.+...+ -..
T Consensus 433 -----~~~~g~~~I~WrR~~~~s~~~~~~t~------l~lP~~~-v~~~~~~v~~~~--------------------p~~ 480 (554)
T PF07919_consen 433 -----VTLLGSLVIKWRRNSSNSSDPVVTTP------LPLPRVN-VPSSPLRVLASV--------------------PPS 480 (554)
T ss_pred -----ceeEEEEEEEEEECCCCCCCceEEEE------eecCceE-ccCCCcEEEEec--------------------CCc
Confidence 1234578999996 233323211 00 0000000 001122221111 122
Q ss_pred ceeecceeeEEEEecCchhcccceeeeeeccCCCccccCCCCCcEEecccccccccccCCCCceeEEEEEEEEecceEEE
Q 045708 1076 VLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTL 1155 (1196)
Q Consensus 1076 ~~~~~~~~~~v~v~n~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 1155 (1196)
..+++.++|.+.|+|+|...+...+.+ |.+. .|+|+|.-|. ...|.|+.....+|-++.|+.|.+.+
T Consensus 481 ~~~~~~~~l~~~I~N~T~~~~~~~~~m-----------e~s~-~F~fsG~k~~-~~~llP~s~~~~~y~l~pl~~G~~~l 547 (554)
T PF07919_consen 481 AIVGEPFTLSYTIENPTNHFQTFELSM-----------EPSD-DFMFSGPKQT-TFSLLPFSRHTVRYNLLPLVAGWWIL 547 (554)
T ss_pred cccCcEEEEEEEEECCCCccEEEEEEE-----------ccCC-CEEEECCCcC-ceEECCCCcEEEEEEEEEccCCcEEC
Confidence 457888999999999999999888875 5554 5999999976 77799999999999999999998743
No 6
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.24 E-value=0.34 Score=55.28 Aligned_cols=147 Identities=20% Similarity=0.108 Sum_probs=101.3
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhhc
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRKS 296 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks 296 (1196)
+...-|+.|-++|+|.+|...|..|++...+.+|...-|.+++-.+ |..-. + +.+....+..|+.+|.+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~------~---~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG------D---PDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT------T---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh------C---HHHHHHHHHHHHHHHHhc
Confidence 4445678888889999999999999999888888888888888653 33222 1 246667899999999987
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHhhc-cchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHH
Q 045708 297 FIPDNAQRVSPLSFELEATLKLARFLCRR-ELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFS 375 (1196)
Q Consensus 297 ~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~-~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~l 375 (1196)
+.+ .-..++..++|+++-.. +...++++.+.+|...-...-.......++..+|.+|..+|-..++.=+.
T Consensus 108 G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 108 GRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp T-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 631 12367888999998877 67778888888877551111134667788899999999999666665555
Q ss_pred HHHHHHH
Q 045708 376 RQVAQLY 382 (1196)
Q Consensus 376 R~l~~~l 382 (1196)
.+++..+
T Consensus 179 e~~~~~~ 185 (282)
T PF14938_consen 179 EEVAKKC 185 (282)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 5544443
No 7
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.032 Score=70.62 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHh----hccCCCCCCCHHHHHHHH
Q 045708 280 EEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTS----AADGAKSLIDASDRLILY 355 (1196)
Q Consensus 280 ~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~----a~~~~~~ll~~~dqi~i~ 355 (1196)
+.+.+.+......|+|+.. .....++.+.+.+++|..-+.+.....|... .+.....+|+.+.|.++|
T Consensus 415 e~vie~ltn~ad~~~ks~~--------s~~~~~~iv~~~~r~L~~i~~s~k~~~F~r~~~~kyl~l~n~~m~~r~q~qi~ 486 (1235)
T KOG1953|consen 415 EAVIEQLTNRADGQHKSSL--------SIRERCRIVGAMARMLGSIGFSRKRVKFLRELVSKYLSLTNVLMETRRQNQIK 486 (1235)
T ss_pred HHHHHHHHhhhcchhhccc--------chHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 3444445555555555431 1123456677777777654444333333322 222223466668899999
Q ss_pred HHHHHHhccCCchhhHHHHHHHHHHHHHh-hcccchhhh----HHHHHHHHHhhcCccc
Q 045708 356 IEIARLFGTLDYQRKAAFFSRQVAQLYLQ-QENRSAAIC----AMQVLAMTTKAYRVQG 409 (1196)
Q Consensus 356 ~~lA~vy~~LGf~RK~AF~lR~l~~~lv~-~~~~~~~~s----~~~lL~~~~~~Ygi~~ 409 (1196)
+++|.||..+||.||+|||+|+.+.-.+. -.++-.+.. .+..|-.+++.||...
T Consensus 487 s~~a~myre~g~~rkqaf~~rlsv~~~L~~T~~~~~~~~dyKt~~~~l~~lLe~~g~e~ 545 (1235)
T KOG1953|consen 487 STMAGMYREVGASRKQAFFKRLSVCNILPLTSEICQEYGDYKTDGSLLNPLLEKWGSEA 545 (1235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhccCccccccHHHHHHHHHhccccc
Confidence 99999999999999999999998766332 222222223 3455677888888654
No 8
>COG1470 Predicted membrane protein [Function unknown]
Probab=94.76 E-value=1.7 Score=52.09 Aligned_cols=161 Identities=21% Similarity=0.266 Sum_probs=104.8
Q ss_pred cceeEEecCeEEEEEEEECCCcceEEEeEEEEEeec------ceeee---eeeeEEECCCCeeEEEEEEEeCee---eeE
Q 045708 570 QELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHS------GNFDA---FPISVELPPNSSKVITLSGIPTSV---GPV 637 (1196)
Q Consensus 570 ~~~~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teG------v~Fes---~~~si~L~P~S~~~I~Lsg~P~~~---G~L 637 (1196)
..+....++.+.|.|++.|=..-+.+. .|.-.| +.|.. ...++.|.|+.++.++|.++|-.. |+.
T Consensus 276 ~~~~i~~~~t~sf~V~IeN~g~~~d~y---~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 276 IYLEISPSTTASFTVSIENRGKQDDEY---ALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred ceeEEccCCceEEEEEEccCCCCCcee---EEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCce
Confidence 457788999999999999998887654 455443 45653 245699999999999999988643 553
Q ss_pred EEceEEEEEec---ccccccccchhhhhhhhccCCcccCCccccCCCCccCcCCceEEEeCCCCcEEEEeeCCCcceEEe
Q 045708 638 TIPGCTVHCFG---VITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILY 714 (1196)
Q Consensus 638 ~I~G~~~~v~g---~~~e~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~l~i~VIp~qP~L~i~~ts~~~~vmLl 714 (1196)
.+. +...+ +.++- .+++++.-.--.. +++..+.--+.+-
T Consensus 353 nv~---I~A~s~s~v~~e~----------------------------------~lki~~~g~~~~~-v~l~~g~~~lt~t 394 (513)
T COG1470 353 NVT---ITASSSSGVTREL----------------------------------PLKIKNTGSYNEL-VKLDNGPYRLTIT 394 (513)
T ss_pred eEE---EEEeccccceeee----------------------------------eEEEEecccccee-EEccCCcEEEEec
Confidence 331 11111 11110 1111111111110 1222123456677
Q ss_pred cccEEEEEEEEEeccccccceEEEEEecCCCcceEEEecccccc-ccCCCCCCEEEEEEEEEE
Q 045708 715 EGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKS-ALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 715 eGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~-~~~I~PG~s~t~~i~v~g 776 (1196)
.||-+++.+.+.|.|+.|+..+.+++.++.. |+-+.=+. --.|+||++.+++++|+.
T Consensus 395 aGee~~i~i~I~NsGna~LtdIkl~v~~Pqg-----Wei~Vd~~~I~sL~pge~~tV~ltI~v 452 (513)
T COG1470 395 AGEEKTIRISIENSGNAPLTDIKLTVNGPQG-----WEIEVDESTIPSLEPGESKTVSLTITV 452 (513)
T ss_pred CCccceEEEEEEecCCCccceeeEEecCCcc-----ceEEECcccccccCCCCcceEEEEEEc
Confidence 8999999999999999999999999987432 32221111 235899999999999999
No 9
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=93.06 E-value=0.29 Score=47.62 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=51.4
Q ss_pred EEecCeEEEEEEEECCCcceEEE-----eEEEEEeecce---eeeeeeeEEECCCCeeEEEEEEEeCeeeeEEEc
Q 045708 574 WVVGEPVQVLVELANPCGFDLRV-----DSIYLSVHSGN---FDAFPISVELPPNSSKVITLSGIPTSVGPVTIP 640 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqNPf~feL~I-----~sI~L~teGv~---Fes~~~si~L~P~S~~~I~Lsg~P~~~G~L~I~ 640 (1196)
.++|+.+++.|+++||+..+|.= .-..+...|+. +........|+|++...+.+.++|...|...+.
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG~~~~l 85 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYGPKQLL 85 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHEEECCE
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEecchhc
Confidence 57999999999999999998776 44444666774 566778899999999999999999999994443
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.52 E-value=0.52 Score=42.45 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=48.0
Q ss_pred cceeeehhHhhhcCChHHHHHHHHHHHHHhccCC-chhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHh
Q 045708 217 RAQKTIGDYCLLAGSPVDANAHYSTALELARLTA-DYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYR 294 (1196)
Q Consensus 217 R~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~-D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ 294 (1196)
+....+|..+...|+|.+|+..|..|+++.+..+ |+...|.++-+++ |...+-.. ++....+.+++.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--------~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY--------EEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhhhc
Confidence 4455689999999999999999999999987765 6667788887775 33333211 233444556665554
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=91.22 E-value=2.6 Score=40.27 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=43.2
Q ss_pred EEecccEEEEEEEEEeccccccceEEEEEecCC-CcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 712 ILYEGEIRDVWISLANAGTVPVEQAHISLSGKN-QDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 712 mLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~-~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
.+.-|+....+|+|+|.|..|..|- +.... ....+..+. ....|+||++.++.+++.+
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~---v~~~~~~~~~~~v~~----~~g~l~PG~~~~~~V~~~~ 73 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFR---VRQPESLSSFFSVEP----PSGFLAPGESVELEVTFSP 73 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEE---EEeCCcCCCCEEEEC----CCCEECCCCEEEEEEEEEe
Confidence 5678999999999999999997543 32222 334555543 2457999999999999993
No 12
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=90.74 E-value=0.75 Score=42.12 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=36.3
Q ss_pred cccEEEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 715 EGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 715 eGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
.||..+++++++|.+..++..+.+++.-+..=. .......+ ..|+||+++++.+.|..
T Consensus 3 ~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~-~~~~~~~~---~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWT-VSASPASV---PSLPPGESVTVTFTVTV 60 (78)
T ss_dssp TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE----EEEEE-----B-TTSEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCceeeEEEEEeCCCCcc-ccCCcccc---ccCCCCCEEEEEEEEEC
Confidence 599999999999999999999999887532111 11111111 27999999999999997
No 13
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.68 E-value=49 Score=37.75 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=96.6
Q ss_pred ChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCch
Q 045708 231 SPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLS 309 (1196)
Q Consensus 231 ~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~ 309 (1196)
+|.+|...|..|+..+|..++|-.-|.|++-.+ |..=+.. ..+....+.+|..+|++.- | .
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--------~~~Aa~~~~~Aa~~~k~~~-~---------~ 91 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--------KFEAAKAYEEAANCYKKGD-P---------D 91 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHTT-H---------H
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhhC-H---------H
Confidence 799999999999999999999998888888764 3322211 1244556888999998861 1 1
Q ss_pred hhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhc
Q 045708 310 FELEATLKLARFLCRRELAKDVVELLTSAADGAKSL-IDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQE 386 (1196)
Q Consensus 310 ~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~l-l~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l~~~lv~~~ 386 (1196)
-.+++.-+.+.++...+....++..+.++-..-... -+..+-+..|..-+.+|..-|-.+..+=+++.++..+++..
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 125677778888888777777777766644331122 35567788999999999999988888888888887775443
No 14
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=88.57 E-value=0.65 Score=43.40 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=39.9
Q ss_pred eeeEEEEecCchhcccceeee------eeccCCCccccCCCCCcEEecc-----ccccc-ccccCCCCceeEEEEEEEEe
Q 045708 1082 TPMEVLVRNNTKEMIKMSLSI------TCRDVAGENCIEGTKPTVLWSG-----VLNEI-TMEVPPLQESKHCFSLYFLV 1149 (1196)
Q Consensus 1082 ~~~~v~v~n~t~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g-----~l~~~-~~~~~~~~~~~~~~~~~~l~ 1149 (1196)
+.+.+.|+|++.+++.+..+= .++|..| +.+|.= -.|.+ ...+.||++.+..+.+-...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g---------~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEG---------KEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT-----------EEEETTTT-------EEEEE-TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCC---------CEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCC
Confidence 457899999999999988773 4444432 334421 12333 56788999999999855554
Q ss_pred --cceEEEEE
Q 045708 1150 --PGEYTLVA 1157 (1196)
Q Consensus 1150 --~g~~~~~~ 1157 (1196)
||+|++.|
T Consensus 73 ~~~G~Y~~~a 82 (82)
T PF12690_consen 73 LSPGEYTLEA 82 (82)
T ss_dssp --SEEEEEEE
T ss_pred CCCceEEEeC
Confidence 99999987
No 15
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=87.38 E-value=18 Score=40.91 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=74.5
Q ss_pred CcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcc--eEEE-eccccc-cccCCCCCCEEEEEEEEEEcccCCCC
Q 045708 708 DGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDS--IISI-ASETLK-SALPLKPGAEVIIPVTLKAWQHGPVD 783 (1196)
Q Consensus 708 ~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~--i~~~-e~e~~~-~~~~I~PG~s~t~~i~v~g~k~g~~~ 783 (1196)
++-=.+|=||++.+.|-+.|.++.+|..+.|+..=.+... -..+ +.+.-. ....|.||++..+.+.--=
T Consensus 5 ~sfG~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~l------- 77 (249)
T PF06159_consen 5 QSFGSIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHEL------- 77 (249)
T ss_pred cccCCEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEe-------
Confidence 3444688999999999999999999999888875433322 2222 111110 1246999999877665543
Q ss_pred ccccccccccCCcccccccCCCCe-EEEEeccccCCCCCCCCCCCeeEEEeeEEEEEEcceEEEeeeeecCC
Q 045708 784 PETVAGKIASGSIGRHVKDVSSPS-LLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSME 854 (1196)
Q Consensus 784 ~~~~~~~~~~~~~~~~~k~~t~~~-i~i~Y~~~~g~~~~~~~~~~~R~l~~pl~vtV~~sle~~~~dilp~~ 854 (1196)
.+.|+|.. ..+.|.-.. .. -...|.++=-....|.+.|+| +-.+..++
T Consensus 78 ----------------kE~G~h~L~c~VsY~~~~-~~-----~g~~~tfRK~ykF~v~~PL~V-ktK~~~~~ 126 (249)
T PF06159_consen 78 ----------------KELGNHTLVCTVSYTDPT-ET-----SGERRTFRKFYKFQVLNPLSV-KTKVYNLE 126 (249)
T ss_pred ----------------eecCceEEEEEEEEecCc-cc-----CCccceEeeeeEEeCCCCcEE-EEEEEecC
Confidence 12236664 788887751 11 024778888889999888854 44444443
No 16
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=86.77 E-value=2.5 Score=39.73 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=45.2
Q ss_pred CcEEEEeeCCCcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEEEEc
Q 045708 698 PLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAW 777 (1196)
Q Consensus 698 P~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g~ 777 (1196)
|-|.+.+. ..+-.+..|+..+++++++|.|..+...+.+.|-.... .+-.. .+ ..|+||++.++.+.+..-
T Consensus 2 pDL~v~~~--~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~-~~~~~---~i---~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 2 PDLTVSIT--VSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGN-SVSTV---TI---PSLAPGESETVTFTWTPP 72 (101)
T ss_dssp --EEE-EE--EC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTE-EEEEE---EE---SEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEe--eCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCc-eeccE---EE---CCcCCCcEEEEEEEEEeC
Confidence 44555333 45667789999999999999999888888887643111 11000 01 478999999999999883
Q ss_pred ccC
Q 045708 778 QHG 780 (1196)
Q Consensus 778 k~g 780 (1196)
.+|
T Consensus 73 ~~G 75 (101)
T PF07705_consen 73 SPG 75 (101)
T ss_dssp S-C
T ss_pred CCC
Confidence 343
No 17
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=86.28 E-value=8.3 Score=44.34 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=61.1
Q ss_pred EEeCCCCcEEEEeeCCCcceEEecccEEEEEEEEEeccccc--cceEEEEEecCCCcceEEEeccccccccCCCCCCEEE
Q 045708 692 SVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVP--VEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVI 769 (1196)
Q Consensus 692 ~VIp~qP~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~p--V~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t 769 (1196)
..+.+-|-..+.+.-+.+...+..|+..++-|.++|.+..| |.++.=+|+.+..-..+.-+.-...-...|+||+++|
T Consensus 74 ~~~~~sP~adt~~~F~~~~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT 153 (285)
T PF03896_consen 74 GELKPSPDADTTILFPKPTKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEAT 153 (285)
T ss_pred ccccccCCceEEEEeccccccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEE
Confidence 44555666655443334478899999999999999999644 5566667765544444555555555567999999999
Q ss_pred EEEEEEE
Q 045708 770 IPVTLKA 776 (1196)
Q Consensus 770 ~~i~v~g 776 (1196)
|++...-
T Consensus 154 ~~YsF~~ 160 (285)
T PF03896_consen 154 FPYSFTP 160 (285)
T ss_pred EEEEEec
Confidence 9999875
No 18
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=84.80 E-value=3 Score=40.16 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=43.4
Q ss_pred EEEEEEEECCCcceEEEeEEE--EEeecceeeeee--eeEEECCCCeeEEEEEEEe
Q 045708 580 VQVLVELANPCGFDLRVDSIY--LSVHSGNFDAFP--ISVELPPNSSKVITLSGIP 631 (1196)
Q Consensus 580 ~ev~VtLqNPf~feL~I~sI~--L~teGv~Fes~~--~si~L~P~S~~~I~Lsg~P 631 (1196)
..+.+.++||-.|++.++++. |..+|..+-.-. ..+.|||+++.++.++.+-
T Consensus 17 ~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 17 IVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred EEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 566788999999999999999 888999887543 4699999999888777643
No 19
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.21 E-value=1.2 Score=34.50 Aligned_cols=31 Identities=32% Similarity=0.331 Sum_probs=25.5
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhccCCc
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARLTAD 251 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D 251 (1196)
.||++|...|+|..|+..|..|+.+.+...|
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 4899999999999999999999977765554
No 20
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.09 E-value=11 Score=44.76 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=88.1
Q ss_pred ccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 045708 214 RLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILH 292 (1196)
Q Consensus 214 ~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~l 292 (1196)
.+||..--+|+-|.+.|.|.+|+.+-.+-+++++.-+|------|.-.+. |-+++.. ++-|+.+
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---------------fe~A~eh 257 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---------------FELAIEH 257 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---------------cHhHHHH
Confidence 68999999999999999999999999999999998888533333333343 5555543 4556666
Q ss_pred HhhcCCCCCCCCCCCchhhHHHHHHHHHHHh-hccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhH
Q 045708 293 YRKSFIPDNAQRVSPLSFELEATLKLARFLC-RRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKA 371 (1196)
Q Consensus 293 Y~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~-~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~ 371 (1196)
|++..+- +..+---..++..|.-++.-+. -.+. ..+.+..++-+-+.-++-+-.-+.+.|-+++.-|..||=+||+
T Consensus 258 YK~tl~L--Aielg~r~vEAQscYSLgNtytll~e~-~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 258 YKLTLNL--AIELGNRTVEAQSCYSLGNTYTLLKEV-QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHH--HHHhcchhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 6654210 0000000123334444443221 1111 1122222222222112222234568999999999999999999
Q ss_pred HHHHHHHHHH
Q 045708 372 AFFSRQVAQL 381 (1196)
Q Consensus 372 AF~lR~l~~~ 381 (1196)
-+|+-+.+..
