Query 045709
Match_columns 337
No_of_seqs 373 out of 2243
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-43 4E-48 350.3 28.3 318 11-337 5-351 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.6E-31 1E-35 235.6 14.6 186 149-336 1-190 (287)
3 PLN03210 Resistant to P. syrin 99.9 5.6E-24 1.2E-28 221.1 24.0 184 144-337 184-384 (1153)
4 PRK00411 cdc6 cell division co 99.5 2.8E-12 6.1E-17 119.6 18.3 173 142-316 28-220 (394)
5 TIGR02928 orc1/cdc6 family rep 99.4 8.6E-11 1.9E-15 108.5 19.6 173 143-317 14-213 (365)
6 PF05729 NACHT: NACHT domain 99.3 1.1E-11 2.3E-16 101.1 11.7 141 166-316 1-163 (166)
7 PF01637 Arch_ATPase: Archaeal 99.2 3.5E-11 7.6E-16 103.7 9.0 167 146-318 1-206 (234)
8 TIGR03015 pepcterm_ATPase puta 99.2 2E-09 4.4E-14 95.1 20.2 146 163-317 41-206 (269)
9 PRK06893 DNA replication initi 99.1 6.9E-10 1.5E-14 95.5 10.0 130 164-324 38-182 (229)
10 COG2256 MGS1 ATPase related to 99.1 7.4E-10 1.6E-14 98.9 10.0 140 146-316 26-176 (436)
11 COG1474 CDC6 Cdc6-related prot 99.1 2.2E-08 4.8E-13 91.5 19.7 169 143-316 16-203 (366)
12 PF13173 AAA_14: AAA domain 99.0 8.6E-10 1.9E-14 86.0 7.2 120 165-308 2-127 (128)
13 PTZ00112 origin recognition co 99.0 8E-09 1.7E-13 101.1 14.4 187 143-334 754-968 (1164)
14 TIGR00635 ruvB Holliday juncti 98.9 7.2E-09 1.6E-13 93.3 11.2 162 144-320 4-176 (305)
15 PRK04841 transcriptional regul 98.9 2.4E-08 5.2E-13 103.0 16.0 167 141-318 11-201 (903)
16 cd00009 AAA The AAA+ (ATPases 98.9 1.2E-08 2.7E-13 80.8 10.9 123 147-287 1-131 (151)
17 KOG2028 ATPase related to the 98.9 2E-08 4.3E-13 88.6 12.8 135 156-316 153-294 (554)
18 TIGR03420 DnaA_homol_Hda DnaA 98.9 5.4E-09 1.2E-13 89.9 8.6 138 149-317 22-173 (226)
19 PF13401 AAA_22: AAA domain; P 98.9 5.6E-09 1.2E-13 81.6 7.5 117 164-285 3-125 (131)
20 PRK00080 ruvB Holliday junctio 98.9 2E-08 4.3E-13 91.3 11.2 162 144-320 25-197 (328)
21 PRK13342 recombination factor 98.8 2.2E-08 4.8E-13 93.8 10.7 143 144-317 12-165 (413)
22 PF13191 AAA_16: AAA ATPase do 98.8 1.2E-08 2.7E-13 84.6 8.2 44 146-189 2-48 (185)
23 PRK08727 hypothetical protein; 98.8 5.1E-08 1.1E-12 84.1 11.3 144 145-319 20-178 (233)
24 PRK12402 replication factor C 98.8 5.8E-08 1.3E-12 88.6 12.0 169 144-319 15-200 (337)
25 PTZ00202 tuzin; Provisional 98.8 2E-07 4.3E-12 85.2 14.7 163 139-316 257-434 (550)
26 PRK07003 DNA polymerase III su 98.8 1.4E-07 3E-12 91.9 14.2 168 144-320 16-195 (830)
27 PRK08084 DNA replication initi 98.8 1E-07 2.2E-12 82.4 11.5 144 146-319 25-183 (235)
28 TIGR01242 26Sp45 26S proteasom 98.8 1.6E-07 3.5E-12 86.6 13.4 164 144-332 122-322 (364)
29 TIGR02903 spore_lon_C ATP-depe 98.7 3.1E-07 6.8E-12 89.9 15.7 172 144-318 154-368 (615)
30 cd01128 rho_factor Transcripti 98.7 3.5E-08 7.7E-13 85.4 7.5 93 163-259 14-115 (249)
31 PLN03025 replication factor C 98.7 1.7E-07 3.6E-12 84.9 10.9 158 144-320 13-175 (319)
32 PRK00440 rfc replication facto 98.7 4.1E-07 8.8E-12 82.4 13.3 156 144-320 17-178 (319)
33 PRK14963 DNA polymerase III su 98.7 4.1E-07 8.9E-12 86.7 13.6 166 144-320 14-192 (504)
34 PRK13341 recombination factor 98.6 1.6E-07 3.5E-12 92.9 10.7 143 144-317 28-182 (725)
35 PRK14961 DNA polymerase III su 98.6 7.7E-07 1.7E-11 82.0 14.6 164 144-317 16-192 (363)
36 PRK14949 DNA polymerase III su 98.6 3.4E-07 7.4E-12 90.8 12.8 164 144-318 16-193 (944)
37 PRK04195 replication factor C 98.6 3E-07 6.6E-12 87.9 12.0 151 144-320 14-177 (482)
38 TIGR02881 spore_V_K stage V sp 98.6 5.4E-07 1.2E-11 79.2 12.2 156 145-320 7-195 (261)
39 PRK14960 DNA polymerase III su 98.6 9.6E-07 2.1E-11 85.2 13.4 167 144-320 15-194 (702)
40 PRK12323 DNA polymerase III su 98.6 8.2E-07 1.8E-11 85.5 12.7 171 144-319 16-199 (700)
41 PRK14957 DNA polymerase III su 98.6 1.1E-06 2.3E-11 84.2 13.4 153 144-317 16-192 (546)
42 PRK14962 DNA polymerase III su 98.6 1E-06 2.2E-11 83.3 13.0 165 144-318 14-191 (472)
43 PRK09376 rho transcription ter 98.6 3.1E-07 6.8E-12 83.3 8.9 92 163-258 167-267 (416)
44 PRK05642 DNA replication initi 98.5 6.5E-07 1.4E-11 77.2 10.4 124 165-319 45-182 (234)
45 PRK03992 proteasome-activating 98.5 2.9E-06 6.3E-11 78.8 15.0 165 144-333 131-332 (389)
46 TIGR03345 VI_ClpV1 type VI sec 98.5 9.4E-07 2E-11 89.5 12.5 155 144-316 187-363 (852)
47 COG2909 MalT ATP-dependent tra 98.5 3E-06 6.4E-11 82.8 15.1 171 140-318 15-209 (894)
48 TIGR02397 dnaX_nterm DNA polym 98.5 3.1E-06 6.8E-11 77.9 14.3 154 144-318 14-191 (355)
49 PRK06645 DNA polymerase III su 98.5 3.8E-06 8.2E-11 80.0 14.9 171 144-320 21-204 (507)
50 PRK05564 DNA polymerase III su 98.5 2.2E-06 4.7E-11 77.5 12.8 152 145-316 5-165 (313)
51 PRK14951 DNA polymerase III su 98.5 2.2E-06 4.7E-11 83.3 13.4 171 144-320 16-200 (618)
52 PRK09087 hypothetical protein; 98.5 9.2E-07 2E-11 75.8 9.7 117 164-320 43-170 (226)
53 PF00308 Bac_DnaA: Bacterial d 98.5 5.9E-07 1.3E-11 76.6 8.5 140 165-324 34-187 (219)
54 TIGR00767 rho transcription te 98.5 8.7E-07 1.9E-11 80.8 9.8 94 163-258 166-266 (415)
55 PRK14956 DNA polymerase III su 98.5 1.5E-06 3.1E-11 81.4 11.4 166 144-319 18-196 (484)
56 CHL00181 cbbX CbbX; Provisiona 98.5 3.8E-06 8.3E-11 74.6 13.6 135 165-319 59-212 (287)
57 PF05496 RuvB_N: Holliday junc 98.5 1.3E-06 2.8E-11 73.3 9.9 144 144-319 24-195 (233)
58 TIGR02880 cbbX_cfxQ probable R 98.5 2.1E-06 4.6E-11 76.2 12.0 132 167-318 60-210 (284)
59 TIGR02639 ClpA ATP-dependent C 98.5 1E-06 2.2E-11 88.4 11.1 155 144-316 182-358 (731)
60 KOG2227 Pre-initiation complex 98.5 1.4E-05 3.1E-10 73.2 17.1 187 143-334 149-358 (529)
61 PRK14958 DNA polymerase III su 98.4 2.8E-06 6E-11 81.3 12.9 154 144-318 16-193 (509)
62 COG0488 Uup ATPase components 98.4 7.5E-06 1.6E-10 78.3 15.3 135 164-302 347-511 (530)
63 PRK14964 DNA polymerase III su 98.4 3.7E-06 8.1E-11 79.5 13.0 167 144-320 13-192 (491)
64 PRK08691 DNA polymerase III su 98.4 3.8E-06 8.1E-11 81.8 13.2 168 144-320 16-195 (709)
65 PRK11331 5-methylcytosine-spec 98.4 3E-06 6.6E-11 78.5 12.0 107 144-258 175-283 (459)
66 PRK14970 DNA polymerase III su 98.4 6.2E-06 1.3E-10 76.3 13.9 157 144-320 17-184 (367)
67 PRK14969 DNA polymerase III su 98.4 5E-06 1.1E-10 80.0 13.6 164 144-317 16-192 (527)
68 PRK07940 DNA polymerase III su 98.4 6.1E-06 1.3E-10 76.4 13.6 161 144-315 5-188 (394)
69 PTZ00454 26S protease regulato 98.4 9.1E-06 2E-10 75.4 14.7 165 144-332 145-345 (398)
70 PRK07994 DNA polymerase III su 98.4 2.4E-06 5.2E-11 83.2 11.2 163 144-316 16-191 (647)
71 PRK14955 DNA polymerase III su 98.4 1.9E-06 4E-11 80.4 10.1 170 144-316 16-199 (397)
72 PRK07764 DNA polymerase III su 98.4 5.1E-06 1.1E-10 83.5 13.6 164 144-317 15-193 (824)
73 PRK12422 chromosomal replicati 98.4 1.9E-06 4.1E-11 81.1 10.0 139 165-325 141-293 (445)
74 KOG2543 Origin recognition com 98.4 9.2E-06 2E-10 72.6 13.6 167 143-316 5-193 (438)
75 PHA02544 44 clamp loader, smal 98.4 3.4E-06 7.3E-11 76.4 11.2 144 144-313 21-170 (316)
76 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.4E-10 67.2 13.4 136 155-315 3-167 (188)
77 PRK14959 DNA polymerase III su 98.4 6E-06 1.3E-10 79.8 12.9 166 144-319 16-194 (624)
78 PRK14952 DNA polymerase III su 98.4 5.7E-06 1.2E-10 80.0 12.7 165 144-318 13-192 (584)
79 PRK05896 DNA polymerase III su 98.4 5.8E-06 1.3E-10 79.5 12.5 165 144-318 16-193 (605)
80 PRK14088 dnaA chromosomal repl 98.4 3.3E-06 7.1E-11 79.6 10.7 136 165-319 130-279 (440)
81 CHL00095 clpC Clp protease ATP 98.3 4.2E-06 9.1E-11 85.0 11.9 155 144-315 179-353 (821)
82 PRK09112 DNA polymerase III su 98.3 6.4E-06 1.4E-10 75.1 11.3 168 144-316 23-213 (351)
83 PRK08903 DnaA regulatory inact 98.3 4.4E-06 9.5E-11 71.9 9.8 138 145-316 19-170 (227)
84 PRK09111 DNA polymerase III su 98.3 9.2E-06 2E-10 79.0 13.0 169 144-319 24-207 (598)
85 PRK07471 DNA polymerase III su 98.3 2.2E-05 4.7E-10 72.1 14.8 170 144-316 19-213 (365)
86 PF05621 TniB: Bacterial TniB 98.3 1.2E-05 2.6E-10 70.5 12.3 114 144-259 34-157 (302)
87 PRK10865 protein disaggregatio 98.3 1.1E-05 2.4E-10 82.1 13.6 155 144-316 178-354 (857)
88 KOG0989 Replication factor C, 98.3 4.9E-06 1.1E-10 72.2 9.4 168 143-325 35-210 (346)
89 TIGR03689 pup_AAA proteasome A 98.3 8.1E-06 1.8E-10 77.5 11.7 161 144-318 182-380 (512)
90 TIGR03346 chaperone_ClpB ATP-d 98.3 8.7E-06 1.9E-10 83.0 12.6 155 144-316 173-349 (852)
91 PTZ00361 26 proteosome regulat 98.3 1.3E-05 2.8E-10 75.0 12.7 164 145-332 184-383 (438)
92 PRK14087 dnaA chromosomal repl 98.3 3.9E-06 8.5E-11 79.2 9.0 136 165-318 141-290 (450)
93 TIGR00362 DnaA chromosomal rep 98.3 7.8E-06 1.7E-10 76.6 11.0 136 165-320 136-285 (405)
94 PRK14954 DNA polymerase III su 98.2 2E-05 4.4E-10 76.8 13.8 171 144-317 16-200 (620)
95 PRK11034 clpA ATP-dependent Cl 98.2 8E-06 1.7E-10 81.5 11.2 156 144-316 186-362 (758)
96 PRK14971 DNA polymerase III su 98.2 2E-05 4.4E-10 77.1 13.8 155 144-319 17-196 (614)
97 PRK00149 dnaA chromosomal repl 98.2 7.3E-06 1.6E-10 77.8 10.3 135 165-319 148-296 (450)
98 smart00382 AAA ATPases associa 98.2 6E-06 1.3E-10 64.6 8.3 91 165-262 2-93 (148)
99 TIGR01241 FtsH_fam ATP-depende 98.2 6.2E-05 1.4E-09 72.4 16.7 165 144-332 55-254 (495)
100 PRK14950 DNA polymerase III su 98.2 4.5E-05 9.8E-10 74.7 14.2 167 144-319 16-195 (585)
101 PRK06305 DNA polymerase III su 98.2 5.9E-05 1.3E-09 71.3 14.5 165 144-317 17-194 (451)
102 PRK14953 DNA polymerase III su 98.2 5.8E-05 1.3E-09 71.9 14.5 163 144-318 16-193 (486)
103 COG1222 RPT1 ATP-dependent 26S 98.1 0.00012 2.5E-09 65.3 14.8 161 146-332 153-351 (406)
104 PRK14086 dnaA chromosomal repl 98.1 1.5E-05 3.2E-10 76.9 10.1 137 166-322 315-465 (617)
105 PF00004 AAA: ATPase family as 98.1 1.3E-05 2.7E-10 62.4 8.1 22 168-189 1-22 (132)
106 PRK06620 hypothetical protein; 98.1 6E-06 1.3E-10 70.2 6.2 109 166-318 45-162 (214)
107 CHL00176 ftsH cell division pr 98.1 7.8E-05 1.7E-09 73.2 14.4 151 144-318 183-368 (638)
108 PRK08451 DNA polymerase III su 98.1 9.9E-05 2.1E-09 70.6 14.5 167 144-319 14-192 (535)
109 PRK14948 DNA polymerase III su 98.1 8.6E-05 1.9E-09 72.8 14.5 167 144-318 16-195 (620)
110 COG2255 RuvB Holliday junction 98.1 4.6E-05 9.9E-10 65.7 10.7 143 144-318 26-196 (332)
111 PRK07133 DNA polymerase III su 98.0 9.1E-05 2E-09 73.0 13.8 159 144-317 18-191 (725)
112 COG0542 clpA ATP-binding subun 98.0 0.00025 5.5E-09 70.0 16.8 104 144-259 491-605 (786)
113 PRK10865 protein disaggregatio 98.0 0.0015 3.3E-08 66.8 23.0 46 144-189 568-622 (857)
114 COG0593 DnaA ATPase involved i 98.0 2.4E-05 5.1E-10 71.9 9.0 140 164-326 112-267 (408)
115 KOG0733 Nuclear AAA ATPase (VC 98.0 0.00011 2.3E-09 69.7 13.3 165 145-332 191-390 (802)
116 PRK08181 transposase; Validate 98.0 0.00018 3.9E-09 63.2 14.0 105 158-286 101-209 (269)
117 PRK14965 DNA polymerase III su 98.0 7.3E-05 1.6E-09 72.9 12.5 164 144-317 16-192 (576)
118 TIGR00763 lon ATP-dependent pr 98.0 0.0001 2.2E-09 74.7 13.8 157 144-316 320-505 (775)
119 PRK08116 hypothetical protein; 98.0 1E-05 2.2E-10 71.2 5.8 102 166-286 115-221 (268)
120 PF04665 Pox_A32: Poxvirus A32 98.0 2.2E-05 4.8E-10 67.2 7.3 37 165-204 13-49 (241)
121 COG3899 Predicted ATPase [Gene 98.0 7.2E-05 1.6E-09 76.1 12.0 45 146-190 2-49 (849)
122 PRK06647 DNA polymerase III su 98.0 0.0002 4.4E-09 69.4 14.6 165 144-318 16-193 (563)
123 PRK10536 hypothetical protein; 98.0 6.9E-05 1.5E-09 64.6 9.7 54 145-201 56-109 (262)
124 TIGR02639 ClpA ATP-dependent C 97.9 0.00011 2.3E-09 74.1 12.6 46 144-189 454-508 (731)
125 COG1373 Predicted ATPase (AAA+ 97.9 9.4E-05 2E-09 68.9 11.3 133 149-310 22-161 (398)
126 PF13177 DNA_pol3_delta2: DNA 97.9 0.00012 2.5E-09 59.4 10.5 135 148-304 1-162 (162)
127 PRK05563 DNA polymerase III su 97.9 0.00032 6.9E-09 68.2 15.1 165 144-318 16-193 (559)
128 PRK08118 topology modulation p 97.9 3.1E-05 6.6E-10 63.2 7.0 36 166-201 2-37 (167)
129 COG0466 Lon ATP-dependent Lon 97.9 0.00035 7.6E-09 67.6 14.1 156 144-317 323-509 (782)
130 PRK06835 DNA replication prote 97.9 0.0014 3E-08 59.4 17.0 38 164-204 182-219 (329)
131 TIGR01243 CDC48 AAA family ATP 97.9 0.00016 3.5E-09 72.9 12.1 149 145-317 179-360 (733)
132 KOG0741 AAA+-type ATPase [Post 97.8 0.00064 1.4E-08 63.5 14.6 126 164-316 537-686 (744)
133 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00026 5.6E-09 67.4 12.5 165 144-332 228-423 (489)
134 PRK10787 DNA-binding ATP-depen 97.8 0.00024 5.2E-09 71.6 12.9 159 143-317 321-507 (784)
135 TIGR01243 CDC48 AAA family ATP 97.8 0.00038 8.2E-09 70.3 14.3 165 145-333 454-652 (733)
136 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0003 6.5E-09 72.0 13.5 47 143-189 564-619 (852)
137 PF14516 AAA_35: AAA-like doma 97.8 0.0016 3.4E-08 59.3 16.9 169 143-316 10-214 (331)
138 PRK12608 transcription termina 97.8 0.00021 4.5E-09 65.0 10.9 104 153-258 120-231 (380)
139 KOG1514 Origin recognition com 97.8 0.00073 1.6E-08 65.2 14.8 170 143-319 395-592 (767)
140 PRK07399 DNA polymerase III su 97.8 0.00055 1.2E-08 61.6 13.3 170 145-317 5-196 (314)
141 PRK08058 DNA polymerase III su 97.8 0.00039 8.5E-09 63.2 12.4 161 145-315 6-181 (329)
142 PF05673 DUF815: Protein of un 97.8 0.00031 6.8E-09 59.9 10.8 47 143-189 26-76 (249)
143 cd03214 ABC_Iron-Siderophores_ 97.8 0.00014 2.9E-09 60.2 8.5 123 163-290 23-162 (180)
144 PRK09361 radB DNA repair and r 97.8 0.00015 3.2E-09 62.3 8.9 89 164-257 22-117 (225)
145 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 0.00011 2.5E-09 63.1 8.0 125 163-290 28-203 (254)
146 PRK12727 flagellar biosynthesi 97.8 0.0015 3.3E-08 62.0 16.1 26 164-189 349-374 (559)
147 TIGR00602 rad24 checkpoint pro 97.8 9.1E-05 2E-09 72.3 8.2 46 144-189 84-134 (637)
148 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00093 2E-08 58.7 13.8 54 152-213 10-63 (262)
149 PF00448 SRP54: SRP54-type pro 97.7 0.00016 3.4E-09 60.6 8.4 89 165-256 1-92 (196)
150 KOG0730 AAA+-type ATPase [Post 97.7 0.00052 1.1E-08 65.7 12.6 147 163-333 466-632 (693)
151 cd03247 ABCC_cytochrome_bd The 97.7 0.00021 4.7E-09 58.9 9.0 128 163-300 26-169 (178)
152 cd01393 recA_like RecA is a b 97.7 0.00052 1.1E-08 58.9 11.7 91 164-258 18-125 (226)
153 PRK07261 topology modulation p 97.7 0.0002 4.2E-09 58.7 8.4 23 167-189 2-24 (171)
154 TIGR02237 recomb_radB DNA repa 97.7 0.00025 5.5E-09 60.0 9.3 90 164-258 11-108 (209)
155 COG2884 FtsE Predicted ATPase 97.7 0.00035 7.6E-09 56.9 9.4 126 163-293 26-204 (223)
156 KOG2228 Origin recognition com 97.7 0.0012 2.6E-08 58.5 13.2 173 144-320 24-223 (408)
157 PRK06526 transposase; Provisio 97.7 5.2E-05 1.1E-09 66.1 4.8 26 164-189 97-122 (254)
158 cd01394 radB RadB. The archaea 97.7 0.00059 1.3E-08 58.2 11.1 90 164-258 18-114 (218)
159 cd03238 ABC_UvrA The excision 97.7 0.00026 5.7E-09 58.1 8.4 125 163-300 19-161 (176)
160 PRK11034 clpA ATP-dependent Cl 97.7 0.00029 6.3E-09 70.5 10.2 46 144-189 458-512 (758)
161 PF02562 PhoH: PhoH-like prote 97.7 0.00013 2.9E-09 61.0 6.6 130 148-287 4-157 (205)
162 TIGR02012 tigrfam_recA protein 97.7 0.00019 4.1E-09 64.4 8.0 87 164-258 54-144 (321)
163 cd00983 recA RecA is a bacter 97.7 0.00018 3.8E-09 64.6 7.8 87 164-258 54-144 (325)
164 PRK09183 transposase/IS protei 97.6 0.00011 2.5E-09 64.3 6.5 26 164-189 101-126 (259)
165 KOG0991 Replication factor C, 97.6 0.00019 4.1E-09 60.2 7.3 46 144-189 27-72 (333)
166 KOG0927 Predicted transporter 97.6 0.0023 5E-08 60.1 15.0 242 9-288 280-568 (614)
167 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00046 1E-08 59.5 9.9 93 164-258 18-126 (235)
168 PRK04296 thymidine kinase; Pro 97.6 6.6E-05 1.4E-09 62.6 4.3 113 166-287 3-117 (190)
169 KOG2004 Mitochondrial ATP-depe 97.6 0.0011 2.5E-08 64.0 12.9 159 144-317 411-597 (906)
170 CHL00095 clpC Clp protease ATP 97.6 0.00034 7.4E-09 71.3 10.0 47 143-189 508-563 (821)
171 PRK12377 putative replication 97.6 0.00054 1.2E-08 59.4 9.9 75 164-258 100-174 (248)
172 PRK09354 recA recombinase A; P 97.6 0.00027 5.9E-09 64.0 8.3 87 164-258 59-149 (349)
173 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00034 7.3E-09 57.0 8.2 127 163-300 25-160 (166)
174 COG1120 FepC ABC-type cobalami 97.6 0.00032 7E-09 60.6 8.2 129 163-293 26-206 (258)
175 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00028 6.1E-09 71.8 9.1 47 143-189 565-620 (852)
176 PF10443 RNA12: RNA12 protein; 97.6 0.0013 2.8E-08 60.5 12.4 161 149-319 1-232 (431)
177 PF08423 Rad51: Rad51; InterP 97.6 0.00043 9.3E-09 60.5 9.1 94 164-258 37-144 (256)
178 COG3903 Predicted ATPase [Gene 97.6 1.8E-05 3.8E-10 71.7 0.4 141 164-317 13-156 (414)
179 cd01131 PilT Pilus retraction 97.6 9.2E-05 2E-09 62.2 4.5 111 166-290 2-113 (198)
180 PF13207 AAA_17: AAA domain; P 97.6 7.7E-05 1.7E-09 57.2 3.7 23 167-189 1-23 (121)
181 TIGR02238 recomb_DMC1 meiotic 97.6 0.00075 1.6E-08 60.7 10.4 94 164-258 95-202 (313)
182 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00028 6E-09 57.9 7.1 121 163-291 24-160 (173)
183 COG0470 HolB ATPase involved i 97.5 0.00067 1.5E-08 61.4 10.4 44 146-189 3-48 (325)
184 COG1484 DnaC DNA replication p 97.5 0.00059 1.3E-08 59.5 9.2 75 164-258 104-178 (254)
185 PRK10733 hflB ATP-dependent me 97.5 0.00084 1.8E-08 66.5 11.2 143 166-332 186-351 (644)
186 smart00763 AAA_PrkA PrkA AAA d 97.5 0.0002 4.2E-09 64.9 6.2 45 145-189 52-102 (361)
187 PRK06921 hypothetical protein; 97.5 0.00027 5.8E-09 62.1 6.8 39 164-204 116-154 (266)
188 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0024 5.2E-08 60.8 13.2 146 164-333 544-711 (802)
189 PRK08939 primosomal protein Dn 97.5 0.03 6.5E-07 50.3 19.9 116 148-285 135-260 (306)
190 cd03228 ABCC_MRP_Like The MRP 97.5 0.00049 1.1E-08 56.3 7.7 127 163-300 26-167 (171)
191 KOG0744 AAA+-type ATPase [Post 97.5 0.0003 6.4E-09 61.8 6.5 132 165-316 177-340 (423)
192 PRK05707 DNA polymerase III su 97.5 0.0017 3.6E-08 58.9 11.6 142 165-316 22-178 (328)
193 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00077 1.7E-08 53.5 8.4 105 163-291 24-132 (144)
194 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00029 6.3E-09 57.9 6.0 108 163-290 23-136 (177)
195 cd03216 ABC_Carb_Monos_I This 97.5 0.00027 5.8E-09 57.4 5.8 116 163-290 24-146 (163)
196 PLN03187 meiotic recombination 97.4 0.002 4.3E-08 58.6 11.7 94 164-258 125-232 (344)
197 COG0488 Uup ATPase components 97.4 0.00069 1.5E-08 65.1 9.0 68 230-301 153-224 (530)
198 cd03229 ABC_Class3 This class 97.4 0.00034 7.3E-09 57.7 6.1 131 163-300 24-174 (178)
199 PF07693 KAP_NTPase: KAP famil 97.4 0.0044 9.6E-08 56.2 14.1 40 150-189 2-44 (325)
200 KOG1969 DNA replication checkp 97.4 0.00046 1E-08 66.8 7.7 73 164-259 325-399 (877)
201 COG2812 DnaX DNA polymerase II 97.4 0.001 2.2E-08 63.2 9.9 171 144-323 16-198 (515)
202 COG4608 AppF ABC-type oligopep 97.4 0.00081 1.7E-08 58.1 8.3 125 163-293 37-177 (268)
203 COG1136 SalX ABC-type antimicr 97.4 0.0011 2.4E-08 56.1 9.0 131 163-301 29-216 (226)
204 PRK05541 adenylylsulfate kinas 97.4 0.00045 9.8E-09 56.8 6.6 36 164-202 6-41 (176)
205 cd03246 ABCC_Protease_Secretio 97.4 0.00059 1.3E-08 56.0 7.2 127 163-300 26-168 (173)
206 cd01120 RecA-like_NTPases RecA 97.4 0.0016 3.5E-08 52.3 9.7 39 167-208 1-39 (165)
207 COG1131 CcmA ABC-type multidru 97.4 0.0022 4.7E-08 57.3 11.1 126 164-292 30-203 (293)
208 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0017 3.8E-08 56.1 10.3 89 164-258 20-137 (237)
209 KOG0734 AAA+-type ATPase conta 97.4 0.0027 5.8E-08 59.6 11.8 45 145-189 305-361 (752)
210 PRK06067 flagellar accessory p 97.4 0.002 4.3E-08 55.6 10.4 88 164-257 24-130 (234)
211 TIGR02858 spore_III_AA stage I 97.4 0.0019 4.1E-08 56.8 10.2 128 154-290 99-233 (270)
212 PRK07952 DNA replication prote 97.4 0.0019 4.2E-08 55.8 10.1 76 165-259 99-174 (244)
213 PRK13539 cytochrome c biogenes 97.3 0.00097 2.1E-08 56.4 8.2 137 163-303 26-201 (207)