T Consensus 335 l~fae~hl~~ 344 (639)
T KOG1130|consen 335 LYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHH
Confidence 9987765443
No 21
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.59 E-value=2.4 Score=40.35 Aligned_cols=45 Identities=22% Similarity=0.076 Sum_probs=40.3
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV 263 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~ 263 (1196)
.--+|.++...|.+.+|++.+.||+.++|..+|.-.++-|+-.++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 344788999999999999999999999999999999999988653
No 22
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=79.22 E-value=4.3 Score=37.99 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=32.8
Q ss_pred EEEEEEEEeccccccce-------EEEEEecCCCcceEEEeccc-c---ccccCCCCCCEEEEEEEEEE
Q 045708 719 RDVWISLANAGTVPVEQ-------AHISLSGKNQDSIISIASET-L---KSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 719 ~~f~ItL~N~S~~pV~~-------l~~sf~d~~~~~i~~~e~e~-~---~~~~~I~PG~s~t~~i~v~g 776 (1196)
..+.++++|.|+.+|.. ..|.+.|+....++.|..+- + -....|+||++.++.+++-.
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC
Confidence 36899999999988742 12233344445555555442 2 22478999999999988866
No 23
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.92 E-value=2 Score=32.30 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.3
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.+|..|+..|+|.+|+..|..|+++
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4799999999999999999999975
No 24
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=77.09 E-value=7.3 Score=36.09 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=40.2
Q ss_pred ccEEEEEEEEEeccccccceEEEEEecCCCcceEEEecc-----ccccc-cCCCCCCEEEEEE
Q 045708 716 GEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASE-----TLKSA-LPLKPGAEVIIPV 772 (1196)
Q Consensus 716 GE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e-----~~~~~-~~I~PG~s~t~~i 772 (1196)
.....+.++++|.|..||..+.|.... ...++-.++.. .+++- .+|+||++.+|-+
T Consensus 16 ~~y~qy~v~I~N~~~~~I~~~~i~~~~-l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FGY 77 (80)
T PF09478_consen 16 QTYTQYDVTITNNGSKPIKSLKISIDN-LYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFGY 77 (80)
T ss_pred EEEEEEEEEEEECCCCeEEEEEEEECc-cchhheeEEeccCCEEECCccccccCCCCEEEEEE
Confidence 345889999999999999999999983 22444333331 13442 4899999998865
No 25
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=76.78 E-value=1.4e+02 Score=33.84 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=104.1
Q ss_pred EEecCeEEEEEEEECCCcceEEEeEEEEEee----cc--eee--e-ee---eeEEECCCCeeEEEEEEEeCeeeeEEEce
Q 045708 574 WVVGEPVQVLVELANPCGFDLRVDSIYLSVH----SG--NFD--A-FP---ISVELPPNSSKVITLSGIPTSVGPVTIPG 641 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqNPf~feL~I~sI~L~te----Gv--~Fe--s-~~---~si~L~P~S~~~I~Lsg~P~~~G~L~I~G 641 (1196)
.-+||.....|.+.|.-.-.| .++.+.+| .. .+. . .. ....|.|+...+..+..-=++.|.- |.-
T Consensus 10 iylGEtF~~~l~~~N~s~~~v--~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G~h-~L~ 86 (249)
T PF06159_consen 10 IYLGETFSCYLSVNNDSNKPV--RNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKELGNH-TLV 86 (249)
T ss_pred EeecCCEEEEEEeecCCCCce--EEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeeecCce-EEE
Confidence 568999999999999555544 55555444 22 222 1 11 1246899998888888877788873 345
Q ss_pred EEEEEeccc---cc-ccccchhhhhhhhccCCcccCCccccCCCCccCcCCceEEEeCCCCcEEEEeeC-CCcceEEecc
Q 045708 642 CTVHCFGVI---TE-HIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVG-GDGAIILYEG 716 (1196)
Q Consensus 642 ~~~~v~g~~---~e-~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~l~i~VIp~qP~L~i~~ts-~~~~vmLleG 716 (1196)
|.+...... .+ +.| .+.+.+.|.+++ .++.++.. ..++.. -..
T Consensus 87 c~VsY~~~~~~~g~~~tf------------------------------RK~ykF~v~~PL-~VktK~~~~~~~~~~-~~~ 134 (249)
T PF06159_consen 87 CTVSYTDPTETSGERRTF------------------------------RKFYKFQVLNPL-SVKTKVYNLEDDSSL-SPR 134 (249)
T ss_pred EEEEEecCcccCCccceE------------------------------eeeeEEeCCCCc-EEEEEEEecCCcccc-ccc
Confidence 555443321 01 001 124668887775 44444432 111111 556
Q ss_pred cEEEEEEEEEeccccccceEEEEEecCCCcceEEEeccc-------c------ccccCCCCCCEEEEEEEEEEcccC
Q 045708 717 EIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASET-------L------KSALPLKPGAEVIIPVTLKAWQHG 780 (1196)
Q Consensus 717 E~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~-------~------~~~~~I~PG~s~t~~i~v~g~k~g 780 (1196)
++.-+.+.|+|+|+.|+=.=.+.|.-...-....++.+. . .....|+||++..+=|.|.- +++
T Consensus 135 ~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~-~~~ 210 (249)
T PF06159_consen 135 ERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTP-KPE 210 (249)
T ss_pred eeEEEEEEEEecCCCceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEE-CCc
Confidence 678889999999999987777888643222233333211 1 12356999999999999998 665
No 26
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.17 E-value=13 Score=46.17 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=89.0
Q ss_pred cccceeeehhHhhhcCChHHHHHHHHHHHHHhcc--CCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 045708 215 LARAQKTIGDYCLLAGSPVDANAHYSTALELARL--TADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILH 292 (1196)
Q Consensus 215 ~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~--~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~l 292 (1196)
.....+.+|.+|+-.|+|.+|...|.+|+++... ..|+--.|.+|+-++.+..= -| .. .+..+.+.+|+.+
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~--~G--Kf---~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK--QG--KF---AEAEEYCERALEI 312 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--cC--Ch---HHHHHHHHHHHHH
Confidence 4455668999999999999999999999999986 58888999999988654311 11 11 4777889999999
Q ss_pred HhhcCCCCCCCCCCCchhhHHH-HHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHH--HHHHHHHHHHHhccCC
Q 045708 293 YRKSFIPDNAQRVSPLSFELEA-TLKLARFLCRRELAKDVVELLTSAADGAKSLIDASD--RLILYIEIARLFGTLD 366 (1196)
Q Consensus 293 Y~ks~~p~n~e~~p~l~~~~Ea-~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~d--qi~i~~~lA~vy~~LG 366 (1196)
|.+.... + ++ ++.+ ..-++-.+..++...++...+++++..-...+...+ =..++..+|.+|-..|
T Consensus 313 ~~~~~~~-~----~~---~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 313 YEKLLGA-S----HP---EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHhhcc-C----hH---HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 9984321 0 01 1111 222333334445555566666655544221222112 2578899999998887
No 27
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=72.89 E-value=48 Score=41.33 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=101.7
Q ss_pred ccccceeeehhHhhhcCChHHHHHHHHHHHHHhcc--CCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHH
Q 045708 214 RLARAQKTIGDYCLLAGSPVDANAHYSTALELARL--TADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVIL 291 (1196)
Q Consensus 214 ~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~--~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~ 291 (1196)
..+|....+|..|-..|+|..|...|..|+.++++ ..+++=.+..+.-++-+ +++ .++ ..+....|++|++
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~-y~~-~~k-----~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALV-YRS-LGK-----YDEAVNLYEEALT 269 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHH-HHH-hcc-----HHHHHHHHHHHHH
Confidence 46677777999999999999999999999999754 46777777777733211 111 111 0244445666666
Q ss_pred HHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCC--CCCCHHHHHHHHHHHHHHhccCCchh
Q 045708 292 HYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAK--SLIDASDRLILYIEIARLFGTLDYQR 369 (1196)
Q Consensus 292 lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~--~ll~~~dqi~i~~~lA~vy~~LGf~R 369 (1196)
.+.....+.+ |. .+.+...+|..+..++...|+-..+-+|..+-. ......+=...++.++.+|...+=.=
T Consensus 270 i~e~~~G~~h----~~---va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 270 IREEVFGEDH----PA---VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHhcCCCC----HH---HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 6665543222 22 246778888888877777776666666554411 11222344567788888888887777
Q ss_pred hHHHHHHHHHHHHH
Q 045708 370 KAAFFSRQVAQLYL 383 (1196)
Q Consensus 370 K~AF~lR~l~~~lv 383 (1196)
-+-++++.++..+.
T Consensus 343 ea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 343 EAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777665
No 28
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.66 E-value=4.1 Score=30.32 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHh
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~l 246 (1196)
.+|..++..|+|.+|+++|..|+.+-
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 47999999999999999999999764
No 29
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=71.55 E-value=27 Score=35.87 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=50.6
Q ss_pred cceEEec--ccEEEEEEEEEeccccccce--EEEEEecCCCcceEEEec---cccc----cccCCCCCCEEEEEEEEEE
Q 045708 709 GAIILYE--GEIRDVWISLANAGTVPVEQ--AHISLSGKNQDSIISIAS---ETLK----SALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 709 ~~vmLle--GE~~~f~ItL~N~S~~pV~~--l~~sf~d~~~~~i~~~e~---e~~~----~~~~I~PG~s~t~~i~v~g 776 (1196)
..+.-.+ +....++.+|+|.++.+..+ |.+++.|.....++++-. |.+. ....|+||+++.|.+.+..
T Consensus 58 ~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 58 SDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred eeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 3444455 66788899999999866665 777888877777776643 2332 2567999999999999987
No 30
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.13 E-value=15 Score=39.66 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCcEEEEeeCCCcceEEecccEEEEEEEEEeccccccceEEEEEec-CCCcceEEEecccc-ccccCCCCCCEEEEEEEE
Q 045708 697 LPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSG-KNQDSIISIASETL-KSALPLKPGAEVIIPVTL 774 (1196)
Q Consensus 697 qP~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d-~~~~~i~~~e~e~~-~~~~~I~PG~s~t~~i~v 774 (1196)
.|.|-++-. -..-.+.+|+..++++++.|.|+.+.- .+++.| +-.++-+++-.... ..--.|+||+.++..+.+
T Consensus 20 ~a~llv~K~--il~~~~v~g~~v~V~~~iyN~G~~~A~--dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv 95 (181)
T PF05753_consen 20 PARLLVSKQ--ILNKYLVEGEDVTVTYTIYNVGSSAAY--DVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVV 95 (181)
T ss_pred CcEEEEEEe--eccccccCCcEEEEEEEEEECCCCeEE--EEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEE
Confidence 455544322 123477899999999999999998764 455566 33334454433221 112379999999999999
Q ss_pred EEcccCC
Q 045708 775 KAWQHGP 781 (1196)
Q Consensus 775 ~g~k~g~ 781 (1196)
+..+.|.
T Consensus 96 ~p~~~G~ 102 (181)
T PF05753_consen 96 RPKKSGY 102 (181)
T ss_pred eeeeeEE
Confidence 9966775
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=69.65 E-value=53 Score=34.31 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=14.4
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.+|.++...|++.+|++.|..++..
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555555566666666666655554
No 32
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=68.73 E-value=22 Score=35.78 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=47.3
Q ss_pred cceEEecccEEEEEEEEEeccccccceEEEEEecCC--CcceEEEecc--------------c--cccccCCCCCCEEEE
Q 045708 709 GAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKN--QDSIISIASE--------------T--LKSALPLKPGAEVII 770 (1196)
Q Consensus 709 ~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~--~~~i~~~e~e--------------~--~~~~~~I~PG~s~t~ 770 (1196)
-.+.+=-|+++++.|++.|.|+-++.+ .+++.+-. ..-++.|... + .+....|+||++.++
T Consensus 19 FdL~~~P~q~~~l~v~i~N~s~~~~tv-~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V 97 (121)
T PF06030_consen 19 FDLKVKPGQKQTLEVRITNNSDKEITV-KVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTV 97 (121)
T ss_pred EEEEeCCCCEEEEEEEEEeCCCCCEEE-EEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEE
Confidence 456677899999999999999988843 44554422 2334444211 1 234589999999999
Q ss_pred EEEEEE
Q 045708 771 PVTLKA 776 (1196)
Q Consensus 771 ~i~v~g 776 (1196)
+++|..
T Consensus 98 ~~~i~~ 103 (121)
T PF06030_consen 98 TFTIKM 103 (121)
T ss_pred EEEEEc
Confidence 999998
No 33
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=68.01 E-value=37 Score=31.64 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=46.0
Q ss_pred eEEecCeEEEEEEEECCCcceEEEeEEEEEeecceeeeeeeeE-EECCCCeeEEEEEEEeCeeeeEEEc
Q 045708 573 IWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISV-ELPPNSSKVITLSGIPTSVGPVTIP 640 (1196)
Q Consensus 573 ~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes~~~si-~L~P~S~~~I~Lsg~P~~~G~L~I~ 640 (1196)
....|+.++|.++++|-=.-...=-.+.+..+|... ....+ .|+|+.+.++.+..++...|...|.
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~ 80 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV--STVTIPSLAPGESETVTFTWTPPSPGSYTIR 80 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--EEEEESEB-TTEEEEEEEEEE-SS-CEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee--ccEEECCcCCCcEEEEEEEEEeCCCCeEEEE
Confidence 478999999999999974444444455566666544 33345 8899999999999999988988754
No 34
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.07 E-value=6.3 Score=30.52 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.0
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhccC
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELARLT 249 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~ 249 (1196)
-.+|.+|...|+|.+|+..|.+|+++.+..
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 357999999999999999999999988764
No 35
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=64.53 E-value=87 Score=33.48 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=70.1
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhh-ccCCCchhhHHHHHHHHHHHHHHHhhc
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVD-RMGQKDAVLEEEVKFRYNSVILHYRKS 296 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~-~~~~~~~~~~~ei~~~~~~ai~lY~ks 296 (1196)
...-+|++|+..|.+..|++.|..+.+-+-. .+.-+++..+.+-+. .++ | +..+...++.|-.+..+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------~~~~id~~l~~irv~i~~~--d---~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS------PGHKIDMCLNVIRVAIFFG--D---WSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHHhC--C---HHHHHHHHHHHHHHHhcc
Confidence 3446799999999999999999996653322 233445443221111 011 1 134555566666666653
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHh--hccchHHHHHHHHhhccCC-----CCCCCHHHHHHHHHHHHHH
Q 045708 297 FIPDNAQRVSPLSFELEATLKLARFLC--RRELAKDVVELLTSAADGA-----KSLIDASDRLILYIEIARL 361 (1196)
Q Consensus 297 ~~p~n~e~~p~l~~~~Ea~Lr~a~~L~--~~~~~~ei~~~L~~a~~~~-----~~ll~~~dqi~i~~~lA~v 361 (1196)
. .-+...-|+.+.-|. .+...+++++.+..+.+.. .++++ .+.+.+|.++..+
T Consensus 107 ~-----------d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s-~~d~a~Y~~l~aL 166 (177)
T PF10602_consen 107 G-----------DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELIS-YNDFAIYGGLCAL 166 (177)
T ss_pred c-----------hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcC-HHHHHHHHHHHHH
Confidence 2 123344455544332 4555678888888776652 34555 4667788776554
No 36
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=63.91 E-value=24 Score=41.62 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=44.9
Q ss_pred EEEeCCCC-cEEEEeeCCCcceEEecccEEEEEEEEEeccccccceEEEE-----EecCC-CcceEEEeccc-------c
Q 045708 691 ISVVPPLP-LLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHIS-----LSGKN-QDSIISIASET-------L 756 (1196)
Q Consensus 691 i~VIp~qP-~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~s-----f~d~~-~~~i~~~e~e~-------~ 756 (1196)
|+=+|..| .+.++.. .+.-=..|-+-+++++++|.|+.||..=.|. |-++. ...--.|..++ +
T Consensus 239 i~pl~~~~~~V~~~v~---~A~Y~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~v 315 (381)
T PF04744_consen 239 IKPLPVPPNSVKVKVT---DATYRVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSV 315 (381)
T ss_dssp -----SS-SSEEEEEE---EEEEESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEE
T ss_pred cccCCCCCCceEEEEe---ccEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCccee
Confidence 33344333 3555654 4566667888999999999999999887765 33321 11111222222 2
Q ss_pred ccccCCCCCCEEEEEEEEEE
Q 045708 757 KSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 757 ~~~~~I~PG~s~t~~i~v~g 776 (1196)
....+|+|||+.++.++++.
T Consensus 316 s~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 316 SDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp S--S-B-TT-EEEEEEEEE-
T ss_pred CCCCCcCCCceEEEEEEeeh
Confidence 44679999999999999986
No 37
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=61.44 E-value=45 Score=38.46 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=84.5
Q ss_pred eeeeeEEECCCCeeEEEEEEEeCeeeeEEEceEEEEEecccccc-cccc--hhhhhhhhccCCcccCCccccCCCCccCc
Q 045708 610 AFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEH-IFRD--VDNLLLGAAQGLVLSDPFRCCGSAKLKNV 686 (1196)
Q Consensus 610 s~~~si~L~P~S~~~I~Lsg~P~~~G~L~I~G~~~~v~g~~~e~-~f~~--~~~~~~~~~k~~~~~~~~r~~~~~~~~~~ 686 (1196)
++|..+.+||++-..|+|.=-|-.+|.=-=.-+.++.|-..+++ +... .-.+. .+|-. .-|
T Consensus 110 AyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~--IRKvq--yAP------------ 173 (402)
T KOG3865|consen 110 AYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLV--IRKVQ--YAP------------ 173 (402)
T ss_pred CCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeee--eeeee--ecC------------
Confidence 46778999999999999988888888643334444544332221 1000 00000 00000 000
Q ss_pred CCceEEEeCCCCcEEEE----eeC-------CCcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcceEEE---e
Q 045708 687 SVPNISVVPPLPLLVSN----VVG-------GDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISI---A 752 (1196)
Q Consensus 687 ~~l~i~VIp~qP~L~i~----~ts-------~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~---e 752 (1196)
+ + .-+||...+. ++. +-.--+-|.||...+.|.++|.|+-.|+-|++.+..-+.-.+|+- .