214 TIGR02239 recomb_RAD51 DNA rep 97.3 0.0018 3.9E-08 58.4 10.2 94 164-258 95-202 (316)
215 cd01121 Sms Sms (bacterial rad 97.3 0.0014 3.1E-08 60.3 9.7 86 164-258 81-169 (372)
216 COG0464 SpoVK ATPases of the A 97.3 0.0013 2.7E-08 63.5 9.7 146 164-332 275-441 (494)
217 TIGR03522 GldA_ABC_ATP gliding 97.3 0.0018 3.9E-08 58.1 10.0 27 163-189 26-52 (301)
218 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0013 2.7E-08 52.9 8.0 117 166-287 3-139 (159)
219 PRK13543 cytochrome c biogenes 97.3 0.0016 3.6E-08 55.3 9.3 27 163-189 35-61 (214)
220 cd03237 ABC_RNaseL_inhibitor_d 97.3 0.0016 3.4E-08 56.7 9.1 127 164-291 24-181 (246)
221 PRK00771 signal recognition pa 97.3 0.0028 6E-08 59.6 11.3 89 164-256 94-184 (437)
222 PLN00020 ribulose bisphosphate 97.3 0.0013 2.8E-08 59.6 8.6 27 163-189 146-172 (413)
223 PF01695 IstB_IS21: IstB-like 97.3 0.00065 1.4E-08 55.9 6.3 75 164-259 46-120 (178)
224 PRK06696 uridine kinase; Valid 97.3 0.00048 1E-08 59.0 5.7 42 148-189 2-46 (223)
225 COG1066 Sms Predicted ATP-depe 97.3 0.0023 5E-08 58.3 10.1 97 153-259 79-180 (456)
226 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0012 2.6E-08 53.1 7.7 125 164-300 24-153 (157)
227 cd03115 SRP The signal recogni 97.3 0.0014 3.1E-08 53.6 8.2 89 167-258 2-93 (173)
228 cd03263 ABC_subfamily_A The AB 97.3 0.0017 3.6E-08 55.4 8.9 27 163-189 26-52 (220)
229 KOG0743 AAA+-type ATPase [Post 97.3 0.059 1.3E-06 49.9 19.1 24 166-189 236-259 (457)
230 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.00029 6.2E-09 59.9 4.1 120 165-292 29-160 (213)
231 PRK13538 cytochrome c biogenes 97.3 0.0015 3.2E-08 55.2 8.4 27 163-189 25-51 (204)
232 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.0018 3.8E-08 56.0 9.0 27 163-189 25-51 (236)
233 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.002 4.3E-08 55.2 9.1 123 164-291 47-207 (224)
234 PF14532 Sigma54_activ_2: Sigm 97.2 0.00041 8.9E-09 54.6 4.4 43 147-189 1-45 (138)
235 PLN03186 DNA repair protein RA 97.2 0.0038 8.3E-08 56.8 11.2 94 164-258 122-229 (342)
236 PTZ00035 Rad51 protein; Provis 97.2 0.0056 1.2E-07 55.7 12.3 94 164-258 117-224 (337)
237 cd03235 ABC_Metallic_Cations A 97.2 0.0023 5E-08 54.3 9.4 27 163-189 23-49 (213)
238 cd03266 ABC_NatA_sodium_export 97.2 0.0015 3.3E-08 55.6 8.3 27 163-189 29-55 (218)
239 cd03244 ABCC_MRP_domain2 Domai 97.2 0.002 4.3E-08 55.1 9.0 27 163-189 28-54 (221)
240 COG0542 clpA ATP-binding subun 97.2 0.0027 6E-08 62.9 10.9 154 145-316 171-346 (786)
241 COG1223 Predicted ATPase (AAA+ 97.2 0.0091 2E-07 51.2 12.5 164 144-332 121-313 (368)
242 TIGR01188 drrA daunorubicin re 97.2 0.0031 6.8E-08 56.6 10.6 27 163-189 17-43 (302)
243 PRK10636 putative ABC transpor 97.2 0.0022 4.8E-08 63.6 10.3 26 164-189 26-51 (638)
244 PRK14722 flhF flagellar biosyn 97.2 0.0019 4E-08 59.3 9.0 59 164-223 136-195 (374)
245 PRK04301 radA DNA repair and r 97.2 0.0041 8.8E-08 56.3 11.1 93 164-258 101-209 (317)
246 PRK09544 znuC high-affinity zi 97.2 0.0026 5.6E-08 55.5 9.4 128 163-291 28-186 (251)
247 PRK15064 ABC transporter ATP-b 97.2 0.003 6.6E-08 61.4 10.8 27 163-189 25-51 (530)
248 COG1102 Cmk Cytidylate kinase 97.2 0.001 2.3E-08 52.7 6.0 45 167-225 2-46 (179)
249 PRK08233 hypothetical protein; 97.2 0.0019 4E-08 53.3 8.0 25 165-189 3-27 (182)
250 COG0468 RecA RecA/RadA recombi 97.2 0.0025 5.3E-08 56.0 8.9 91 164-259 59-153 (279)
251 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0046 1E-07 53.1 10.7 89 164-258 19-132 (229)
252 cd03264 ABC_drug_resistance_li 97.2 0.0025 5.5E-08 54.0 8.9 23 167-189 27-49 (211)
253 PF00485 PRK: Phosphoribulokin 97.2 0.0036 7.8E-08 52.3 9.7 82 167-251 1-87 (194)
254 PRK15455 PrkA family serine pr 97.2 0.00053 1.1E-08 65.5 5.0 45 145-189 77-127 (644)
255 TIGR02236 recomb_radA DNA repa 97.2 0.0048 1E-07 55.7 11.1 94 164-258 94-203 (310)
256 PRK11247 ssuB aliphatic sulfon 97.2 0.004 8.7E-08 54.5 10.3 127 163-290 36-198 (257)
257 PRK06871 DNA polymerase III su 97.2 0.016 3.4E-07 52.4 14.2 156 151-316 9-179 (325)
258 PRK13537 nodulation ABC transp 97.2 0.0046 9.9E-08 55.7 10.9 26 164-189 32-57 (306)
259 PF12061 DUF3542: Protein of u 97.2 0.0011 2.3E-08 57.9 6.3 77 10-93 297-373 (402)
260 PRK10867 signal recognition pa 97.2 0.0027 5.9E-08 59.5 9.5 26 164-189 99-124 (433)
261 TIGR00959 ffh signal recogniti 97.1 0.0029 6.3E-08 59.3 9.6 26 164-189 98-123 (428)
262 cd03215 ABC_Carb_Monos_II This 97.1 0.00087 1.9E-08 55.5 5.6 26 164-189 25-50 (182)
263 PF00154 RecA: recA bacterial 97.1 0.0045 9.7E-08 55.5 10.4 88 164-259 52-143 (322)
264 TIGR03771 anch_rpt_ABC anchore 97.1 0.0043 9.4E-08 53.1 10.1 26 164-189 5-30 (223)
265 PRK04328 hypothetical protein; 97.1 0.003 6.6E-08 55.0 9.2 89 164-258 22-139 (249)
266 COG0572 Udk Uridine kinase [Nu 97.1 0.0017 3.7E-08 54.5 7.2 26 164-189 7-32 (218)
267 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0032 6.9E-08 55.1 9.1 93 163-258 67-174 (274)
268 PRK14723 flhF flagellar biosyn 97.1 0.044 9.6E-07 54.8 18.0 25 165-189 185-209 (767)
269 cd03236 ABC_RNaseL_inhibitor_d 97.1 0.0037 8.1E-08 54.6 9.6 27 163-189 24-50 (255)
270 PRK11147 ABC transporter ATPas 97.1 0.0042 9.2E-08 61.7 11.2 27 163-189 27-53 (635)
271 cd03233 ABC_PDR_domain1 The pl 97.1 0.0043 9.4E-08 52.2 9.6 27 163-189 31-57 (202)
272 TIGR03499 FlhF flagellar biosy 97.1 0.0032 7E-08 55.9 9.2 88 164-256 193-281 (282)
273 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00094 2E-08 55.2 5.4 23 167-189 1-23 (183)
274 PRK14974 cell division protein 97.1 0.0071 1.5E-07 54.8 11.4 92 164-258 139-233 (336)
275 PRK13536 nodulation factor exp 97.1 0.0052 1.1E-07 56.1 10.7 27 163-189 65-91 (340)
276 COG3267 ExeA Type II secretory 97.1 0.02 4.4E-07 49.0 13.2 151 162-319 48-216 (269)
277 PRK09270 nucleoside triphospha 97.1 0.0044 9.6E-08 53.3 9.7 27 163-189 31-57 (229)
278 KOG0728 26S proteasome regulat 97.1 0.016 3.5E-07 49.4 12.5 163 146-334 148-349 (404)
279 PRK09519 recA DNA recombinatio 97.1 0.003 6.5E-08 63.0 9.5 87 164-258 59-149 (790)
280 TIGR00968 3a0106s01 sulfate AB 97.1 0.0031 6.8E-08 54.5 8.7 27 163-189 24-50 (237)
281 KOG0735 AAA+-type ATPase [Post 97.1 0.0021 4.5E-08 62.3 7.9 74 164-258 430-505 (952)
282 cd03369 ABCC_NFT1 Domain 2 of 97.1 0.0063 1.4E-07 51.4 10.3 27 163-189 32-58 (207)
283 smart00534 MUTSac ATPase domai 97.1 0.00023 4.9E-09 59.2 1.4 117 167-292 1-128 (185)
284 COG1875 NYN ribonuclease and A 97.1 0.0015 3.2E-08 58.6 6.3 38 148-185 228-265 (436)
285 KOG0738 AAA+-type ATPase [Post 97.1 0.01 2.2E-07 53.7 11.6 26 164-189 244-269 (491)
286 cd03231 ABC_CcmA_heme_exporter 97.1 0.0039 8.5E-08 52.4 8.8 27 163-189 24-50 (201)
287 KOG0736 Peroxisome assembly fa 97.1 0.009 1.9E-07 58.6 12.0 93 144-259 672-776 (953)
288 KOG0731 AAA+-type ATPase conta 97.1 0.0078 1.7E-07 59.4 11.9 152 145-320 312-499 (774)
289 cd03217 ABC_FeS_Assembly ABC-t 97.0 0.0024 5.2E-08 53.7 7.4 26 163-188 24-49 (200)
290 PRK08533 flagellar accessory p 97.0 0.006 1.3E-07 52.5 10.0 49 164-217 23-71 (230)
291 PRK06547 hypothetical protein; 97.0 0.0011 2.5E-08 54.1 5.2 33 157-189 7-39 (172)
292 PRK13409 putative ATPase RIL; 97.0 0.006 1.3E-07 59.9 11.1 27 163-189 97-123 (590)
293 TIGR03411 urea_trans_UrtD urea 97.0 0.0057 1.2E-07 53.0 9.9 26 164-189 27-52 (242)
294 TIGR00554 panK_bact pantothena 97.0 0.0055 1.2E-07 54.4 9.8 27 163-189 60-86 (290)
295 COG0396 sufC Cysteine desulfur 97.0 0.0049 1.1E-07 51.9 8.8 62 234-298 149-216 (251)
296 PRK11823 DNA repair protein Ra 97.0 0.003 6.5E-08 59.8 8.5 95 155-258 68-167 (446)
297 cd02025 PanK Pantothenate kina 97.0 0.0049 1.1E-07 52.6 9.1 23 167-189 1-23 (220)
298 cd03300 ABC_PotA_N PotA is an 97.0 0.0043 9.3E-08 53.4 8.8 26 164-189 25-50 (232)
299 cd03283 ABC_MutS-like MutS-lik 97.0 0.0037 8.1E-08 52.5 8.2 25 165-189 25-49 (199)
300 PF13238 AAA_18: AAA domain; P 97.0 0.00068 1.5E-08 52.3 3.5 22 168-189 1-22 (129)
301 PRK08769 DNA polymerase III su 97.0 0.02 4.4E-07 51.6 13.2 152 151-315 11-184 (319)
302 TIGR01817 nifA Nif-specific re 97.0 0.0037 8E-08 60.8 9.3 47 143-189 195-243 (534)
303 PRK13545 tagH teichoic acids e 97.0 0.006 1.3E-07 58.3 10.3 123 163-290 48-207 (549)
304 PRK11889 flhF flagellar biosyn 97.0 0.0055 1.2E-07 56.3 9.5 26 164-189 240-265 (436)
305 PRK05342 clpX ATP-dependent pr 97.0 0.0025 5.4E-08 59.5 7.6 47 143-189 70-132 (412)
306 TIGR01420 pilT_fam pilus retra 97.0 0.0011 2.4E-08 60.6 5.2 114 163-289 120-233 (343)
307 TIGR00064 ftsY signal recognit 97.0 0.0066 1.4E-07 53.5 9.9 39 164-205 71-109 (272)
308 COG0563 Adk Adenylate kinase a 97.0 0.0016 3.4E-08 53.6 5.5 23 167-189 2-24 (178)
309 COG1618 Predicted nucleotide k 97.0 0.0011 2.5E-08 52.4 4.4 25 165-189 5-29 (179)
310 cd03254 ABCC_Glucan_exporter_l 97.0 0.0076 1.6E-07 51.7 10.1 27 163-189 27-53 (229)
311 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0073 1.6E-07 53.0 10.0 40 164-206 35-74 (259)
312 KOG2035 Replication factor C, 97.0 0.0085 1.8E-07 51.8 9.9 174 146-337 15-217 (351)
313 cd01124 KaiC KaiC is a circadi 97.0 0.0042 9.2E-08 51.4 8.1 45 167-216 1-45 (187)
314 PRK10636 putative ABC transpor 97.0 0.0087 1.9E-07 59.5 11.6 127 163-292 336-493 (638)
315 PRK06090 DNA polymerase III su 97.0 0.034 7.4E-07 50.1 14.3 154 151-315 10-179 (319)
316 PF13671 AAA_33: AAA domain; P 96.9 0.00084 1.8E-08 53.0 3.6 23 167-189 1-23 (143)
317 PRK05480 uridine/cytidine kina 96.9 0.00091 2E-08 56.6 4.0 27 163-189 4-30 (209)
318 TIGR01425 SRP54_euk signal rec 96.9 0.0046 9.9E-08 57.7 8.8 26 164-189 99-124 (429)
319 PHA00729 NTP-binding motif con 96.9 0.0014 3.1E-08 55.5 5.1 34 156-189 8-41 (226)
320 TIGR02974 phageshock_pspF psp 96.9 0.0061 1.3E-07 55.4 9.5 44 146-189 1-46 (329)
321 TIGR00416 sms DNA repair prote 96.9 0.0053 1.1E-07 58.2 9.4 96 154-258 81-181 (454)
322 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0034 7.5E-08 55.1 7.6 125 147-288 62-186 (264)
323 PLN03073 ABC transporter F fam 96.9 0.0059 1.3E-07 61.3 10.1 126 164-292 534-690 (718)
324 PRK10463 hydrogenase nickel in 96.9 0.0053 1.2E-07 54.2 8.7 32 158-189 97-128 (290)
325 TIGR00708 cobA cob(I)alamin ad 96.9 0.0068 1.5E-07 49.3 8.6 119 165-287 5-141 (173)
326 PRK14527 adenylate kinase; Pro 96.9 0.0016 3.4E-08 54.3 5.2 27 163-189 4-30 (191)
327 PRK13409 putative ATPase RIL; 96.9 0.0095 2.1E-07 58.5 11.3 128 163-292 363-520 (590)
328 PRK07667 uridine kinase; Provi 96.9 0.0026 5.6E-08 53.2 6.4 37 153-189 3-41 (193)
329 PRK06964 DNA polymerase III su 96.9 0.035 7.5E-07 50.6 14.0 69 246-315 131-203 (342)
330 cd03253 ABCC_ATM1_transporter 96.9 0.0069 1.5E-07 52.3 9.2 27 163-189 25-51 (236)
331 PF13481 AAA_25: AAA domain; P 96.9 0.0057 1.2E-07 50.9 8.4 44 164-207 31-81 (193)
332 PF12775 AAA_7: P-loop contain 96.9 0.0012 2.6E-08 58.2 4.5 55 154-212 23-77 (272)
333 COG0194 Gmk Guanylate kinase [ 96.9 0.0036 7.9E-08 51.0 6.8 26 164-189 3-28 (191)
334 PF06745 KaiC: KaiC; InterPro 96.9 0.0021 4.6E-08 55.1 5.9 89 164-258 18-126 (226)
335 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.3E-08 57.0 3.8 23 167-189 8-30 (229)
336 TIGR00235 udk uridine kinase. 96.9 0.0011 2.4E-08 56.1 3.8 27 163-189 4-30 (207)
337 COG2607 Predicted ATPase (AAA+ 96.9 0.014 3.1E-07 49.5 10.2 46 144-189 60-109 (287)
338 PRK13657 cyclic beta-1,2-gluca 96.9 0.0052 1.1E-07 60.6 9.1 27 163-189 359-385 (588)
339 PRK06762 hypothetical protein; 96.8 0.0011 2.5E-08 53.8 3.7 25 165-189 2-26 (166)
340 TIGR00390 hslU ATP-dependent p 96.8 0.0032 6.9E-08 58.2 6.9 46 144-189 12-71 (441)
341 PRK12726 flagellar biosynthesi 96.8 0.0095 2.1E-07 54.5 9.8 90 164-258 205-296 (407)
342 cd03213 ABCG_EPDR ABCG transpo 96.8 0.0055 1.2E-07 51.2 7.9 27 163-189 33-59 (194)
343 PRK11000 maltose/maltodextrin 96.8 0.0056 1.2E-07 56.6 8.6 126 164-290 28-198 (369)
344 PRK09536 btuD corrinoid ABC tr 96.8 0.0093 2E-07 55.6 10.0 126 163-291 27-204 (402)
345 TIGR02655 circ_KaiC circadian 96.8 0.0099 2.1E-07 57.1 10.4 99 154-258 250-364 (484)
346 PRK05022 anaerobic nitric oxid 96.8 0.008 1.7E-07 58.1 9.9 61 144-207 187-249 (509)
347 PRK13531 regulatory ATPase Rav 96.8 0.0022 4.7E-08 60.4 5.7 44 144-189 20-63 (498)
348 COG4618 ArpD ABC-type protease 96.8 0.007 1.5E-07 56.7 8.8 27 163-189 360-386 (580)
349 cd02019 NK Nucleoside/nucleoti 96.8 0.0012 2.6E-08 45.1 3.1 23 167-189 1-23 (69)
350 cd03250 ABCC_MRP_domain1 Domai 96.8 0.012 2.5E-07 49.6 9.8 134 163-300 29-200 (204)
351 PTZ00301 uridine kinase; Provi 96.8 0.0013 2.8E-08 55.7 3.8 25 165-189 3-27 (210)
352 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.7E-08 54.6 3.7 26 164-189 2-27 (188)
353 PRK14721 flhF flagellar biosyn 96.8 0.011 2.4E-07 55.1 10.2 26 164-189 190-215 (420)
354 PRK15439 autoinducer 2 ABC tra 96.8 0.0082 1.8E-07 58.1 9.8 125 163-290 35-204 (510)
355 PRK12723 flagellar biosynthesi 96.8 0.01 2.2E-07 55.0 9.8 90 164-257 173-264 (388)
356 cd03243 ABC_MutS_homologs The 96.8 0.0007 1.5E-08 57.1 2.1 23 165-187 29-51 (202)
357 COG2274 SunT ABC-type bacterio 96.8 0.0076 1.6E-07 60.1 9.6 27 163-189 497-523 (709)
358 TIGR03575 selen_PSTK_euk L-ser 96.8 0.0062 1.4E-07 55.2 8.3 22 168-189 2-23 (340)
359 PRK05973 replicative DNA helic 96.8 0.013 2.9E-07 50.3 9.9 148 163-320 62-228 (237)
360 PRK15064 ABC transporter ATP-b 96.8 0.0076 1.6E-07 58.7 9.5 126 164-292 344-501 (530)
361 PRK11819 putative ABC transpor 96.8 0.01 2.3E-07 58.0 10.5 27 163-189 31-57 (556)
362 PRK08972 fliI flagellum-specif 96.8 0.0033 7.2E-08 58.6 6.5 91 163-258 160-263 (444)
363 TIGR02868 CydC thiol reductant 96.8 0.0056 1.2E-07 59.5 8.6 27 163-189 359-385 (529)
364 PF07728 AAA_5: AAA domain (dy 96.8 0.0043 9.3E-08 48.7 6.4 41 168-214 2-42 (139)
365 PRK11607 potG putrescine trans 96.8 0.014 3E-07 54.1 10.6 126 164-292 44-216 (377)
366 TIGR03258 PhnT 2-aminoethylpho 96.8 0.013 2.8E-07 54.0 10.4 26 164-189 30-55 (362)
367 PRK06995 flhF flagellar biosyn 96.8 0.0089 1.9E-07 56.7 9.3 26 164-189 255-280 (484)
368 PRK06002 fliI flagellum-specif 96.8 0.0064 1.4E-07 56.9 8.3 92 163-258 163-265 (450)
369 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0014 3.1E-08 55.9 3.7 121 164-292 30-160 (222)
370 cd01125 repA Hexameric Replica 96.7 0.015 3.2E-07 50.4 10.1 143 167-310 3-198 (239)
371 PRK03839 putative kinase; Prov 96.7 0.0014 3.1E-08 54.0 3.6 23 167-189 2-24 (180)
372 PRK08699 DNA polymerase III su 96.7 0.017 3.8E-07 52.3 10.8 69 246-315 112-184 (325)
373 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0017 3.6E-08 54.8 3.9 120 164-293 28-158 (204)
374 PRK11650 ugpC glycerol-3-phosp 96.7 0.0089 1.9E-07 54.9 9.0 127 164-291 29-200 (356)
375 PRK10938 putative molybdenum t 96.7 0.011 2.5E-07 56.8 10.1 27 163-189 27-53 (490)
376 PRK05922 type III secretion sy 96.7 0.0054 1.2E-07 57.3 7.5 91 163-258 155-258 (434)
377 PRK11147 ABC transporter ATPas 96.7 0.0092 2E-07 59.4 9.7 126 164-292 344-503 (635)
378 PRK05986 cob(I)alamin adenolsy 96.7 0.01 2.2E-07 49.0 8.3 119 164-287 21-159 (191)
379 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0036 7.7E-08 48.7 5.3 39 151-189 6-46 (133)
380 COG4088 Predicted nucleotide k 96.7 0.0019 4.1E-08 53.3 3.9 135 166-316 2-139 (261)
381 cd02027 APSK Adenosine 5'-phos 96.7 0.012 2.5E-07 47.0 8.5 23 167-189 1-23 (149)
382 PF01583 APS_kinase: Adenylyls 96.7 0.0022 4.7E-08 51.3 4.2 36 165-203 2-37 (156)
383 PF07724 AAA_2: AAA domain (Cd 96.7 0.0013 2.8E-08 53.8 2.9 42 165-209 3-45 (171)
384 PRK11160 cysteine/glutathione 96.7 0.0099 2.1E-07 58.4 9.7 27 163-189 364-390 (574)
385 PRK11432 fbpC ferric transport 96.7 0.009 1.9E-07 54.8 8.8 27 163-189 30-56 (351)
386 cd02028 UMPK_like Uridine mono 96.7 0.0044 9.4E-08 51.1 6.1 23 167-189 1-23 (179)
387 PRK13765 ATP-dependent proteas 96.7 0.0039 8.4E-08 61.3 6.7 74 144-222 31-104 (637)
388 KOG0735 AAA+-type ATPase [Post 96.7 0.075 1.6E-06 52.0 14.9 163 146-332 669-864 (952)
389 PF08433 KTI12: Chromatin asso 96.7 0.0059 1.3E-07 53.7 7.2 24 166-189 2-25 (270)
390 PRK05703 flhF flagellar biosyn 96.7 0.011 2.4E-07 55.6 9.4 87 165-256 221-308 (424)
391 PRK11288 araG L-arabinose tran 96.7 0.012 2.6E-07 56.8 10.0 26 164-189 278-303 (501)
392 TIGR02902 spore_lonB ATP-depen 96.7 0.0035 7.6E-08 60.7 6.2 45 145-189 66-110 (531)
393 KOG0927 Predicted transporter 96.7 0.0048 1E-07 58.1 6.7 33 164-196 100-132 (614)
394 PRK05201 hslU ATP-dependent pr 96.7 0.0072 1.6E-07 56.0 7.8 47 143-189 14-74 (443)
395 PRK11819 putative ABC transpor 96.7 0.015 3.1E-07 57.0 10.5 134 163-300 348-515 (556)
396 TIGR03265 PhnT2 putative 2-ami 96.7 0.0095 2.1E-07 54.7 8.7 128 164-292 29-201 (353)
397 PF03308 ArgK: ArgK protein; 96.7 0.0052 1.1E-07 52.9 6.4 60 153-213 15-76 (266)
398 PRK00131 aroK shikimate kinase 96.6 0.002 4.3E-08 52.6 3.8 26 164-189 3-28 (175)
399 TIGR03375 type_I_sec_LssB type 96.6 0.011 2.4E-07 59.5 9.9 27 163-189 489-515 (694)
400 COG1117 PstB ABC-type phosphat 96.6 0.0039 8.4E-08 51.9 5.3 27 163-189 31-57 (253)
401 PRK09099 type III secretion sy 96.6 0.0086 1.9E-07 56.2 8.3 92 163-258 161-264 (441)
402 TIGR00958 3a01208 Conjugate Tr 96.6 0.017 3.7E-07 58.3 11.1 27 163-189 505-531 (711)
403 PRK00625 shikimate kinase; Pro 96.6 0.0019 4.2E-08 52.8 3.5 23 167-189 2-24 (173)
404 TIGR00764 lon_rel lon-related 96.6 0.008 1.7E-07 59.1 8.4 74 144-222 18-91 (608)
405 COG0467 RAD55 RecA-superfamily 96.6 0.0059 1.3E-07 53.6 6.8 89 163-257 21-134 (260)
406 PRK04040 adenylate kinase; Pro 96.6 0.0021 4.6E-08 53.4 3.8 25 165-189 2-26 (188)
407 PRK12724 flagellar biosynthesi 96.6 0.011 2.3E-07 54.9 8.7 25 165-189 223-247 (432)
408 PRK15429 formate hydrogenlyase 96.6 0.0052 1.1E-07 61.7 7.3 45 145-189 377-423 (686)
409 COG3910 Predicted ATPase [Gene 96.6 0.0082 1.8E-07 49.0 6.9 26 164-189 36-61 (233)
410 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0085 1.8E-07 48.5 7.2 116 166-302 22-155 (162)
411 PF03205 MobB: Molybdopterin g 96.6 0.0038 8.3E-08 49.2 5.0 39 166-206 1-39 (140)
412 cd03285 ABC_MSH2_euk MutS2 hom 96.6 0.00098 2.1E-08 57.0 1.7 120 164-292 29-159 (222)
413 TIGR00382 clpX endopeptidase C 96.6 0.0084 1.8E-07 55.8 7.9 47 143-189 76-140 (413)
414 cd03276 ABC_SMC6_euk Eukaryoti 96.6 0.038 8.2E-07 46.4 11.2 23 165-187 21-43 (198)
415 TIGR02203 MsbA_lipidA lipid A 96.6 0.0099 2.2E-07 58.4 8.9 27 163-189 356-382 (571)
416 PLN03073 ABC transporter F fam 96.6 0.012 2.7E-07 59.0 9.6 25 164-188 202-226 (718)
417 PF00625 Guanylate_kin: Guanyl 96.6 0.0039 8.6E-08 51.6 5.2 36 165-203 2-37 (183)
418 PRK10416 signal recognition pa 96.6 0.021 4.4E-07 51.6 10.2 26 164-189 113-138 (318)
419 COG3640 CooC CO dehydrogenase 96.6 0.0048 1E-07 52.1 5.6 41 167-209 2-42 (255)
420 PRK09452 potA putrescine/sperm 96.6 0.012 2.5E-07 54.5 8.7 27 163-189 38-64 (375)
421 PRK15453 phosphoribulokinase; 96.6 0.017 3.7E-07 50.6 9.2 81 163-246 3-89 (290)
422 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0032 7E-08 52.9 4.7 22 165-186 28-49 (200)
423 PRK06851 hypothetical protein; 96.6 0.035 7.5E-07 50.9 11.6 46 162-209 211-256 (367)
424 PRK04132 replication factor C 96.6 0.036 7.8E-07 56.2 12.6 125 173-317 574-703 (846)
425 PRK07993 DNA polymerase III su 96.6 0.07 1.5E-06 48.6 13.5 155 151-315 9-179 (334)
426 COG1703 ArgK Putative periplas 96.6 0.0039 8.4E-08 54.5 5.0 60 154-214 38-99 (323)
427 TIGR03719 ABC_ABC_ChvD ATP-bin 96.5 0.018 3.8E-07 56.4 10.1 27 163-189 29-55 (552)
428 TIGR03498 FliI_clade3 flagella 96.5 0.007 1.5E-07 56.5 6.9 92 163-258 138-241 (418)
429 COG0465 HflB ATP-dependent Zn 96.5 0.038 8.2E-07 53.5 11.9 165 144-332 150-349 (596)
430 PF00910 RNA_helicase: RNA hel 96.5 0.002 4.4E-08 48.3 2.7 22 168-189 1-22 (107)
431 PF00006 ATP-synt_ab: ATP synt 96.5 0.037 8E-07 46.9 10.6 88 164-258 14-116 (215)
432 cd02023 UMPK Uridine monophosp 96.5 0.0019 4.2E-08 54.1 2.9 23 167-189 1-23 (198)
433 cd00227 CPT Chloramphenicol (C 96.5 0.0032 6.9E-08 51.7 4.1 25 165-189 2-26 (175)
434 PRK12678 transcription termina 96.5 0.0067 1.5E-07 58.1 6.7 89 163-258 414-514 (672)
435 PRK05439 pantothenate kinase; 96.5 0.028 6.1E-07 50.3 10.3 27 163-189 84-110 (311)
436 TIGR03719 ABC_ABC_ChvD ATP-bin 96.5 0.018 3.8E-07 56.4 9.9 127 163-292 346-506 (552)
437 PRK08149 ATP synthase SpaL; Va 96.5 0.016 3.5E-07 54.1 9.0 91 163-258 149-252 (428)
438 PRK08927 fliI flagellum-specif 96.5 0.025 5.4E-07 53.0 10.2 91 163-258 156-259 (442)
439 TIGR02322 phosphon_PhnN phosph 96.5 0.0026 5.7E-08 52.4 3.4 24 166-189 2-25 (179)
440 cd01122 GP4d_helicase GP4d_hel 96.5 0.034 7.4E-07 49.0 10.7 41 164-206 29-69 (271)
441 PF06309 Torsin: Torsin; Inte 96.5 0.018 3.9E-07 44.1 7.5 48 144-191 25-79 (127)
442 COG1419 FlhF Flagellar GTP-bin 96.5 0.037 8.1E-07 50.8 10.9 72 152-224 186-262 (407)
443 KOG0062 ATPase component of AB 96.5 0.004 8.6E-08 58.3 4.8 123 164-292 105-261 (582)
444 PRK00889 adenylylsulfate kinas 96.5 0.0034 7.4E-08 51.5 4.0 26 164-189 3-28 (175)
445 PRK14737 gmk guanylate kinase; 96.5 0.0052 1.1E-07 51.0 5.1 26 164-189 3-28 (186)
446 TIGR02030 BchI-ChlI magnesium 96.5 0.0049 1.1E-07 56.0 5.3 45 145-189 5-49 (337)
447 KOG0727 26S proteasome regulat 96.4 0.1 2.2E-06 44.7 12.7 44 146-189 157-213 (408)
448 cd03284 ABC_MutS1 MutS1 homolo 96.4 0.0042 9.1E-08 52.9 4.6 23 165-187 30-52 (216)
449 COG2401 ABC-type ATPase fused 96.4 0.0024 5.3E-08 58.2 3.2 134 164-298 408-580 (593)
450 KOG0739 AAA+-type ATPase [Post 96.4 0.013 2.9E-07 51.2 7.5 91 145-259 134-237 (439)
451 cd01132 F1_ATPase_alpha F1 ATP 96.4 0.022 4.7E-07 49.9 8.9 91 164-259 68-173 (274)
452 cd02020 CMPK Cytidine monophos 96.4 0.0026 5.7E-08 50.3 3.0 23 167-189 1-23 (147)
453 PRK07721 fliI flagellum-specif 96.4 0.012 2.6E-07 55.3 7.9 92 163-258 156-259 (438)
454 cd01136 ATPase_flagellum-secre 96.4 0.031 6.7E-07 50.4 10.1 91 163-258 67-170 (326)
455 PRK06217 hypothetical protein; 96.4 0.0028 6E-08 52.5 3.2 23 167-189 3-25 (183)
456 PRK10789 putative multidrug tr 96.4 0.02 4.3E-07 56.3 9.6 27 163-189 339-365 (569)
457 CHL00081 chlI Mg-protoporyphyr 96.4 0.0052 1.1E-07 55.9 5.0 46 144-189 17-62 (350)
458 PRK13949 shikimate kinase; Pro 96.4 0.0033 7.3E-08 51.3 3.5 23 167-189 3-25 (169)
459 PRK00279 adk adenylate kinase; 96.4 0.0059 1.3E-07 51.9 5.1 23 167-189 2-24 (215)
460 PF00158 Sigma54_activat: Sigm 96.4 0.0062 1.4E-07 49.6 5.0 44 146-189 1-46 (168)
461 PRK00409 recombination and DNA 96.4 0.61 1.3E-05 47.5 20.1 24 164-187 326-349 (782)
462 KOG3347 Predicted nucleotide k 96.4 0.0061 1.3E-07 47.7 4.6 105 165-293 7-111 (176)
463 PF07726 AAA_3: ATPase family 96.4 0.0023 5E-08 49.0 2.3 28 168-198 2-29 (131)
464 PRK12597 F0F1 ATP synthase sub 96.4 0.017 3.8E-07 54.4 8.6 93 163-257 141-247 (461)
465 cd02021 GntK Gluconate kinase 96.4 0.0028 6E-08 50.5 2.9 23 167-189 1-23 (150)
466 PRK11174 cysteine/glutathione 96.4 0.023 5E-07 56.1 10.0 27 163-189 374-400 (588)
467 PRK13947 shikimate kinase; Pro 96.4 0.0034 7.4E-08 51.2 3.5 23 167-189 3-25 (171)
468 PLN02165 adenylate isopentenyl 96.4 0.0042 9.1E-08 55.8 4.3 30 160-189 38-67 (334)
469 PF05970 PIF1: PIF1-like helic 96.4 0.009 1.9E-07 55.2 6.6 38 152-189 9-46 (364)
470 COG1124 DppF ABC-type dipeptid 96.4 0.005 1.1E-07 52.3 4.4 127 163-292 31-208 (252)
471 cd00984 DnaB_C DnaB helicase C 96.4 0.033 7.2E-07 48.2 9.8 41 164-206 12-52 (242)
472 PRK00300 gmk guanylate kinase; 96.3 0.0035 7.5E-08 52.8 3.5 26 164-189 4-29 (205)
473 PHA02774 E1; Provisional 96.3 0.0097 2.1E-07 57.1 6.8 48 152-204 420-468 (613)
474 PRK10875 recD exonuclease V su 96.3 0.014 3.1E-07 57.2 8.2 56 164-219 166-221 (615)
475 PF10236 DAP3: Mitochondrial r 96.3 0.19 4.2E-06 45.2 14.8 23 297-319 258-280 (309)
476 TIGR01351 adk adenylate kinase 96.3 0.0056 1.2E-07 51.9 4.7 22 168-189 2-23 (210)
477 PRK07196 fliI flagellum-specif 96.3 0.018 3.8E-07 53.9 8.3 27 163-189 153-179 (434)
478 TIGR03796 NHPM_micro_ABC1 NHPM 96.3 0.02 4.4E-07 57.8 9.5 27 163-189 503-529 (710)
479 TIGR02857 CydD thiol reductant 96.3 0.024 5.1E-07 55.2 9.7 27 163-189 346-372 (529)
480 cd01130 VirB11-like_ATPase Typ 96.3 0.0046 9.9E-08 51.4 4.1 121 153-288 14-137 (186)
481 PRK03846 adenylylsulfate kinas 96.3 0.0061 1.3E-07 51.1 4.9 27 163-189 22-48 (198)
482 PRK10751 molybdopterin-guanine 96.3 0.0041 9E-08 50.7 3.7 26 164-189 5-30 (173)
483 cd00071 GMPK Guanosine monopho 96.3 0.0036 7.8E-08 49.2 3.2 23 167-189 1-23 (137)
484 TIGR01192 chvA glucan exporter 96.3 0.022 4.9E-07 56.1 9.4 27 163-189 359-385 (585)
485 TIGR02546 III_secr_ATP type II 96.3 0.023 4.9E-07 53.3 9.0 91 163-258 143-246 (422)
486 cd02024 NRK1 Nicotinamide ribo 96.3 0.0031 6.8E-08 52.2 2.9 23 167-189 1-23 (187)
487 TIGR03263 guanyl_kin guanylate 96.3 0.0034 7.4E-08 51.7 3.2 24 166-189 2-25 (180)
488 PRK14528 adenylate kinase; Pro 96.3 0.0071 1.5E-07 50.2 5.1 24 166-189 2-25 (186)
489 PRK14530 adenylate kinase; Pro 96.3 0.0037 8.1E-08 53.2 3.5 24 166-189 4-27 (215)
490 cd01135 V_A-ATPase_B V/A-type 96.3 0.035 7.5E-07 48.6 9.3 95 164-258 68-177 (276)
491 KOG0652 26S proteasome regulat 96.3 0.13 2.7E-06 44.4 12.2 46 144-189 171-229 (424)
492 PF13245 AAA_19: Part of AAA d 96.3 0.014 3E-07 40.7 5.5 26 164-189 9-34 (76)
493 COG3598 RepA RecA-family ATPas 96.2 0.021 4.5E-07 50.6 7.7 60 166-225 90-157 (402)
494 PRK09302 circadian clock prote 96.2 0.035 7.6E-07 53.8 10.2 89 164-258 272-374 (509)
495 cd01672 TMPK Thymidine monopho 96.2 0.012 2.5E-07 49.1 6.1 23 167-189 2-24 (200)
496 TIGR00665 DnaB replicative DNA 96.2 0.37 8E-06 45.7 16.9 41 164-206 194-234 (434)
497 cd00046 DEXDc DEAD-like helica 96.2 0.017 3.7E-07 44.5 6.8 37 167-204 2-38 (144)
498 PRK09280 F0F1 ATP synthase sub 96.2 0.039 8.5E-07 52.0 10.0 94 163-258 142-249 (463)
499 PF13086 AAA_11: AAA domain; P 96.2 0.014 3E-07 49.8 6.7 53 167-219 19-75 (236)
500 TIGR01842 type_I_sec_PrtD type 96.2 0.033 7.2E-07 54.4 10.0 27 163-189 342-368 (544)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-43 Score=350.31 Aligned_cols=318 Identities=41% Similarity=0.705 Sum_probs=269.0
Q ss_pred hhhHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHh
Q 045709 11 CDDTISRCLDCTVRKAGYVCNLQDNIRALKEEVRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWISRVQEVGSKVEKLKE 90 (337)
Q Consensus 11 ~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~~ed~ld 90 (337)
++..++++.+++.+++..+.+.++++..|+++|..|+.++.| ++.++. ....+..|...+++++|++||+++
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~ 76 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRD-DLERRVNWEEDVGDLVYLAEDIIW 76 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888889999999999999999999999999999 455443 356788999999999999999999
Q ss_pred hcCC-----------C------------CCCCc---hhchHHHHHHHHHHHHHHHHhcCCCCcccc-CCCCCCCCCCCCC
Q 045709 91 EEYP-----------E------------SRCSK---STYKLGKKVFRTLREVRSLRQEGDFKDVAQ-PVPENPVDERPLP 143 (337)
Q Consensus 91 ~~~~-----------~------------~~~~~---~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 143 (337)
.+.. . ++|.. ..|.+++++-++.+.++.+..++.|..+.. ..|......+|..
T Consensus 77 ~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 77 LFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCC
Confidence 8871 1 22222 446677888888888888887766665543 2222223333333
Q ss_pred Ccc-ccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTV-VGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
+.. ||.+..++++.+.|.+++..+++|+||||+||||||+.++|+...+..+|+.++||++|+.++...++.+|+..++
T Consensus 157 ~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 157 SESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 333 9999999999999999888999999999999999999999999338999999999999999999999999999999
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhh-ccCCceeecC
Q 045709 223 LFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQ-MEAHRSFKVE 301 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~-~~~~~~~~l~ 301 (337)
.....+...+..+.+..|.+.|.++||+|||||||+..+|+.++.++|...+| |+|++|||+..||.. +++...++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g-~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENG-SKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCC-eEEEEEeccHhhhhccccCCcccccc
Confidence 87665566666889999999999999999999999999999999999999888 999999999999998 7788899999
Q ss_pred CCCHHHHHHHHhHhhCCCCCCCCCChHHHHHHhhcC
Q 045709 302 CLRYDDAWKLFEQKVGADTLDSHPDIPELAETLAKD 337 (337)
Q Consensus 302 ~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~k 337 (337)
+|+++|||+||++.+|.......+.++++|++||+|
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~k 351 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEK 351 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHH
Confidence 999999999999999998666667799999999975
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=4.6e-31 Score=235.65 Aligned_cols=186 Identities=31% Similarity=0.576 Sum_probs=148.2
Q ss_pred chhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc
Q 045709 149 LQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE 226 (337)
Q Consensus 149 r~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 226 (337)
|+.++++|.+.|.. ++.++|+|+|+||+||||||..++++. ....+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78899999999988 689999999999999999999999985 358999999999999999999999999999988754
Q ss_pred cc-cCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhccC-CceeecCCCC
Q 045709 227 SW-KNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQMEA-HRSFKVECLR 304 (337)
Q Consensus 227 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~-~~~~~l~~L~ 304 (337)
.. ...+.......+.+.|.++++||||||||+...|+.+...++....| |+||||||+..++..++. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~-~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSG-SKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS--EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 33 45677889999999999999999999999999999998888877778 999999999999877654 6789999999
Q ss_pred HHHHHHHHhHhhCCCCCCCCCChHHHHHHhhc
Q 045709 305 YDDAWKLFEQKVGADTLDSHPDIPELAETLAK 336 (337)
Q Consensus 305 ~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~ 336 (337)
.+||++||++.++......++.+.+++++|++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVE 190 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 99999999999986652334556667777764
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=5.6e-24 Score=221.10 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=141.9
Q ss_pred CccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe---cCc-----------
Q 045709 144 PTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV---SRD----------- 207 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~----------- 207 (337)
+.+||++..++++..+|.- ++.++|+|+||||+||||||+.+|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 5689999999999988743 478999999999999999999999988 678998888742 111
Q ss_pred cC-HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCCh
Q 045709 208 LQ-LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREF 286 (337)
Q Consensus 208 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~ 286 (337)
.. ...+..+++..+..... ..... ...+++.+.++++||||||||+..+|+.+.......++| |+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G-srIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG-SRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC-cEEEEEeCcH
Confidence 01 12344445544422111 01111 245777899999999999999999998887655555678 9999999999
Q ss_pred hHHhhccCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHHhhcC
Q 045709 287 GVCGQMEAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAETLAKD 337 (337)
Q Consensus 287 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~k 337 (337)
.++..++..++|+++.|++++||+||+++||... ..++++.+++++|+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHH
Confidence 9998777778999999999999999999999875 3455689999999864
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=2.8e-12 Score=119.64 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=118.3
Q ss_pred CCCccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 142 LPPTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 142 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
.|+.++||++++++|...+.+ .....+.|+|++|+|||++++.++++.. .....-..+++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 356799999999999888743 3456788999999999999999999872 22223456778777777888899999
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCcc------ccccccCCCCCCCCC-CcEEEEeeCChhH
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELV------DLDQVGLPIPSRTSV-SNKVVFTTREFGV 288 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~g-~s~IiiTtr~~~v 288 (337)
+.++..........+..+....+.+.+. +++.+||||+++... .+..+...+.. ..+ +-.+|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 9998753222234456777777777775 456899999998753 12222221211 122 0235666665443
Q ss_pred Hhhcc-------CCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CGQME-------AHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
...+. ....+.+++++.++..+++..++
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 32221 12467999999999999999886
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=8.6e-11 Score=108.53 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=113.6
Q ss_pred CCccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC---cEEEEEEecCccCHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF---DFVIWVVVSRDLQLEKIQE 215 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 215 (337)
|+.++||+++++.|...|.. ...+.+.|+|++|+|||++++.+++......... -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35799999999999998864 3456899999999999999999998762111111 2467888877777888999
Q ss_pred HHHHHhC---CCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCcc-c----cccccCC--CCCCC-CCCcEEEEe
Q 045709 216 SIAKKIG---LFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELV-D----LDQVGLP--IPSRT-SVSNKVVFT 282 (337)
Q Consensus 216 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~l~~~--l~~~~-~g~s~IiiT 282 (337)
.|+.++. ...+ ....+..+....+.+.+. +++++||||+++... . +..+... ..... .. ..+|.+
T Consensus 94 ~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~-v~lI~i 171 (365)
T TIGR02928 94 ELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK-VGVIGI 171 (365)
T ss_pred HHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe-EEEEEE
Confidence 9999883 2211 123345566666666663 567899999998762 1 1222111 11111 12 345555
Q ss_pred eCChhHHhhcc-------CCceeecCCCCHHHHHHHHhHhhC
Q 045709 283 TREFGVCGQME-------AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 283 tr~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
|........+. ....+.++|++.++..+++..++.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 54443221111 124689999999999999999873
No 6
>PF05729 NACHT: NACHT domain
Probab=99.35 E-value=1.1e-11 Score=101.14 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=89.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCC----CcEEEEEEecCccCHH---HHHHHHHHHhCCCCccccCCCHHHHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNH----FDFVIWVVVSRDLQLE---KIQESIAKKIGLFNESWKNKSMQEKAQ 238 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 238 (337)
+++.|+|.+|+||||+++.++..... ... +...+|.+........ .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 47899999999999999999988732 222 4567777765543322 34444444332211 11111
Q ss_pred HHHHH-hcCCcEEEEEecCCCccc---------ccc-ccCCCCC-CCCCCcEEEEeeCChhH---HhhccCCceeecCCC
Q 045709 239 EIFKI-LSKKKFVLLLDDIWELVD---------LDQ-VGLPIPS-RTSVSNKVVFTTREFGV---CGQMEAHRSFKVECL 303 (337)
Q Consensus 239 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~-l~~~l~~-~~~g~s~IiiTtr~~~v---~~~~~~~~~~~l~~L 303 (337)
.+... ...++++||||++++... +.. +...++. ...+ ++++||||.... .........+.+++|
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPG-VKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCC-CeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 22222 257899999999986533 111 2122222 2345 899999998766 333444568999999
Q ss_pred CHHHHHHHHhHhh
Q 045709 304 RYDDAWKLFEQKV 316 (337)
Q Consensus 304 ~~~ea~~Lf~~~~ 316 (337)
++++..+++.++.
T Consensus 151 ~~~~~~~~~~~~f 163 (166)
T PF05729_consen 151 SEEDIKQYLRKYF 163 (166)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998775
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=3.5e-11 Score=103.69 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=87.9
Q ss_pred cccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH--------
Q 045709 146 VVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI-------- 217 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 217 (337)
|+||+.+++.|.+++..+....+.|+|+.|+|||+|++.+.+.. ...-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 78999999999999988778999999999999999999999987 222223444444333222 112222
Q ss_pred --HHHhCCCCcc--------ccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCcc-cc----------ccccCCCCCCCC
Q 045709 218 --AKKIGLFNES--------WKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELV-DL----------DQVGLPIPSRTS 274 (337)
Q Consensus 218 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~----------~~l~~~l~~~~~ 274 (337)
...+....+. ............+.+.+. +++++||+||++... .. ..+........+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112110000 011122233344444443 345999999997765 11 111111222223
Q ss_pred CCcEEEEeeCChhHHhh--------ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 275 VSNKVVFTTREFGVCGQ--------MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 275 g~s~IiiTtr~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
..+|++..+..+... .+....+.+++|+.+++++++...+..
T Consensus 157 --~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~ 206 (234)
T PF01637_consen 157 --VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKE 206 (234)
T ss_dssp --EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHC
T ss_pred --ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHH
Confidence 355566555544433 222345899999999999999997643
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=2e-09 Score=95.08 Aligned_cols=146 Identities=17% Similarity=0.299 Sum_probs=90.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
.+.+.+.|+|++|+|||||++.+++.. . ...+ ..+|+ +....+..+++..++..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~-~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-D-QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-C-CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 446689999999999999999999887 2 1221 22333 33345677888899988876542 2233333333333
Q ss_pred H-----hcCCcEEEEEecCCCcc--ccccccCC--C-CCCCCCCcEEEEeeCChhHHhhcc----------CCceeecCC
Q 045709 243 I-----LSKKKFVLLLDDIWELV--DLDQVGLP--I-PSRTSVSNKVVFTTREFGVCGQME----------AHRSFKVEC 302 (337)
Q Consensus 243 ~-----l~~k~~LlVlDdv~~~~--~~~~l~~~--l-~~~~~g~s~IiiTtr~~~v~~~~~----------~~~~~~l~~ 302 (337)
. ..+++.+||+||++... .++.+... + ...... ..|++|... .....+. ....+++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~-~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL-LQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCe-EEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCC
Confidence 2 26788999999998753 34433211 1 111122 345565543 2221111 134678999
Q ss_pred CCHHHHHHHHhHhhC
Q 045709 303 LRYDDAWKLFEQKVG 317 (337)
Q Consensus 303 L~~~ea~~Lf~~~~~ 317 (337)
|+.+|..+++..++.