T Consensus 174 --~--~-~GpqP~~~v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy~ 248 (402)
T KOG3865|consen 174 --L--E-PGPQPSAEVSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQYK 248 (402)
T ss_pred --C--C-CCCCchhHhhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEeccccc
Confidence 0 0 1134443321 110 012336799999999999999999999999999876333333321 1
Q ss_pred c----cccccccCCCCCCEEEEEEEEEE
Q 045708 753 S----ETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 753 ~----e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
. +...+-.++.||.+.+=.+++.-
T Consensus 249 ~~VA~~E~~eGc~v~Pgstl~Kvf~l~P 276 (402)
T KOG3865|consen 249 KPVAMEETDEGCPVAPGSTLSKVFTLTP 276 (402)
T ss_pred ceeeeeecccCCccCCCCeeeeeEEech
Confidence 1 11234579999999988888765
No 38
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=61.04 E-value=30 Score=43.32 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCCcceeecceeeEEEEecCchhcccceeeeeeccCCCcc----ccCCCCCcEEecccc-------cccccccCCCCcee
Q 045708 1072 PKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGEN----CIEGTKPTVLWSGVL-------NEITMEVPPLQESK 1140 (1196)
Q Consensus 1072 ~~~~~~~~~~~~~~v~v~n~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l-------~~~~~~~~~~~~~~ 1140 (1196)
.+++.+.+|++++++.|+|+-.+.....+.+.+.. .+.. +....-..+-|++-. +.....++++++.+
T Consensus 182 ~~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~l~~~~s~~ 260 (554)
T PF07919_consen 182 HKPPALTGEFYPIPITISNNEDEEASGVLEVRLLH-PSQLGVSSEETEDLSQVNWDSDKDDEPLFLGIPLGELAPGSSIT 260 (554)
T ss_pred CCCCeEcCCEEEEEEEEEcCCCccceeEEEEEEec-ccccccccccCccceecccccccccchhccCcccccCCCCCcEE
Confidence 45778999999999999999999999888765541 1112 222221233466633 22345778999999
Q ss_pred EEEEEEEEecceEEEEEEEEee
Q 045708 1141 HCFSLYFLVPGEYTLVAAAVID 1162 (1196)
Q Consensus 1141 ~~~~~~~l~~g~~~~~~~~~~~ 1162 (1196)
+.+-+....+|+|.|.-++.-.
T Consensus 261 ~~l~i~~~~~~~~~L~i~~~Y~ 282 (554)
T PF07919_consen 261 VTLYIRTSRPGEYELSISVSYH 282 (554)
T ss_pred EEEEEEeCCceeEEEEEEEEEE
Confidence 9999999999999998877763
No 39
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.24 E-value=96 Score=35.14 Aligned_cols=74 Identities=24% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCchhhHH-HhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhcc
Q 045708 249 TADYFWYA-GALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRE 326 (1196)
Q Consensus 249 ~~D~LWlA-sALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~ 326 (1196)
.|-.+||| +|.|+.+ .+-=++.| +|+...++.|..+|-.+++|+.+ .-+.=|.|+.+-..
T Consensus 63 nnrslfhAAKayEqaamLake~~kl--------sEvvdl~eKAs~lY~E~GspdtA---------AmaleKAak~lenv- 124 (308)
T KOG1585|consen 63 NNRSLFHAAKAYEQAAMLAKELSKL--------SEVVDLYEKASELYVECGSPDTA---------AMALEKAAKALENV- 124 (308)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHhCCcchH---------HHHHHHHHHHhhcC-
Confidence 35556765 5999874 22223333 57777788899999888765543 34556777766432
Q ss_pred chHHHHHHHHhhcc
Q 045708 327 LAKDVVELLTSAAD 340 (1196)
Q Consensus 327 ~~~ei~~~L~~a~~ 340 (1196)
.-.+++++.++++.
T Consensus 125 ~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 125 KPDDALQLYQRALA 138 (308)
T ss_pred CHHHHHHHHHHHHH
Confidence 23456666666543
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=59.72 E-value=37 Score=43.12 Aligned_cols=43 Identities=28% Similarity=0.270 Sum_probs=29.3
Q ss_pred cceeeehhHhhhcCChHHHHHHHHHHHHHhcc-CCchhhHHHhH
Q 045708 217 RAQKTIGDYCLLAGSPVDANAHYSTALELARL-TADYFWYAGAL 259 (1196)
Q Consensus 217 R~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~-~~D~LWlAsAL 259 (1196)
.....+|.+++..|++.+|+..|..|+++-.. ...|+.+|.++
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 34567788999999999999999999875432 22334444433
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=57.88 E-value=39 Score=31.91 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=54.6
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHHhccC----CchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcC
Q 045708 222 IGDYCLLAGSPVDANAHYSTALELARLT----ADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSF 297 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~lk~~----~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~ 297 (1196)
+|..++..|+|.+|++.|..++...... ..++|+|.++.. .+ ++.+|+..|.+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~------------~~~~A~~~~~~~~ 66 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA---------QG------------KYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh---------hc------------cHHHHHHHHHHHH
Confidence 5788899999999999999998643211 123344443331 11 1445555555432
Q ss_pred C--CCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccC
Q 045708 298 I--PDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADG 341 (1196)
Q Consensus 298 ~--p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~ 341 (1196)
. |.+ + ...++.+.++..+...+...++.+.+.++...
T Consensus 67 ~~~p~~-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 67 KKYPKS-----P--KAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHCCCC-----C--cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 1 111 1 12367777888887777777777776665443
No 42
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.49 E-value=14 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=25.1
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhc
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELAR 247 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk 247 (1196)
-.+|.++...|++..|+++|.+|+++-+
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4579999999999999999999998765
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=55.32 E-value=3.5e+02 Score=30.54 Aligned_cols=206 Identities=18% Similarity=0.184 Sum_probs=113.3
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCC
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFI 298 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~ 298 (1196)
+..+|-=||..|++.-|.+.+..|++.-.+.-| -|++-|. +-.+.|+ ...|-.-|+|+.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~-a~~~~A~-------~Yq~~Ge------------~~~A~e~YrkAls 97 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL-AHLVRAH-------YYQKLGE------------NDLADESYRKALS 97 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-HHHHHHH-------HHHHcCC------------hhhHHHHHHHHHh
Confidence 345677799999999999999999986664322 2443322 1122222 2223344555442
Q ss_pred --CCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCC--CCCCHHHHHHHHHHHHHHhccCCchhhHHHH
Q 045708 299 --PDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAK--SLIDASDRLILYIEIARLFGTLDYQRKAAFF 374 (1196)
Q Consensus 299 --p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~--~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~ 374 (1196)
|.|. +..=-+..|||+++...++...+-+|...+. +..++-+-+-+|. +..=.+.++...+
T Consensus 98 l~p~~G----------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca-----l~~gq~~~A~~~l 162 (250)
T COG3063 98 LAPNNG----------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA-----LKAGQFDQAEEYL 162 (250)
T ss_pred cCCCcc----------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH-----hhcCCchhHHHHH
Confidence 3332 2333488999999998999999998875532 1222234443332 1233455666666
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHhhcCccccccccccccccccCCCccCCCCccccchhhhhhcccccchHHHHH
Q 045708 375 SRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMV 454 (1196)
Q Consensus 375 lR~l~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~g~~~~d~~~~~~~s~~~v~~~fg~gW~~LQi~ 454 (1196)
.|-+- + .++.. ..++.++-.-|+-.... . .......|. +-...|..
T Consensus 163 ~raL~--~--dp~~~-----~~~l~~a~~~~~~~~y~---------------------~---Ar~~~~~~~-~~~~~~A~ 208 (250)
T COG3063 163 KRALE--L--DPQFP-----PALLELARLHYKAGDYA---------------------P---ARLYLERYQ-QRGGAQAE 208 (250)
T ss_pred HHHHH--h--CcCCC-----hHHHHHHHHHHhcccch---------------------H---HHHHHHHHH-hcccccHH
Confidence 55321 1 11111 11122222222211100 0 000011110 11127788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 045708 455 VLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGL 495 (1196)
Q Consensus 455 vL~e~i~~a~~~~d~~~~~~~~~~LL~~~~~~Ls~~eQ~~L 495 (1196)
.|...|.++.++||...+.++-..|-+.|.. |.+.|..+
T Consensus 209 sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~--s~e~q~f~ 247 (250)
T COG3063 209 SLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY--SEEYQTFL 247 (250)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHHHhHh
Confidence 8999999999999999999999877777755 56666554
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=54.45 E-value=2.2e+02 Score=30.89 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=75.7
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhccCCc----hhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhh
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELARLTAD----YFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRK 295 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D----~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~k 295 (1196)
-.+|+.++..|+|..|+..|.+++...-...+ +.++|.++-.. +.. ...+ ...+.+|+..|.+
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~-----~~~-~~~~-------~~~~~~A~~~~~~ 140 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ-----IDR-VDRD-------QTAAREAFEAFQE 140 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh-----ccc-ccCC-------HHHHHHHHHHHHH
Confidence 45689999999999999999999976554333 22222222111 100 0001 1224555666655
Q ss_pred cCC--CCCCCCCCCchh--------hHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccC
Q 045708 296 SFI--PDNAQRVSPLSF--------ELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTL 365 (1196)
Q Consensus 296 s~~--p~n~e~~p~l~~--------~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~L 365 (1196)
... |.+.. ...... ..+.-+.++.++..++...++...+.++....... ......+..++.+|..+
T Consensus 141 ~~~~~p~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 141 LIRRYPNSEY-APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT---PATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHCCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHHHHc
Confidence 432 11110 000000 00111234555555666677777776655331111 12345666788888889
Q ss_pred CchhhHHHHHHHHHH
Q 045708 366 DYQRKAAFFSRQVAQ 380 (1196)
Q Consensus 366 Gf~RK~AF~lR~l~~ 380 (1196)
|-..++.=+++.+..
T Consensus 217 g~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 217 GLKDLAQDAAAVLGA 231 (235)
T ss_pred CCHHHHHHHHHHHHh
Confidence 988888777776544
No 45
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=54.02 E-value=32 Score=33.03 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=37.5
Q ss_pred ceEEeccc---EEEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 710 AIILYEGE---IRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 710 ~vmLleGE---~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
..+.+.++ .+...|+|+|.|..+|-| +|.... ...|.+. +....|.||+++++.|++.+
T Consensus 8 ~~i~F~~~~~~~~~~~l~l~N~s~~~i~f-Kiktt~---~~~y~v~----P~~G~i~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 8 ELIFFNAPFNKQQSCELTLTNPSDKPIAF-KIKTTN---PNRYRVK----PSYGIIEPGESVEITITFQP 69 (109)
T ss_dssp SEEEEESSTSS-EEEEEEEEE-SSSEEEE-EEEES----TTTEEEE----SSEEEE-TTEEEEEEEEE-S
T ss_pred cceEEcCCCCceEEEEEEEECCCCCcEEE-EEEcCC---CceEEec----CCCEEECCCCEEEEEEEEEe
Confidence 34555554 499999999999998743 333322 3344443 33468999999999998888
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=53.68 E-value=97 Score=40.58 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=83.5
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcC
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSF 297 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~ 297 (1196)
+.+-+++.+...|+|..|+..|+.....-.-.+-.+|+=-| -|...+ ..+++|+..|.|..
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a----~c~~~l---------------~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA----RCYMEL---------------GEYEEAIEFYEKVL 476 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH----HHHHHH---------------hhHHHHHHHHHHHH
Confidence 55667788888888888888888877666656666675322 022222 33899999999976
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCC-CC-CCCH-HHHHHHHHHHHHHhccCCchhhHHHH
Q 045708 298 IPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGA-KS-LIDA-SDRLILYIEIARLFGTLDYQRKAAFF 374 (1196)
Q Consensus 298 ~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~-~~-ll~~-~dqi~i~~~lA~vy~~LGf~RK~AF~ 374 (1196)
. +-|. .+.+-++++.++...+...++.+.|-+..... .. .... .-..+|....+.+|.+.|..=+..=.
T Consensus 477 ~------~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 477 I------LAPD--NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred h------cCCC--chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3 1122 25688899999998888888999888755332 10 0000 01123445556667777655553333
Q ss_pred HHHHH
Q 045708 375 SRQVA 379 (1196)
Q Consensus 375 lR~l~ 379 (1196)
.+.++
T Consensus 549 ~~~Lv 553 (895)
T KOG2076|consen 549 ASTLV 553 (895)
T ss_pred HHHHH
Confidence 33333
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=52.94 E-value=36 Score=33.31 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=32.6
Q ss_pred ccEEEEEEEEEeccccccce-EEEE--EecCC--CcceE--EEec------cccccccCCCCCCEEEEEEEEEE
Q 045708 716 GEIRDVWISLANAGTVPVEQ-AHIS--LSGKN--QDSII--SIAS------ETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 716 GE~~~f~ItL~N~S~~pV~~-l~~s--f~d~~--~~~i~--~~e~------e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
|...+++|+|+|.|+.++.| +.-. ..+.. ..... .... ..-+..+.++||++.++.+++.-
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 45599999999999987754 2211 11111 01111 1111 11245689999999999999998
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=52.91 E-value=62 Score=33.07 Aligned_cols=92 Identities=13% Similarity=-0.014 Sum_probs=61.3
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCC
Q 045708 222 IGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDN 301 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n 301 (1196)
+|..+++.|++.+|+..|..|+..-- .+ +.++-.++.+.. . .-++.+|+..|.++...
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~-----~~a~~~lg~~~~--~------------~g~~~~A~~~y~~Al~l-- 87 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WS-----WRAHIALAGTWM--M------------LKEYTTAINFYGHALML-- 87 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-Cc-----HHHHHHHHHHHH--H------------HhhHHHHHHHHHHHHhc--
Confidence 48889999999999999999885422 22 222222211111 1 12478899999887531
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccC
Q 045708 302 AQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADG 341 (1196)
Q Consensus 302 ~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~ 341 (1196)
.|. ..++...++..+...+...++.+.+.+++..
T Consensus 88 ---~p~---~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 ---DAS---HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred ---CCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111 2478888888888888888898888887654
No 49
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=52.79 E-value=1.3e+02 Score=41.38 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=13.9
Q ss_pred eehhHhhhcCChHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYS 240 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~ 240 (1196)
-+++.+...|++.+|++.+.
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 45667777777777777655
No 50
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=52.78 E-value=71 Score=29.84 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=35.7
Q ss_pred EEEEECCCcceEEEeEEEEEe--ecceee-e-eeeeEEECCCCeeEEEEEE
Q 045708 583 LVELANPCGFDLRVDSIYLSV--HSGNFD-A-FPISVELPPNSSKVITLSG 629 (1196)
Q Consensus 583 ~VtLqNPf~feL~I~sI~L~t--eGv~Fe-s-~~~si~L~P~S~~~I~Lsg 629 (1196)
.+++.||-.|++.++++.... +|..+- . ....+.+||+++..+.+.+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v 51 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPV 51 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEE
Confidence 478899999999999998765 577666 2 4567999999999877753
No 51
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=51.78 E-value=10 Score=33.91 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=29.5
Q ss_pred cccceeeehhHhhhcCChHHHHHHHHHHHHHhcc
Q 045708 215 LARAQKTIGDYCLLAGSPVDANAHYSTALELARL 248 (1196)
Q Consensus 215 ~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~ 248 (1196)
.+...--+|..+...|++.+|+++|.+|+++.++
T Consensus 45 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 45 TANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4556667899999999999999999999998864
No 52
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=51.57 E-value=4.5e+02 Score=30.68 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=53.9
Q ss_pred cceEEecccEEEEEEEEEeccccccceEEEEEecC----C--------------------CcceE---------EE---e
Q 045708 709 GAIILYEGEIRDVWISLANAGTVPVEQAHISLSGK----N--------------------QDSII---------SI---A 752 (1196)
Q Consensus 709 ~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~----~--------------------~~~i~---------~~---e 752 (1196)
++..+.-||.+..+|-+.|.|..|.++.-+.-... . .+++. .+ +
T Consensus 164 gp~~V~~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~v~~en~~~~~~~~~~~~ 243 (306)
T PF12735_consen 164 GPSSVKVGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERSNSPPPNPSSSSNLNNKQIADAVTDENIVQAMQKYSSVE 243 (306)
T ss_pred CCceEecCCeEEEEEEEEECCCCCeeEEEEecCccccccccccCCCCCcccccccccccccccceehhHHHHhhhhcccc
Confidence 34999999999999999999999998766554310 0 01111 01 1
Q ss_pred --cccc--cc---ccCCCCCCEEEEEEEEEEcccCCCCcc
Q 045708 753 --SETL--KS---ALPLKPGAEVIIPVTLKAWQHGPVDPE 785 (1196)
Q Consensus 753 --~e~~--~~---~~~I~PG~s~t~~i~v~g~k~g~~~~~ 785 (1196)
.+++ .. -.+|.||++....+.+.|.++|...+|
T Consensus 244 ~~~gli~LsnDiriGpL~P~~c~~~eL~fi~l~~G~~~L~ 283 (306)
T PF12735_consen 244 ESTGLICLSNDIRIGPLAPGACYSVELRFIALSPGVHNLE 283 (306)
T ss_pred cCCceEEecccccccccCCCceEEEEEEEEEeccceEeec
Confidence 1221 11 258999999999999999999986664
No 53
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.47 E-value=45 Score=37.96 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=56.8
Q ss_pred hhhcCChHHHHHHHHHHHHHh----ccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCC
Q 045708 226 CLLAGSPVDANAHYSTALELA----RLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDN 301 (1196)
Q Consensus 226 ~LLaG~~~DAL~~Y~eAi~~l----k~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n 301 (1196)
+++.|+|.+|-..|.+-+... +..+.+.|||-++=. +.++ ++....+..++.-|-++.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-----------qg~y---~~Aa~~f~~~~k~~P~s~---- 212 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-----------QGDY---EDAAYIFARVVKDYPKSP---- 212 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-----------cccc---hHHHHHHHHHHHhCCCCC----
Confidence 467888888888888877655 457899999977632 1221 122233444444443332
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhh
Q 045708 302 AQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSA 338 (1196)
Q Consensus 302 ~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a 338 (1196)
- .-|+.+|++..+.+.+...++..+|...
T Consensus 213 -----K---ApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 213 -----K---APDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred -----C---ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1 2499999999999888777777666554
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.19 E-value=1.1e+02 Score=36.03 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=89.0
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHH---HHHHhh-hccCC-----Cchhh----HHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGS---VCALLV-DRMGQ-----KDAVL----EEEVKFRYN 287 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi---~~~llL-~~~~~-----~~~~~----~~ei~~~~~ 287 (1196)
.||--||-.|.|.+|-+.+..+++..+...-++.+++++--+ ..++++ ...-. ..... -.|..+.++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 477789999999999999999999999999999999999876 233333 21100 00000 012334589
Q ss_pred HHHHHHhhcCC--CCCCCCC---CCchhh---HHHHHHHHHHHhhccc------------------hHHHHHHHHhhccC
Q 045708 288 SVILHYRKSFI--PDNAQRV---SPLSFE---LEATLKLARFLCRREL------------------AKDVVELLTSAADG 341 (1196)
Q Consensus 288 ~ai~lY~ks~~--p~n~e~~---p~l~~~---~Ea~Lr~a~~L~~~~~------------------~~ei~~~L~~a~~~ 341 (1196)
+++++|+.... |.|.|.. -..-|| -|-.+|+=|-+...+. ..-++..+.||+..
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 99999998765 3444310 000111 3566665443322211 11234445555432
Q ss_pred CCCCCC-HHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 045708 342 AKSLID-ASDRLILYIEIARLFGTLDYQRKAAFFSRQV 378 (1196)
Q Consensus 342 ~~~ll~-~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l 378 (1196)
++ +.+...+...|..|.-.+|=.--++=..|++
T Consensus 388 ----at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 388 ----ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred ----ccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 21 2345566666666666666555555555654
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=1.2e+02 Score=37.14 Aligned_cols=137 Identities=14% Similarity=0.196 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHhccC-CchhhHHHhHHHH-H---HHHhhhccCC---CchhhHHHHHH------HHHHHHHHHhhc
Q 045708 231 SPVDANAHYSTALELARLT-ADYFWYAGALEGS-V---CALLVDRMGQ---KDAVLEEEVKF------RYNSVILHYRKS 296 (1196)
Q Consensus 231 ~~~DAL~~Y~eAi~~lk~~-~D~LWlAsALEGi-~---~~llL~~~~~---~~~~~~~ei~~------~~~~ai~lY~ks 296 (1196)
.-..|..+|+.|+++.+.+ +.|.=+|-|.|.+ . |+....+..+ -|+-.+.-+-+ ++.+|+.+|+++
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455666666666655432 4444567788865 2 3322322111 13333332222 368899999987
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCC-C-CCCCHHHHHHHHHHHHHHhccCCchhhHHHH
Q 045708 297 FIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGA-K-SLIDASDRLILYIEIARLFGTLDYQRKAAFF 374 (1196)
Q Consensus 297 ~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~-~-~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~ 374 (1196)
.. +.. .+.-+..++|+..-......+++..+.+.+... + ...+ .+-+.+...+|.-|...+=.+++..+
T Consensus 459 i~------~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~-~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 459 IL------LGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID-DETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hh------ccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 52 111 234577888888877666777877776655431 1 1121 22445555588888887777777665
Q ss_pred HH
Q 045708 375 SR 376 (1196)
Q Consensus 375 lR 376 (1196)
.-
T Consensus 530 a~ 531 (559)
T KOG1155|consen 530 AT 531 (559)
T ss_pred HH
Confidence 43
No 56
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=50.31 E-value=16 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=26.2
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhcc
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELARL 248 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~ 248 (1196)
-.+|+..|..++|..|+.-|..|+++.++
T Consensus 5 ~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 5 DLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998765
No 57
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=49.41 E-value=41 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred eCCCCcEEEEeeCCCcceEEecccEEEEEEEEEeccccccceEEEEEec
Q 045708 694 VPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSG 742 (1196)
Q Consensus 694 Ip~qP~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d 742 (1196)
+...|.+.+.-+ .+.-.+.-||..+++|+++|.|..+... +++.|
T Consensus 20 ~~~~~~~~~~k~--~~~~~~~~Gd~v~ytitvtN~G~~~a~n--v~v~D 64 (76)
T PF01345_consen 20 VVAIPDLSITKT--VNPSTANPGDTVTYTITVTNTGPAPATN--VVVTD 64 (76)
T ss_pred ccCCCCEEEEEe--cCCCcccCCCEEEEEEEEEECCCCeeEe--EEEEE
Confidence 333445555433 4566799999999999999999999766 45555
No 58
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=49.07 E-value=56 Score=39.82 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=66.2
Q ss_pred ccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhh-HHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 045708 214 RLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFW-YAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILH 292 (1196)
Q Consensus 214 ~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LW-lAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~l 292 (1196)
.--|+-..||+-|-..++..||.+.|.-|+..--..++.+| +|.+.|-+ ..+++|-+.
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l---------------------~d~~eAa~~ 488 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL---------------------KDLNEAAQY 488 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH---------------------HhHHHHHHH
Confidence 45788899999999999999999999999965554444444 55555522 226677777
Q ss_pred HhhcCCCCCCCC--CCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhcc
Q 045708 293 YRKSFIPDNAQR--VSPLSFELEATLKLARFLCRRELAKDVVELLTSAAD 340 (1196)
Q Consensus 293 Y~ks~~p~n~e~--~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~ 340 (1196)
|.|+..-...+. .+. . .++++.+|++........++..-...+..
T Consensus 489 yek~v~~~~~eg~~~~~--t-~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDE--T-IKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHhhcccchH--H-HHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 776531000000 011 1 46788888888877777677665555443
No 59
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=49.07 E-value=2.9e+02 Score=32.29 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=13.9
Q ss_pred eehhHhhhcCChHHHHHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALE 244 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~ 244 (1196)
.+|.+++..|++.+|+..|..++.
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhc
Confidence 455666666666666666555443
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=48.12 E-value=2e+02 Score=34.34 Aligned_cols=129 Identities=20% Similarity=0.136 Sum_probs=72.6
Q ss_pred hHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhcccchhhhHHHH--HHHHHhhc
Q 045708 328 AKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQV--LAMTTKAY 405 (1196)
Q Consensus 328 ~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l~~~lv~~~~~~~~~s~~~l--L~~~~~~Y 405 (1196)
.+..++.+..|+-..-+--|+.=-+++|+++.++|+.+.=.-|++||.+.++... +.-.-..|..+|.. |.++.-.|
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv-~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV-NSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH-HhcCcCchhHHHHHHHHHHHHHHH
Confidence 3445555655554422222222246899999999999999999999999876544 22221233445543 23333344
Q ss_pred CccccccccccccccccCCCccCCCCccccchhhhhhcccccchHHHHHHHHHHHHHHHHcCChHHHHHH
Q 045708 406 RVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSA 475 (1196)
Q Consensus 406 gi~~~~~~~~~~~~~~~g~~~~d~~~~~~~s~~~v~~~fg~gW~~LQi~vL~e~i~~a~~~~d~~~~~~~ 475 (1196)
+..++- .++. +.-.++.+=... .|...+|-..+.-.-.+.++.||-+.+|+-
T Consensus 217 R~~G~L-----gdA~----------e~C~Ea~klal~---~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 217 RLLGRL-----GDAM----------ECCEEAMKLALQ---HGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHhccc-----ccHH----------HHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 443321 0000 000011110111 468888888888888888888888776654
No 61
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=48.08 E-value=81 Score=37.35 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=46.5
Q ss_pred cceEEecccEEEEEEEEEeccccccceEEEEE-----ecCCCcceEEEec----cc------cccccCCCCCCEEEEEEE
Q 045708 709 GAIILYEGEIRDVWISLANAGTVPVEQAHISL-----SGKNQDSIISIAS----ET------LKSALPLKPGAEVIIPVT 773 (1196)
Q Consensus 709 ~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf-----~d~~~~~i~~~e~----e~------~~~~~~I~PG~s~t~~i~ 773 (1196)
.+.-=..|-.-+++++++|.|+.||..=.|+- -++ ..++.++. |+ +.+..+|+|||+.++.++
T Consensus 274 ~a~Y~VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~--~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~ 351 (399)
T TIGR03079 274 KANYDVPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNA--NGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKME 351 (399)
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCc--ccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEE
Confidence 34445567788999999999999998777653 332 02333322 22 255679999999999998
Q ss_pred EEE
Q 045708 774 LKA 776 (1196)
Q Consensus 774 v~g 776 (1196)
++.
T Consensus 352 aqd 354 (399)
T TIGR03079 352 AKD 354 (399)
T ss_pred Eeh
Confidence 886
No 62
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=47.92 E-value=82 Score=29.95 Aligned_cols=63 Identities=22% Similarity=0.193 Sum_probs=47.7
Q ss_pred eEEecCeEEEEEEEECCCcceEEEeEEEEEe-ecceeeeeeeeEEECCCCeeEEEEEEE-eCeeee
Q 045708 573 IWVVGEPVQVLVELANPCGFDLRVDSIYLSV-HSGNFDAFPISVELPPNSSKVITLSGI-PTSVGP 636 (1196)
Q Consensus 573 ~~V~gE~~ev~VtLqNPf~feL~I~sI~L~t-eGv~Fes~~~si~L~P~S~~~I~Lsg~-P~~~G~ 636 (1196)
.+..|+.....|+|.|--....++. +.... .+..|...+..-.|+|+.+.++.+.+. +...|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~-v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~ 79 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFR-VRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGD 79 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEE-EEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCce
Confidence 3779999999999999988876665 33333 344566666777899999999999999 455564
No 63
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=47.91 E-value=2.9e+02 Score=32.34 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=49.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccC
Q 045708 286 YNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTL 365 (1196)
Q Consensus 286 ~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~L 365 (1196)
+.+|+..|.+... ..|. ..++.+.+++++...+...++.+.+.++... ++......+..++.+|...
T Consensus 196 ~~~A~~~~~~al~-----~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 196 LDAARALLKKALA-----ADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHHHHh-----HCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHc
Confidence 5667777766532 0111 1467777888888888888888888876542 1222334566777888777
Q ss_pred CchhhHHHHHHHH
Q 045708 366 DYQRKAAFFSRQV 378 (1196)
Q Consensus 366 Gf~RK~AF~lR~l 378 (1196)
|-.-++.-+++.+
T Consensus 263 g~~~~A~~~l~~~ 275 (389)
T PRK11788 263 GDEAEGLEFLRRA 275 (389)
T ss_pred CCHHHHHHHHHHH
Confidence 7666655555543
No 64
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.81 E-value=76 Score=34.27 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=55.5
Q ss_pred eEEecCeEEEEEEEECCCcceEEEeEEEEEeecc---eee--e---eeeeEEECCCCeeEEEEEEEeCeeeeEEEceEEE
Q 045708 573 IWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSG---NFD--A---FPISVELPPNSSKVITLSGIPTSVGPVTIPGCTV 644 (1196)
Q Consensus 573 ~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv---~Fe--s---~~~si~L~P~S~~~I~Lsg~P~~~G~L~I~G~~~ 644 (1196)
..|+|+.+.|.++++|-=.- ...+++|..++- .|+ + ...-=.|+|++..+..+.++|+..|...+....+
T Consensus 33 ~~v~g~~v~V~~~iyN~G~~--~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~V 110 (181)
T PF05753_consen 33 YLVEGEDVTVTYTIYNVGSS--AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFNFTPAVV 110 (181)
T ss_pred cccCCcEEEEEEEEEECCCC--eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEEccCEEE
Confidence 57899999999999997542 334444444332 233 1 1222589999999999999999999999999999
Q ss_pred EEecc
Q 045708 645 HCFGV 649 (1196)
Q Consensus 645 ~v~g~ 649 (1196)
+...-
T Consensus 111 tY~~~ 115 (181)
T PF05753_consen 111 TYRDS 115 (181)
T ss_pred EEECC
Confidence 98554
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=47.30 E-value=3.5e+02 Score=28.06 Aligned_cols=132 Identities=12% Similarity=0.040 Sum_probs=77.8
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhh
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRK 295 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~k 295 (1196)
.+....+|..++..|++..|+..|.+++..... +. .++-.++. +.. ..+ .+.+|+..|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~-----~~~~~la~-~~~-~~~------------~~~~A~~~~~~ 90 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DY-----LAYLALAL-YYQ-QLG------------ELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cH-----HHHHHHHH-HHH-HcC------------CHHHHHHHHHH
Confidence 455566899999999999999999999865321 11 11111211 111 111 14555666655
Q ss_pred cCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHH
Q 045708 296 SFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFS 375 (1196)
Q Consensus 296 s~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~l 375 (1196)
... ..|. ...+...++.++...+...++.+.+.++..... .......+..++.+|...|-..+..-.+
T Consensus 91 al~-----~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 91 ALT-----LNPN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHh-----hCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 431 0011 124566677777777777888888887764311 1123445666778888888777766666
Q ss_pred HHHH
Q 045708 376 RQVA 379 (1196)
Q Consensus 376 R~l~ 379 (1196)
..++
T Consensus 159 ~~~~ 162 (234)
T TIGR02521 159 TRAL 162 (234)
T ss_pred HHHH
Confidence 5543
No 66
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=45.34 E-value=81 Score=28.73 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=37.1
Q ss_pred ecCeEEEEEEEECCCcceEEEeEEEEEee---cce--eeeeeeeEEECCCCeeEEEEEEEeCee---eeEEE
Q 045708 576 VGEPVQVLVELANPCGFDLRVDSIYLSVH---SGN--FDAFPISVELPPNSSKVITLSGIPTSV---GPVTI 639 (1196)
Q Consensus 576 ~gE~~ev~VtLqNPf~feL~I~sI~L~te---Gv~--Fes~~~si~L~P~S~~~I~Lsg~P~~~---G~L~I 639 (1196)
.||.+.+.+++.|.-.-.+ .++.|..+ |-. +...... .|+|+.+.++++.++|-.. |...|
T Consensus 3 ~G~~~~~~~tv~N~g~~~~--~~v~~~l~~P~GW~~~~~~~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 3 PGETVTVTLTVTNTGTAPL--TNVSLSLSLPEGWTVSASPASVP-SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp TTEEEEEEEEEE--SSS-B--SS-EEEEE--TTSE---EEEEE---B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCEEEEEEEEEECCCCce--eeEEEEEeCCCCccccCCccccc-cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 6899999999999886554 45555443 433 3333333 8999999999999977543 77554
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=45.06 E-value=1.4e+02 Score=35.51 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=59.0
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCC
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIP 299 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p 299 (1196)
..|+-++..|+|.+|+..|.+|+..--. + +.++-..+ |++.+ + .+.+|+..|.++..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~--~----~~a~~~~a~~~~~~---g------------~~~eAl~~~~~Al~- 64 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN--N----AELYADRAQANIKL---G------------NFTEAVADANKAIE- 64 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc---C------------CHHHHHHHHHHHHH-
Confidence 4588899999999999999999975332 2 22333332 22222 1 15566666666531
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccC
Q 045708 300 DNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADG 341 (1196)
Q Consensus 300 ~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~ 341 (1196)
+-+- ..++.++++..+...+...++...+.+++..
T Consensus 65 -----l~P~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 65 -----LDPS--LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred -----hCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 0010 1467888888888888888888888877654
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=44.75 E-value=1.3e+02 Score=31.31 Aligned_cols=41 Identities=20% Similarity=0.042 Sum_probs=30.4
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV 263 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~ 263 (1196)
-.+|..++..|+|.+|+.+|..|+.+.. |....+.++..++
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg 79 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIG 79 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHH
Confidence 3458889999999999999999998643 3344455666654
No 69
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=44.30 E-value=53 Score=27.03 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=26.9
Q ss_pred EEEEeccccccceEEEEEecCCCcce-EEEeccccccccCCCCCCEEEEEEE
Q 045708 723 ISLANAGTVPVEQAHISLSGKNQDSI-ISIASETLKSALPLKPGAEVIIPVT 773 (1196)
Q Consensus 723 ItL~N~S~~pV~~l~~sf~d~~~~~i-~~~e~e~~~~~~~I~PG~s~t~~i~ 773 (1196)
++++|+|+.|+.--.+.-+- ..+ .+| .+.+|+||++..+.+.
T Consensus 2 F~~~N~g~~~L~I~~v~tsC---gCt~~~~------~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSC---GCTTAEY------SKKPIAPGESGKIKVT 44 (45)
T ss_pred EEEEECCCCcEEEEEeeEcc---CCEEeeC------CcceECCCCEEEEEEE
Confidence 67899999888555554432 111 111 2357999999988874
No 70
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.70 E-value=1.6e+02 Score=35.66 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=63.4
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcC
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSF 297 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~ 297 (1196)
...-.|+..++.|.|+-|++.|.||+. || +++-|.+--.-|.. +..-.+++|+.++-|.-
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~-----nd----asc~ealfniglt~-----------e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALN-----ND----ASCTEALFNIGLTA-----------EALGNLDEALDCFLKLH 551 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHc-----Cc----hHHHHHHHHhcccH-----------HHhcCHHHHHHHHHHHH
Confidence 344568888899999999999999874 44 34444331111110 11122455555554421
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCc
Q 045708 298 IPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDY 367 (1196)
Q Consensus 298 ~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf 367 (1196)
+ -|-=.+|....+|.+.-..+...++.++++.+... ++ .|- .+++.+|.+|.+=|=
T Consensus 552 ----~----il~nn~evl~qianiye~led~aqaie~~~q~~sl----ip-~dp-~ilskl~dlydqegd 607 (840)
T KOG2003|consen 552 ----A----ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----IP-NDP-AILSKLADLYDQEGD 607 (840)
T ss_pred ----H----HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----CC-CCH-HHHHHHHHHhhcccc
Confidence 0 00001456666666665555556677777766543 21 222 367777777777764
No 71
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=41.80 E-value=1.6e+02 Score=37.41 Aligned_cols=127 Identities=12% Similarity=0.032 Sum_probs=78.4
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCC
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFI 298 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~ 298 (1196)
...+|..++..|+|.+|+..|..|++.-.. +..+| ..++.+.+ ..+ .+.+|+..|.++..
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~-----~~lg~~~~--~~g------------~~~~A~~~~~kal~ 427 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIY-----YHRAQLHF--IKG------------EFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH-----HHHHHHHH--HcC------------CHHHHHHHHHHHHH
Confidence 356799999999999999999999876322 22222 22221111 111 26677777777642
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 045708 299 PDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQV 378 (1196)
Q Consensus 299 p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l 378 (1196)
..|. ..++.+.++..+...+...++...+.++..... +....+..++.+|...|-.-++.-..+.+
T Consensus 428 -----l~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 428 -----LDPD---FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP------EAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred -----cCcc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0111 135666777777777777888888777654311 12345667788888888766666555554
Q ss_pred H
Q 045708 379 A 379 (1196)
Q Consensus 379 ~ 379 (1196)
+
T Consensus 494 l 494 (615)
T TIGR00990 494 I 494 (615)
T ss_pred H
Confidence 3
No 72
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=41.76 E-value=38 Score=27.25 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=28.3
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHH
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYA 256 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlA 256 (1196)
-.+|..|...|++++|.+.|..++.. ...+-..|+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHH
Confidence 35789999999999999999999974 3344455654
No 73
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=1.9e+02 Score=32.68 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=57.9
Q ss_pred HhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 045708 225 YCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQR 304 (1196)
Q Consensus 225 l~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n~e~ 304 (1196)
|+-=.++|.||-..|..|.++.|...-|==-|-|..-.+-+- .+.+..+ +....|-+|-..|+|.- |.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h--~k~~skh-----Daat~YveA~~cykk~~-~~e--- 91 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLH--LKAGSKH-----DAATTYVEAANCYKKVD-PEE--- 91 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HhcCCch-----hHHHHHHHHHHHhhccC-hHH---
Confidence 555567899999999999999998887655555555443111 1222222 55566889999999873 222
Q ss_pred CCCchhhHHHHHHHHHHHhhccchH
Q 045708 305 VSPLSFELEATLKLARFLCRRELAK 329 (1196)
Q Consensus 305 ~p~l~~~~Ea~Lr~a~~L~~~~~~~ 329 (1196)
.++|.-+...+++.++...
T Consensus 92 ------Av~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 92 ------AVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred ------HHHHHHHHHHHHHhhhHHH
Confidence 2577777777777665543
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=41.38 E-value=24 Score=30.62 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.9
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHh
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~l 246 (1196)
...+|..++..|+|.+|+..|..|+..-
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3467999999999999999999999864
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=40.97 E-value=1.8e+02 Score=37.35 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCc
Q 045708 313 EATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDY 367 (1196)
Q Consensus 313 Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf 367 (1196)
++...++.++...+...++.+.+.++..... +...++..++.+|...|-
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAP------DNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCc
Confidence 4555555555555555566666555543211 123455566666666665
No 76
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=40.73 E-value=20 Score=24.40 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.8
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHHH
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
..+|..+...|++.+|...|..++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45789999999999999999998864
No 77
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.94 E-value=25 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.7
Q ss_pred hhcCChHHHHHHHHHHHHHhcc
Q 045708 227 LLAGSPVDANAHYSTALELARL 248 (1196)
Q Consensus 227 LLaG~~~DAL~~Y~eAi~~lk~ 248 (1196)
=..|++.+|+.+|.+||+.|-.