T Consensus 192 l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 192 LDREETREYIEHRLE 206 (269)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988774
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=99.08 E-value=6.9e-10 Score=95.50 Aligned_cols=130 Identities=10% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
..+.+.|+|++|+|||+|++.+++... .....+.|++..... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999873 223345666653110 0000 11111
Q ss_pred hcCCcEEEEEecCCCc---ccccc-ccCCCCCC-CCCCcEEEE-eeCC---------hhHHhhccCCceeecCCCCHHHH
Q 045709 244 LSKKKFVLLLDDIWEL---VDLDQ-VGLPIPSR-TSVSNKVVF-TTRE---------FGVCGQMEAHRSFKVECLRYDDA 308 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~-~~g~s~Iii-Ttr~---------~~v~~~~~~~~~~~l~~L~~~ea 308 (337)
+. +.-+|+|||+|.. ..|.. +...+... ..+ +.+|+ |+.. +.+.+.+.....+++++++.++.
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~-~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~ 166 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQG-KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK 166 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence 21 3349999999874 33432 22212211 234 55554 4543 35566666677899999999999
Q ss_pred HHHHhHhhCCCCCCCC
Q 045709 309 WKLFEQKVGADTLDSH 324 (337)
Q Consensus 309 ~~Lf~~~~~~~~~~~~ 324 (337)
+++|++.+.......+
T Consensus 167 ~~iL~~~a~~~~l~l~ 182 (229)
T PRK06893 167 IIVLQRNAYQRGIELS 182 (229)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999875443333
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.07 E-value=7.4e-10 Score=98.89 Aligned_cols=140 Identities=24% Similarity=0.318 Sum_probs=90.6
Q ss_pred cccchhhH---HHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 146 VVGLQLTF---DRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 146 ~vGr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
+||.+..+ .-|.+++..+...-.-+||++|+||||||+.+.... ...|.. ++-..+-.+
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvk---------- 87 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVK---------- 87 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHH----------
Confidence 45544433 234455666788888899999999999999998876 455542 221111111
Q ss_pred CCCccccCCCHHHHHHHHH-HHhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE--eeCChhHH---hhccC
Q 045709 223 LFNESWKNKSMQEKAQEIF-KILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF--TTREFGVC---GQMEA 294 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii--Ttr~~~v~---~~~~~ 294 (337)
+..+..+.-+ ....+++.+|++|+|+.. .+.+.+ +|...+| .-|+| ||.|+... ...+.
T Consensus 88 ---------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G-~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 88 ---------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENG-TIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred ---------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCC-eEEEEeccCCCCCeeecHHHhhh
Confidence 1222222222 223488999999999754 344444 5666677 66666 77776642 22345
Q ss_pred CceeecCCCCHHHHHHHHhHhh
Q 045709 295 HRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..++.+++|+.++-.+++.+.+
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHH
Confidence 5789999999999999999844
No 11
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-08 Score=91.48 Aligned_cols=169 Identities=16% Similarity=0.236 Sum_probs=117.8
Q ss_pred CCccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
|+.+.+|+.+++++...|.. ..+..+.|+|.+|+|||+.++.+............ ++++++....+...++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 34589999999999888754 34455999999999999999999999832222222 89999999999999999999
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccccc--cccCCCCCC-CCCCcEEE--EeeCChhH---
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVDLD--QVGLPIPSR-TSVSNKVV--FTTREFGV--- 288 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~--~l~~~l~~~-~~g~s~Ii--iTtr~~~v--- 288 (337)
++++... ....+..+..+.+.+.+. ++.+++|||+++....-. -+...+... ... ++|+ ..+-+..+
T Consensus 95 ~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~-~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 95 NKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENK-VKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccc-eeEEEEEEeccHHHHHH
Confidence 9997322 245666777778887774 578899999998753321 111111111 112 4443 34443333
Q ss_pred -----HhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 -----CGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 -----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.+.++. ..+..+|.+.+|-.+.+..++
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHH
Confidence 222222 348899999999999999987
No 12
>PF13173 AAA_14: AAA domain
Probab=99.02 E-value=8.6e-10 Score=86.05 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=82.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
.+++.|.|+.|+|||||+++++.+. . ....++|++........... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 5789999999999999999999887 2 44567777766543211100 00 223333333
Q ss_pred cCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhc------cCCceeecCCCCHHHH
Q 045709 245 SKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQM------EAHRSFKVECLRYDDA 308 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~------~~~~~~~l~~L~~~ea 308 (337)
..+..+|+||++....+|......+.+.... .+|++|+.+......- +....++|.||+-.|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~-~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPN-IKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccC-ceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3477899999999998888876666665545 7999999987665321 1224679999998773
No 13
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=8e-09 Score=101.06 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=116.0
Q ss_pred CCccccchhhHHHHHHHHhc----C-CCeEEEEEecCCCcHHHHHHHHHHhhccC--CCCC--cEEEEEEecCccCHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME----E-HAGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHF--DFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~----~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~~~~~~~~~~ 213 (337)
|+.+.||++++++|...|.. . ...++.|+|++|+|||+.++.+...+... .... -.++++++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56789999999999888754 2 33567899999999999999998876311 1111 24678888777788889
Q ss_pred HHHHHHHhCCCCccccCCCHHHHHHHHHHHhc---CCcEEEEEecCCCccc-----cccccCCCCCCCCCCcEEEE--ee
Q 045709 214 QESIAKKIGLFNESWKNKSMQEKAQEIFKILS---KKKFVLLLDDIWELVD-----LDQVGLPIPSRTSVSNKVVF--TT 283 (337)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~g~s~Iii--Tt 283 (337)
+..|..++....+ ....+..+....+...+. +...+||||+++.... +-.+... +. ..+ ++|++ +|
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~-SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KIN-SKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccC-CeEEEEEec
Confidence 9999988854332 133344455666665552 2345899999986531 1111111 11 123 45444 33
Q ss_pred CChh--------HHhhccCCceeecCCCCHHHHHHHHhHhhCCC-CCCCCCChHHHHHHh
Q 045709 284 REFG--------VCGQMEAHRSFKVECLRYDDAWKLFEQKVGAD-TLDSHPDIPELAETL 334 (337)
Q Consensus 284 r~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~l~~i~~~i 334 (337)
.... +...++ ...+.++|++.++-.+++..++... ..-.+..++-+|+.+
T Consensus 910 NdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred Cchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3212 222222 2347789999999999999998642 212233345555543
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=7.2e-09 Score=93.31 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
.+|+|+++.++.|..++.. .....+.++|++|+|||+||+.+++.. ...+. .+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~---~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLK---ITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEE---EeccchhcCchh-HHHHH
Confidence 3589999999999888863 345568899999999999999999887 22221 122211111222 22223
Q ss_pred HHhCCCC----ccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhcc-
Q 045709 219 KKIGLFN----ESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQME- 293 (337)
Q Consensus 219 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~- 293 (337)
..++... +..+..+ ......+...+.+.+..+|+++..+...+.. .+| +. +-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~-~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PF-TLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---Ce-EEEEecCCccccCHHHHh
Confidence 3332211 0001111 1223445566666666677776655443322 222 23 56667777654433221
Q ss_pred -CCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 294 -AHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 294 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
....+++++++.++..+++.+.+....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~ 176 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLN 176 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 134679999999999999998886433
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=2.4e-08 Score=103.04 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=103.2
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-ccCHHHHHHHHHH
Q 045709 141 PLPPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQESIAK 219 (337)
Q Consensus 141 ~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~ 219 (337)
+.++.++-|....+.+... ...+++.|+|++|.||||++..+.... . .++|+++.. +.++..+...++.
T Consensus 11 ~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 3345678888666655321 357899999999999999999987543 2 589999864 4466667777777
Q ss_pred HhCCCCcc-----------ccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccc--cc-cccCCCCCCCCCCcEEEEee
Q 045709 220 KIGLFNES-----------WKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVD--LD-QVGLPIPSRTSVSNKVVFTT 283 (337)
Q Consensus 220 ~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~l~~~l~~~~~g~s~IiiTt 283 (337)
.+...... ....+.......+...+. +.+++|||||++...+ .. .+...+.....+ .++||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~-~~lv~~s 159 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPEN-LTLVVLS 159 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCC-eEEEEEe
Confidence 76421110 011222334444444443 6799999999976532 11 222112222334 7888999
Q ss_pred CChhHHh--hc-cCCceeecC----CCCHHHHHHHHhHhhCC
Q 045709 284 REFGVCG--QM-EAHRSFKVE----CLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 284 r~~~v~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~ 318 (337)
|...-.. .+ -......+. +|+.+|+.+||....+.
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~ 201 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS 201 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC
Confidence 9742111 11 122344555 99999999999877654
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.93 E-value=1.2e-08 Score=80.80 Aligned_cols=123 Identities=23% Similarity=0.125 Sum_probs=73.3
Q ss_pred ccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc
Q 045709 147 VGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE 226 (337)
Q Consensus 147 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 226 (337)
+|++..+..+...+.....+.+.|+|.+|+|||++++.+++... .....++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888899998888776678899999999999999999999872 223345666655433222111110000
Q ss_pred cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-----cccccccCCCCCC---CCCCcEEEEeeCChh
Q 045709 227 SWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL-----VDLDQVGLPIPSR---TSVSNKVVFTTREFG 287 (337)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~---~~g~s~IiiTtr~~~ 287 (337)
............++.+|++||++.. ..+..+...+... ..+ ..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCC-eEEEEecCccc
Confidence 0011112223456789999999853 1222222222111 245 78888888554
No 17
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.92 E-value=2e-08 Score=88.64 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=90.6
Q ss_pred HHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHH
Q 045709 156 VWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQE 235 (337)
Q Consensus 156 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 235 (337)
|.+++..+..+.+.+||++|+||||||+.+.... +.+- ..||..|-...-..-.+.|.++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq~------------ 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQN------------ 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHHH------------
Confidence 3444556788999999999999999999998876 2221 5566666543333333334333211
Q ss_pred HHHHHHHHhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE--eeCChhH---HhhccCCceeecCCCCHHHH
Q 045709 236 KAQEIFKILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF--TTREFGV---CGQMEAHRSFKVECLRYDDA 308 (337)
Q Consensus 236 ~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii--Ttr~~~v---~~~~~~~~~~~l~~L~~~ea 308 (337)
...+.+++.+|.+|+|..- .+.+.+ +|.-.+| .-++| ||.+.+. +..++...++-|++|..++.
T Consensus 216 -----~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G-~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 216 -----EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENG-DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred -----HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccC-ceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 1234578899999999743 333333 6777778 66666 8887765 23344557899999999999
Q ss_pred HHHHhHhh
Q 045709 309 WKLFEQKV 316 (337)
Q Consensus 309 ~~Lf~~~~ 316 (337)
..++.+..
T Consensus 287 ~~iL~rai 294 (554)
T KOG2028|consen 287 VTILMRAI 294 (554)
T ss_pred HHHHHHHH
Confidence 99998743
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.90 E-value=5.4e-09 Score=89.87 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=85.5
Q ss_pred chhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc
Q 045709 149 LQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW 228 (337)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 228 (337)
....++.+.+++.......+.|+|.+|+|||+||+.+++... ......+|++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455677777776666678899999999999999999998872 2333455665543211 00
Q ss_pred cCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc---cc-ccccCCCCC-CCCCCcEEEEeeCChh---------HHhhccC
Q 045709 229 KNKSMQEKAQEIFKILSKKKFVLLLDDIWELV---DL-DQVGLPIPS-RTSVSNKVVFTTREFG---------VCGQMEA 294 (337)
Q Consensus 229 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~g~s~IiiTtr~~~---------v~~~~~~ 294 (337)
..+...+.+ .-+|||||++... .| ..+...+.. ...+ ..+|+||+... +...+..
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011111222 3489999998653 22 223222221 1234 57888887532 2223333
Q ss_pred CceeecCCCCHHHHHHHHhHhhC
Q 045709 295 HRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
...+.+++++.++...++...+.
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999987653
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.89 E-value=5.6e-09 Score=81.61 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=79.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC--CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
+.+.+.|+|.+|+|||++++.+....... ...-..++|++++...+...+...|+..++..... ..+...+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35789999999999999999999877210 00145677999988889999999999999876532 356777778888
Q ss_pred HHhcCCc-EEEEEecCCCc-c--ccccccCCCCCCCCCCcEEEEeeCC
Q 045709 242 KILSKKK-FVLLLDDIWEL-V--DLDQVGLPIPSRTSVSNKVVFTTRE 285 (337)
Q Consensus 242 ~~l~~k~-~LlVlDdv~~~-~--~~~~l~~~l~~~~~g~s~IiiTtr~ 285 (337)
+.+...+ .+||+||++.. . .++.+.. +.+ ..+ .++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~-~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESN-IKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCB-EEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCC-CeEEEEECh
Confidence 8886554 59999999875 2 2233322 222 445 778877664
No 20
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.86 E-value=2e-08 Score=91.34 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=90.7
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
.+|+|+++.++.+..++.. .....+.|+|++|+|||+||+.+++.. ...+. ++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~---~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNIR---ITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeE---EEeccc-ccChHHHHHHH
Confidence 5689999999998877752 345678899999999999999999987 22221 122211 11112223333
Q ss_pred HHhCCCC----ccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhcc-
Q 045709 219 KKIGLFN----ESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQME- 293 (337)
Q Consensus 219 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~- 293 (337)
..+.... +..+..+ ....+.+...+.+.+..+++|+..+...+. ..+| +. +-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~-~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PF-TLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---Cc-eEEeecCCcccCCHHHHH
Confidence 3332111 0000001 112223444455555555555543332221 1122 23 55666777554433221
Q ss_pred -CCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 294 -AHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 294 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
....+.+++++.++..+++.+.+....
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 134689999999999999999886554
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.83 E-value=2.2e-08 Score=93.81 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDR---VWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
.+++|++..+.. |..++.....+.+.++|++|+||||||+.+++.. ...| +.++....-..-+..++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 458898887665 7777777777788999999999999999999876 3333 22221111111111111
Q ss_pred hCCCCccccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEE--eeCChhHH---hhc
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKI-LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVF--TTREFGVC---GQM 292 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~Iii--Ttr~~~v~---~~~ 292 (337)
...... ..+++.+|+||+++... ..+.+...+. .+ ..++| ||.+.... ...
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~-~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DG-TITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cC-cEEEEEeCCCChhhhccHHHh
Confidence 111111 14578899999998653 3344433332 34 44544 34443221 112
Q ss_pred cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 293 EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+....+.+.+|+.++.+.+|.+.+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHH
Confidence 2336789999999999999998653
No 22
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.83 E-value=1.2e-08 Score=84.57 Aligned_cols=44 Identities=30% Similarity=0.383 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHh---cCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCLM---EEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|+||+++++++...|. ....+.+.|+|.+|+|||+|++.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999983 2467899999999999999999999888
No 23
>PRK08727 hypothetical protein; Validated
Probab=98.80 E-value=5.1e-08 Score=84.08 Aligned_cols=144 Identities=10% Similarity=0.080 Sum_probs=84.6
Q ss_pred cccc-chhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC
Q 045709 145 TVVG-LQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL 223 (337)
Q Consensus 145 ~~vG-r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 223 (337)
+|++ -...+..+.....+.....+.|+|.+|+|||+|+..+++... .....+.|++... ....+..
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~~---- 86 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLRD---- 86 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHHH----
Confidence 3444 334444444433334446799999999999999999998873 2223556665332 1111110
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc---ccccc-cCCCCC-CCCCCcEEEEeeCCh---------hHH
Q 045709 224 FNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV---DLDQV-GLPIPS-RTSVSNKVVFTTREF---------GVC 289 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l-~~~l~~-~~~g~s~IiiTtr~~---------~v~ 289 (337)
..+.+ .+.-+|||||++... .|... ...+.. ..++ ..||+||+.. .+.
T Consensus 87 ----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 87 ----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHH
Confidence 11112 233599999997542 22221 111111 1234 6799999853 223
Q ss_pred hhccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 290 GQMEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 290 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+.+.....+++++++.++-..++.+++...
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 344445688999999999999999977543
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=5.8e-08 Score=88.65 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc-EEEEEEecCccCHHHHHHHHH----
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQESIA---- 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~---- 218 (337)
.+++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+... ...+. ..++++++.... .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 45899999999999988877666788999999999999999998873 12222 234444432110 0000000
Q ss_pred --HHhCCCCccccCCCHHHHHHHHHHHh------cCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCChh-
Q 045709 219 --KKIGLFNESWKNKSMQEKAQEIFKIL------SKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREFG- 287 (337)
Q Consensus 219 --~~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~~- 287 (337)
..++.. .. ...+.....+.+.+.. .+.+-+|||||++.... ...+...+...... +++|+||.+..
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRT-CRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCC-CeEEEEeCChhh
Confidence 000000 00 0111112222222111 13445899999976532 22232222222334 67888775432
Q ss_pred HHhhc-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 288 VCGQM-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 288 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+...+ +....+.+.+++.++...++.+.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 22222 223578899999999999998876443
No 25
>PTZ00202 tuzin; Provisional
Probab=98.79 E-value=2e-07 Score=85.19 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=102.8
Q ss_pred CCCCCCccccchhhHHHHHHHHhcC---CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHH
Q 045709 139 ERPLPPTVVGLQLTFDRVWRCLMEE---HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQE 215 (337)
Q Consensus 139 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 215 (337)
.|+..+.|+||+.++..|...|.+. ..+++.|.|++|+|||||++.+.... . + ...+++.. +..+++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~--~-~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G--M-PAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C--c-eEEEECCC---CHHHHHH
Confidence 3444678999999999999988642 34699999999999999999998765 1 1 13333333 6799999
Q ss_pred HHHHHhCCCCccccCCCHHHHHHHHHHHh-----c-CCcEEEEEecCCCccccccc---cCCCCCCCCCCcEEEEeeCCh
Q 045709 216 SIAKKIGLFNESWKNKSMQEKAQEIFKIL-----S-KKKFVLLLDDIWELVDLDQV---GLPIPSRTSVSNKVVFTTREF 286 (337)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~g~s~IiiTtr~~ 286 (337)
.|+..|+... .....++.+.|.+.+ . +++.+||+-=- +...+..+ ...+.....- |+|++----+
T Consensus 328 ~LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~-ch~v~evple 401 (550)
T PTZ00202 328 SVVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRL-CHVVIEVPLE 401 (550)
T ss_pred HHHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchh-heeeeeehHh
Confidence 9999999743 222234444444333 2 66677776321 11111111 1112233344 8888766655
Q ss_pred hHHhhc---cCCceeecCCCCHHHHHHHHhHhh
Q 045709 287 GVCGQM---EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 287 ~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.+.... ..-..|.+++++.++|..+-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 442211 122467899999999998877653
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.4e-07 Score=91.89 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=96.1
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+.+.+.- ...+.. ..+........|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC-e~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC-ETGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-ccCCCC-------CCCcccHHHHHHhcCCC
Confidence 458999999999999998765 456689999999999999999887721 111110 01111111222211000
Q ss_pred CC---CccccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCChh-HHhh-
Q 045709 223 LF---NESWKNKSMQEKAQEIFKI----LSKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREFG-VCGQ- 291 (337)
Q Consensus 223 ~~---~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~- 291 (337)
.. .+.......++..+.+... ..++.-++|||+++.... ++.++..+..-... .++|+||.+.. +...
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~-v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH-VKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC-eEEEEEECChhhccchh
Confidence 00 0000111122222222211 124556899999987643 55554444332334 78887777643 3222
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
.+....+++.+++.++..+.+.+.+....
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 22336789999999999999988775444
No 27
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=1e-07 Score=82.38 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=86.0
Q ss_pred cccc-hhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC
Q 045709 146 VVGL-QLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF 224 (337)
Q Consensus 146 ~vGr-~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 224 (337)
++|. ...+..+.++........+.|+|++|+|||+|++.+++... .....+.|+++.....
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~--------------- 86 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW--------------- 86 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---------------
Confidence 3462 33445555554445557899999999999999999998772 2234556665542100
Q ss_pred CccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc---ccccccc-CCCCC-CCCCCcEEEEeeCCh---------hHHh
Q 045709 225 NESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL---VDLDQVG-LPIPS-RTSVSNKVVFTTREF---------GVCG 290 (337)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g~s~IiiTtr~~---------~v~~ 290 (337)
...+ +.+.+.. --+|+|||++.. ..|+... ..+.. ...|+.++|+||+.. .+.+
T Consensus 87 -------~~~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 -------FVPE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -------hhHH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 0011 1111111 248999999754 2333221 11111 112314799999754 3345
Q ss_pred hccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 291 QMEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
.+....++++++++.++-.+++.+++...
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 55566899999999999999998877443
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.75 E-value=1.6e-07 Score=86.59 Aligned_cols=164 Identities=20% Similarity=0.241 Sum_probs=95.4
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|+++.++.|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...|- .+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~-----~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFI-----RVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEE-----ecch----
Confidence 4578999999999887632 124568999999999999999999987 33332 2211
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc----------------ccccccCCCC--C
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV----------------DLDQVGLPIP--S 271 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~ 271 (337)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0111222222222 3467899999997541 0111211111 1
Q ss_pred CCCCCcEEEEeeCChhHH-----hhccCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 272 RTSVSNKVVFTTREFGVC-----GQMEAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
...+ ..||.||...... ........+.++..+.++..++|..++.......+-++..+++
T Consensus 258 ~~~~-v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 258 PRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred CCCC-EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 1234 6788888754321 1111245789999999999999998876544233345555554
No 29
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.74 E-value=3.1e-07 Score=89.86 Aligned_cols=172 Identities=15% Similarity=0.096 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC---cEEEEEEecC---ccCHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF---DFVIWVVVSR---DLQLEKIQESI 217 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~~i 217 (337)
+.++|++..+..+...+.......+.|+|++|+||||||+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4589999999998888866666789999999999999999998766 222222 1223443322 11222221111
Q ss_pred ---------------HHHhCCCC----------------ccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--ccccc
Q 045709 218 ---------------AKKIGLFN----------------ESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQ 264 (337)
Q Consensus 218 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 264 (337)
+...+... +..... ....+..+...+.+++++++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111110 000111 123566788888888888887766654 34666
Q ss_pred ccCCCCCCCCCCcEEEE--eeCChhH-Hhhc-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 265 VGLPIPSRTSVSNKVVF--TTREFGV-CGQM-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 265 l~~~l~~~~~g~s~Iii--Ttr~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+...+....+. ..+++ ||++... ...+ +....+.+.+++.+|.+.++.+.+..
T Consensus 312 ik~~~~~~~~~-~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 312 IKKLFEEGAPA-DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred hhhhcccCccc-eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 66556555444 44555 5664332 1111 12246789999999999999998754
No 30
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.72 E-value=3.5e-08 Score=85.38 Aligned_cols=93 Identities=22% Similarity=0.214 Sum_probs=63.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc--cCHHHHHHHHHHHhCCCCccccCCC------HH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQESIAKKIGLFNESWKNKS------MQ 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~ 234 (337)
.....++|+|++|+|||||++.+++... ..+|+.++|+.+... .++.++++.+...+-...- .... ..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~ 89 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAE 89 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHH
Confidence 3567899999999999999999999883 348999999997766 7889999888332211110 1111 11
Q ss_pred HHHHHHHHH-hcCCcEEEEEecCCCc
Q 045709 235 EKAQEIFKI-LSKKKFVLLLDDIWEL 259 (337)
Q Consensus 235 ~~~~~l~~~-l~~k~~LlVlDdv~~~ 259 (337)
........+ -.+++.+|++|++...
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 112222222 2478999999998743
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.68 E-value=1.7e-07 Score=84.89 Aligned_cols=158 Identities=12% Similarity=0.149 Sum_probs=91.4
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc-EEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.++.+..|..++..++.+.+.++|++|+||||+|..+++... ...|. .++-++.+...... ..+.++..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 35789999888888888777667788999999999999999998862 12222 12222222222211 1222221111
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cCCcee
Q 045709 223 LFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EAHRSF 298 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~~~~~ 298 (337)
.... . .-.++.-+++||+++.... ...+...+...... +++++++... .+...+ +....+
T Consensus 90 ~~~~---~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~-t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV---T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT-TRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc---c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC-ceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0 0013466999999987532 22232222222234 6777766542 221111 123578
Q ss_pred ecCCCCHHHHHHHHhHhhCCCC
Q 045709 299 KVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
++++++.++....+...+....
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999988775433
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.67 E-value=4.1e-07 Score=82.40 Aligned_cols=156 Identities=11% Similarity=0.147 Sum_probs=90.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe--cCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV--SRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l 221 (337)
.+++|++..++.+..++.....+.+.++|.+|+||||+++.+.+... ...+. ..++.+ +....... ....+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~-~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDV-IRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHH-HHHHHHHH
Confidence 45899999999999998776666789999999999999999998872 12221 112222 22211111 11111111
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cCCce
Q 045709 222 GLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EAHRS 297 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~~~~ 297 (337)
....+ .....+-++++|+++... ....+...+...... +.+|+++... .+...+ .....
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~-~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQN-TRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCC-CeEEEEeCCccccchhHHHHhhe
Confidence 10000 001235689999987652 233333333333344 6777776432 221111 12346
Q ss_pred eecCCCCHHHHHHHHhHhhCCCC
Q 045709 298 FKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 298 ~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+++++++.++....+...+....
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~ 178 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG 178 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999988775433
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=4.1e-07 Score=86.74 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|.+++..+.. +.+.++|++|+||||+|+.+++... -.+.+...+|.|.+.. .+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~--------~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCL--------AVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhH--------HHhcCCC
Confidence 4579999999999988877654 4569999999999999999988872 1122333344432210 0100000
Q ss_pred CCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... ........+. .+.+.+.+ .+++-++|||+++.. ..++.+...+...... +.+|++|.. ..+...
T Consensus 85 ~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~-t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 85 PDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH-VIFILATTEPEKMPPT 162 (504)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCC-EEEEEEcCChhhCChH
Confidence 000 0001111222 22233322 345679999999865 3355554444433334 555555543 333222
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+ +....+++.+++.++....+.+.+-..+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 2 2346789999999999999998875443
No 34
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.65 E-value=1.6e-07 Score=92.92 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=85.6
Q ss_pred CccccchhhHH---HHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFD---RVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
.+|+|++..+. .+.+.+.....+.+.++|++|+||||||+.+++.. ..+|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH---------
Confidence 45789888774 56666666777788999999999999999999876 34442 111110 0000
Q ss_pred hCCCCccccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE--eeCChh--HHhh-
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKIL--SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF--TTREFG--VCGQ- 291 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii--Ttr~~~--v~~~- 291 (337)
+..+........+ .+++.+|+|||++.. ..++.+...+ ..+ +.++| ||.+.. +...
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g-~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENG-TITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCc-eEEEEEecCCChHhhhhhHh
Confidence 0111112222222 246779999999754 3344443322 235 55555 344432 2111
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+....+.+++|+.++...++.+.+.
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHH
Confidence 12245789999999999999988764
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=7.7e-07 Score=81.96 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..++.+.+.+..++. +.+.++|++|+||||+|+.+++... ...... ..+.........+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4589999999999998877654 5678999999999999999998772 111110 000000011111111100
Q ss_pred CCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~ 291 (337)
... +.......++ .+.+.+.+ .++.-++|+|+++... .++.+...+...... .++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~-~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH-IKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEcCChHhhhHH
Confidence 000 0000011111 22222222 2345699999998764 344454444333344 6777766543 33322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+ +....+++.+++.++..+.+...+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~ 192 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILI 192 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 2 2346789999999999988887664
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=3.4e-07 Score=90.80 Aligned_cols=164 Identities=14% Similarity=0.119 Sum_probs=91.8
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCCCcE-EEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
.+++|.+..+..|.+++..++.. .+.++|+.|+||||+|+.+++.... ...... .|.. ......+....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~--------C~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGV--------CSSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCC--------chHHHHHhcCC
Confidence 45899999999999998876654 4589999999999999999988721 111100 0000 00111111100
Q ss_pred CCC---CccccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHh
Q 045709 222 GLF---NESWKNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCG 290 (337)
Q Consensus 222 ~~~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~ 290 (337)
... .+.......+. ++.+.+. ..++.-++|||+++.. ..++.++..+-.-... .++|++|.+ ..+..
T Consensus 87 ~~DviEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~-vrFILaTTe~~kLl~ 164 (944)
T PRK14949 87 FVDLIEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH-VKFLLATTDPQKLPV 164 (944)
T ss_pred CceEEEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC-eEEEEECCCchhchH
Confidence 000 00000011111 1122221 2356779999999865 3344444333322233 566655544 44432
Q ss_pred h-ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 291 Q-MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 291 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
. ......|++.+|+.++....+.+.+..
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 2 223468999999999999999887643
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=3e-07 Score=87.87 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=92.5
Q ss_pred CccccchhhHHHHHHHHhcC----CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEE----HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
.+++|+++.++.|..|+... ..+.+.|+|++|+||||+|+.+++.. . ++ .+-++.+...+.. ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CC-EEEEcccccccHH-HHHHHHH
Confidence 45899999999999988642 26789999999999999999999987 1 32 2333444332222 2223332
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc------cccccCCCCCCCCCCcEEEEeeCChh-HHh-h
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD------LDQVGLPIPSRTSVSNKVVFTTREFG-VCG-Q 291 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~-~ 291 (337)
...... .....++-+||||+++.... +..+...+.. .+ +.||+|+.+.. ... .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~-~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AK-QPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CC-CCEEEeccCccccchhh
Confidence 221110 00113677999999987532 3333333321 23 45666664422 111 1
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+ .....+.+.+++.++....+.+.+....
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg 177 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEG 177 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 2346789999999999999888775443
No 38
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.62 E-value=5.4e-07 Score=79.22 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=81.4
Q ss_pred ccccchhhHHHHHHHHh---------------cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC
Q 045709 145 TVVGLQLTFDRVWRCLM---------------EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 209 (337)
.++|.++.+..|.+... .+....+.++|++|+||||+|+.+++.... .+......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHH--
Confidence 36888777666543321 013456889999999999999999887621 111111122333221
Q ss_pred HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc----------ccccccCCCCCCCCCCcEE
Q 045709 210 LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV----------DLDQVGLPIPSRTSVSNKV 279 (337)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~g~s~I 279 (337)
++. ... ...........+ +.. ...+|+||+++... ..+.+...+...... ..+
T Consensus 84 --~l~----~~~-------~g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~-~~v 146 (261)
T TIGR02881 84 --DLV----GEY-------IGHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE-FVL 146 (261)
T ss_pred --Hhh----hhh-------ccchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC-EEE
Confidence 111 111 011111111222 221 23489999997532 223333333333233 455
Q ss_pred EEeeCChhHHh------hc-c-CCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 280 VFTTREFGVCG------QM-E-AHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 280 iiTtr~~~v~~------~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
|+++...+... .+ + ....+++++++.++-.+++.+.+....
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 55654433211 11 1 134689999999999999998875443
No 39
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=9.6e-07 Score=85.16 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|.+++..++ .+.+.++|+.|+||||+|+.+++... -..... . ...........+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~------~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT------S-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC------C-CCCccCHHHHHHhcCCC
Confidence 458999999999999998765 46779999999999999999988762 111110 0 00111111111111000
Q ss_pred CCC---ccccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHH-h
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVC-G 290 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~-~ 290 (337)
..- +.......++.. .+... ..++.-++|||+++... ....+...+.....+ .++|++|.+. .+. .
T Consensus 87 pDviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~-v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH-VKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC-cEEEEEECChHhhhHH
Confidence 000 000011222221 22221 13566699999998653 344444333333344 6777777653 222 1
Q ss_pred hccCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 291 QMEAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
..+....+++.+|+.++....+.+.+....
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 123346889999999999999988775443
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=8.2e-07 Score=85.46 Aligned_cols=171 Identities=15% Similarity=0.117 Sum_probs=93.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCC-CcEEEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-FDFVIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
.++||.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+.+.-.... -.... +...........|...-
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 4589999999999999987764 466899999999999999998877210000 00000 00011111111111100
Q ss_pred CCCC---ccccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeC-ChhHHhh
Q 045709 222 GLFN---ESWKNKSMQEKAQEIFKI----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTR-EFGVCGQ 291 (337)
Q Consensus 222 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr-~~~v~~~ 291 (337)
.... +.......++..+.+... ..++.-++|||+++.. ..++.++..+..-... +.+|++|. ...+...
T Consensus 92 hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~-v~FILaTtep~kLlpT 170 (700)
T PRK12323 92 FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH-VKFILATTDPQKIPVT 170 (700)
T ss_pred CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC-ceEEEEeCChHhhhhH
Confidence 0000 000112233322222221 1355669999999865 3344554444332234 56555554 4444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ +....+.+.+++.++..+.+.+.+...
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHc
Confidence 2 223678999999999999988776443
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.1e-06 Score=84.23 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=90.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCC------------------CCcEEEEEEe
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPN------------------HFDFVIWVVV 204 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 204 (337)
.+++|.+..+..|.+.+..++. +.+.++|+.|+||||+|+.+++...-... .|...++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4589999999999999977654 45789999999999999999986621000 1111222211
Q ss_pred cCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH-hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEE
Q 045709 205 SRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI-LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVF 281 (337)
Q Consensus 205 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~Iii 281 (337)
.....+. +..++...+... ..+++-++|+|+++... .++.+...+...... +.+|+
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~-v~fIL 154 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY-VKFIL 154 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC-ceEEE
Confidence 1111111 111122222211 23566799999997653 344454444433334 66665
Q ss_pred eeC-ChhHHhh-ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 282 TTR-EFGVCGQ-MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 282 Ttr-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+|. ...+... .+....+++.+++.++....+.+.+.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence 444 3333322 22346889999999998888887553
No 42
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1e-06 Score=83.34 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=89.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|...+.++.. +.+.++|++|+||||+|+.+++.... ..... + .+.........+.....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~-~~~~~---~----~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC-ENRKG---V----EPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CCCcccHHHHHHhcCCC
Confidence 4589999888888888877665 45889999999999999999887621 11000 0 00000001111100000
Q ss_pred CCC---ccccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... ........+. .+.+.+. ..+++-++|+|+++.. ...+.+...+...... ..+|++|.+ ..+...
T Consensus 86 ~dv~el~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~-vv~Ilattn~~kl~~~ 163 (472)
T PRK14962 86 MDVIELDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH-VVFVLATTNLEKVPPT 163 (472)
T ss_pred CccEEEeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc-EEEEEEeCChHhhhHH
Confidence 000 0000111111 1122222 2245669999999754 2344444444332223 455545443 333332
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+ +....+.+.+++.++....+.+.+..
T Consensus 164 L~SR~~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred HhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence 2 23467899999999999998887743
No 43
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.55 E-value=3.1e-07 Score=83.26 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=61.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc--CHHHHHHHHHHHhCCCCccccCCCHH------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL--QLEKIQESIAKKIGLFNESWKNKSMQ------ 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------ 234 (337)
......+|+|++|+|||||++.+++... ..+|+.++|+.+.+.. .+.++++.+...+-.+. ++.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~~~~~~~a~ 242 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPAERHVQVAE 242 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCHHHHHHHHH
Confidence 3567889999999999999999999983 3489999999998876 67777777763221111 1111111
Q ss_pred HHHHHHHHH-hcCCcEEEEEecCCC
Q 045709 235 EKAQEIFKI-LSKKKFVLLLDDIWE 258 (337)
Q Consensus 235 ~~~~~l~~~-l~~k~~LlVlDdv~~ 258 (337)
........+ ..++..+|++|++..
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111111111 368999999999864
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=98.55 E-value=6.5e-07 Score=77.25 Aligned_cols=124 Identities=16% Similarity=0.302 Sum_probs=76.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|.+|+|||.|++.+++... ..-..++|++... +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 2224566765432 1110 01122233
Q ss_pred cCCcEEEEEecCCCc---ccccc-ccCCCCC-CCCCCcEEEEeeCChh---------HHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWEL---VDLDQ-VGLPIPS-RTSVSNKVVFTTREFG---------VCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~g~s~IiiTtr~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
.+-. +||+||+... ..|.. +...+.. ..+| ..+|+||+... +.+.+....++++++++.++-..
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 2222 7889999743 23433 2222211 1235 68888887533 23333445678999999999999
Q ss_pred HHhHhhCCC
Q 045709 311 LFEQKVGAD 319 (337)
Q Consensus 311 Lf~~~~~~~ 319 (337)
++++++...
T Consensus 174 il~~ka~~~ 182 (234)
T PRK05642 174 ALQLRASRR 182 (234)
T ss_pred HHHHHHHHc
Confidence 999776443
No 45
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.53 E-value=2.9e-06 Score=78.79 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|+++.+++|.+.+.. ...+-|.++|++|+|||++|+.+++.. ...| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~-----i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE-----EEeeh----
Confidence 4578999999998876632 235668999999999999999999887 3332 22211
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc----------c------cccccCCCC--C
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV----------D------LDQVGLPIP--S 271 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~l~--~ 271 (337)
..+. .... .. .......+.... ...+.+|+|||++... + +..+...+. .
T Consensus 199 ~~l~----~~~~-------g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKFI-------GE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhhc-------cc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 11 112222233322 3467899999997541 0 111111111 1
Q ss_pred CCCCCcEEEEeeCChhHHh-h-c---cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 272 RTSVSNKVVFTTREFGVCG-Q-M---EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
...+ ..||.||....... . . .....+.+++.+.++-.++|+.++........-++..+++.
T Consensus 267 ~~~~-v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~ 332 (389)
T PRK03992 267 PRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAEL 332 (389)
T ss_pred CCCC-EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHH
Confidence 1123 56777776543321 1 1 12357899999999999999988765443333456666543
No 46
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.53 E-value=9.4e-07 Score=89.53 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=90.5
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC---CCCcEEEE-EEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIW-VVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~~~~~~~~~~~~~i~~ 219 (337)
..++||++++.+++..|......-+.++|.+|+||||+|+.++....... .-.+..+| +..+. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----Q- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----h-
Confidence 45899999999999998877677778999999999999999998872110 01112222 22211 0 0
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCcc-------ccc--cccCCCCCCCCCCcEEEEeeCChhH
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKIL--SKKKFVLLLDDIWELV-------DLD--QVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
.... .....+...+.+...+ .+++.+|++|+++... ..+ .+.. |...+|.-++|-||...+.
T Consensus 256 --ag~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk--p~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 256 --AGAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK--PALARGELRTIAATTWAEY 328 (852)
T ss_pred --cccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhh--HHhhCCCeEEEEecCHHHH
Confidence 0000 0111222333333322 2468999999997642 111 1222 2223443566666664332
Q ss_pred Hhh-------ccCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CGQ-------MEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
... ......+.+++++.++..++|....
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 111 1123589999999999999975443
No 47
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.52 E-value=3e-06 Score=82.79 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=108.4
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHH
Q 045709 140 RPLPPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIA 218 (337)
Q Consensus 140 ~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 218 (337)
|+.+...+-|....+.+.+. .+.+.+.|..+.|.|||||+..+... ...-..+.|.+++.. .++..++..++
T Consensus 15 P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHHHHHHHH
Confidence 33345567777655554322 47899999999999999999999873 345567999998754 56788888888
Q ss_pred HHhCCCCccc-----------cCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccc--cc-cccCCCCCCCCCCcEEEEe
Q 045709 219 KKIGLFNESW-----------KNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVD--LD-QVGLPIPSRTSVSNKVVFT 282 (337)
Q Consensus 219 ~~l~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~l~~~l~~~~~g~s~IiiT 282 (337)
..++...+.. ...+...+...+..-+. .++.+|||||..-..+ +. .+...+.....+ -..|+|
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~-l~lvv~ 166 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPEN-LTLVVT 166 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCC-eEEEEE
Confidence 8886432211 12234445555555443 4689999999875422 11 122222333345 899999
Q ss_pred eCChhHHhhcc---CCceeec----CCCCHHHHHHHHhHhhCC
Q 045709 283 TREFGVCGQME---AHRSFKV----ECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 283 tr~~~v~~~~~---~~~~~~l----~~L~~~ea~~Lf~~~~~~ 318 (337)
||+..-..... .+..+++ -.|+.+|+-++|..+.+.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l 209 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL 209 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC
Confidence 99865322111 1122222 367899999999887743
No 48
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.50 E-value=3.1e-06 Score=77.85 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=90.1
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCC-C------------------CCcEEEEEE
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTP-N------------------HFDFVIWVV 203 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~------------------~f~~~~wv~ 203 (337)
.+++|.+..++.|.+++..++ .+.+.++|++|+||||+|+.+........ . +++ ..+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEee
Confidence 457999999999999987765 45788999999999999999988762110 0 111 12222
Q ss_pred ecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE
Q 045709 204 VSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (337)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii 281 (337)
.+...... ..+.+...+... -..+++-++|+|+++.. .....+...+...... +.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~-~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH-VVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc-eeEEE
Confidence 11111111 011111111100 01245558999998755 3344444444333334 67777
Q ss_pred eeCChh-HHhhc-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 282 TTREFG-VCGQM-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 282 Ttr~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+|.+.. +...+ +....+++.++++++....+...+-.
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 765543 22222 23357889999999999999887643
No 49
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.8e-06 Score=79.99 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcE-EEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
.+++|.+..+..|.+.+..++ .+.+.++|+.|+||||+|+.+++...- ...... ..+..+. .......+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~----~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCE----QCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCC----CChHHHHHhcCC
Confidence 357999999999988777654 467899999999999999999987721 111000 0000000 001111111100
Q ss_pred CCCC---ccccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE-eeCChhHHhh
Q 045709 222 GLFN---ESWKNKSMQEKAQEIFKI----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFGVCGQ 291 (337)
Q Consensus 222 ~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii-Ttr~~~v~~~ 291 (337)
.... +.......++....+... +.+++-++|+|+++.. ..++.+...+...... +.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~-~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH-IIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC-EEEEEEeCChHHhhHH
Confidence 0000 000111222222222111 2356779999999875 3355555444433334 56554 5555555433
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+ +....+++.+++.++....+.+.+....
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3 2345789999999999999998885444
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=2.2e-06 Score=77.48 Aligned_cols=152 Identities=12% Similarity=0.195 Sum_probs=96.3
Q ss_pred ccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEe-cCccCHHHHHHHHHH
Q 045709 145 TVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVV-SRDLQLEKIQESIAK 219 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i~~ 219 (337)
+++|.+..++.+.+++..++ .+.+.++|+.|+||||+|+.++..... ...|++...|... +....... .+++..
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 57899999999999987764 457789999999999999999886521 1345555555432 22222222 222333
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCChhHH-hh-ccCC
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFGVC-GQ-MEAH 295 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~-~~-~~~~ 295 (337)
.+.... ..+++-++|+|+++.. ..++.+...+..-..+ +.+|++|.+.+.. .. .+..
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~-t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKG-VFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCC-eEEEEEeCChHhCcHHHHhhc
Confidence 322111 1245557777776543 4566666666554456 8888888765422 11 1234
Q ss_pred ceeecCCCCHHHHHHHHhHhh
Q 045709 296 RSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+++.++++++....+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHh
Confidence 688999999999988886654
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.2e-06 Score=83.26 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCC-CCCcEEEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
.+++|.+..+..|.+++..++. +.+.++|..|+||||+|+.+.+...-.. ........ ..+........|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4589999999999999987655 5678999999999999999987762100 00000000 0111122222221100
Q ss_pred CCCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHh
Q 045709 222 GLFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCG 290 (337)
Q Consensus 222 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~ 290 (337)
.... +.......++.. .+.+.. .++.-++|||+++.. ..++.+...+..-... +++|++|.+ ..+..
T Consensus 92 h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~-~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY-LKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC-eEEEEEECCchhhhH
Confidence 0000 000111222222 222222 234458999999865 3344554444333334 666665543 33332
Q ss_pred h-ccCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 291 Q-MEAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 291 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
. .+....+++.+|+.++..+.+.+.+...+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 2 23346889999999999999988765443
No 52
>PRK09087 hypothetical protein; Validated
Probab=98.49 E-value=9.2e-07 Score=75.79 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=71.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
..+.+.|+|.+|+|||+|++.++... . ..|++.. .+...+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHh-----------------------
Confidence 45679999999999999999887654 1 1133221 111111111
Q ss_pred hcCCcEEEEEecCCCcc-ccccccCCCCC-CCCCCcEEEEeeCC---------hhHHhhccCCceeecCCCCHHHHHHHH
Q 045709 244 LSKKKFVLLLDDIWELV-DLDQVGLPIPS-RTSVSNKVVFTTRE---------FGVCGQMEAHRSFKVECLRYDDAWKLF 312 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~~-~~~~l~~~l~~-~~~g~s~IiiTtr~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf 312 (337)
+.+ -+|++||++... +-..+...+.. ...| ..+|+|++. +.+.+.+....++++++++.++-.+++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 111 278889996542 11112111111 1235 789998873 334555566789999999999999999
Q ss_pred hHhhCCCC
Q 045709 313 EQKVGADT 320 (337)
Q Consensus 313 ~~~~~~~~ 320 (337)
.+++-...
T Consensus 163 ~~~~~~~~ 170 (226)
T PRK09087 163 FKLFADRQ 170 (226)
T ss_pred HHHHHHcC
Confidence 99885443
No 53
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.49 E-value=5.9e-07 Score=76.64 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=82.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|..|+|||.|.+.+++...+ ...-..++|++ ..++...+...+... . ...++..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 456899999999999999999998732 22223466664 345555555555321 1 12344444
Q ss_pred cCCcEEEEEecCCCccc---cccc-cCCCCC-CCCCCcEEEEeeCCh---------hHHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELVD---LDQV-GLPIPS-RTSVSNKVVFTTREF---------GVCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~---~~~l-~~~l~~-~~~g~s~IiiTtr~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
. .-=+|+|||++.... |... ...+.. ...| .+||+|+... .+.+.+...-++++++++.++-..
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~ 173 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRR 173 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHH
Confidence 4 344899999976532 2211 111110 1235 6899999643 234555567789999999999999
Q ss_pred HHhHhhCCCCCCCC
Q 045709 311 LFEQKVGADTLDSH 324 (337)
Q Consensus 311 Lf~~~~~~~~~~~~ 324 (337)
++.+++.......+
T Consensus 174 il~~~a~~~~~~l~ 187 (219)
T PF00308_consen 174 ILQKKAKERGIELP 187 (219)
T ss_dssp HHHHHHHHTT--S-
T ss_pred HHHHHHHHhCCCCc
Confidence 99999865543333
No 54
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.48 E-value=8.7e-07 Score=80.76 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc--cCHHHHHHHHHHHhCCCCccccCCCHHHH----
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQESIAKKIGLFNESWKNKSMQEK---- 236 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---- 236 (337)
.....++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.+...+-...-..........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3567899999999999999999999883 347999999998865 68889988885433222110001111111
Q ss_pred HHHHHHH-hcCCcEEEEEecCCC
Q 045709 237 AQEIFKI-LSKKKFVLLLDDIWE 258 (337)
Q Consensus 237 ~~~l~~~-l~~k~~LlVlDdv~~ 258 (337)
....... -.+++.+|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1122222 258999999999874
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.5e-06 Score=81.45 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=93.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|..++.+++. +.+.++|+.|+||||+|+.+++.... ...... ..+....+. ..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~~---~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIGN---EPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccCc---cccCCCcHH----HHHHccCC
Confidence 4589999999999999987765 46899999999999999999987721 111000 001111111 11211111
Q ss_pred CCCccc---cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEee-CChhHHhh
Q 045709 223 LFNESW---KNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTT-REFGVCGQ 291 (337)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~~ 291 (337)
...-.. .....+. .+.+.+. ..++.-++|||+++.. ..++.+...+..-... ..+|++| ....+...
T Consensus 90 ~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~-viFILaTte~~kI~~T 167 (484)
T PRK14956 90 SDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH-IVFILATTEFHKIPET 167 (484)
T ss_pred ccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc-eEEEeecCChhhccHH
Confidence 000000 1111221 2222222 2355669999999865 3455554444332223 5555444 44444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ +....|.+.+++.++..+.+.+.+...
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHc
Confidence 2 233579999999999999888876543
No 56
>CHL00181 cbbX CbbX; Provisional
Probab=98.47 E-value=3.8e-06 Score=74.60 Aligned_cols=135 Identities=11% Similarity=0.097 Sum_probs=73.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.++|++|+||||+|+.+++.... .+.-...-|+.++. ..+ ...+... +.......+.. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~----~~l----~~~~~g~-------~~~~~~~~l~~-a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR----DDL----VGQYIGH-------TAPKTKEVLKK-A 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH----HHH----HHHHhcc-------chHHHHHHHHH-c
Confidence 345889999999999999999887621 11111111344431 122 2222111 11111122222 2
Q ss_pred cCCcEEEEEecCCCc-----------cccccccCCCCCCCCCCcEEEEeeCChhHHhhc--------cCCceeecCCCCH
Q 045709 245 SKKKFVLLLDDIWEL-----------VDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQM--------EAHRSFKVECLRY 305 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~--------~~~~~~~l~~L~~ 305 (337)
..-+|+||++... +....+...+...... .+||+++....+...+ .....+.+++++.
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~-~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD-LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC-EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2349999999753 1122233333333344 6777777644432111 1245789999999
Q ss_pred HHHHHHHhHhhCCC
Q 045709 306 DDAWKLFEQKVGAD 319 (337)
Q Consensus 306 ~ea~~Lf~~~~~~~ 319 (337)
+|..+++...+-..
T Consensus 199 ~el~~I~~~~l~~~ 212 (287)
T CHL00181 199 EELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887543
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.47 E-value=1.3e-06 Score=73.28 Aligned_cols=144 Identities=18% Similarity=0.179 Sum_probs=73.6
Q ss_pred CccccchhhHHHHHHHHh-----cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLM-----EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
.+|+|.++.+..+.-++. ++...-+.+||++|+||||||..+++.. ...|. +.+.+.-....+ +..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~d-l~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGD-LAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHH-HHHHH
Confidence 569999988887655443 2346788999999999999999999988 44553 222211101111 11111
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc---------cccccC--CCCCC----------CCCCc
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD---------LDQVGL--PIPSR----------TSVSN 277 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~l~~--~l~~~----------~~g~s 277 (337)
.. + +++-+|.+|+++...- .++... ....+ .+- +
T Consensus 97 ~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F-T 151 (233)
T PF05496_consen 97 TN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF-T 151 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----E
T ss_pred Hh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc-e
Confidence 11 1 2345777788875311 111110 00010 011 3
Q ss_pred EEEEeeCChhHHhhccCC--ceeecCCCCHHHHHHHHhHhhCCC
Q 045709 278 KVVFTTREFGVCGQMEAH--RSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 278 ~IiiTtr~~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
-|=-|||...+...+... -..+++..+.+|-.++..+.+..-
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l 195 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL 195 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh
Confidence 344688877665555432 245899999999999999877443
No 58
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.47 E-value=2.1e-06 Score=76.23 Aligned_cols=132 Identities=13% Similarity=0.084 Sum_probs=71.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcC
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSK 246 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 246 (337)
-+.++|++|+|||++|+.++..... .+......|+.++. .++ ...+... +..... .+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g~-------~~~~~~-~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIGH-------TAPKTK-EILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhccc-------chHHHH-HHHHHc--
Confidence 6889999999999999888776632 12211112444432 122 2222111 111111 222222
Q ss_pred CcEEEEEecCCCc-----------cccccccCCCCCCCCCCcEEEEeeCChhHHhhc--c------CCceeecCCCCHHH
Q 045709 247 KKFVLLLDDIWEL-----------VDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQM--E------AHRSFKVECLRYDD 307 (337)
Q Consensus 247 k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~--~------~~~~~~l~~L~~~e 307 (337)
..-+|+||++... ..+..+...+.....+ .+||+++........+ + ....+++++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~-~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD-LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC-EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3368999999743 1123333333333334 5667766543221111 1 13578999999999
Q ss_pred HHHHHhHhhCC
Q 045709 308 AWKLFEQKVGA 318 (337)
Q Consensus 308 a~~Lf~~~~~~ 318 (337)
-.+++...+-.