T Consensus 17 D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 17 EKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HhcCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999999987753
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.86 E-value=1.3e+02 Score=36.47 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=64.6
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccC--------------CC---------
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMG--------------QK--------- 274 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~--------------~~--------- 274 (1196)
....|.+.+.+||+..|.-+|.+|+.+.-..= -.+||+. |.+-.-+.. +.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL------~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRL------EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGT 410 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhH------HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcc
Confidence 34669999999999999999999997552111 2455554 443332110 00
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhc
Q 045708 275 DAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAA 339 (1196)
Q Consensus 275 ~~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~ 339 (1196)
+..+++ +-.-+.|-.+|-|+.. .- +.|+-++++.|+++...+..+++..+|-+++
T Consensus 411 ~V~~~d--p~~rEKAKkf~ek~L~------~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 411 LVLFPD--PRMREKAKKFAEKSLK------IN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred eeeccC--chhHHHHHHHHHhhhc------cC--CccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 000000 0012345555555442 11 2478899999999999899999999888764
No 79
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=39.78 E-value=2.2e+02 Score=30.88 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=62.1
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhh
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRK 295 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~k 295 (1196)
...--.+|.+|+..|++.+|+..|..|+.+-- .+--+|.+- +.+++. ..++. ..++|..+|.+
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~l-----A~aL~~-~~g~~----------~~~~A~~~l~~ 135 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAAL-----ATVLYY-QAGQH----------MTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH-----HHHHHH-hcCCC----------CcHHHHHHHHH
Confidence 33456679999999999999999999987554 333333222 111111 12211 13566666666
Q ss_pred cCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCC
Q 045708 296 SFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAK 343 (1196)
Q Consensus 296 s~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~ 343 (1196)
.... .|. +.++..-++..+...+...++...+.+++....
T Consensus 136 al~~-----dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 136 ALAL-----DAN---EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHh-----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5421 011 135666667666677888888888888766533
No 80
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=39.78 E-value=1.1e+02 Score=31.68 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=49.1
Q ss_pred eeEEecCeEEEEEEEECCCcceEE------EeEEEEEee----cceee---eeeeeEEECCCCeeEEEEEEEeCeeeeEE
Q 045708 572 LIWVVGEPVQVLVELANPCGFDLR------VDSIYLSVH----SGNFD---AFPISVELPPNSSKVITLSGIPTSVGPVT 638 (1196)
Q Consensus 572 ~~~V~gE~~ev~VtLqNPf~feL~------I~sI~L~te----Gv~Fe---s~~~si~L~P~S~~~I~Lsg~P~~~G~L~ 638 (1196)
..+.+|++|.+.+.+.|-..-+-. -++..+..+ .-.+- ...-.|.+..++..++.|.++|+..|.|.
T Consensus 25 ~~~~vGqpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~~~~WlV~Grrrg~f~~~~~~~~~~~l~LIPL~~G~L~ 104 (147)
T PF12584_consen 25 PPCRVGQPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVADSDNWLVSGRRRGVFSLSDGSEHEIPLTLIPLRAGYLP 104 (147)
T ss_pred cceEeCCeEEEEEEEEEcccCCccccccccCCCccEEEEEecCCCcEEEeccCcceEEecCCCeEEEEEEEEecccceec
Confidence 358899999999998884322221 011111111 00000 01224667888889999999999999999
Q ss_pred EceEEEEEec
Q 045708 639 IPGCTVHCFG 648 (1196)
Q Consensus 639 I~G~~~~v~g 648 (1196)
.-.+.++-..
T Consensus 105 lP~V~i~~~~ 114 (147)
T PF12584_consen 105 LPKVEIRPYD 114 (147)
T ss_pred CCEEEEEecc
Confidence 9988887765
No 81
>PF13584 BatD: Oxygen tolerance
Probab=39.63 E-value=2.7e+02 Score=34.34 Aligned_cols=73 Identities=25% Similarity=0.195 Sum_probs=46.9
Q ss_pred eeEEecCeEEEEEEEECCCcceEEE---eEEEEEeecceeeeeeeeEEECCCC-eeEEEEEEEeCeeeeEEEceEEEEEe
Q 045708 572 LIWVVGEPVQVLVELANPCGFDLRV---DSIYLSVHSGNFDAFPISVELPPNS-SKVITLSGIPTSVGPVTIPGCTVHCF 647 (1196)
Q Consensus 572 ~~~V~gE~~ev~VtLqNPf~feL~I---~sI~L~teGv~Fes~~~si~L~P~S-~~~I~Lsg~P~~~G~L~I~G~~~~v~ 647 (1196)
....+||.+++.|++.++.. ++.+ ++..+...+ .+...+++=+..+ ....++.+.|+.+|.++|-.+.+++-
T Consensus 22 ~~v~~ge~~~l~i~~~~~~~-~~~~p~l~~f~v~~~~---~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~IP~~~v~v~ 97 (484)
T PF13584_consen 22 NEVGLGETFQLTITINGDGD-DPDLPELDGFEVLGPS---QSSSTSIINGKVSSSTTYTYTLQPKKTGTFTIPPFTVEVD 97 (484)
T ss_pred cEEcCCCEEEEEEEEecCcc-cCCCCCCCCeEEcceE---EEEEEEEecCceEEEEEEEEEEEecccceEEEceEEEEEC
Confidence 35789999999999998542 3333 233321111 1122233223333 34688889999999999999999987
Q ss_pred c
Q 045708 648 G 648 (1196)
Q Consensus 648 g 648 (1196)
|
T Consensus 98 G 98 (484)
T PF13584_consen 98 G 98 (484)
T ss_pred C
Confidence 7
No 82
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.47 E-value=1.1e+02 Score=34.97 Aligned_cols=86 Identities=9% Similarity=0.128 Sum_probs=54.9
Q ss_pred HhhhcCChHHHHHHHHHHHHHhccC----CchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCC--
Q 045708 225 YCLLAGSPVDANAHYSTALELARLT----ADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFI-- 298 (1196)
Q Consensus 225 l~LLaG~~~DAL~~Y~eAi~~lk~~----~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~-- 298 (1196)
+.+..|+|.+|+..|...+...-.. +-+.|+|.++... + + +.+|+..|.+...
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~---------g--~----------~~~A~~~f~~vv~~y 210 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK---------G--K----------KDDAAYYFASVVKNY 210 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc---------C--C----------HHHHHHHHHHHHHHC
Confidence 4444699999999999999876543 5788888887521 1 1 4445555544431
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhh
Q 045708 299 PDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSA 338 (1196)
Q Consensus 299 p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a 338 (1196)
|.+ + ...++.++++..+...+...++.+.+.++
T Consensus 211 P~s-----~--~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 211 PKS-----P--KAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred CCC-----c--chhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1 23488899988887766666666555543
No 83
>PF13584 BatD: Oxygen tolerance
Probab=39.10 E-value=8.3e+02 Score=30.11 Aligned_cols=223 Identities=16% Similarity=0.127 Sum_probs=119.3
Q ss_pred EEecCeEEEEEEEECCCcce-EEEeEEEEEe-ecceeeeeee-----eEEECCCCeeEEE---EEEEeCeeeeEEEceEE
Q 045708 574 WVVGEPVQVLVELANPCGFD-LRVDSIYLSV-HSGNFDAFPI-----SVELPPNSSKVIT---LSGIPTSVGPVTIPGCT 643 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqNPf~fe-L~I~sI~L~t-eGv~Fes~~~-----si~L~P~S~~~I~---Lsg~P~~~G~L~I~G~~ 643 (1196)
..+||++.+.++|+=+-.+. +....+.... +|...+.... ...+.......+. ..+.|..+|+|.|.+..
T Consensus 139 ~Yvge~v~lt~~ly~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~ 218 (484)
T PF13584_consen 139 VYVGEPVILTLRLYTRNNFRQLGIEELPPPDFEGFWVEQLGDDRQYEEERINGRRYRVIELRRYALFPQKSGTLTIPPAT 218 (484)
T ss_pred eecCCcEEEEEEEEEecCchhccccccCCCCCCCcEEEECCCCCceeEEEECCEEEEEEEEEEEEEEeCCceeEEecCEE
Confidence 67899999999988777766 4433333322 3443333211 1235554444444 67899999999999988
Q ss_pred EEEecccccccccchhhhhhhhccCCcccCCccccCCCCccCcCCceEEE--eCC-------CCcE-EEEeeCCCcceEE
Q 045708 644 VHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISV--VPP-------LPLL-VSNVVGGDGAIIL 713 (1196)
Q Consensus 644 ~~v~g~~~e~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~l~i~V--Ip~-------qP~L-~i~~ts~~~~vmL 713 (1196)
+++.-.........+... ..+ ..+ ..-..+.+.|+| +|. .|.+ ..++...-..-.+
T Consensus 219 ~~~~~~~~~~~~~~fg~~---~~~----~~~-------~~~~s~~~~i~V~plP~~~~p~~f~~aVg~f~l~~~~~~~~~ 284 (484)
T PF13584_consen 219 FEVTVSDPSGRRDFFGGN---FGR----SRP-------VSISSEPLTITVKPLPAEGAPADFSGAVGNFSLSQSWDPTEV 284 (484)
T ss_pred EEEEEecccCccCccccc---ccc----cee-------EEecCCCeEEEeccCCcccCCCCcccceeEEEEEEEcCcccc
Confidence 877543211110000000 000 000 000112344555 444 2221 1222221235788
Q ss_pred ecccEEEEEEEEEeccccc-cceEEEEEecCCCcceEEEecccccccc--CCCCCCEEEEEEEEEEcccCCCCccccccc
Q 045708 714 YEGEIRDVWISLANAGTVP-VEQAHISLSGKNQDSIISIASETLKSAL--PLKPGAEVIIPVTLKAWQHGPVDPETVAGK 790 (1196)
Q Consensus 714 leGE~~~f~ItL~N~S~~p-V~~l~~sf~d~~~~~i~~~e~e~~~~~~--~I~PG~s~t~~i~v~g~k~g~~~~~~~~~~ 790 (1196)
-.||..+.+|+|+=.|+.+ +..-.+.+. +.+-.|+.+.-.... .=...++.++.+.+..-++|-+.+
T Consensus 285 ~~Ge~vt~ti~i~g~Gn~~~~~lP~l~~~----~~~~vy~~~~~~~~~~~~~g~~g~~~~~~~~ip~~~G~~~l------ 354 (484)
T PF13584_consen 285 KVGEPVTRTITISGEGNLPSIQLPPLNLP----KGFRVYPPKPQEQDKPSGGGLTGSRTFKYTLIPKKPGDFTL------ 354 (484)
T ss_pred cCCCeEEEEEEEEEEcchhcccCCCCCCC----cccEEcCCCccccccccCCcceEEEEEEEEEEeCCCCeEEc------
Confidence 8999999999999887766 433333322 233333322111100 011345788999999856664222
Q ss_pred cccCCcccccccCCCCeEEEEeccccCCCCCCCCCCCeeEEEe-eEEEEEEcce
Q 045708 791 IASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVL-PLQICVLQGL 843 (1196)
Q Consensus 791 ~~~~~~~~~~k~~t~~~i~i~Y~~~~g~~~~~~~~~~~R~l~~-pl~vtV~~sl 843 (1196)
+.|.+.|=+.+ . -.++++++ +++|+|.++-
T Consensus 355 ---------------P~i~~~~fdp~-~-------~~y~~~~~~~~~i~V~~~~ 385 (484)
T PF13584_consen 355 ---------------PAIRFSWFDPQ-T-------GKYETATLPPITITVAPSA 385 (484)
T ss_pred ---------------CCeEEEEEcCC-C-------CeEEEEEcCCEEEEEecCC
Confidence 34778887752 1 14788887 4888888764
No 84
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=38.87 E-value=1.4e+02 Score=31.44 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=37.0
Q ss_pred CcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcceEEEecc----------cc-ccccCCCCCCEEEEEEEEEE
Q 045708 708 DGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASE----------TL-KSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 708 ~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e----------~~-~~~~~I~PG~s~t~~i~v~g 776 (1196)
+..+.+.-||......+.+|.|+.||-- ..++.+... .+ =++..|+|||++.+|+...=
T Consensus 58 q~~v~V~pGe~~~~~y~a~N~s~~~i~g----------~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~I 127 (152)
T PF04442_consen 58 QRSVKVHPGETALVFYEATNPSDKPITG----------QAIPNVTPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYI 127 (152)
T ss_dssp -SEEEEETT--EEEEEEEEE-SSS-EE-------------EEEE-SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE
T ss_pred eeeEEeCCCCEEEEEEEEECCCCCcEEE----------EEeeeECHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEE
Confidence 5677888899999999999999988722 333433221 11 12358999999999999998
Q ss_pred cccCC
Q 045708 777 WQHGP 781 (1196)
Q Consensus 777 ~k~g~ 781 (1196)
.|.+
T Consensus 128 -Dp~i 131 (152)
T PF04442_consen 128 -DPDI 131 (152)
T ss_dssp --GGG
T ss_pred -CCcc
Confidence 6665
No 85
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.71 E-value=27 Score=42.67 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=29.4
Q ss_pred cccceeeehhHhhhcCChHHHHHHHHHHHHHhcc
Q 045708 215 LARAQKTIGDYCLLAGSPVDANAHYSTALELARL 248 (1196)
Q Consensus 215 ~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~ 248 (1196)
..-..|-.||=|+-+|.|++|+++|+.||++...
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ 147 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD 147 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC
Confidence 3446789999999999999999999999996553
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=38.09 E-value=29 Score=29.77 Aligned_cols=31 Identities=32% Similarity=0.255 Sum_probs=25.2
Q ss_pred cccceeeehhHhhhcCChHHHHHHHHHHHHH
Q 045708 215 LARAQKTIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 215 ~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.......+|..++..|+|.+|+..|.+++..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445667899999999999999999999863
No 87
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.15 E-value=2.3e+02 Score=31.77 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHhhcCccccccccccccccccCCCccCCCC
Q 045708 352 LILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGK 431 (1196)
Q Consensus 352 i~i~~~lA~vy~~LGf~RK~AF~lR~l~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~g~~~~d~~~ 431 (1196)
|..+..-..-|..-|-.|...++..+++.-+....+ +..+..+|..++..|+-
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~---~~~A~~~l~~~~~~yr~------------------------ 210 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGD---YDKALKLLEPAASSYRR------------------------ 210 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHh------------------------
Confidence 455555556677777799999998888887765442 23456677777777742
Q ss_pred ccccchhhhhhcccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 045708 432 MHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLL 480 (1196)
Q Consensus 432 ~~~~s~~~v~~~fg~gW~~LQi~vL~e~i~~a~~~~d~~~~~~~~~~LL 480 (1196)
.||..|--.+|..+..+|.+++|....+..+..||
T Consensus 211 --------------egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 211 --------------EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred --------------CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 36999999999999999999999999888887776
No 88
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.11 E-value=1.3e+02 Score=33.22 Aligned_cols=115 Identities=15% Similarity=0.293 Sum_probs=77.3
Q ss_pred hhheeEEEecCCccceeeehHHHHHHHHhhhhhhhccCCcceeeEEEeecCCcccccCCCCCCCCCCCCcceeecceeeE
Q 045708 1006 ISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGSVLAHDMTPME 1085 (1196)
Q Consensus 1006 ~~~i~~~w~~~~~~~g~l~~~~~~~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1196)
|.+++..|+..---.|. ||+|.++-+.|.==+..++|.+- -+-|...|=..+.
T Consensus 211 igkldi~wktnlgekgr----------lqts~lqriapgygdvrlsle~~-----------------p~~vdleepf~is 263 (348)
T KOG2625|consen 211 IGKLDISWKTNLGEKGR----------LQTSALQRIAPGYGDVRLSLEAI-----------------PACVDLEEPFEIS 263 (348)
T ss_pred eeeeEEEeecccccccc----------chHHHHHhhcCCCCceEEEeecc-----------------ccccccCCCeEEE
Confidence 56889999852211222 77777777888777765544422 1346677778899
Q ss_pred EEEecCchhcccceeeeeeccCCCccccCCCCCcEEecccccccccccCCCCceeEEEEEEEEecceEEEEE
Q 045708 1086 VLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVA 1157 (1196)
Q Consensus 1086 v~v~n~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 1157 (1196)
++++|-.++.+-.-|++ | -+.+ +.+.|-|.-.+..-.+.|-+..-....+.-.+-|--+|.+
T Consensus 264 cki~ncseraldl~l~l-~--------~~nn-rhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisg 325 (348)
T KOG2625|consen 264 CKITNCSERALDLQLEL-C--------NPNN-RHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISG 325 (348)
T ss_pred EEEcccchhhhhhhhhh-c--------CCCC-ceeEEeccccccccCCCCcceeeeEEeeccchhcceeecc
Confidence 99999999998887773 4 2233 5899999877767778877766555555555566555554
No 89
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=37.02 E-value=49 Score=28.27 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.1
Q ss_pred eEEecccEEEEEEEEEeccccccceEEEEEec
Q 045708 711 IILYEGEIRDVWISLANAGTVPVEQAHISLSG 742 (1196)
Q Consensus 711 vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d 742 (1196)
-...-|+..+++|+++|.|..++..+ .+.|
T Consensus 6 ~~~~~Gd~v~Yti~v~N~g~~~a~~v--~v~D 35 (53)
T TIGR01451 6 TVATIGDTITYTITVTNNGNVPATNV--VVTD 35 (53)
T ss_pred cccCCCCEEEEEEEEEECCCCceEeE--EEEE
Confidence 34567999999999999999998754 5555
No 90
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=36.81 E-value=3.5e+02 Score=32.45 Aligned_cols=144 Identities=22% Similarity=0.112 Sum_probs=80.3
Q ss_pred hhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 045708 223 GDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNA 302 (1196)
Q Consensus 223 GDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n~ 302 (1196)
+=-+=+.|+.-||...-.||..++-..+|---+|-++= |+.=+.+. ..|- +-.--+|++|+..-...+.
T Consensus 213 aValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~---~~aDIyR~-~gd~---e~af~rYe~Am~~m~~~gd---- 281 (518)
T KOG1941|consen 213 AVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL---CFADIYRS-RGDL---ERAFRRYEQAMGTMASLGD---- 281 (518)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH---HHHHHHHh-cccH---hHHHHHHHHHHHHHhhhhh----
Confidence 33344668888999999998888777777655544322 22222111 0010 1112257777777665431
Q ss_pred CCCCCchhhHHHHHHHHHHHhhccch-----HHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Q 045708 303 QRVSPLSFELEATLKLARFLCRRELA-----KDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQ 377 (1196)
Q Consensus 303 e~~p~l~~~~Ea~Lr~a~~L~~~~~~-----~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~ 377 (1196)
++. .+|+..-.|+.+.+.... -.++++-.+.+....+.=--.-...+-+.+|.+|.+.|..+..-=+.|.