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999888744
No 59
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.47 E-value=1e-06 Score=88.35 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=90.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC--CCC-cEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP--NHF-DFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
+.++||++++.+++..|......-+.++|++|+|||++|+.++....... ..+ ...+|. + +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 35899999999999988777667778999999999999999998873111 111 233332 1 11111 110
Q ss_pred hCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc----------cccc-ccCCCCCCCCCCcEEEEeeCChhH
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV----------DLDQ-VGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
.. .....++..+.+.+.+ ..++.+|++|+++... +... +...+ ..|.-++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHH
Confidence 00 0112334444444444 3467899999997431 1112 22222 2342355555443222
Q ss_pred Hhh-------ccCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CGQ-------MEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
... ......+.+++++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111 1123578999999999999999654
No 60
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.4e-05 Score=73.17 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=115.0
Q ss_pred CCccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
+..++||+.+++.+.+++.. +..+-+-|.|-+|.|||.+...++.+. .....-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHHHH
Confidence 46689999999999988865 467888999999999999999999887 2222223568888776666777777777
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhcC--CcEEEEEecCCCccc--cccccC--CCCCCCCCCcEEEEeeCCh--h---
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILSK--KKFVLLLDDIWELVD--LDQVGL--PIPSRTSVSNKVVFTTREF--G--- 287 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~--~~~l~~--~l~~~~~g~s~IiiTtr~~--~--- 287 (337)
..+-.... ......+....+..+..+ ..+|+|||+++.... -..+.. .+|.. .+ +++|+.---. +
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l-p~-sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL-PN-SRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC-Cc-ceeeeeeehhhhhHHH
Confidence 76611110 111224555666666644 368999999976421 111111 12222 23 4554322111 1
Q ss_pred -HHhhcc-----CCceeecCCCCHHHHHHHHhHhhCCCC--CCCCCChHHHHHHh
Q 045709 288 -VCGQME-----AHRSFKVECLRYDDAWKLFEQKVGADT--LDSHPDIPELAETL 334 (337)
Q Consensus 288 -v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~l~~i~~~i 334 (337)
....+. ....+..+|.+.++-.++|..+.-... ...++.++-.|+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKV 358 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHh
Confidence 111111 235788999999999999999985443 11233444455544
No 61
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.8e-06 Score=81.28 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=89.5
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCC-------------------CcEEEEEE
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------------FDFVIWVV 203 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 203 (337)
.++||.+..+..|.+++..++.+ .+.++|+.|+||||+|+.+.+... -... +..++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 45899999999999999876554 578999999999999999988762 1111 11122222
Q ss_pred ecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE
Q 045709 204 VSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF 281 (337)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii 281 (337)
.+....+..+ ++++..+... -..++.-++|+|+++.. ...+.+...+..-... +++|+
T Consensus 95 aas~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~-~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH-VKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC-eEEEE
Confidence 2211111111 1122111110 11245568999999865 2344443333332334 66666
Q ss_pred eeCC-hhHHhhc-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 282 TTRE-FGVCGQM-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 282 Ttr~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+|.+ ..+...+ +....+++.+++.++....+.+.+-.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 5543 3332222 23357889999999888777666543
No 62
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.43 E-value=7.5e-06 Score=78.31 Aligned_cols=135 Identities=20% Similarity=0.211 Sum_probs=79.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC-----CcEEEEEEecCc---------------c-C-HHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-----FDFVIWVVVSRD---------------L-Q-LEKIQESIAKKI 221 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-----f~~~~wv~~~~~---------------~-~-~~~~~~~i~~~l 221 (337)
....|+|+|++|+|||||.+.+........+. --.+.|+.-... + . ...-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 56789999999999999999997665211111 112333321110 0 1 134445555555
Q ss_pred CCCCcc----ccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccccc---cCCCCCCCCCCcEEEEeeCChhHHhhcc
Q 045709 222 GLFNES----WKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLDQV---GLPIPSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 222 ~~~~~~----~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
+.+.+. ....|..+..+. +...+-.++.+||||+--+..+.+.+ ...+.. -+| .||+.|+++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G--tvl~VSHDr~Fl~~va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG--TVLLVSHDRYFLDRVA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC--eEEEEeCCHHHHHhhc
Confidence 554322 234555555555 45566789999999987766443322 222222 234 8999999999887663
Q ss_pred CCceeecCC
Q 045709 294 AHRSFKVEC 302 (337)
Q Consensus 294 ~~~~~~l~~ 302 (337)
..++.+.+
T Consensus 504 -~~i~~~~~ 511 (530)
T COG0488 504 -TRIWLVED 511 (530)
T ss_pred -ceEEEEcC
Confidence 45565554
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.7e-06 Score=79.46 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+.+..++.+ .+.++|+.|+||||+|+.++....- ..... ..+.........|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC-~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC-SNGPT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC-cCCCC-------CCCccccHHHHHHhccCC
Confidence 45899999999998888776654 7899999999999999999875410 00000 000111111122221111
Q ss_pred CCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHHhh
Q 045709 223 LFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVCGQ 291 (337)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~~ 291 (337)
...-.. .....++. +.+.+.. .++.-++|+|+++... ..+.+...+..-... +++|++| ....+...
T Consensus 85 ~Dv~eidaas~~~vddI-R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~-v~fIlatte~~Kl~~t 162 (491)
T PRK14964 85 PDVIEIDAASNTSVDDI-KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH-VKFILATTEVKKIPVT 162 (491)
T ss_pred CCEEEEecccCCCHHHH-HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC-eEEEEEeCChHHHHHH
Confidence 000000 01111221 1111111 2456689999997653 244443334332344 6666655 33444332
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+ +....+.+.+++.++....+.+.+...+
T Consensus 163 I~SRc~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred HHHhheeeecccccHHHHHHHHHHHHHHcC
Confidence 2 2346789999999999999988775443
No 64
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=3.8e-06 Score=81.77 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=90.5
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+++..++ .+.+.++|..|+||||+|+.+.+... -..... +..+. .......+...-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg----~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCG----VCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCc----ccHHHHHHhccCc
Confidence 458999999999999998765 45689999999999999999988762 111110 00000 0011111110000
Q ss_pred CC---CccccCCCHHHHHHHHHH----HhcCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCCh-hHHhh-
Q 045709 223 LF---NESWKNKSMQEKAQEIFK----ILSKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREF-GVCGQ- 291 (337)
Q Consensus 223 ~~---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~- 291 (337)
.. .+.......+.+...+.. -..+++-++|||+++.... ...+...+..-... +++|++|.+. .+...
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~-v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPHKVPVTV 166 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC-cEEEEEeCCccccchHH
Confidence 00 000011112222111111 0135667999999976532 33333333222234 6777766543 22211
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
.+....+.+.+++.++....+.+.+-..+
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 12234678889999999999888775443
No 65
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.42 E-value=3e-06 Score=78.49 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=70.5
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL 223 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 223 (337)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.. .....+..+.|+.+++..+..++...+. .
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~r----P 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYR----P 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccC----C
Confidence 3467888899999888864 4677889999999999999999887 3345678899999998877666543221 0
Q ss_pred CCccccCCCHHHHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 224 FNESWKNKSMQEKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
......-. .....+.+.... .+++++||+|++..
T Consensus 248 ~~vgy~~~-~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 248 NGVGFRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCCeEec-CchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 00000000 011112222222 24689999999864
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.2e-06 Score=76.26 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=89.2
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccC-----CCCCcEE-EEEEecCccCHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDT-----PNHFDFV-IWVVVSRDLQLEKIQES 216 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~~~~~~~~~~~~~ 216 (337)
.+++|.+...+.+.+.+.+++ .+.+.++|++|+||||+|+.+.+..... ...|... +-++......... ...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 357999999999999997765 4588899999999999999998876210 0112111 1111111111111 112
Q ss_pred HHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeC-ChhHHhh-c
Q 045709 217 IAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTR-EFGVCGQ-M 292 (337)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr-~~~v~~~-~ 292 (337)
++..+... -..+++-++++|+++... .+..+...+...... +.+|++|. ...+... .
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~-~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAH-AIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCc-eEEEEEeCCcccCCHHHH
Confidence 22211100 012455689999997543 244443333322233 55665553 3333222 2
Q ss_pred cCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 293 EAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
+....+++.++++++....+...+...+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcC
Confidence 2345789999999999988888764433
No 67
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=5e-06 Score=80.03 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+.....- ..... . .+.........+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~------~-~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC-ETGVT------A-TPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC-CCCCC------C-CCCCCCHHHHHHhcCCC
Confidence 4589999999999999987654 45689999999999999999887621 11000 0 00000011111110000
Q ss_pred CC---CccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LF---NESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
.. .+.......++.. .+.... .+++-++|+|+++.... .+.+...+..-... +.+|++|.+ ..+...
T Consensus 88 ~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~-~~fIL~t~d~~kil~t 165 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPQKIPVT 165 (527)
T ss_pred CceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC-EEEEEEeCChhhCchh
Confidence 00 0000011122211 222211 35566999999986532 44443334332234 666665544 333211
Q ss_pred -ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 292 -MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 292 -~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+....+++.+++.++....+.+.+.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11235789999999999888877664
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=6.1e-06 Score=76.37 Aligned_cols=161 Identities=7% Similarity=0.020 Sum_probs=88.5
Q ss_pred CccccchhhHHHHHHHHhcCC----------CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH----------AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 213 (337)
.+++|.+..++.|.+++..+. .+.+.++|++|+|||++|+.++....- .... +.++ .....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c-~~~~----~~~C----g~C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC-TDPD----EPGC----GECRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC-CCCC----CCCC----CCCHH
Confidence 357899999999999987653 456889999999999999999876521 1100 0000 11111
Q ss_pred HHHHHHHhCCC----CccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEe
Q 045709 214 QESIAKKIGLF----NESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFT 282 (337)
Q Consensus 214 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiT 282 (337)
...+....... .+.-.....++ ++.+.+.+ .+++-++|+|+++... ....+...+..-..+ +.+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~-~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR-TVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC-CeEEEE
Confidence 11111100000 00001112222 22233322 2455588899998652 223333333222334 666666
Q ss_pred eCCh-hHHhhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 283 TREF-GVCGQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 283 tr~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
|.+. .+...+ +....+.+.+++.++..+.+...
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 6653 343332 23468899999999999888754
No 69
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.40 E-value=9.1e-06 Score=75.38 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...|- .+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi-----~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFI-----RVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEE-----EEeh----
Confidence 3568888888887776531 245678999999999999999999876 33332 1111
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SR 272 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 272 (337)
..+ ..... ..........+.......+.+|+||+++.... +..+...+. ..
T Consensus 213 s~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 111 11110 11111122222233346789999999874310 111111111 11
Q ss_pred CCCCcEEEEeeCChhHHhh--cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCGQ--ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
..+ ..||.||...+.... +. -...+.++..+.++..++|...........+.++.+++.
T Consensus 282 ~~~-v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~ 345 (398)
T PTZ00454 282 TTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVS 345 (398)
T ss_pred CCC-EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHH
Confidence 234 678888876543221 11 245689999999998888887765433333445666654
No 70
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=2.4e-06 Score=83.20 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=91.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+.+..++. +.+.++|..|+||||+|+.+++...- ...+. ...+........|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 4589999999999999987654 44689999999999999999887721 11100 001111122222221100
Q ss_pred CCC---ccccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... +.......++. +.+.+. ..++.-++|||+++... ..+.+...+-.-... .++|++|.+ ..+...
T Consensus 88 ~D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~-v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC-eEEEEecCCccccchH
Confidence 000 00001112222 222222 23566799999998652 344443333222223 555554444 444322
Q ss_pred -ccCCceeecCCCCHHHHHHHHhHhh
Q 045709 292 -MEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 292 -~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.+....|++.+|+.++....+.+.+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 2234688999999999999998766
No 71
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.9e-06 Score=80.38 Aligned_cols=170 Identities=12% Similarity=0.115 Sum_probs=93.3
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE-ecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV-VSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 221 (337)
.+++|.+..++.|.+++.+++.+ .+.++|++|+||||+|+.+++...- ...+....|.. ...+.........+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c-~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC-QRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC-CCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 45899999999999988876554 5889999999999999999887721 11111111110 001111111222222111
Q ss_pred CCCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHHh
Q 045709 222 GLFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVCG 290 (337)
Q Consensus 222 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~ 290 (337)
......+ .....++.. .+.+.+ .+++-++|+|+++... .++.+...+..-... +.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~-t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH-AIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHHhHH
Confidence 1100000 111122222 233333 2455689999998653 455554444433344 6666555 4344432
Q ss_pred hc-cCCceeecCCCCHHHHHHHHhHhh
Q 045709 291 QM-EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 291 ~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.+ .....+++.++++++....+...+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 22 123578899999999888888766
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=5.1e-06 Score=83.47 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..++.|.+++.+++. +.+.++|..|+||||+|+.+.+.+.-. ..... ..+........|.....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCC-------CCCcccHHHHHHHcCCC
Confidence 3589999999999999987655 457899999999999999998877211 11100 00011111111111100
Q ss_pred CCCc--cc---cCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeC-ChhHH
Q 045709 223 LFNE--SW---KNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTR-EFGVC 289 (337)
Q Consensus 223 ~~~~--~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr-~~~v~ 289 (337)
...+ .+ .....++.. .+.+. ..++.-++|||+++.. ..++.|+..+..-... +.+|++|. ...+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~-~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH-LKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhh
Confidence 0000 00 111122222 22222 2355568999999865 3344444444433344 66665554 33444
Q ss_pred hhc-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 290 GQM-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 290 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
..+ +....|++.+++.++..+.+.+.+-
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 322 3346889999999999888887653
No 73
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.39 E-value=1.9e-06 Score=81.12 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=82.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|++|+|||+|++.+++... .....+++++. ..+...+...+... . ...++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999873 12233455542 33444455444211 1 12233333
Q ss_pred cCCcEEEEEecCCCcccc----ccccCCCCC-CCCCCcEEEEeeCCh---------hHHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELVDL----DQVGLPIPS-RTSVSNKVVFTTREF---------GVCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~----~~l~~~l~~-~~~g~s~IiiTtr~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
. ..-+|++||+...... +.+...+.. ...| ..||+||... .+.+.+..+..+.+++++.++-..
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 3 3458899999764321 122111110 1134 5788888542 223334455788999999999999
Q ss_pred HHhHhhCCCCCCCCC
Q 045709 311 LFEQKVGADTLDSHP 325 (337)
Q Consensus 311 Lf~~~~~~~~~~~~~ 325 (337)
++.+++-......++
T Consensus 279 iL~~k~~~~~~~l~~ 293 (445)
T PRK12422 279 FLERKAEALSIRIEE 293 (445)
T ss_pred HHHHHHHHcCCCCCH
Confidence 999988544333333
No 74
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.38 E-value=9.2e-06 Score=72.58 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCccccchhhHHHHHHHHhcCC---CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLMEEH---AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
.+.+.+|+..+..+..++.+.. +..|-|+|-.|.|||.+.+.+++.. .. ..+|+++-..++..-++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678999999999999887643 3456899999999999999998876 22 3589999999999999999999
Q ss_pred HhCCC-CccccC----CCHHHHHHHHHH--Hhc--CCcEEEEEecCCCccccccccCC----CC--CCCCCCcEEEEeeC
Q 045709 220 KIGLF-NESWKN----KSMQEKAQEIFK--ILS--KKKFVLLLDDIWELVDLDQVGLP----IP--SRTSVSNKVVFTTR 284 (337)
Q Consensus 220 ~l~~~-~~~~~~----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~l~~~----l~--~~~~g~s~IiiTtr 284 (337)
+.+.. .+.... .+.......+.+ ... ++.++||||+++...+.+....+ +. -..+. ..|+...-
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~-i~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPT-IVIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCc-eEEEEecc
Confidence 98632 211111 112222333333 122 45899999999887665433111 00 01122 33333222
Q ss_pred Ch-h-HHhhccCC--ceeecCCCCHHHHHHHHhHhh
Q 045709 285 EF-G-VCGQMEAH--RSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 285 ~~-~-v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.- . ....++.. .++.++..+.+|...+|.+.-
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 21 1 12223433 356788999999888886544
No 75
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.38 E-value=3.4e-06 Score=76.36 Aligned_cols=144 Identities=11% Similarity=0.111 Sum_probs=82.8
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+...+.+..++..+. ..++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~ 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFAS 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHH
Confidence 457999999999999987765 4567779999999999999998876 222 23334333 111111111111000
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--c-cccccCCCCCCCCCCcEEEEeeCChhH-Hhhc-cCCce
Q 045709 223 LFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--D-LDQVGLPIPSRTSVSNKVVFTTREFGV-CGQM-EAHRS 297 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~-~~~l~~~l~~~~~g~s~IiiTtr~~~v-~~~~-~~~~~ 297 (337)
. ..+.+.+-+||+||++... . ...+...+.....+ +++|+||....- ...+ +....
T Consensus 94 ~------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~-~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 94 T------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKN-CSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred h------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCC-ceEEEEcCChhhchHHHHhhceE
Confidence 0 0011345689999997651 1 12222222222345 788888865431 1111 22346
Q ss_pred eecCCCCHHHHHHHHh
Q 045709 298 FKVECLRYDDAWKLFE 313 (337)
Q Consensus 298 ~~l~~L~~~ea~~Lf~ 313 (337)
+.++..+.++..+++.
T Consensus 155 i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 155 IDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEeCCCCHHHHHHHHH
Confidence 7887888888776654
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.37 E-value=1.1e-05 Score=67.25 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=78.1
Q ss_pred HHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCC-------------------CCCcEEEEEEecCccCHHHHH
Q 045709 155 RVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTP-------------------NHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 155 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~ 214 (337)
.|.+.+..++. +.+.++|+.|+||||+|+.+........ .+.+. .++.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~------- 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQ------- 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccC-------
Confidence 45555655554 6799999999999999999988773110 01111 11111100
Q ss_pred HHHHHHhCCCCccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-
Q 045709 215 ESIAKKIGLFNESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF- 286 (337)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~- 286 (337)
....++.. .+.+.+ .+.+-++|+||++... .++.+...+...... +.+|++|++.
T Consensus 75 ---------------~~~~~~i~-~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~ 137 (188)
T TIGR00678 75 ---------------SIKVDQVR-ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPN-TLFILITPSPE 137 (188)
T ss_pred ---------------cCCHHHHH-HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChH
Confidence 11112221 111211 2456689999997653 344454444443344 6777777653
Q ss_pred hHHhhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 287 GVCGQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 287 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
.+...+ +....+++.+++.++..+.+.+.
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 222222 23468899999999999999887
No 77
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6e-06 Score=79.82 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=92.8
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+.+.+++ .+.+.++|+.|+||||+|+.+.+...- ...... ..+........|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCC-------CCCcccHHHHHHhcCCC
Confidence 457999988888888887765 577889999999999999999887721 111100 01111112222221110
Q ss_pred CCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
...-.. .....++ ++.+.+.+ .+++-++|||+++.. ..++.|...+..-... ..+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~-~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR-VTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC-EEEEEecCChhhhhHH
Confidence 000000 0111221 22232222 356679999999765 3344454444322233 556665544 444322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ +....+++.+++.++....+...+...
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHc
Confidence 2 233578999999999998888766443
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=5.7e-06 Score=80.04 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=91.8
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..++.|.+++.+++.. .+.++|+.|+||||+|+.+++...- ..... + ...........|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---C----CcccccHHHHHhhcccC
Confidence 45899999999999999876654 5789999999999999999987621 11110 0 00111111222211100
Q ss_pred CCCc-----cccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE-eeCChhHH
Q 045709 223 LFNE-----SWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFGVC 289 (337)
Q Consensus 223 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii-Ttr~~~v~ 289 (337)
...+ .......++. +.+.+.+ .++.-++|+|+++.. ...+.+...+..-... +.+|+ ||....+.
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~-~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH-LIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHhhH
Confidence 0000 0001112222 2222221 345568999999754 3344444444333334 55555 44444444
Q ss_pred hh-ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 290 GQ-MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 290 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
.. .+....+++.+++.++..+.+.+.+..
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHH
Confidence 32 233468999999999998888876643
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=5.8e-06 Score=79.53 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|++..+..+.+++..++ .+.+.++|+.|+||||+|+.+++... -.. |.... ..........+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCCC-CCcccHHHHHHHcCCC
Confidence 458999999999999987654 45788999999999999999988762 111 11110 1111122222221111
Q ss_pred CCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEee-CChhHHhh
Q 045709 223 LFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTT-REFGVCGQ 291 (337)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~~ 291 (337)
...-.. .....++. +.+...+ .+++-++|+|+++.. ..+..+...+..-... +.+|++| ....+...
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCChHhhhHH
Confidence 000000 01112221 2222211 234447999999764 3344443333322233 5555544 43344322
Q ss_pred -ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 -MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 -~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
.+....+++.+++.++....+...+..
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~k 193 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKK 193 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 223467899999999999888886643
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.35 E-value=3.3e-06 Score=79.64 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=82.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|.+|+|||+|++.+++... ....-..++|++. .++...+...+... +.. .+.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHHH
Confidence 35699999999999999999999872 1122235666654 34555565555321 112 233333
Q ss_pred cCCcEEEEEecCCCccc---c-ccccCCCCC-CCCCCcEEEEeeC-Chh--------HHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELVD---L-DQVGLPIPS-RTSVSNKVVFTTR-EFG--------VCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~g~s~IiiTtr-~~~--------v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
..+.-+|+|||++.... + ..+...+.. ...+ ..||+||. ... +.+.+..+.++.+++.+.+.-..
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 34566899999975421 1 122111111 1234 57888875 322 12233445688999999999999
Q ss_pred HHhHhhCCC
Q 045709 311 LFEQKVGAD 319 (337)
Q Consensus 311 Lf~~~~~~~ 319 (337)
++.+.+...
T Consensus 271 IL~~~~~~~ 279 (440)
T PRK14088 271 IARKMLEIE 279 (440)
T ss_pred HHHHHHHhc
Confidence 999988543
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.34 E-value=4.2e-06 Score=85.02 Aligned_cols=155 Identities=16% Similarity=0.206 Sum_probs=90.3
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---CcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
..++||++++++++..|......-+.++|++|+|||++|..++.......-. -...+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 3479999999999999987666677899999999999999998876211111 1234442 1 121211 1
Q ss_pred hCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc---------ccccccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV---------DLDQVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
+.. .....++..+.+.+.+ ..++.+|++|+++... +...+..+ ....|.-++|-+|...+...
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp--~l~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP--ALARGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH--HHhCCCcEEEEeCCHHHHHH
Confidence 100 1112333444444333 3568999999996431 11222221 11223245666665544321
Q ss_pred h-------ccCCceeecCCCCHHHHHHHHhHh
Q 045709 291 Q-------MEAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 291 ~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
. ......+.++..+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 112356788999999988887653
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=6.4e-06 Score=75.14 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCC-CCcEEEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPN-HFDFVIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
..++|.++....+...+.+++. ..+.|+|+.|+||||+|..+.+....... .+... ............+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 5689999999999999887654 46999999999999999999888732110 01111 0011111112233332221
Q ss_pred C-------CCCcc-----ccCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEe
Q 045709 222 G-------LFNES-----WKNKSMQEKAQEIFKILS-----KKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFT 282 (337)
Q Consensus 222 ~-------~~~~~-----~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiT 282 (337)
. .+.+. ......++ +..+.+++. ++.-++|+|+++... ..+.+...+..-... +.+|++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~-~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR-ALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC-ceEEEE
Confidence 1 00000 01112333 334454442 466799999998653 223332222221223 455554
Q ss_pred eCC-hhHHhhc-cCCceeecCCCCHHHHHHHHhHhh
Q 045709 283 TRE-FGVCGQM-EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 283 tr~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
|.+ ..+...+ +....+++.+++.++..+++.+..
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 443 3332222 233589999999999999998843
No 83
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.31 E-value=4.4e-06 Score=71.87 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=75.7
Q ss_pred ccc-cchh-hHHHHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHh
Q 045709 145 TVV-GLQL-TFDRVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 145 ~~v-Gr~~-~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
+|+ |... .+..+.++... .....+.|+|.+|+|||+||+.+++... ... ....+++..... .. +
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~------~~----~ 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPL------LA----F 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhH------HH----H
Confidence 344 4433 33444444332 3456789999999999999999998762 122 234444433211 00 0
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccc--cccCCCCC-CCCCCcEEEEeeCChhHH--------h
Q 045709 222 GLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLD--QVGLPIPS-RTSVSNKVVFTTREFGVC--------G 290 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~l~~~l~~-~~~g~s~IiiTtr~~~v~--------~ 290 (337)
... ...-+||+||++....+. .+...+.. ...+...+|+|++..... +
T Consensus 86 --------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 233479999997653221 22222211 112312466666643321 1
Q ss_pred hccCCceeecCCCCHHHHHHHHhHhh
Q 045709 291 QMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 291 ~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.+.....+++++|++++-..++.+.+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 23334688999999988777777654
No 84
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=9.2e-06 Score=78.99 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCc--EEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD--FVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...- ..... ...+- ......-...|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccc----cCcccHHHHHHhcC
Confidence 4589999999999999987654 46889999999999999999887621 11100 00000 00111112222221
Q ss_pred hCCCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHH
Q 045709 221 IGLFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVC 289 (337)
Q Consensus 221 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~ 289 (337)
..... +.......++. +.+.+.+ .+++-++|+|+++... ..+.+...+..-... +.+|++| ....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~-~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-VKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC-eEEEEEeCChhhhh
Confidence 11100 00011122222 2222222 2455689999997653 244444334332334 6666555 434443
Q ss_pred hhc-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 290 GQM-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 290 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
..+ +....+++.+++.++....+.+.+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke 207 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKE 207 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHc
Confidence 222 234678999999999999988876433
No 85
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2.2e-05 Score=72.06 Aligned_cols=170 Identities=13% Similarity=0.068 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCC-CCCcE-EE-EEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDF-VI-WVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~-~~-wv~~~~~~~~~~~~~~i~~ 219 (337)
.+++|.+.....|.+.+..++. ..+.++|+.|+||+|+|..+.+...-.. ..... .. -.+... .......+.+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHHHc
Confidence 5689999999999999887764 4689999999999999999988773111 00000 00 000000 000111222221
Q ss_pred HhCCC-----C---ccc----cCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEE
Q 045709 220 KIGLF-----N---ESW----KNKSMQEKAQEIFKILS-----KKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVV 280 (337)
Q Consensus 220 ~l~~~-----~---~~~----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~Ii 280 (337)
..... . +.- .....++ ++.+.+.+. +++-++|+|+++... ....+...+..-..+ +.+|
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~-~~~I 175 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR-SLFL 175 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC-eEEE
Confidence 11000 0 000 0112222 444444443 456799999997652 233333333222234 6677
Q ss_pred EeeCChh-HHhhc-cCCceeecCCCCHHHHHHHHhHhh
Q 045709 281 FTTREFG-VCGQM-EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 281 iTtr~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
++|.+.. +...+ +....+.+.+++.++..+++....
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 7777653 32222 234688999999999999998865
No 86
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.30 E-value=1.2e-05 Score=70.52 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=79.1
Q ss_pred Cccccch---hhHHHHHHHHhcC---CCeEEEEEecCCCcHHHHHHHHHHhhccCCC---CCcEEEEEEecCccCHHHHH
Q 045709 144 PTVVGLQ---LTFDRVWRCLMEE---HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN---HFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 144 ~~~vGr~---~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~ 214 (337)
+.++|-. ..++.|.++|..+ ..+.+.|||.+|.|||++++.+...+....+ .--.++.+.....++...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4567743 3445555555433 5678999999999999999999987632111 11147788888999999999
Q ss_pred HHHHHHhCCCCccccCCCHHHHHHHHHHHhcC-CcEEEEEecCCCc
Q 045709 215 ESIAKKIGLFNESWKNKSMQEKAQEIFKILSK-KKFVLLLDDIWEL 259 (337)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 259 (337)
..|+.+++.+.. ...+...........++. +--+||+|++++.
T Consensus 114 ~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 114 SAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 999999998753 233444445455555543 4559999999874
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.29 E-value=1.1e-05 Score=82.12 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=88.8
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC--CC-Cc-EEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP--NH-FD-FVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~-f~-~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++||+.++.+++..|.......+.++|.+|+|||++|..+........ .. .. .+++++++. +. .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~----a 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----A 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----h
Confidence 34899999999999999877777788999999999999999998872110 00 11 222222221 11 0
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCcc---------ccccccCCCCCCCCCCcEEEEeeCChhH
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKIL--SKKKFVLLLDDIWELV---------DLDQVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
+.. .....+...+.+...+ .+++.+|++|+++... +...+..+. ...|.-++|-+|...+.
T Consensus 248 --g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~--l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 --GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA--LARGELHCVGATTLDEY 319 (857)
T ss_pred --ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch--hhcCCCeEEEcCCCHHH
Confidence 000 0111233333333332 2568999999998652 112222222 23342466655555443
Q ss_pred Hhhc-------cCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CGQM-------EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
...+ .....+.+...+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1111 122356677778999999887654
No 88
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.29 E-value=4.9e-06 Score=72.23 Aligned_cols=168 Identities=12% Similarity=0.139 Sum_probs=101.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEE-EEecCccCHHHHHHHHHHHh
Q 045709 143 PPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW-VVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l 221 (337)
-.+++|.+..+.-|.+.+.....+....+|++|.|||+-|+.+..... -.+-|.+.+. .|+|......-+-.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGisvvr~------ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGISVVRE------ 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccchhhhcccccccccchhh------
Confidence 356899999999999999887889999999999999999999988873 2345554432 33443221110000
Q ss_pred CCCCccccCCCHHHHHHHHHHHh--cCCc-EEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHhhc-cC
Q 045709 222 GLFNESWKNKSMQEKAQEIFKIL--SKKK-FVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQM-EA 294 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~~-~~ 294 (337)
...+...+........ ...+ -++|||++++. +.|..++..+.+.... ++.++.|.. ..+...+ +.
T Consensus 108 -------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~-trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 108 -------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRT-TRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred -------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccc-eEEEEEcCChhhCChHHHhh
Confidence 1111111111111000 0123 37889999876 5687776655554444 665554443 2222221 12
Q ss_pred CceeecCCCCHHHHHHHHhHhhCCCCCCCCC
Q 045709 295 HRSFKVECLRYDDAWKLFEQKVGADTLDSHP 325 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 325 (337)
..-|..++|.+++...-++..+-..+...++
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~ 210 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDIDD 210 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCCH
Confidence 2468899999999999888888665544444
No 89
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.29 E-value=8.1e-06 Score=77.52 Aligned_cols=161 Identities=13% Similarity=0.144 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCC---CCCcEEEEEEecCc
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIWVVVSRD 207 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~ 207 (337)
.++.|.+..++.|.+.+.- ...+-+.++|++|+|||++|+.+++... .. .......|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch
Confidence 3467888888888777531 2355689999999999999999999872 11 01223445544432
Q ss_pred cCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc---------c-----cccccCCCCCC
Q 045709 208 LQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV---------D-----LDQVGLPIPSR 272 (337)
Q Consensus 208 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~-----~~~l~~~l~~~ 272 (337)
.+ +...... .......+....+... .+++++|+||+++... + +..+...+...
T Consensus 261 ----eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 261 ----EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ----hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 11 1110000 0001112222222222 3578999999998531 1 11222222211
Q ss_pred --CCCCcEEEEeeCChhHHh-h-c---cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 273 --TSVSNKVVFTTREFGVCG-Q-M---EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 273 --~~g~s~IiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
..+ ..||.||....... . . .-+..|++++.+.++..++|.++...
T Consensus 329 ~~~~~-ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDN-VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCc-eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 123 45555665444321 1 1 12456899999999999999998743
No 90
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.28 E-value=8.7e-06 Score=83.03 Aligned_cols=155 Identities=14% Similarity=0.179 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC----CcEEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH----FDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++||++++.+++..|.......+.++|.+|+|||+++..++..... ... ....+|.- ++..+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l-----~~~~l~----a 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLAL-----DMGALI----A 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEe-----eHHHHh----h
Confidence 348999999999999998776677779999999999999999887621 110 12222221 111111 0
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccc---------cccccCCCCCCCCCCcEEEEeeCChhH
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVD---------LDQVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~---------~~~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
+.. .....+.....+...+. +++.+|++|+++.... ...+..+. ...|.-++|-+|...+.
T Consensus 243 --~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 --GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDEY 314 (852)
T ss_pred --cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHHH
Confidence 000 01122333344443332 4689999999985421 11222222 23342455555554433
Q ss_pred Hhh-------ccCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CGQ-------MEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
-.. ......+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 1123568899999999999987653
No 91
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.28 E-value=1.3e-05 Score=74.97 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|.+..++.|.+.+.- ....-+.++|++|+|||++|+.+++.. ...|- .+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi-----~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFL-----RVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEE-----EEecc----
Confidence 467888888888776631 234568899999999999999999987 34442 22111
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 273 (337)
.+. ... ...........+.....+.+.+|+||+++.... +..+...+. ...
T Consensus 252 eL~----~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELI----QKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhh----hhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111 111 011111112222223345788999999864310 011111111 112
Q ss_pred CCCcEEEEeeCChhHHhh-c----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 274 SVSNKVVFTTREFGVCGQ-M----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
.+ ..||.||...+.... + .....+.+++.+.++..++|..++..-....+.++..++.
T Consensus 321 ~~-V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~ 383 (438)
T PTZ00361 321 GD-VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIM 383 (438)
T ss_pred CC-eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHH
Confidence 23 678888876544322 1 1235789999999999999998875443333445555543
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=3.9e-06 Score=79.22 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|..|+|||+|++.+++... ....-..+++++ ..++...+...+.... .....+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 35688999999999999999998762 112223445553 3456666666654210 1223344444
Q ss_pred cCCcEEEEEecCCCcc---cc-ccccCCCCC-CCCCCcEEEEeeCCh---------hHHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELV---DL-DQVGLPIPS-RTSVSNKVVFTTREF---------GVCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~g~s~IiiTtr~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
. ..-+|||||+.... .+ +.+...+.. ...+ ..||+|+... .+.+.+..+-++.+++++.++-..
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~-k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND-KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC-CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 3 34488999997542 11 222222211 1234 5788887643 234445556788999999999999
Q ss_pred HHhHhhCC
Q 045709 311 LFEQKVGA 318 (337)
Q Consensus 311 Lf~~~~~~ 318 (337)
++.+++-.
T Consensus 283 iL~~~~~~ 290 (450)
T PRK14087 283 IIKKEIKN 290 (450)
T ss_pred HHHHHHHh
Confidence 99998853
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.26 E-value=7.8e-06 Score=76.59 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=80.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|.+|+|||+|++.+++... ....-..++|++. ..+...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 35688999999999999999999873 2221234566643 33444455444311 122 233333
Q ss_pred cCCcEEEEEecCCCccc---c-ccccCCCCC-CCCCCcEEEEeeCChh---------HHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELVD---L-DQVGLPIPS-RTSVSNKVVFTTREFG---------VCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~g~s~IiiTtr~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
.+ .-+|+|||++.... + +.+...+.. ...+ ..+|+||.... +.+.+.....+.+++.+.++-..
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 32 34899999975422 1 112111111 1234 56888776421 22333344578999999999999
Q ss_pred HHhHhhCCCC
Q 045709 311 LFEQKVGADT 320 (337)
Q Consensus 311 Lf~~~~~~~~ 320 (337)
++.+++....
T Consensus 276 il~~~~~~~~ 285 (405)
T TIGR00362 276 ILQKKAEEEG 285 (405)
T ss_pred HHHHHHHHcC
Confidence 9999986543
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2e-05 Score=76.82 Aligned_cols=171 Identities=12% Similarity=0.125 Sum_probs=93.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE-ecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV-VSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l 221 (337)
.+++|.+..+..|.+++.+++. +.+.++|+.|+||||+|+.+.+... -......-.|.. .............+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 4589999999999998877655 4588999999999999999988772 111111001111 001111112222222111
Q ss_pred CCCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHHh
Q 045709 222 GLFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVCG 290 (337)
Q Consensus 222 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~ 290 (337)
......+ .....+++.. +.+.+ .+++-++|+|+++... ..+.+...+..-... +.+|++| +...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~-tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH-AIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhH
Confidence 1000000 1111233322 22222 3455689999997653 244444444332234 5555544 4344433
Q ss_pred h-ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 291 Q-MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 291 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
. .+....+++.+++.++....+.+.+.
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHH
Confidence 2 23456899999999998888877653
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.24 E-value=8e-06 Score=81.46 Aligned_cols=156 Identities=16% Similarity=0.241 Sum_probs=91.1
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---CcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
+.++||++++.+++..|.......+.++|.+|+|||++|+.++......... .++.+|.. ++..+ +.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 3489999999999998887655667799999999999999998875221112 13344421 11111 10
Q ss_pred hCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc----------cccccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWEL----------VDLDQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
+.. .....+...+.+...+ +.++.+|+||+++.. .+...+..++. ..|.-++|-+|...+..
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFS 328 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHH
Confidence 000 0112333334444433 346789999999743 11212222222 23324555555544421
Q ss_pred hh-------ccCCceeecCCCCHHHHHHHHhHhh
Q 045709 290 GQ-------MEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 290 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.. ......+.+++++.++..+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11 1123579999999999999998654
No 96
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-05 Score=77.10 Aligned_cols=155 Identities=12% Similarity=0.154 Sum_probs=90.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccC--------------------CCCCcEEEEE
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDT--------------------PNHFDFVIWV 202 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 202 (337)
.+++|.+...+.|.+++..+.. +.+.++|+.|+||||+|+.+.....-. ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 4589999999999999987655 458899999999999999988866200 011221 111
Q ss_pred EecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEE
Q 045709 203 VVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVV 280 (337)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~Ii 280 (337)
+.+.......+ +.++.++... -..+++-++|+|+++... .++.+...+..-... +.+|
T Consensus 96 d~~~~~~vd~I-r~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~-tifI 155 (614)
T PRK14971 96 DAASNNSVDDI-RNLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY-AIFI 155 (614)
T ss_pred cccccCCHHHH-HHHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC-eEEE
Confidence 11111111111 1111111100 012345588999997653 344554444333334 6665
Q ss_pred Eee-CChhHHhhc-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 281 FTT-REFGVCGQM-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 281 iTt-r~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
++| ....+...+ +....+++.+++.++....+.+.+-..
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e 196 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE 196 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc
Confidence 544 444444332 334678999999999998888766443
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.23 E-value=7.3e-06 Score=77.81 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=80.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|.+|+|||+|++.+++... ....-..++|++.. .+...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35689999999999999999999883 12222345566443 334444444421 111 2233334
Q ss_pred cCCcEEEEEecCCCccc----cccccCCCCC-CCCCCcEEEEeeCChh---------HHhhccCCceeecCCCCHHHHHH
Q 045709 245 SKKKFVLLLDDIWELVD----LDQVGLPIPS-RTSVSNKVVFTTREFG---------VCGQMEAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g~s~IiiTtr~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 310 (337)
+ +.-+|+|||++.... .+.+...+.. ...+ ..||+||.... +.+.+....++++++.+.++-..
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3 344899999975421 1122111111 1234 56888776532 23344445689999999999999
Q ss_pred HHhHhhCCC
Q 045709 311 LFEQKVGAD 319 (337)
Q Consensus 311 Lf~~~~~~~ 319 (337)
++.+++...
T Consensus 288 il~~~~~~~ 296 (450)
T PRK00149 288 ILKKKAEEE 296 (450)
T ss_pred HHHHHHHHc
Confidence 999988543
No 98
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.23 E-value=6e-06 Score=64.59 Aligned_cols=91 Identities=23% Similarity=0.126 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.|+|++|+||||+++.++.... .....+++++.+........... ....... ............+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998872 22234555555443222111111 0011110 02223333444455554
Q ss_pred cCC-cEEEEEecCCCcccc
Q 045709 245 SKK-KFVLLLDDIWELVDL 262 (337)
Q Consensus 245 ~~k-~~LlVlDdv~~~~~~ 262 (337)
... ..+|++|+++.....
T Consensus 75 ~~~~~~viiiDei~~~~~~ 93 (148)
T smart00382 75 RKLKPDVLILDEITSLLDA 93 (148)
T ss_pred HhcCCCEEEEECCcccCCH
Confidence 444 489999999876443
No 99
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.23 E-value=6.2e-05 Score=72.36 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=88.5
Q ss_pred CccccchhhHHHHHHHHh---c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+....++.+.+. . ...+-+.++|++|+|||+||+.+++.. ..+| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 356788776665554432 1 124458899999999999999998876 2332 22221 1
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 273 (337)
.+. ... .......+...+.......+++|+|||++.... ...+...+. ...
T Consensus 123 ~~~----~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFV----EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHH----HHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111 111 011112222333333446679999999975310 111111111 112
Q ss_pred CCCcEEEEeeCChhHH-hhc----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 274 SVSNKVVFTTREFGVC-GQM----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
.+ -.||.||...... ..+ .-...+.++..+.++-.++|..++.......+.++..++.
T Consensus 192 ~~-v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 192 TG-VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred CC-eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 23 4555566554321 111 1346788999999999999988775433223344555554
No 100
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.5e-05 Score=74.65 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=93.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+++... -..... .............|....+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4589999999999998876554 5678999999999999999988762 101000 0001122233333333221
Q ss_pred CCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... +.......++. +.+.+.+ .+++-++|||+++.. ...+.+...+...... +.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChhhhhHH
Confidence 110 00011122222 2222222 245669999999755 2344454334333334 666666543 333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ +....+.+++++.++....+.+.+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~e 195 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAE 195 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 2 233578899999999888888776443
No 101
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=5.9e-05 Score=71.34 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+++..++. +.+.++|+.|+||||+|+.+.+.........+... .........+...-.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-------c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP-------CNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC-------CcccHHHHHHhcCCC
Confidence 4589999999999999977654 56889999999999999999887621100000000 000000000000000
Q ss_pred CC---CccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LF---NESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
.. -+.......++. ..+.+.+ .+++-++|+|+++... ..+.+...+..-... +.+|++|.+ ..+...
T Consensus 90 ~d~~~i~g~~~~gid~i-r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~-~~~Il~t~~~~kl~~t 167 (451)
T PRK06305 90 LDVLEIDGASHRGIEDI-RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH-VKFFLATTEIHKIPGT 167 (451)
T ss_pred CceEEeeccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC-ceEEEEeCChHhcchH
Confidence 00 000000111111 1112211 2566789999987542 233443334332234 667666643 333222
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+ +....+++.++++++....+.+.+-
T Consensus 168 I~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred HHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 1 2345789999999999888887654
No 102
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.8e-05 Score=71.92 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=87.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCC--CcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
..++|.+.....|.+++..+.. +.+.++|+.|+||||+|+.++....-.... .+|.. ..-...+-..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~----------c~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK----------CENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc----------cHHHHHHhcC
Confidence 3579999999999999987654 456789999999999999998876210000 00000 0000000000
Q ss_pred hCCC---CccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHH
Q 045709 221 IGLF---NESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVC 289 (337)
Q Consensus 221 l~~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~ 289 (337)
-... .+.......+ ..+.+...+ .+++-++|+|+++... ..+.+...+...... ..+|++| +...+.
T Consensus 86 ~~~d~~eidaas~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~-~v~Il~tt~~~kl~ 163 (486)
T PRK14953 86 SFPDLIEIDAASNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR-TIFILCTTEYDKIP 163 (486)
T ss_pred CCCcEEEEeCccCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEECCHHHHH
Confidence 0000 0000011111 112222222 3556699999997652 334443333332334 5555554 433333
Q ss_pred hh-ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 290 GQ-MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 290 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
.. .+....+.+.+++.++....+.+.+-.
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence 22 223457899999999998888887643
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00012 Score=65.25 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=98.4
Q ss_pred cccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 146 VVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
+=|-++.+++|.+...- .+++=|.+||++|.|||-||+.++++- ...|-. +..
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIr-----vvg------ 218 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATFIR-----VVG------ 218 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceEEE-----ecc------
Confidence 44678888888777532 356778999999999999999999987 455532 222
Q ss_pred HHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCccc----------------ccccc---CCCCCC
Q 045709 213 IQESIAKKIGLFNESWKNKSMQEKAQEIFKILS-KKKFVLLLDDIWELVD----------------LDQVG---LPIPSR 272 (337)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~----------------~~~l~---~~l~~~ 272 (337)
.++.+..-.. ...+.+.+.+.-+ ..+++|.+|+++.... +-++. .-|..
T Consensus 219 --SElVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~- 287 (406)
T COG1222 219 --SELVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP- 287 (406)
T ss_pred --HHHHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-
Confidence 1222222111 1234455555544 4689999999874310 11111 12222
Q ss_pred CCCCcEEEEeeCChhHHhh--cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCGQ--ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
.|+-|||..|...++... +. -+..|+++.-+.+.-.++|+-++..-+...+-+++.+++
T Consensus 288 -~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 288 -RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred -CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 233699998876665322 22 246788886677777778887776555455666777765
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=1.5e-05 Score=76.87 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=83.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS 245 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (337)
..+.|+|..|+|||.|++.+++.... ...-..++|++. .++...+...+.. .. ...+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998731 112234556543 3444455444321 11 122333333
Q ss_pred CCcEEEEEecCCCccc---cc-cccCCCCC-CCCCCcEEEEeeCCh---------hHHhhccCCceeecCCCCHHHHHHH
Q 045709 246 KKKFVLLLDDIWELVD---LD-QVGLPIPS-RTSVSNKVVFTTREF---------GVCGQMEAHRSFKVECLRYDDAWKL 311 (337)
Q Consensus 246 ~k~~LlVlDdv~~~~~---~~-~l~~~l~~-~~~g~s~IiiTtr~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 311 (337)
+ .=+|||||++.... |. .+...+.. ..++ ..|||||... .+.+.+...-++++++.+.+.-..+
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g-k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN-KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcC-CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 2 34899999975421 21 12111111 1234 5788888752 2344555677899999999999999
Q ss_pred HhHhhCCCCCC
Q 045709 312 FEQKVGADTLD 322 (337)
Q Consensus 312 f~~~~~~~~~~ 322 (337)
+.+++......
T Consensus 455 L~kka~~r~l~ 465 (617)
T PRK14086 455 LRKKAVQEQLN 465 (617)
T ss_pred HHHHHHhcCCC
Confidence 99998655433
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.13 E-value=1.3e-05 Score=62.40 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 106
>PRK06620 hypothetical protein; Validated
Probab=98.11 E-value=6e-06 Score=70.15 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=67.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS 245 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (337)
+.+.|+|++|+|||+|++.+.+.. .. .++. .... . . ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~--------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF--------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh--------------------c---h-------hHH-
Confidence 568999999999999999887654 11 1111 0000 0 0 011
Q ss_pred CCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCChh-------HHhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 246 KKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREFG-------VCGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 246 ~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
...-+|++||++...+ +-.+...+. .+| ..||+|++... +.+.+....++++++++.++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1234788999974322 111111111 346 78999887433 33444456689999999999998988887
Q ss_pred CC
Q 045709 317 GA 318 (337)
Q Consensus 317 ~~ 318 (337)
..
T Consensus 161 ~~ 162 (214)
T PRK06620 161 SI 162 (214)
T ss_pred HH
Confidence 53
No 107
>CHL00176 ftsH cell division protein; Validated
Probab=98.09 E-value=7.8e-05 Score=73.17 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=84.9
Q ss_pred CccccchhhHHHHHHH---HhcC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRC---LMEE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.++.|.++..+.+.+. +... ..+-+.++|++|+|||+||+.+++.. ..+| +.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~-----i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF-----FSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe-----eeccH----H
Confidence 4578877666655444 3321 24568999999999999999998876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc----------------ccccccCCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV----------------DLDQVGLPIP--SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~ 273 (337)
.+. ... ...........+.......+++|+|||++... .+..+...+. ...
T Consensus 251 ~f~----~~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFV----EMF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHH----HHh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111 100 01111222233444456778999999997431 0122221111 112
Q ss_pred CCCcEEEEeeCChhHHh-hc----cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 274 SVSNKVVFTTREFGVCG-QM----EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
.+ -.||.||...+... .+ .-...+.++..+.++-.++|+.++..
T Consensus 320 ~~-ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 320 KG-VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CC-eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 33 45666666544322 11 12367889999999999999888754
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=9.9e-05 Score=70.63 Aligned_cols=167 Identities=10% Similarity=0.093 Sum_probs=90.1
Q ss_pred CccccchhhHHHHHHHHhcCCCe-EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|...+..++.+ .+.++|+.|+||||+|+.+.+...-. ...+. .+.........+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~-~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE-QGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC-CCCCC-------CCCcccHHHHHHhhcCC
Confidence 45899999999999998776554 66899999999999999998876211 11000 00000000111111000
Q ss_pred CCC---ccccCCCHHHHHHHHHHH----hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhh-
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKI----LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQ- 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~- 291 (337)
... +.......++....+... ..+++-++|+|+++... ....++..+..-... +++|++|.+. .+...
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~-t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY-VKFILATTDPLKLPATI 164 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc-eEEEEEECChhhCchHH
Confidence 000 000001122222222110 11455689999997653 233443333322334 6777766553 22211
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
.+....+++.+++.++....+.+.+...
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHHHc
Confidence 1234688999999999999888766443
No 109
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=8.6e-05 Score=72.77 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
..++|.+.....|..++..++ .+.+.++|..|+||||+|+.++....- ....... ..........+.+....+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c--~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC--LNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC--CCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 357999999999999988764 367889999999999999999988731 1111000 011112223333332221
Q ss_pred CCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... ........+.. +.+...+ .+++-++|+|+++... .+..+...+..-... +.+|++|.+ ..+...
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~-tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR-VVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcC-eEEEEEeCChhhhhHH
Confidence 100 00011122222 2222222 2455689999998652 344454444332233 555555543 333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+ +....+++.+++.++....+.+.+..
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 2 23457888899999888877776543
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=4.6e-05 Score=65.72 Aligned_cols=143 Identities=18% Similarity=0.220 Sum_probs=82.4
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
.+|+|.++..+++.=.+.. ...--+.++|++|.||||||..+++.+ ...+.. .-.+...-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~----tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKI----TSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEe----cccccccChhhHHHHH
Confidence 4689999888887655542 356789999999999999999999988 223221 1111111111112222
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc---------cccccCCC-CCCCCCCcE----------
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD---------LDQVGLPI-PSRTSVSNK---------- 278 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~l~~~l-~~~~~g~s~---------- 278 (337)
..+ ...=+|.+|+++.... ++++..-+ -..+++ +|
T Consensus 99 t~L------------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~-Arsv~ldLppFT 153 (332)
T COG2255 99 TNL------------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPA-ARSIRLDLPPFT 153 (332)
T ss_pred hcC------------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCc-cceEeccCCCee
Confidence 222 1223566777764311 11111100 011112 23
Q ss_pred -EEEeeCChhHHhhcc--CCceeecCCCCHHHHHHHHhHhhCC
Q 045709 279 -VVFTTREFGVCGQME--AHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 279 -IiiTtr~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
|=-|||.-.+...+. ..-+.+++-.+.+|-.+...+.+..
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI 196 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH
Confidence 335899766654443 2346789999999999999988843
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.1e-05 Score=72.95 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=89.2
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+++..++ .+.+.++|+.|+||||+|+.++....- ..... ...+....... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC-~~~~~---------~~~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC-SHKTD---------LLEPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc-cccCC---------CCCchhHHHHh---hc
Confidence 357999999999999998765 456789999999999999999887621 11000 00000000000 01
Q ss_pred CCCccc-----cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEE-EeeCChhHH
Q 045709 223 LFNESW-----KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVV-FTTREFGVC 289 (337)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Ii-iTtr~~~v~ 289 (337)
...+-. .....++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+-.-... +.+| +|+....+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~-tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH-VIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc-eEEEEEcCChhhhh
Confidence 100000 0011222 22233322 256669999999754 2344443333222233 4544 454444443
Q ss_pred hh-ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 290 GQ-MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 290 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.. .+....+.+.+++.++....+...+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 32 23346899999999999988887653
No 112
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00025 Score=70.01 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=65.6
Q ss_pred CccccchhhHHHHHHHHhc---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 214 (337)
..++|.++.+..+.+.+.. .+.......|+.|+|||.||+.++..+. +.-+..+-++ +.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~D------MSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRID------MSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeec------hHHHH
Confidence 3589999999999888753 1446777899999999999999998883 2223333333 33333
Q ss_pred HH-HHHHhCCCCccccCCCHHHHHHHHHHHhcCCcE-EEEEecCCCc
Q 045709 215 ES-IAKKIGLFNESWKNKSMQEKAQEIFKILSKKKF-VLLLDDIWEL 259 (337)
Q Consensus 215 ~~-i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 259 (337)
.. -.+.|-...+..-..+. -..|-+.++.++| +|+||+++..
T Consensus 562 EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 22 22333333332222211 3446667778888 7778999753
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=0.0015 Score=66.78 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhc-------C--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME-------E--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..++.+...+.. + +..++.++|++|+|||+||+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999998888887752 1 12478899999999999999998876
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.04 E-value=2.4e-05 Score=71.88 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc--EEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD--FVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
....+.|+|..|.|||.|++.+.+.. ..... .++++ +.......++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 37889999999999999999999988 23333 34443 233444444444321 1233444
Q ss_pred HHhcCCcEEEEEecCCCccc---cc-cccCCCCC-CCCCCcEEEEeeCC---------hhHHhhccCCceeecCCCCHHH
Q 045709 242 KILSKKKFVLLLDDIWELVD---LD-QVGLPIPS-RTSVSNKVVFTTRE---------FGVCGQMEAHRSFKVECLRYDD 307 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~---~~-~l~~~l~~-~~~g~s~IiiTtr~---------~~v~~~~~~~~~~~l~~L~~~e 307 (337)
+.. .-=+|++||++-... |+ .+...|.. ..+| ..||+|++. +.+.+.+..+-++.+.+.+.+.