T Consensus 282 -rmg----qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 282 -RMG----QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred -hHH----HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 221 257777777766542211 1245555554433211100123456778899999999999987766665
Q ss_pred HHHHHH
Q 045708 378 VAQLYL 383 (1196)
Q Consensus 378 l~~~lv 383 (1196)
++.++
T Consensus 357 -a~~~~ 361 (518)
T KOG1941|consen 357 -AHECV 361 (518)
T ss_pred -HHHHH
Confidence 45554
No 91
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=36.76 E-value=32 Score=33.33 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=48.5
Q ss_pred ceeecceeeEEEEecCchhccc-ceeeeeeccCCCccccCCCCCcEEeccccc------ccccccCCCCceeEEEEEEEE
Q 045708 1076 VLAHDMTPMEVLVRNNTKEMIK-MSLSITCRDVAGENCIEGTKPTVLWSGVLN------EITMEVPPLQESKHCFSLYFL 1148 (1196)
Q Consensus 1076 ~~~~~~~~~~v~v~n~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~------~~~~~~~~~~~~~~~~~~~~l 1148 (1196)
+.+.+=..+.+.++|++.++++ ..+++.+ .++.++|++. .....|+|+++.++.+-+..-
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~-------------~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCA-------------FTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEE-------------EEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEE-------------EEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 4455567899999999999954 4666554 4667777752 236789999999999998887
Q ss_pred ecceEEEEEE
Q 045708 1149 VPGEYTLVAA 1158 (1196)
Q Consensus 1149 ~~g~~~~~~~ 1158 (1196)
-.|...+.+.
T Consensus 78 ~yG~~~~l~~ 87 (107)
T PF00927_consen 78 QYGPKQLLVD 87 (107)
T ss_dssp SHEEECCEEE
T ss_pred eEecchhcch
Confidence 7777666665
No 92
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=36.28 E-value=71 Score=33.31 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=38.0
Q ss_pred ecccEEEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEE
Q 045708 714 YEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTL 774 (1196)
Q Consensus 714 leGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v 774 (1196)
+......+.|+++|.|+.++..|++.=.. -+..+...+.. +--.|+||++++..+-|
T Consensus 82 ~s~~mvsIql~ftN~s~~~i~~I~i~~k~-l~~g~~i~~F~---~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 82 YSPSMVSIQLTFTNNSDEPIKNIHIGEKK-LPAGMRIHEFP---EIESLEPGASVTVSLGI 138 (145)
T ss_pred CCCCcEEEEEEEEecCCCeecceEECCCC-CCCCcEeeccC---cccccCCCCeEEEEEEE
Confidence 44455568999999999999988776443 13333333332 33468999998876554
No 93
>COG1470 Predicted membrane protein [Function unknown]
Probab=35.92 E-value=96 Score=37.94 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=55.3
Q ss_pred CceEEEeCCCCcEEEEeeCCCcceEEecccEEEEEEEEEeccccccce-EEEE-EecCCCcceEEEeccccccccCCCCC
Q 045708 688 VPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQ-AHIS-LSGKNQDSIISIASETLKSALPLKPG 765 (1196)
Q Consensus 688 ~l~i~VIp~qP~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~-l~~s-f~d~~~~~i~~~e~e~~~~~~~I~PG 765 (1196)
.+.+.|..+ +-.-..++..+..+.+..|++..|+|+|+|.+..+-++ |.++ +.+... ..|..+...+ ..+.|.||
T Consensus 256 dLkls~~~k-~~~ftEl~~s~~~~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~-~~Fteg~~~v-t~vkL~~g 332 (513)
T COG1470 256 DLKLSVTEK-KSYFTELNSSDIYLEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWT-AEFTEGELRV-TSVKLKPG 332 (513)
T ss_pred ceeEEEEec-cceEEEeecccceeEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcc-eEEeeCceEE-EEEEecCC
Confidence 355544433 33334444446779999999999999999999888765 4444 222111 2222221112 34789999
Q ss_pred CEEEEEEEEEE
Q 045708 766 AEVIIPVTLKA 776 (1196)
Q Consensus 766 ~s~t~~i~v~g 776 (1196)
++.++.++|+-
T Consensus 333 E~kdvtleV~p 343 (513)
T COG1470 333 EEKDVTLEVYP 343 (513)
T ss_pred CceEEEEEEec
Confidence 99999999987
No 94
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=35.50 E-value=1.5e+02 Score=34.46 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=64.7
Q ss_pred ceeecceeeEEEEecCchhcccceeee-eeccCCCccccCCCCCcEEecccccccccccCCCCceeEEEEEE---EEecc
Q 045708 1076 VLAHDMTPMEVLVRNNTKEMIKMSLSI-TCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLY---FLVPG 1151 (1196)
Q Consensus 1076 ~~~~~~~~~~v~v~n~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~---~l~~g 1151 (1196)
+.+-+-+.+-|-++|+-++++.+..=- +.|.+- |+ .-+++|=+-.+-..+|+|++++...++-+ .|.|+
T Consensus 95 l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p~-----d~--~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr 167 (285)
T PF03896_consen 95 LPAGEPVKFLVGFTNKGSEPFTVESIEASLRYPQ-----DY--SYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPR 167 (285)
T ss_pred ccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCcc-----cc--ceEEEeecccccCcccCCCCeEEEEEEEecchhcCCc
Confidence 567788899999999998876654332 444332 44 47888888888888999999999999976 59999
Q ss_pred eEEEEEEEEeecch
Q 045708 1152 EYTLVAAAVIDDAN 1165 (1196)
Q Consensus 1152 ~~~~~~~~~~~~~~ 1165 (1196)
+|.|+-.+...|+.
T Consensus 168 ~f~L~i~l~y~d~~ 181 (285)
T PF03896_consen 168 PFGLVINLIYEDSD 181 (285)
T ss_pred ceEEEEEEEEEeCC
Confidence 99999999886543
No 95
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=34.49 E-value=60 Score=37.44 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=56.7
Q ss_pred eEEEeeecCCCCceEEEEEEEeecCCCCCCCCCCCCC---CCccCc-cceeeCCCCceEEEEeecccccCCCCCCceeec
Q 045708 900 RFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHD---ATEYGY-PKTRIDRDYSARVLIPLEHFKLPILDGSFFVKD 975 (1196)
Q Consensus 900 ~~l~l~l~N~~~~~f~v~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~~~~~~rvl~p~~~~~lp~~~~~~~~~~ 975 (1196)
-++-++|.|-+.++|+|++-.----....-.--|.|+ .|-+.+ ..++|..+.+.|-++=+++|.+|. .+.++..
T Consensus 183 lyf~~~l~N~Sni~ydID~irfki~DKK~~KrTa~Qe~ei~Pl~~~n~~~~i~gk~~~r~V~vl~KfTiPd--dKvL~IE 260 (285)
T TIGR03780 183 LYFHTSLENKTNIPFDIDFIRFKIVDKKKAKRTAMQEIEIDPLRVYNSVIVIAGKSTYRTVYVLPKFTIPD--DKLLTIE 260 (285)
T ss_pred EEEEEEEEcCCCCCcEeEEEEEEEEecchhhcceeeeEEEEeEEEeccccEEcCCceEEEEEEEecccCCC--CcEEEEE
Confidence 4588999999999999986543111111111222232 233344 567899999999999999999998 3444322
Q ss_pred ccCCCCCCCCcccccccc
Q 045708 976 MQSNGTSGSRSSSFSEKN 993 (1196)
Q Consensus 976 ~~~~~~~~~r~~~~~~~~ 993 (1196)
-. |-.|||...|..++
T Consensus 261 i~--EknGGRh~~l~i~n 276 (285)
T TIGR03780 261 MY--EKNGGRHQTLRIDN 276 (285)
T ss_pred EE--EcCCceeEEEEECH
Confidence 21 22378888774443
No 96
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=34.33 E-value=2.4e+02 Score=26.84 Aligned_cols=57 Identities=9% Similarity=0.215 Sum_probs=41.4
Q ss_pred ccEEEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 716 GEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 716 GE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
+....+.++..|.+..|+..+.+.+.- +.-+.+...... .-.|+||+.++-.+.|.+
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~av---pk~~~l~l~~~s-~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAV---PKSLKLQLQPPS-SPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEc---ccceEEEEcCCC-CCccCCCCCEEEEEEEEC
Confidence 445679999999999999999988864 222333332222 246999999999999988
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.87 E-value=31 Score=41.10 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=52.4
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhc
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKS 296 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks 296 (1196)
+...+|-||+--+.|.+|-.+|..|+..-.+.+||.|+|-|+|- .++ +.+-..+.++++.+|...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~---------~g~-----~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ---------LGE-----PEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH---------cCC-----hHHHHHHHHHHHHHhcCC
Confidence 55678999999999999999999999988899999999999993 332 124445578888777654
No 98
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.58 E-value=2.3e+02 Score=35.54 Aligned_cols=141 Identities=16% Similarity=0.181 Sum_probs=78.2
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhcc-CCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCC
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARL-TADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIP 299 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~-~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p 299 (1196)
-+|-|||+.|+++.|-+.|..|..+=++ ...||-+|-++=+ . .-.++|++.|.++..-
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~---------e------------~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG---------E------------GEHDQAMAAYFTAARL 375 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh---------c------------chHHHHHHHHHHHHHh
Confidence 4799999999999999999998876554 3344444432211 0 0135566666554321
Q ss_pred CCCCCCCCchhhHHHH----HHHHHHHhh----------------------ccchHHHHHHHHhhccCCCCCCCH-HHHH
Q 045708 300 DNAQRVSPLSFELEAT----LKLARFLCR----------------------RELAKDVVELLTSAADGAKSLIDA-SDRL 352 (1196)
Q Consensus 300 ~n~e~~p~l~~~~Ea~----Lr~a~~L~~----------------------~~~~~ei~~~L~~a~~~~~~ll~~-~dqi 352 (1196)
....++|.|=+-+|.. +++|..+-. .+-..++...+..++..-.+.+.. .-=.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 1111445543444543 445542221 011245666666665332222210 1124
Q ss_pred HHHHHHHHHhccCCchhhHHHHHHHHHHHH
Q 045708 353 ILYIEIARLFGTLDYQRKAAFFSRQVAQLY 382 (1196)
Q Consensus 353 ~i~~~lA~vy~~LGf~RK~AF~lR~l~~~l 382 (1196)
.+...|+.+|..++..+-+-.+.|.++...
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 567788888888888877777777765433
No 99
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=33.56 E-value=4.8e+02 Score=33.82 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=69.9
Q ss_pred eEEecCeEEEEEEEECCC----cceEEEeEEEEEeecceeeeeeeeEEECCCCeeEEEEEEEeCeeeeEEEceEEEEEec
Q 045708 573 IWVVGEPVQVLVELANPC----GFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFG 648 (1196)
Q Consensus 573 ~~V~gE~~ev~VtLqNPf----~feL~I~sI~L~teGv~Fes~~~si~L~P~S~~~I~Lsg~P~~~G~L~I~G~~~~v~g 648 (1196)
..++||++.+.|..+|.- .|.|.+.+..+... .| ...-.+.++|++.|.-+|.- ++.+
T Consensus 397 ~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~--~Y-------------~~~~~~~f~P~~~G~Y~IeV---~vKd 458 (667)
T PRK14081 397 HILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI--DY-------------GKNNWVNFIPEEKGNYELEV---RVKD 458 (667)
T ss_pred ceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe--ec-------------ccccEEEEEECCCeeEEEEE---EEec
Confidence 377899999998888884 23333322222111 01 12345678899999988742 2222
Q ss_pred ccccccccchhhhhhhhccCCcccCCccccCCCCccCcCCceEEEeCCCCc-EEEEeeCCCcceEEecccEEEEEEEEEe
Q 045708 649 VITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPL-LVSNVVGGDGAIILYEGEIRDVWISLAN 727 (1196)
Q Consensus 649 ~~~e~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~~~~~~l~i~VIp~qP~-L~i~~ts~~~~vmLleGE~~~f~ItL~N 727 (1196)
-.+...|+. .....++|-..+|. +.-.+. ..--..+.|+..+|++..+|
T Consensus 459 k~S~~~yD~----------------------------~k~v~l~V~e~~P~~i~~il~--~~~~~~~vg~~i~~~~~~~~ 508 (667)
T PRK14081 459 KYSDKEYDA----------------------------HTIVYIKVHEYIPAEIDYILL--PVKEYYLVGDDIEIEVIIQN 508 (667)
T ss_pred ccCchhccc----------------------------ceEEEEEEeccCceeeeeEEe--cccccEEeCCEEEEEEEEeC
Confidence 212111211 12456889888997 444343 23345899999999999999
Q ss_pred ccccccceE
Q 045708 728 AGTVPVEQA 736 (1196)
Q Consensus 728 ~S~~pV~~l 736 (1196)
..++-..|.
T Consensus 509 ~k~v~y~y~ 517 (667)
T PRK14081 509 TKDVLIKYI 517 (667)
T ss_pred CCeEEEEEE
Confidence 887766554
No 100
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=33.29 E-value=1.3e+02 Score=33.61 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred EeCCCCcEEEEeeCCCcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcceEEEec----------ccc-ccccC
Q 045708 693 VVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIAS----------ETL-KSALP 761 (1196)
Q Consensus 693 VIp~qP~L~i~~ts~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~----------e~~-~~~~~ 761 (1196)
|-+.+|+- -+.. +..+.+.-||+.....+.+|.|+.||-= ..+|.+.. |.+ =++..
T Consensus 117 v~~~lpW~-F~P~--q~~v~V~pGE~~lv~Y~a~N~sd~~i~G----------~A~ynV~P~~Ag~YFnKieCFCF~eQ~ 183 (232)
T PTZ00128 117 TGSTMPWE-FEPL--QKEVEVLPGETALAFYRAKNRSDKPVIG----------VATYHIAPPEAGLYFNKIQCFCFEEQR 183 (232)
T ss_pred CCCCCCce-EEee--eeEEEEcCCCeEEEEEEEECCCCCcEEE----------EEecccCHHHHhhhccceeeecccccc
Confidence 44555543 2222 6788899999999999999999988721 22232221 111 12358
Q ss_pred CCCCCEEEEEEEEEEcccCC
Q 045708 762 LKPGAEVIIPVTLKAWQHGP 781 (1196)
Q Consensus 762 I~PG~s~t~~i~v~g~k~g~ 781 (1196)
|+|||++.+|+...= .|.+
T Consensus 184 L~pgE~~~MPV~F~I-DP~i 202 (232)
T PTZ00128 184 LNPHEEVDMPVFFYI-DPDI 202 (232)
T ss_pred cCCCCeEecCEEEEE-CCCC
Confidence 999999999999998 8876
No 101
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=33.14 E-value=3.2e+02 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=30.7
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHH
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGS 262 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi 262 (1196)
..-.+|.+++..|++.+|+.+|.+|+....... |.+.++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~l 78 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNM 78 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHH
Confidence 456678999999999999999999998654332 334444444
No 102
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.76 E-value=39 Score=30.15 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.3
Q ss_pred hcCChHHHHHHHHHHHHHh
Q 045708 228 LAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 228 LaG~~~DAL~~Y~eAi~~l 246 (1196)
..|+|.+|+.+|.+|++.+
T Consensus 17 ~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HTTSHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 3699999999999999754
No 103
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=32.61 E-value=2.2e+02 Score=35.35 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=50.1
Q ss_pred CcceEEecccEEEEEEEEEeccccccceEEEEEecCC--CcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 708 DGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKN--QDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 708 ~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~--~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
..+..+..|++..++++|+|.++.++..+.+++.++. ..+++.-+. ..--..+.||++..+.+.+.+
T Consensus 158 ~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~i~~~~~--~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 158 SSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLGPIYSAND--TPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred cCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceecccccccc--ceeeeeeCCCceEEEEEEEEe
Confidence 4567789999999999999999999999999997622 122222221 111236889999999999998
No 104
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=32.48 E-value=1.7e+02 Score=28.07 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred cceeEEecCeEEEEEEEECCCcceEEEeEEEEEeecceeeeeeeeEEECCCCeeEEEEEEEeCeeeeEEE
Q 045708 570 QELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTI 639 (1196)
Q Consensus 570 ~~~~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes~~~si~L~P~S~~~I~Lsg~P~~~G~L~I 639 (1196)
.....-+|+++++.++=.+.-.-++.+.+ ...+..|+|+.+.+++ ++|..+|+..+
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~------------~~~~~~l~~g~~~~~~--f~~~~~G~y~~ 90 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD------------LGISKVLPPGETATVT--FTPLKPGEYEF 90 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG------------GTEEEEE-TT-EEEEE--EEE-S-EEEEE
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC------------CceEEEECCCCEEEEE--EcCCCCEEEEE
Confidence 46668899988877765555655554443 3445889999776655 47999998764
No 105
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.29 E-value=38 Score=31.34 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.4
Q ss_pred hcCChHHHHHHHHHHHHHhc
Q 045708 228 LAGSPVDANAHYSTALELAR 247 (1196)
Q Consensus 228 LaG~~~DAL~~Y~eAi~~lk 247 (1196)
.+|+|.+|+.+|.+|++.+-
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HccCHHHHHHHHHHHHHHHH
Confidence 47999999999999998663
No 106
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=32.01 E-value=2.4e+02 Score=28.45 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=44.3
Q ss_pred ceeEEecCeEEEEEEEECCCcceEEE----eEEEEEeecc-eee------------------eeeeeEEECCCCeeEEEE
Q 045708 571 ELIWVVGEPVQVLVELANPCGFDLRV----DSIYLSVHSG-NFD------------------AFPISVELPPNSSKVITL 627 (1196)
Q Consensus 571 ~~~~V~gE~~ev~VtLqNPf~feL~I----~sI~L~teGv-~Fe------------------s~~~si~L~P~S~~~I~L 627 (1196)
++.+-.|+.-++.|.++|.-.=++.+ .+-.=...|+ .|. ..+..++|+|++++.|++
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~ 99 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTF 99 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEE
Confidence 34456677888999999975544444 3333233342 221 224459999999999999
Q ss_pred EE-EeCee--eeEEEceEEE
Q 045708 628 SG-IPTSV--GPVTIPGCTV 644 (1196)
Q Consensus 628 sg-~P~~~--G~L~I~G~~~ 644 (1196)
.+ .|... |. .+.|+.+
T Consensus 100 ~i~~P~~~f~G~-ilGGi~~ 118 (121)
T PF06030_consen 100 TIKMPKKAFDGI-ILGGIYF 118 (121)
T ss_pred EEEcCCCCcCCE-EEeeEEE
Confidence 99 45542 43 3444443
No 107
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.57 E-value=56 Score=36.73 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=45.5
Q ss_pred hhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhh
Q 045708 211 KKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLV 268 (1196)
Q Consensus 211 kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL 268 (1196)
+.|-...+...||..|+.+|+|.+|++.|..+....|+.+-|.=....|..+. |+..+
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 35566667778999999999999999999999888888776655666666654 65555
No 108
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.35 E-value=4.3e+02 Score=27.03 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=53.3
Q ss_pred hhHhhhcCChHHHHHHHHHHHHHhccCCc-------------hhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHH
Q 045708 223 GDYCLLAGSPVDANAHYSTALELARLTAD-------------YFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSV 289 (1196)
Q Consensus 223 GDl~LLaG~~~DAL~~Y~eAi~~lk~~~D-------------~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~a 289 (1196)
|.-+|+.|.|.+|-.+|..|.+..|...+ |-|+++|+=|+ +.. ++-......|
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L---------gry-----~e~L~sA~~a 81 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL---------GRY-----DECLQSADRA 81 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT---------T-H-----HHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh---------ccH-----HHHHHHHHHH
Confidence 44568899999999999999999998532 22333333332 211 2333446677
Q ss_pred HHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHh------hccchHHHHHHHHhh
Q 045708 290 ILHYRKSFIPDNAQRVSPLSFELEATLKLARFLC------RRELAKDVVELLTSA 338 (1196)
Q Consensus 290 i~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~------~~~~~~ei~~~L~~a 338 (1196)
+..++|.+ .|.-. |--+|++-++. ..+...|++..+..+
T Consensus 82 L~YFNRRG---------EL~qd-eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 82 LRYFNRRG---------ELHQD-EGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHH-----------TTST-HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhhcc---------ccccc-cchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 88888865 12212 67777766554 344556666655543
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=30.49 E-value=2.7e+02 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.1
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhc
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELAR 247 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk 247 (1196)
.+|..++..|++.+|+..|.+++....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~ 31 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP 31 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 467888999999999999999987644
No 110
>PRK12370 invasion protein regulator; Provisional
Probab=30.37 E-value=4.3e+02 Score=33.32 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCC-chhhHHHhH
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTA-DYFWYAGAL 259 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~-D~LWlAsAL 259 (1196)
....-.+|.+++..|++.+|+..|..|+.+--..- .|.++|-++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 382 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNL 382 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33445789999999999999999999998643322 244444433
No 111
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=1.3e+02 Score=33.37 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=47.7
Q ss_pred EecccEEEEEEEEEeccc--cccceEEEEEecCCCcceEEEeccccccccCCCCCCEEEEEEEEEE
Q 045708 713 LYEGEIRDVWISLANAGT--VPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 713 LleGE~~~f~ItL~N~S~--~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g 776 (1196)
+..|+-.+|-|-++|.|. .-|+++.-||.=++.-..+.=+.+...-...++|+..+|+++....
T Consensus 72 ~pagk~vkfLiGftNkG~edfvV~~~eaSfr~P~D~~~~iQNft~~~~N~~Vpp~~qaT~~Y~F~~ 137 (261)
T KOG1631|consen 72 FPAGKPVKFLIGFTNKGEEDFVVEYAEASFRYPTDHSYHIQNFTALEYNRSVPPSEQATLPYGFAV 137 (261)
T ss_pred CCCCCceEEEEEeccCCceeEEEEEEeeeeecCccHHHHHhhhhhhhccccCCCcceeeeeeeeee
Confidence 889999999999999995 6688888888754433333223333333478999999999998765
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=29.76 E-value=22 Score=30.64 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.1
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHHh
Q 045708 222 IGDYCLLAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~l 246 (1196)
+|..++..|+|.+|++.|.+++..-
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~ 27 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD 27 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5889999999999999999988544
No 113
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=29.46 E-value=1.6e+02 Score=31.97 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=46.7
Q ss_pred CcceEEecccEEEEEEEEEeccccccceEEEEEecCCCcceEEEec----------ccc-ccccCCCCCCEEEEEEEEEE
Q 045708 708 DGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIAS----------ETL-KSALPLKPGAEVIIPVTLKA 776 (1196)
Q Consensus 708 ~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~----------e~~-~~~~~I~PG~s~t~~i~v~g 776 (1196)
+..+.+.-||......+.+|.|+.||-= ..+|.+.. |.+ =++..|+|||++.+|+...=
T Consensus 85 q~~v~V~pGE~~~~~y~a~N~sd~~i~g----------~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPV~F~I 154 (188)
T PRK05089 85 QRSVDVHPGELNLVFYEAENLSDRPIVG----------QAIPSVTPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYV 154 (188)
T ss_pred eeEEEEcCCCeEEEEEEEECCCCCcEEE----------EEecccCHHHHhhhccceeeecccCcccCCCCeEecCEEEEE
Confidence 5678888999999999999999988721 22333221 111 12468999999999999998
Q ss_pred cccCC
Q 045708 777 WQHGP 781 (1196)
Q Consensus 777 ~k~g~ 781 (1196)
.|.+
T Consensus 155 -DP~i 158 (188)
T PRK05089 155 -DPDL 158 (188)
T ss_pred -CCCc
Confidence 8876
No 114
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=29.43 E-value=2.2e+02 Score=31.24 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=32.0
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGAL 259 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsAL 259 (1196)
.+|+=.+-+|++.+|-.+|.+|++-.-...-.+-+|-|.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~ 132 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQ 132 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHH
Confidence 378888899999999999999998887776666666554
No 115
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.25 E-value=4.1e+02 Score=33.99 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=27.8
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHHhcc-CCchhhHHHhHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALELARL-TADYFWYAGALE 260 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~lk~-~~D~LWlAsALE 260 (1196)
-+|-.+-.+|..+.|+++|.+|+++=-. ...|+=+|-.+-
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH
Confidence 3677788889999999999998864333 234555666553
No 116
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=29.16 E-value=1.7e+02 Score=30.73 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=37.7
Q ss_pred EecCeEE--EEEEEECCCcceEEEeEEEEEe--ecceeee--eeeeEEECCCCeeEEEEEE
Q 045708 575 VVGEPVQ--VLVELANPCGFDLRVDSIYLSV--HSGNFDA--FPISVELPPNSSKVITLSG 629 (1196)
Q Consensus 575 V~gE~~e--v~VtLqNPf~feL~I~sI~L~t--eGv~Fes--~~~si~L~P~S~~~I~Lsg 629 (1196)
|.+...| ..+.++||=.|+|.|.+++-.. +|+..-. .-..++++|+|..++-+++
T Consensus 45 vt~s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 45 VTNSETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred EeccceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 4455333 4577899999999999987644 4554432 2334999999988776665
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=29.15 E-value=8.6e+02 Score=32.26 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHH
Q 045708 318 LARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQ 380 (1196)
Q Consensus 318 ~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l~~ 380 (1196)
.+..+..++...++.+.+.++.......- .......+..++.++-..|-...+.=.++.+..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555666677777666654421111 123455667778888888876666555555433
No 118
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.75 E-value=2.7e+02 Score=30.11 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=44.4
Q ss_pred CcceEEecccEEEEEEEEEeccccccceE-EEEEecCCCcceE--EEeccccccccCCCCCCEEEEEEEEEEcccCC
Q 045708 708 DGAIILYEGEIRDVWISLANAGTVPVEQA-HISLSGKNQDSII--SIASETLKSALPLKPGAEVIIPVTLKAWQHGP 781 (1196)
Q Consensus 708 ~~~vmLleGE~~~f~ItL~N~S~~pV~~l-~~sf~d~~~~~i~--~~e~e~~~~~~~I~PG~s~t~~i~v~g~k~g~ 781 (1196)
+..+.+.-||+.....+-+|.|+.||.-- .+++. +.++.-| .+|.=.+. +..|+|||++.+|+...= .|.+
T Consensus 84 q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~-P~~Ag~YF~KveCFCFt-eq~L~pgE~vemPV~FfV-Dpd~ 157 (195)
T COG3175 84 QREVYVRPGETNLIFYEAENLSDKPITGQATYNVA-PGQAGAYFNKVECFCFT-EQTLKPGETVEMPVVFFV-DPDF 157 (195)
T ss_pred CceeEeccCceEEEEEEEecCCCCCceeEEecccC-hhHhhhheeeeeEEEee-ecccCCCCeEeccEEEEE-Cccc
Confidence 44566677999999999999999887221 11110 1111111 11111122 357999999999999998 7776
No 119
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=28.50 E-value=2.1e+02 Score=30.45 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=33.9
Q ss_pred EEEEEEEEeccccccceEEEEE-e---cCCCcceEEE--eccccccccCCCCCCEEEEEEEEEEcccC
Q 045708 719 RDVWISLANAGTVPVEQAHISL-S---GKNQDSIISI--ASETLKSALPLKPGAEVIIPVTLKAWQHG 780 (1196)
Q Consensus 719 ~~f~ItL~N~S~~pV~~l~~sf-~---d~~~~~i~~~--e~e~~~~~~~I~PG~s~t~~i~v~g~k~g 780 (1196)
....+.|+|.+..|+-.+.+++ | |.++..-.+- -...+.....+.||..+++++.+.|..|.
T Consensus 78 s~a~L~i~~~~~~pLpaf~~~veWG~ld~~t~k~l~~~~qsq~~~~~~~llp~s~~~i~L~L~GvtP~ 145 (165)
T PF11622_consen 78 SRATLRIQNLSSAPLPAFSATVEWGQLDPTTGKPLEVDSQSQLINAPASLLPGSWVDIELRLSGVTPE 145 (165)
T ss_dssp EEEEEEEEESSSS----EEEEEEEEEE-S-SSS--EEEEEEEEEEE----SSS-EEEEEEEE-S--GG
T ss_pred cEEEEEEeCCCCCcccCceeEEEEccccCCCCCccccchhceeEccccccCCCcceeEEEEECCCCHH
Confidence 4678999999999999888887 3 2333332221 12345567789999999999999997776
No 120
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.63 E-value=5.8e+02 Score=29.29 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=24.4
Q ss_pred cceeeehhHhhhcCChHHHHHHHHHHHHH
Q 045708 217 RAQKTIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 217 R~~KvlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.....+|.+++..|+|++|+..|..|+++
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45567899999999999999999999864
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.55 E-value=5.7e+02 Score=25.76 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=58.7
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCC
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFI 298 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~ 298 (1196)
.-.+|+.++-.|++..|...|..++... .|.-|..-|.=.++.+. +.. .++.+|+..+....
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~-~~~-------------~~~d~Al~~L~~~~- 112 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARIL-LQQ-------------GQYDEALATLQQIP- 112 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHH-HHc-------------CCHHHHHHHHHhcc-
Confidence 3458899999999999999999988733 45555544444443222 221 12677888886532
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhh
Q 045708 299 PDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSA 338 (1196)
Q Consensus 299 p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a 338 (1196)
.+ .+........+.++.+.+...++.+.+.+|
T Consensus 113 -~~-------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 113 -DE-------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred -Cc-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 11 122334445667777777777777766654
No 122
>PRK12370 invasion protein regulator; Provisional
Probab=27.53 E-value=3.3e+02 Score=34.33 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.2
Q ss_pred hhcCChHHHHHHHHHHHHHhc
Q 045708 227 LLAGSPVDANAHYSTALELAR 247 (1196)
Q Consensus 227 LLaG~~~DAL~~Y~eAi~~lk 247 (1196)
...|++..|+.+|..|+++--
T Consensus 315 ~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred ccchHHHHHHHHHHHHHhcCC
Confidence 367889999999999997643
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=27.36 E-value=4.6e+02 Score=23.62 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=49.8
Q ss_pred cCChHHHHHHHHHHHHHhccC-CchhhH--HHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 045708 229 AGSPVDANAHYSTALELARLT-ADYFWY--AGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRV 305 (1196)
Q Consensus 229 aG~~~DAL~~Y~eAi~~lk~~-~D~LWl--AsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~ 305 (1196)
.|.|.+|+..|..+++.-... ++..|+ |.++ .-. .++.+|+..+++.. .+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~------~~~---------------~~y~~A~~~~~~~~--~~---- 54 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCY------FQQ---------------GKYEEAIELLQKLK--LD---- 54 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHH------HHT---------------THHHHHHHHHHCHT--HH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH------HHC---------------CCHHHHHHHHHHhC--CC----
Confidence 589999999999999988753 344444 3222 111 23788888887721 01
Q ss_pred CCchhhHHHHHHHHHHHhhccchHHHHHHHHhh
Q 045708 306 SPLSFELEATLKLARFLCRRELAKDVVELLTSA 338 (1196)
Q Consensus 306 p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a 338 (1196)
+-. .++..-+|+.+...+...++.+.|.++
T Consensus 55 -~~~--~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 55 -PSN--PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -HCH--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -CCC--HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 111 345555588888888888888887654
No 124
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.31 E-value=3e+02 Score=30.52 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=33.6
Q ss_pred hhhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCc
Q 045708 210 AKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTAD 251 (1196)
Q Consensus 210 ~kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D 251 (1196)
.|.+-..--.|.-|+=++--|.|..|.+.|++|++++-.+.-
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 343444445677899999999999999999999998887654
No 125
>TIGR03780 Bac_Flav_CT_N Bacteroides conjugative transposon TraN protein. Members of this family are the TraN protein encoded by transfer region genes of conjugative transposons of Bacteroides. The family is related to conjugative transfer proteins VirB9 and TrbG of Agrobacterium Ti plasmids.
Probab=27.28 E-value=1.8e+02 Score=33.77 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.0
Q ss_pred cccEEEEEEEEEecccc--ccceEEEEEecC
Q 045708 715 EGEIRDVWISLANAGTV--PVEQAHISLSGK 743 (1196)
Q Consensus 715 eGE~~~f~ItL~N~S~~--pV~~l~~sf~d~ 743 (1196)
.|...-|.++|+|.|++ .|||++|.+.|+
T Consensus 179 ~~d~lyf~~~l~N~Sni~ydID~irfki~DK 209 (285)
T TIGR03780 179 HNDLLYFHTSLENKTNIPFDIDFIRFKIVDK 209 (285)
T ss_pred ECCEEEEEEEEEcCCCCCcEeEEEEEEEEec
Confidence 46677799999999975 599999999996
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.00 E-value=52 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=11.7
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHHh
Q 045708 222 IGDYCLLAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~l 246 (1196)
.|.++...|+|..|+..|..+++..
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3444444444444444444444433
No 127
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=26.82 E-value=2e+02 Score=30.57 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=31.4
Q ss_pred ccEEEEEEEEEeccccccce----EEEEEecC------CCcceEEEecccc-----ccccCCCCCCEEEEEEEEEEcccC
Q 045708 716 GEIRDVWISLANAGTVPVEQ----AHISLSGK------NQDSIISIASETL-----KSALPLKPGAEVIIPVTLKAWQHG 780 (1196)
Q Consensus 716 GE~~~f~ItL~N~S~~pV~~----l~~sf~d~------~~~~i~~~e~e~~-----~~~~~I~PG~s~t~~i~v~g~k~g 780 (1196)
|......|+|+|.|..++.- |.|+.-.. .+-.+-.++-++. ..-..|+||++++|+|.-.+|...
T Consensus 29 ~~c~~~~ltl~n~~~~~~~~~dW~IYf~~ir~i~~~~s~~f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~w~~~ 108 (164)
T PF03173_consen 29 ASCFRAELTLTNPGDAPLPKSDWAIYFSSIRPILQVDSDQFKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEYWQVS 108 (164)
T ss_dssp G-EEEEEEEEEE-SS-B------EEEEE-SS-EEEESSTTEEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES---S
T ss_pred ccceEEEEEEEcCCCccCCCCCeEEEEecceeeeccCCCCeEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccccEEE
Confidence 55677899999999766544 44443211 1111112222321 222579999999999999997765
Q ss_pred C
Q 045708 781 P 781 (1196)
Q Consensus 781 ~ 781 (1196)
-
T Consensus 109 ~ 109 (164)
T PF03173_consen 109 E 109 (164)
T ss_dssp G
T ss_pred E
Confidence 3
No 128
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=26.35 E-value=1.4e+02 Score=36.58 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.6
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHH
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.--+|..+...|+|.+|+..|..|+++
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL 104 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALEL 104 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344688999999999999999999986
No 129
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=26.09 E-value=5.6e+02 Score=32.97 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=13.2
Q ss_pred eeehhHhhhcCChHHHHHHHHHHHH
Q 045708 220 KTIGDYCLLAGSPVDANAHYSTALE 244 (1196)
Q Consensus 220 KvlGDl~LLaG~~~DAL~~Y~eAi~ 244 (1196)
..+|..++..|++.+|.+.|.+++.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3445555555555555555555543
No 130
>PF10610 Tafi-CsgC: Thin aggregative fimbriae synthesis protein; InterPro: IPR014491 Thin aggressive fibres known as curli fibres or fimbriae (curli; Tafi) are cell-surface protein polymers found in Salmonella typhimurium and Escherichia coli that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation []. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), which differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp and the controlling operon termed agf; however subsequent isolation of the homologous operon in E coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix. The gene agfC is found to be transcribed at low levels, localised to the periplasm in a mature form, and in combination with AgfE is important for AgfA extracellular assembly, which facilitates the synthesis of Tafi. The genes involved in Tafi production are organised into two adjacent divergently transcribed operons, agfBAC and agfDEFG, both of which are required for biosynthesis and assembly [].; PDB: 2XSK_A 2Y2T_A 2Y2Y_A.
Probab=26.01 E-value=3.5e+02 Score=26.68 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=35.2
Q ss_pred EEEEECCCcceEEEeEEEEEeecceeeeeeeeEEECCCCeeE---EEEEEEeCeeeeE
Q 045708 583 LVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKV---ITLSGIPTSVGPV 637 (1196)
Q Consensus 583 ~VtLqNPf~feL~I~sI~L~teGv~Fes~~~si~L~P~S~~~---I~Lsg~P~~~G~L 637 (1196)
.|+|.||+...++|..++=-..|-.-......+.|+++.... +.+.+.|...-.+
T Consensus 26 ~Vtla~~C~Cqv~v~~~R~G~~G~S~s~Q~~~l~i~ANqpi~L~rls~ni~p~D~v~I 83 (106)
T PF10610_consen 26 QVTLAHPCECQVQVLSVREGSSGQSTSQQKNTLSIPANQPIALSRLSFNISPGDKVKI 83 (106)
T ss_dssp EEE-SS-EEEEEEEEEEEEETTEEEEEEEEEEEEE-SSSEEE---EEEE--TT-EEEE
T ss_pred EEEecCCeeEEEEEEEEEccCCCceEEEeeeeEEcCCCCCeecceEEEEeCCCCeEEE
Confidence 599999999999999888777776555566678888887753 4455555444333
No 131
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.96 E-value=49 Score=24.06 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=21.1
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHH
Q 045708 222 IGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
+|..+...|++..|++.|.+.++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 688899999999999999998764
No 132
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=3.5e+02 Score=30.90 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=29.8
Q ss_pred ehhHhhhcCChHHHHHHHHHHHHHhcc------CCchhhHH
Q 045708 222 IGDYCLLAGSPVDANAHYSTALELARL------TADYFWYA 256 (1196)
Q Consensus 222 lGDl~LLaG~~~DAL~~Y~eAi~~lk~------~~D~LWlA 256 (1196)
-||=.+-+|+|.+|...|.+|+..++. ..|--|+-
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~e 224 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLE 224 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence 478888899999999999999999875 57777763
No 133
>PRK15331 chaperone protein SicA; Provisional
Probab=25.58 E-value=4.9e+02 Score=27.85 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=37.8
Q ss_pred hhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhhcCC
Q 045708 223 GDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFI 298 (1196)
Q Consensus 223 GDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks~~ 298 (1196)
|--+.+.|+|.||.+.|.-....=.-..|| |+|=| +|. +....|..|+.+|..+..
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y-~~GLa----a~~---------------Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDY-TMGLA----AVC---------------QLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-HHHHH----HHH---------------HHHHHHHHHHHHHHHHHH
Confidence 556788999999999999766544445554 65422 232 233458899999987654
No 134
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=25.45 E-value=1.1e+02 Score=37.40 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=43.0
Q ss_pred ecccEEEEEEE-EEeccccccceE--EEEEecCC------CcceEEEeccccccccCCCCCCEEEEEEEEEEcccCC
Q 045708 714 YEGEIRDVWIS-LANAGTVPVEQA--HISLSGKN------QDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGP 781 (1196)
Q Consensus 714 leGE~~~f~It-L~N~S~~pV~~l--~~sf~d~~------~~~i~~~e~e~~~~~~~I~PG~s~t~~i~v~g~k~g~ 781 (1196)
..||...=+|+ |+|.|++.|.|= .+.+.+.. ..+-|-.+ .....|.||++..|+|+....++|.
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd----~~~gvilPGe~~~~~~~F~s~~~Gi 316 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFD----TSSGVILPGETRNFPFMFKSRKVGI 316 (426)
T ss_pred ccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEe----CCCCEECCCceEEEEEEEeCCCceE
Confidence 56888888888 999999888542 22221111 11122222 3457899999999999999977775
No 135
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=25.43 E-value=57 Score=30.21 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.2
Q ss_pred hcCChHHHHHHHHHHHHHhc
Q 045708 228 LAGSPVDANAHYSTALELAR 247 (1196)
Q Consensus 228 LaG~~~DAL~~Y~eAi~~lk 247 (1196)
.+|+|.+|+..|.+|++.+-
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 57999999999999997553
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.26 E-value=3.6e+02 Score=35.28 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=67.4
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhh--HHHhH-------HHHH-HHHhhhccCC-CchhhHH----
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFW--YAGAL-------EGSV-CALLVDRMGQ-KDAVLEE---- 280 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LW--lAsAL-------EGi~-~~llL~~~~~-~~~~~~~---- 280 (1196)
-.....+|++-...|+++||+.+|..+++..= .+--.| +|-+| |.+. +-.+++.... .+.....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999887542 221112 12111 1111 1111111000 0000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccC
Q 045708 281 EVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADG 341 (1196)
Q Consensus 281 ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~ 341 (1196)
+-.-++.+|+.+|+|...+ + | .. .++.+.++..|...+...++...+.+|+..
T Consensus 165 ~~~g~~~~A~~~y~~~~~~-~----p--~~-~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQ-H----P--EF-ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHhcchHHHHHHHHHHHhc-C----C--Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0112488999999887631 1 1 12 378888999998888888888888776543
No 137
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=25.07 E-value=4.8e+02 Score=25.35 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=30.4
Q ss_pred cCeEEEEEEEECCCcceEE--EeEEEEEe------eccee-----------eeeeeeEEECCCCeeEEEEEEEeCe
Q 045708 577 GEPVQVLVELANPCGFDLR--VDSIYLSV------HSGNF-----------DAFPISVELPPNSSKVITLSGIPTS 633 (1196)
Q Consensus 577 gE~~ev~VtLqNPf~feL~--I~sI~L~t------eGv~F-----------es~~~si~L~P~S~~~I~Lsg~P~~ 633 (1196)
+....+.|+|+|-=.-++. |+.....+ +|-.+ ...+..|+|+|+++..|.+++.|.+
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 4447888899886553332 33332222 22211 1234569999999999999998854
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.85 E-value=74 Score=39.70 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhh--HHHhHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHhh
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFW--YAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRK 295 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LW--lAsALEGi~~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~k 295 (1196)
++-.||=||-|.|.|+-|...|..|+ ..|..+--|| ||++|= .+ .+..+||+.|+|
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL-~v~Pnd~~lWNRLGAtLA----------N~-----------~~s~EAIsAY~r 489 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAAL-QVKPNDYLLWNRLGATLA----------NG-----------NRSEEAISAYNR 489 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHH-hcCCchHHHHHHhhHHhc----------CC-----------cccHHHHHHHHH
Q ss_pred cCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhc
Q 045708 296 SFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAA 339 (1196)
Q Consensus 296 s~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~ 339 (1196)
+. .+-|. ++++---++--..-.+.++|+++.|..|+
T Consensus 490 AL------qLqP~--yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 490 AL------QLQPG--YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HH------hcCCC--eeeeehhhhhhhhhhhhHHHHHHHHHHHH
No 139
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=23.50 E-value=8.2e+02 Score=33.91 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhc
Q 045708 286 YNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAA 339 (1196)
Q Consensus 286 ~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~ 339 (1196)
+++|+..|+++... .|. ..++.+.++..+...+...++.+.+.+++
T Consensus 367 ~~eA~~~~~~Al~~-----~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 367 LAQAERLYQQARQV-----DNT---DSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55666666665420 011 12455555666665555555555555554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.44 E-value=4.8e+02 Score=25.34 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=56.4
Q ss_pred ceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhhc
Q 045708 218 AQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRKS 296 (1196)
Q Consensus 218 ~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~ks 296 (1196)
....+|..++..|++.+|+..|..++..- ..+-..|. .++ |.... .++.+|+..|.++
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~-----~la~~~~~~---------------~~~~~A~~~~~~~ 77 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWL-----GLAACCQML---------------KEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHH-----HHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 34578999999999999999999987642 22223332 222 11111 1245566666654
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccC
Q 045708 297 FIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADG 341 (1196)
Q Consensus 297 ~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~ 341 (1196)
... .|. ..+....++.++...+...++.+.+.+++..
T Consensus 78 ~~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 78 AAL-----DPD---DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred Hhc-----CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 310 011 1245555667676677777888888776654
No 141
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=23.28 E-value=4.7e+02 Score=35.72 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.4
Q ss_pred eehhHhhhcCChHHHHHHHHHHHHH
Q 045708 221 TIGDYCLLAGSPVDANAHYSTALEL 245 (1196)
Q Consensus 221 vlGDl~LLaG~~~DAL~~Y~eAi~~ 245 (1196)
.+|..++..|++.+|+..|..|+..
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4588889999999999999998864
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.03 E-value=46 Score=33.80 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=24.3
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHH
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTAL 243 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi 243 (1196)
+...-++||.++..|++.+|...|..|+
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 3455679999999999999999999884
No 143
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=22.86 E-value=2.1e+02 Score=28.91 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=36.4
Q ss_pred EEEEEEEeccccccceEEE--EEecCCCcceEEEecc-ccccccCCCCCCEEEEE
Q 045708 720 DVWISLANAGTVPVEQAHI--SLSGKNQDSIISIASE-TLKSALPLKPGAEVIIP 771 (1196)
Q Consensus 720 ~f~ItL~N~S~~pV~~l~~--sf~d~~~~~i~~~e~e-~~~~~~~I~PG~s~t~~ 771 (1196)
-.+||++|.|++|+..+.= .+.| ....+.+.+-+ .+.++..|+||++.+..
T Consensus 31 aYtitI~N~g~~~vqLlsR~W~ITd-~~g~v~eV~G~GVVGeQP~l~PG~~y~Yt 84 (126)
T COG2967 31 AYTVTIRNLGEVPVQLLSRYWLITD-GNGRVTEVEGEGVVGEQPLLAPGEEYQYT 84 (126)
T ss_pred EEEEEEecCCCccceeeeeEEEEec-CCCcEEEEEcCceeccccccCCCCceEEc
Confidence 3699999999999977642 2233 22455666555 46778899999998875
No 144
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.69 E-value=62 Score=38.92 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=40.4
Q ss_pred ccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHH
Q 045708 216 ARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEG 261 (1196)
Q Consensus 216 GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEG 261 (1196)
-...-.+|.+|+..|+|..|..+|..+++.--...+|+|+|.++|.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4467788999999999999999999999876667788999999994
No 145
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=22.64 E-value=76 Score=28.08 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=33.5
Q ss_pred EEEECCCcceEEEeEEEEEeecceeeeeeeeEEECCCCeeEEEEEEEeCe
Q 045708 584 VELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTS 633 (1196)
Q Consensus 584 VtLqNPf~feL~I~sI~L~teGv~Fes~~~si~L~P~S~~~I~Lsg~P~~ 633 (1196)
+++.||=++=+.+.+|.+...+......... .|+|.+.+.+.+...+..
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~-mi~P~s~~~~~~~~~~~~ 49 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSG-MIAPFSSKSFPLPANSSS 49 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCET-EE-TTEEEEEETSTTSTT
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCce-EECCCCceEEeccCCCcC
Confidence 5789999999999999998766533322222 899999988887654443
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.47 E-value=9.9e+02 Score=31.70 Aligned_cols=159 Identities=13% Similarity=-0.046 Sum_probs=80.9
Q ss_pred eeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHHHHHhh-hcc--------------CCCc-hhhHHHH
Q 045708 219 QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLV-DRM--------------GQKD-AVLEEEV 282 (1196)
Q Consensus 219 ~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~~~llL-~~~--------------~~~~-~~~~~ei 282 (1196)
...+|.+++..|++.+|...+.+|+..++...+. +.+.++-.++.+.+. ... .... .......
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 4478999999999999999999999988765432 333344433211111 110 0000 0000000
Q ss_pred HH-----------HHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHH
Q 045708 283 KF-----------RYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDR 351 (1196)
Q Consensus 283 ~~-----------~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dq 351 (1196)
.. ..+.|.........+.. .. . .+..+..+-+++.+...+...++...+.++.......-...++
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--~~-~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEF--AN-N-HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--cc-c-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 00 01122222222111000 00 0 1112333445666666666666666666655432111122467
Q ss_pred HHHHHHHHHHhccCCchhhHHHHHHHHHHHH
Q 045708 352 LILYIEIARLFGTLDYQRKAAFFSRQVAQLY 382 (1196)
Q Consensus 352 i~i~~~lA~vy~~LGf~RK~AF~lR~l~~~l 382 (1196)
+..+..+|..|...|-..++.=.+++++...
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7777788888888887777777777765443
No 147
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=22.39 E-value=5.2e+02 Score=25.32 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=42.8
Q ss_pred EEecCeEEEEEEEEC----CCcceEEEeEEEEEeecceeeeeeeeEEECC----CCeeEEEEEEEeC---eeeeEEE
Q 045708 574 WVVGEPVQVLVELAN----PCGFDLRVDSIYLSVHSGNFDAFPISVELPP----NSSKVITLSGIPT---SVGPVTI 639 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqN----Pf~feL~I~sI~L~teGv~Fes~~~si~L~P----~S~~~I~Lsg~P~---~~G~L~I 639 (1196)
.-.||+.+|+|.+-+ |+..+=.|+.|.|.+.+.. ...+.+.| +....+++.+... ..|.|..
T Consensus 18 ~k~ge~~~V~V~vG~~v~HPM~~~HyI~wI~l~~~~~~----v~r~~l~p~~~~~~~P~a~F~l~~~~~~~~~~l~a 90 (104)
T cd03172 18 VKAGEPFEVTVSVGKEIPHPNTTEHHIEWIELYFGVYL----LGRVEFTAHGGVYTKPEATFTVKIPKKGKKGKLVA 90 (104)
T ss_pred ccCCCcEEEEEEECCcccCCCCCCeEEEEEEEEECCEE----EEEEEEeCCCCCCCCCeEEEEEEccccCCcceEEE
Confidence 457999999999666 9999999999999887532 23455555 4445566665544 4455544
No 148
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=21.05 E-value=2.3e+02 Score=27.89 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=39.3
Q ss_pred CceEEEeCCCCcEEEEeeCCCcceEEecccE-EEEEEEEEeccccccceEEEEEecCCCcceEEEeccccccccCCCCCC
Q 045708 688 VPNISVVPPLPLLVSNVVGGDGAIILYEGEI-RDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGA 766 (1196)
Q Consensus 688 ~l~i~VIp~qP~L~i~~ts~~~~vmLleGE~-~~f~ItL~N~S~~pV~~l~~sf~d~~~~~i~~~e~e~~~~~~~I~PG~ 766 (1196)
.++++|++.--.|-... -+|.. -.++++|.|.+..|.. +.+++.+.....+. .-...+.|+||+
T Consensus 10 ~~~~~V~rdr~~ly~~~---------~dg~I~N~Y~lkl~Nkt~~~~~-~~i~~~g~~~~~l~-----~~~~~i~v~~g~ 74 (118)
T PF11614_consen 10 PVELNVLRDRGPLYREL---------SDGSIRNQYTLKLTNKTNQPRT-YTISVEGLPGAELQ-----GPENTITVPPGE 74 (118)
T ss_dssp SEEEEEEE-SS------------------SEEEEEEEEEEE-SSS-EE-EEEEEES-SS-EE------ES--EEEE-TT-
T ss_pred cEEEEEEecCCCcEEEc---------CCCeEEEEEEEEEEECCCCCEE-EEEEEecCCCeEEE-----CCCcceEECCCC
Confidence 35566665544443322 24444 5689999999999885 56677653322221 122456899999
Q ss_pred EEEEEEEEEE
Q 045708 767 EVIIPVTLKA 776 (1196)
Q Consensus 767 s~t~~i~v~g 776 (1196)
+..+++.|..
T Consensus 75 ~~~~~v~v~~ 84 (118)
T PF11614_consen 75 TREVPVFVTA 84 (118)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 9999999999
No 149
>PF13595 DUF4138: Domain of unknown function (DUF4138)
Probab=20.97 E-value=1.7e+02 Score=33.19 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=54.4
Q ss_pred eEEEeeecCCCCceEEEEEEEeecCCCCCCCCCCCCC---CCccCc-cceeeCCCCceEEEEeecccccCCCCCCceeec
Q 045708 900 RFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHD---ATEYGY-PKTRIDRDYSARVLIPLEHFKLPILDGSFFVKD 975 (1196)
Q Consensus 900 ~~l~l~l~N~~~~~f~v~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~~~~~~rvl~p~~~~~lp~~~~~~~~~~ 975 (1196)
-+|-+++.|-+.++|+|+.-.---.....-.-.|.|+ .|-+.| ..++|..+.+.|.+.=+++|.||.- +.++..
T Consensus 144 lyf~~~i~N~S~i~ydID~irf~i~DkK~~Krta~Qe~el~Pv~~~n~~~~I~~k~~~r~V~vl~KFT~pd~--K~L~Ie 221 (246)
T PF13595_consen 144 LYFHLSIKNKSNIPYDIDFIRFKIVDKKKAKRTAVQEIELEPVYSYNDPTKIKGKSSYRNVFVLPKFTIPDD--KVLEIE 221 (246)
T ss_pred EEEEEEEEcCCCCCeEEeEEEEEEEecchhhccccceEEEeEeEecCCcceecCCceEEEEEEEeeeecCCC--CEEEEE
Confidence 3589999999999999986543111111111222333 344555 5567999999999999999999982 222111
Q ss_pred ccCCCCCCCCcccccc
Q 045708 976 MQSNGTSGSRSSSFSE 991 (1196)
Q Consensus 976 ~~~~~~~~~r~~~~~~ 991 (1196)
=.|-.|||.-.|..
T Consensus 222 --l~EknGgR~~~l~I 235 (246)
T PF13595_consen 222 --LYEKNGGRHITLKI 235 (246)
T ss_pred --EEEcCCCceEEEEE
Confidence 11223677766633
No 150
>PF13595 DUF4138: Domain of unknown function (DUF4138)
Probab=20.97 E-value=3.9e+02 Score=30.33 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=26.9
Q ss_pred EEecccEEEEEEEEEeccc--cccceEEEEEecC
Q 045708 712 ILYEGEIRDVWISLANAGT--VPVEQAHISLSGK 743 (1196)
Q Consensus 712 mLleGE~~~f~ItL~N~S~--~pV~~l~~sf~d~ 743 (1196)
....|...-|.+.|+|.|. ..||+++|.+.|+
T Consensus 137 Iy~~~d~lyf~~~i~N~S~i~ydID~irf~i~Dk 170 (246)
T PF13595_consen 137 IYVHGDYLYFHLSIKNKSNIPYDIDFIRFKIVDK 170 (246)
T ss_pred EEEECCEEEEEEEEEcCCCCCeEEeEEEEEEEec
Confidence 3456778889999999996 5599999999996
No 151
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=20.95 E-value=3.4e+02 Score=25.81 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=38.1
Q ss_pred cCeEEEEEEEECCCcceEEEeEEEEEeecceeeeeeeeEEECCCCeeEEEEEEEeC
Q 045708 577 GEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPT 632 (1196)
Q Consensus 577 gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes~~~si~L~P~S~~~I~Lsg~P~ 632 (1196)
+......++|+|+-...|-. .|. .+..-.|...|..-+|.|+++..|.++..|.
T Consensus 17 ~~~~~~~l~l~N~s~~~i~f-Kik-tt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIAF-KIK-TTNPNRYRVKPSYGIIEPGESVEITITFQPF 70 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEEE-EEE-ES-TTTEEEESSEEEE-TTEEEEEEEEE-SS
T ss_pred CceEEEEEEEECCCCCcEEE-EEE-cCCCceEEecCCCEEECCCCEEEEEEEEEec
Confidence 34478889999999987755 333 2233458788999999999999999999884
No 152
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=20.31 E-value=7.3e+02 Score=32.70 Aligned_cols=86 Identities=13% Similarity=0.024 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCC--CCCC------CCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 045708 285 RYNSVILHYRKSFI--PDNA------QRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYI 356 (1196)
Q Consensus 285 ~~~~ai~lY~ks~~--p~n~------e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~ 356 (1196)
++++|+..|.+... |... ...|. .-..++.+..+.++...+...++.+.+.++..... +...++.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P------~n~~l~~ 397 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP------GNQGLRI 397 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHH
Confidence 47888888876542 2110 00111 01235667788888888888888888887654311 1245777
Q ss_pred HHHHHhccCCchhhHHHHHHH
Q 045708 357 EIARLFGTLDYQRKAAFFSRQ 377 (1196)
Q Consensus 357 ~lA~vy~~LGf~RK~AF~lR~ 377 (1196)
.+|.+|...|-.+++-=.++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 778877777776655555444
No 153
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.05 E-value=79 Score=32.31 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.1
Q ss_pred cceeeehhHhhhcCChHHHHHHHHHHHHHh
Q 045708 217 RAQKTIGDYCLLAGSPVDANAHYSTALELA 246 (1196)
Q Consensus 217 R~~KvlGDl~LLaG~~~DAL~~Y~eAi~~l 246 (1196)
+....+|..+...|+|.+|+..|..|+.+-
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445678999999999999999999999743
No 154
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=20.03 E-value=1.7e+02 Score=27.42 Aligned_cols=66 Identities=29% Similarity=0.362 Sum_probs=39.9
Q ss_pred EEecCeEEEEEEEECCCcceEEE--eEEEEEeecceeeee--eeeEEECCCCeeEEEEEEEeCeeeeEEE
Q 045708 574 WVVGEPVQVLVELANPCGFDLRV--DSIYLSVHSGNFDAF--PISVELPPNSSKVITLSGIPTSVGPVTI 639 (1196)
Q Consensus 574 ~V~gE~~ev~VtLqNPf~feL~I--~sI~L~teGv~Fes~--~~si~L~P~S~~~I~Lsg~P~~~G~L~I 639 (1196)
.++|++++|.|...+-..-.+.. +.+.+...+..=... ...+.+-.+..-+..++.+|+..|..+|
T Consensus 17 ~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i 86 (101)
T PF00630_consen 17 AVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKI 86 (101)
T ss_dssp EETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEE
T ss_pred eECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEE
Confidence 48899999999999887766554 222222222211100 2333344444447888889999999665
Done!