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 444 334899999976422 22 22111211 1234 589999964 3345556667889999999999
Q ss_pred HHHHHhHhhCCCCCCCCCC
Q 045709 308 AWKLFEQKVGADTLDSHPD 326 (337)
Q Consensus 308 a~~Lf~~~~~~~~~~~~~~ 326 (337)
...++.+++.......+++
T Consensus 249 r~aiL~kka~~~~~~i~~e 267 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDE 267 (408)
T ss_pred HHHHHHHHHHhcCCCCCHH
Confidence 9999999886655445543
No 115
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00011 Score=69.69 Aligned_cols=165 Identities=18% Similarity=0.190 Sum_probs=93.2
Q ss_pred ccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 145 TVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
++=|.+..+.++.+++.. ...+-|.++|++|+|||.||+.++++. .-.| +.++-+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch-----
Confidence 456788888888777642 245678899999999999999999988 3333 222221
Q ss_pred HHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCC---CC-CCCC
Q 045709 213 IQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPI---PS-RTSV 275 (337)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~-~~~g 275 (337)
+|+... ...+.+.+.+.+.+....-+|++++|+++-... ..++...+ .. ...|
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122211 233444444444455567899999999975311 11221111 11 1123
Q ss_pred CcEEEE--eeCChhHHhhc---c-CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 276 SNKVVF--TTREFGVCGQM---E-AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 276 ~s~Iii--Ttr~~~v~~~~---~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
...++| |+|...+-..+ + -.+.|.+.--++..-.+++...+-+-....+-++..||+
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence 123343 56655543222 2 235677776677766677766664333333445555554
No 116
>PRK08181 transposase; Validated
Probab=98.03 E-value=0.00018 Score=63.15 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=57.2
Q ss_pred HHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHH
Q 045709 158 RCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKA 237 (337)
Q Consensus 158 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 237 (337)
+|+. +...+.++|++|+|||.||..+.+... .....+.|++ ..+++..+.... ...+....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVAR-------RELQLESA- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHH-------hCCcHHHH-
Confidence 4543 445689999999999999999998773 2233445553 344555554322 11122222
Q ss_pred HHHHHHhcCCcEEEEEecCCCc--ccc-c-cccCCCCCCCCCCcEEEEeeCCh
Q 045709 238 QEIFKILSKKKFVLLLDDIWEL--VDL-D-QVGLPIPSRTSVSNKVVFTTREF 286 (337)
Q Consensus 238 ~~l~~~l~~k~~LlVlDdv~~~--~~~-~-~l~~~l~~~~~g~s~IiiTtr~~ 286 (337)
.+.+ .+.-||||||+... ..+ . .+...+.....+ ..+||||...
T Consensus 162 ---l~~l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 162 ---IAKL-DKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred ---HHHH-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 2222 23459999999643 111 1 122222211122 4688888753
No 117
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=7.3e-05 Score=72.93 Aligned_cols=164 Identities=10% Similarity=0.105 Sum_probs=88.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|.+++..++. +.+.++|+.|+||||+|+.+.+...- ...... ...........|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 4589999999999999887654 56789999999999999999887621 111100 00011111111111000
Q ss_pred CCC---ccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEee-CChhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTT-REFGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~~ 291 (337)
... +.......++ ++.+...+ .++.-++|+|+++... ..+.+...+..-... +.+|++| ....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~-~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH-VKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC-eEEEEEeCChhhhhHH
Confidence 000 0000111122 22233222 2445589999997653 233443333222233 5665544 44444432
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+ +....+++.+++.++....+...+.
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHH
Confidence 2 2345788999999988888776654
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.01 E-value=0.0001 Score=74.67 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=84.9
Q ss_pred CccccchhhHHHHHHHHhc------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
.+++|.++.++.|.+++.. .+.+++.++|++|+|||++|+.+++.. ...|-.+ +++...+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~i---~~~~~~~~~~i~--- 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVRF---SLGGVRDEAEIR--- 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEEE---eCCCcccHHHHc---
Confidence 4578999888888886632 245689999999999999999999987 3344222 222222222221
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc---------cccccC-----CCCCC-------CCCC
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD---------LDQVGL-----PIPSR-------TSVS 276 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~~~l~~-----~l~~~-------~~g~ 276 (337)
.....+.........+.+.... .++-+++||+++.... +-++.. .|.+. ..+
T Consensus 391 -----g~~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~- 463 (775)
T TIGR00763 391 -----GHRRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK- 463 (775)
T ss_pred -----CCCCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCC-
Confidence 1111111112223333333332 3334789999975421 111110 11111 122
Q ss_pred cEEEEeeCChh-HH-hhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 277 NKVVFTTREFG-VC-GQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 277 s~IiiTtr~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.-+|.||.... +. ...+....+.+.+++.++-.+++.++.
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 34444554332 11 112233578999999999888887654
No 119
>PRK08116 hypothetical protein; Validated
Probab=98.00 E-value=1e-05 Score=71.18 Aligned_cols=102 Identities=25% Similarity=0.207 Sum_probs=58.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS 245 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (337)
..+.++|.+|+|||.||..+++... .....+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999983 2234456664 3445555555443211 111 222334444
Q ss_pred CCcEEEEEecCCC--cccccc--ccCCCCC-CCCCCcEEEEeeCCh
Q 045709 246 KKKFVLLLDDIWE--LVDLDQ--VGLPIPS-RTSVSNKVVFTTREF 286 (337)
Q Consensus 246 ~k~~LlVlDdv~~--~~~~~~--l~~~l~~-~~~g~s~IiiTtr~~ 286 (337)
+-. ||||||+.. ..+|.. +...+.. ..++ ..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKG-LPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCC-CCEEEECCCC
Confidence 333 899999943 334432 2111111 1234 6788888753
No 120
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.98 E-value=2.2e-05 Score=67.18 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=31.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (337)
.-.++|+|.+|+|||||+..+.... ...|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 3467899999999999999999887 678888777754
No 121
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=7.2e-05 Score=76.06 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=39.8
Q ss_pred cccchhhHHHHHHHHhc---CCCeEEEEEecCCCcHHHHHHHHHHhhc
Q 045709 146 VVGLQLTFDRVWRCLME---EHAGIVGLYGMGGVGKTTLLTQINNRFF 190 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 190 (337)
++||+.+++.|...+.. ....++.+.|.+|||||+|++.|.....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~ 49 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT 49 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence 68999999999888864 4667999999999999999999998873
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.0002 Score=69.40 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=91.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..|.+++.+++. +.+.++|+.|+||||+|+.+++...- ...... ..+.. ......+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c-~~~~~~---~pC~~----C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC-VNGPTP---MPCGE----CSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc-ccCCCC---CCCcc----chHHHHHHcCCC
Confidence 4589999999999999987654 46889999999999999999887621 111100 00000 011111111100
Q ss_pred CCC---ccccCCCHHHHHHHHHHH-----hcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCC-hhHHhh
Q 045709 223 LFN---ESWKNKSMQEKAQEIFKI-----LSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQ 291 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~ 291 (337)
... +.......++..+ +.+. ..+++-++|+|+++... .++.+...+..-... +.+|++|.+ ..+...
T Consensus 88 ~dv~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~-~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY-IVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC-EEEEEecCChHHhHHH
Confidence 000 0000112222222 2211 23566689999997653 345554444433344 666665543 333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+ +....+++.+++.++....+.+.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~ 193 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLE 193 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHH
Confidence 2 23457899999999998888877643
No 123
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=6.9e-05 Score=64.56 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=40.3
Q ss_pred ccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEE
Q 045709 145 TVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW 201 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 201 (337)
.+.++......+..++.+ ..++.+.|..|+|||+||..+..+... ...|..++.
T Consensus 56 ~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEE
Confidence 356788888888888865 359999999999999999999886411 244554443
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.95 E-value=0.00011 Score=74.07 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhc-------C--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME-------E--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..++.+.+.+.. + ...++.++|++|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578988888888887752 1 23468899999999999999998876
No 125
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.94 E-value=9.4e-05 Score=68.87 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=83.6
Q ss_pred chhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc
Q 045709 149 LQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNES 227 (337)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 227 (337)
|...+.++.+.+..... ++.|+|+-++|||||++.+.... ... .++++..+.. +-.++ .
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~------------ 81 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-L------------ 81 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-H------------
Confidence 33445555555543333 99999999999999997776665 222 5555433221 11111 1
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh-----hc-cCCceeecC
Q 045709 228 WKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG-----QM-EAHRSFKVE 301 (337)
Q Consensus 228 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~-----~~-~~~~~~~l~ 301 (337)
+....+...-..++.+++||+|+...+|......+.+..+. +|++|+-+..+.. .+ +....+++.
T Consensus 82 -------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 82 -------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred -------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 11111111111277899999999999999887777765444 7888887765532 22 234578999
Q ss_pred CCCHHHHHH
Q 045709 302 CLRYDDAWK 310 (337)
Q Consensus 302 ~L~~~ea~~ 310 (337)
|||..|-..
T Consensus 153 PlSF~Efl~ 161 (398)
T COG1373 153 PLSFREFLK 161 (398)
T ss_pred CCCHHHHHh
Confidence 999999865
No 126
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.94 E-value=0.00012 Score=59.44 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=71.8
Q ss_pred cchhhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCC-----------------CcEEEEEEecCccC
Q 045709 148 GLQLTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-----------------FDFVIWVVVSRDLQ 209 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~~~~~~ 209 (337)
|.+...+.|.+.+.+++. ..+.++|+.|+||+++|..+.+...-.... .....|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 556777888888877654 468999999999999999998876321111 1122222221110
Q ss_pred HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEe
Q 045709 210 LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFT 282 (337)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiT 282 (337)
.....++. ..+...+ .++.=++|||+++.. .....++..+-.-... +.+|++
T Consensus 80 -------------------~~i~i~~i-r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~-~~fiL~ 138 (162)
T PF13177_consen 80 -------------------KSIKIDQI-REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPEN-TYFILI 138 (162)
T ss_dssp -------------------SSBSHHHH-HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTT-EEEEEE
T ss_pred -------------------chhhHHHH-HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCC-EEEEEE
Confidence 01122222 2333333 235669999999875 2334443333222345 888888
Q ss_pred eCChh-HHhhc-cCCceeecCCCC
Q 045709 283 TREFG-VCGQM-EAHRSFKVECLR 304 (337)
Q Consensus 283 tr~~~-v~~~~-~~~~~~~l~~L~ 304 (337)
|.+.+ +...+ +....+.+.+||
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 88755 33322 334567777764
No 127
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00032 Score=68.19 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=90.2
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+.....|.+++..++ .+.+.++|+.|+||||+|+.+..... -....+ ..+.+.......|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 458999999999999998764 45678899999999999999987662 111100 001111112222221111
Q ss_pred CCCccc---cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEee-CChhHHhh
Q 045709 223 LFNESW---KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTT-REFGVCGQ 291 (337)
Q Consensus 223 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTt-r~~~v~~~ 291 (337)
...-.. .....+ ..+.+.... .++.-++|+|+++.. ..+..+...+..-... ..+|++| ....+...
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~-~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH-VIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC-eEEEEEeCChhhCcHH
Confidence 000000 111122 222233322 345668899999865 2344443333322233 4555444 44333322
Q ss_pred c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 ~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+ +....+.+.+++.++....+...+-.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~ 193 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDK 193 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHH
Confidence 2 23457889999999998888877643
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=97.93 E-value=3.1e-05 Score=63.19 Aligned_cols=36 Identities=33% Similarity=0.593 Sum_probs=28.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEE
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIW 201 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 201 (337)
..|.|+|++|+||||||+.+++...-.-.+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999988322245776765
No 129
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00035 Score=67.57 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=90.5
Q ss_pred CccccchhhHHHHHHHHhc------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
.+-+|-++..++|++.|.- -+.+++.+||++|+|||+|++.++.-. ...|-. ++++.-.+..++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIR--- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIR--- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhc---
Confidence 4458999999999998842 257899999999999999999999988 344422 2333333333321
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc---------c---------ccccCC---CCCCCCCC
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD---------L---------DQVGLP---IPSRTSVS 276 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---------~---------~~l~~~---l~~~~~g~ 276 (337)
.+....-..=+....+-+.+. +.++-+++||+++.... + ..|... ++-. =
T Consensus 394 -----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD--L- 464 (782)
T COG0466 394 -----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD--L- 464 (782)
T ss_pred -----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc--h-
Confidence 111111111122233333332 45677899999875311 1 111111 1111 1
Q ss_pred cEE-EEeeCCh-h-H-HhhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 277 NKV-VFTTREF-G-V-CGQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 277 s~I-iiTtr~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
|.| .|||-|. + + ...++.-.+|++.+.+++|-.++-+++..
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 344 3455442 2 2 23334457899999999999888877763
No 130
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.86 E-value=0.0014 Score=59.35 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (337)
....+.++|.+|+|||+||..+++... .....++|+++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 347799999999999999999999883 22335666654
No 131
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.85 E-value=0.00016 Score=72.87 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=81.8
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|.+..++.|.+.+.. ...+.+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999998888777632 234678899999999999999999877 2332 222211
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCCCCC-CCCCc
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPIPSR-TSVSN 277 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~-~~g~s 277 (337)
.+. ... .......+...+.......+.+|+|||++.... ...+...+... ..+ .
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~-~ 314 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG-R 314 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC-C
Confidence 111 000 111112222233333456678999999865310 11122112111 123 3
Q ss_pred EEEE-eeCChh-HHhhcc----CCceeecCCCCHHHHHHHHhHhhC
Q 045709 278 KVVF-TTREFG-VCGQME----AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 278 ~Iii-Ttr~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.++| ||.... +...+. -...+.++..+.++-.+++....-
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 4444 444332 211111 234678888899988888886553
No 132
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00064 Score=63.53 Aligned_cols=126 Identities=24% Similarity=0.224 Sum_probs=79.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH--
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF-- 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-- 241 (337)
+...+.+.|++|+|||+||..++... .|+.+--++ ++++ -..+.......+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiS------pe~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIIS------PEDM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeC------hHHc---------------cCccHHHHHHHHHHH
Confidence 45677889999999999999997654 555433221 1111 1222233333333
Q ss_pred --HHhcCCcEEEEEecCCCccccccccCCCCC------------CC-CCCcEE--EEeeCChhHHhhcc----CCceeec
Q 045709 242 --KILSKKKFVLLLDDIWELVDLDQVGLPIPS------------RT-SVSNKV--VFTTREFGVCGQME----AHRSFKV 300 (337)
Q Consensus 242 --~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~------------~~-~g~s~I--iiTtr~~~v~~~~~----~~~~~~l 300 (337)
..-+..--.||+||++...+|-.+++.|.+ .. .| -|. +-||....+...|+ -...|++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 344566679999999998888777655432 11 23 444 34666677777665 2457899
Q ss_pred CCCCH-HHHHHHHhHhh
Q 045709 301 ECLRY-DDAWKLFEQKV 316 (337)
Q Consensus 301 ~~L~~-~ea~~Lf~~~~ 316 (337)
+.++. ++..+.++..-
T Consensus 670 pnl~~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELN 686 (744)
T ss_pred CccCchHHHHHHHHHcc
Confidence 99987 77777776543
No 133
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.84 E-value=0.00026 Score=67.40 Aligned_cols=165 Identities=18% Similarity=0.120 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHh-------c---CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLM-------E---EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~-------~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 213 (337)
.++-|.+..++.+..... . ...+-|.++|++|+|||.+|+.+++.. ...|-. ++.+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~---l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLR---LDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEE---EEhH------Hh
Confidence 346676665555543211 0 235678999999999999999999987 333311 1111 11
Q ss_pred HHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc--------------cccccCCCCCCCCCCcEE
Q 045709 214 QESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD--------------LDQVGLPIPSRTSVSNKV 279 (337)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~g~s~I 279 (337)
. ... ...+...+.+.+...-...+++|+||+++.... ...+...+.....+ --|
T Consensus 296 ~----~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~-V~v 363 (489)
T CHL00195 296 F----GGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP-VFV 363 (489)
T ss_pred c----ccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc-eEE
Confidence 1 100 111122222222222235789999999974311 00111111112223 345
Q ss_pred EEeeCChhHH-hhc----cCCceeecCCCCHHHHHHHHhHhhCCCCC--CCCCChHHHHH
Q 045709 280 VFTTREFGVC-GQM----EAHRSFKVECLRYDDAWKLFEQKVGADTL--DSHPDIPELAE 332 (337)
Q Consensus 280 iiTtr~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~--~~~~~l~~i~~ 332 (337)
|.||.+.... ..+ .-+..+.++.-+.++-.++|..+...... ..+.++..+++
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~ 423 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSK 423 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHh
Confidence 5566554321 111 23467888888999999999988754321 12345555554
No 134
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.84 E-value=0.00024 Score=71.57 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=88.4
Q ss_pred CCccccchhhHHHHHHHHhc------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQES 216 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 216 (337)
+.+.+|.++.++.|+++|.. ....++.++|++|+||||+++.++... ...|-. ++.+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 45579999999999988752 246789999999999999999999876 333322 223332233222111
Q ss_pred HHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc------cccccCCC---------------CCCCCC
Q 045709 217 IAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD------LDQVGLPI---------------PSRTSV 275 (337)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l---------------~~~~~g 275 (337)
-.. +.........+.+... ....-+++||+++.... ...+...+ +.....
T Consensus 395 ~~~--------~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRT--------YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhc--------cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 000 0111112233333322 22345788999975421 11111111 111123
Q ss_pred CcEEEEeeCChhHHhh-ccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 276 SNKVVFTTREFGVCGQ-MEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.-+|.|+.+..+... .+....+.+.+++.+|-.++.+++..
T Consensus 466 -v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 -VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred -eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 444455544333211 12336789999999999888877764
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.83 E-value=0.00038 Score=70.27 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=91.6
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|.+..++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 457777777777665431 134558899999999999999999987 3333 22221 1
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc--------------cccccCCCCC--CCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD--------------LDQVGLPIPS--RTSV 275 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~--~~~g 275 (337)
++ +... ...+...+...+...-...+++|+||+++.... ...+...+.. ...+
T Consensus 522 ~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11 1111 111222222222233345689999999974310 1112111211 1123
Q ss_pred CcEEEEeeCChhHHhh--c---cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 276 SNKVVFTTREFGVCGQ--M---EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
--||.||...+.... . .....+.++..+.++-.++|+.+........+.++..+++.
T Consensus 591 -v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~ 652 (733)
T TIGR01243 591 -VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEM 652 (733)
T ss_pred -EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 445556655443221 1 13467889999999999999877654433334456666653
No 136
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.82 E-value=0.0003 Score=72.00 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=39.0
Q ss_pred CCccccchhhHHHHHHHHhcC---------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLMEE---------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.+..++.+...+... ...++.++|++|+|||++|+.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 355899999999998888541 24578899999999999999999877
No 137
>PF14516 AAA_35: AAA-like domain
Probab=97.82 E-value=0.0016 Score=59.33 Aligned_cols=169 Identities=12% Similarity=0.164 Sum_probs=94.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-----cCHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-----LQLEKIQESI 217 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i 217 (337)
.+..|+|...-+.+.+.|..+ ...+.|.|+-.+|||+|...+.+... +..+ .++++++..- .+....+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 355688986666677666543 67899999999999999999998882 2333 4557775542 2455545444
Q ss_pred H----HHhCCCCcc---c--cCCCHHHHHHHHHHHh---cCCcEEEEEecCCCcccc----ccc----cCCCCC---C-C
Q 045709 218 A----KKIGLFNES---W--KNKSMQEKAQEIFKIL---SKKKFVLLLDDIWELVDL----DQV----GLPIPS---R-T 273 (337)
Q Consensus 218 ~----~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~----~~l----~~~l~~---~-~ 273 (337)
+ .+++....- + ...+.......+.+.+ .+++.+|+||+++..... +++ +..... . .
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4 455443210 0 0112223333344432 268999999999865321 111 110000 0 0
Q ss_pred CCCcEEEEeeCCh--hH-----HhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 274 SVSNKVVFTTREF--GV-----CGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 274 ~g~s~IiiTtr~~--~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
-. +-.++...+. .. .+.++....+.|++++.+|...|+.++-
T Consensus 166 ~~-~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 166 WQ-KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cc-eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 01 1112222211 11 1112334678999999999999998764
No 138
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.81 E-value=0.00021 Score=65.00 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=64.0
Q ss_pred HHHHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcE-EEEEEecC-ccCHHHHHHHHHHHhCCCCcccc
Q 045709 153 FDRVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSR-DLQLEKIQESIAKKIGLFNESWK 229 (337)
Q Consensus 153 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~ 229 (337)
..++++.+.. .....+.|+|.+|+|||||++.+++... .++-+. ++|+.+.+ ...+.++.+.+...+........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446666654 3556779999999999999999998772 223333 46666654 44677888888776654321101
Q ss_pred CCC---HHHHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 230 NKS---MQEKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 230 ~~~---~~~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
... .......+.+.+ +++..+||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111 111112222222 58999999999863
No 139
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.81 E-value=0.00073 Score=65.17 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=104.7
Q ss_pred CCccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhcc--CCCCCc--EEEEEEecCccCHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFD--TPNHFD--FVIWVVVSRDLQLEKI 213 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~~f~--~~~wv~~~~~~~~~~~ 213 (337)
+..+-+|+.+..+|...+.. .....+-|.|.+|+|||..+..|.+.+.. .++.-+ ..+.++.-.-..+.++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 44577899999999888754 23458999999999999999999986631 122222 2344555555678999
Q ss_pred HHHHHHHhCCCCccccCCCHHHHHHHHHHHhc-----CCcEEEEEecCCCccc--cccccCCCCC-CCCCCcEEEEeeC-
Q 045709 214 QESIAKKIGLFNESWKNKSMQEKAQEIFKILS-----KKKFVLLLDDIWELVD--LDQVGLPIPS-RTSVSNKVVFTTR- 284 (337)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~l~~-~~~g~s~IiiTtr- 284 (337)
...|...+.... .........|..+.. .+.++|++|+++.... -+-+...|.+ ...+ |+++|.+=
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~-sKLvvi~Ia 548 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN-SKLVVIAIA 548 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC-CceEEEEec
Confidence 999999997643 233344444544443 4578999998875422 1111111221 1234 67665442
Q ss_pred Ch----------hHHhhccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 285 EF----------GVCGQMEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 285 ~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+. .+++.++ ...+.+.|.+.++-.++...+..+-
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch
Confidence 21 1222222 2457788888888777777776544
No 140
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00055 Score=61.65 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=94.0
Q ss_pred ccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCC------------CCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTP------------NHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~~~~~~~~ 211 (337)
+++|.+.....+.+.+..++ .+...++|+.|+||+++|..+.....-.. ...+-..|+.-.....-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 57999999999999988776 47999999999999999999887752111 112223343211000000
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTR 284 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr 284 (337)
.+-...+...+...........+ ..+.+.+.+ .+++-++|+|+++... ....+...+-.-. . +.+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~~ 161 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIAP 161 (314)
T ss_pred ccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEEC
Confidence 00001111111100000111122 233444444 3556799999997653 2333333232212 3 45555554
Q ss_pred C-hhHHhhc-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 285 E-FGVCGQM-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 285 ~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+ ..+...+ +....+++.+++.++..+.+.+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc
Confidence 4 3333322 3346889999999999999998753
No 141
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00039 Score=63.17 Aligned_cols=161 Identities=6% Similarity=0.007 Sum_probs=85.4
Q ss_pred cccc-chhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 145 TVVG-LQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 145 ~~vG-r~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.++| .+..++.|.+.+..++ .+.+.++|+.|+||||+|+.+.+...- ....... ..........+.....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 3566 6667778888877665 456799999999999999999887621 1111100 0000111111111000
Q ss_pred CC----CccccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCChh-HHh
Q 045709 223 LF----NESWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREFG-VCG 290 (337)
Q Consensus 223 ~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~ 290 (337)
.. ...-.....++.. .+.+.+ .+.+-++|+|+++.... .+.+...+..-..+ +.+|++|.+.. +..
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~-~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG-TTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC-ceEEEEeCChHhCcH
Confidence 00 0000111122222 222222 24556899999876532 33343333332334 67777776533 333
Q ss_pred hc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 291 QM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 291 ~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
.+ +....+++.+++.++..+.+...
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 23467899999999998888654
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=0.00031 Score=59.88 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHH----HhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRC----LMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-..++|.+...+.|.+- +...+..-+.++|..|+|||+|++.+.+.+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 35689998888777554 333467788999999999999999999988
No 143
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.78 E-value=0.00014 Score=60.19 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=68.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC--ccCHHHH------HHHHHHHhCCCC---ccccCC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKI------QESIAKKIGLFN---ESWKNK 231 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~---~~~~~~ 231 (337)
.+..+++|+|.+|+|||||++.++... ......+++.-.+ ..+.... ..++++.++... ......
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 356799999999999999999998765 2233333332111 1111111 122455555432 111334
Q ss_pred CHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccCCCCCC-CC-CCcEEEEeeCChhHHh
Q 045709 232 SMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSR-TS-VSNKVVFTTREFGVCG 290 (337)
Q Consensus 232 ~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~-~~-g~s~IiiTtr~~~v~~ 290 (337)
+..+..+ .+...+...+-++++|+.-...+. ..+...+... .. + ..||++|++.....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sh~~~~~~ 162 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-KTVVMVLHDLNLAA 162 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH
Confidence 4443333 355667778899999998654332 2222222111 12 5 78899999877643
No 144
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.77 E-value=0.00015 Score=62.29 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH----hCCCCccccCCCHHH---H
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK----IGLFNESWKNKSMQE---K 236 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~ 236 (337)
...++.|+|.+|+|||+|+.+++.... .....++|++.. .++...+. +++.. +.....-....+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 567999999999999999999988772 334678899887 45544432 23322 000000001223323 3
Q ss_pred HHHHHHHhcCCcEEEEEecCC
Q 045709 237 AQEIFKILSKKKFVLLLDDIW 257 (337)
Q Consensus 237 ~~~l~~~l~~k~~LlVlDdv~ 257 (337)
.+.+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 334444444677799999984
No 145
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00011 Score=63.11 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC-------------CCcEEEEEEecC----cc--CH-------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-------------HFDFVIWVVVSR----DL--QL------------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------~f~~~~wv~~~~----~~--~~------------- 210 (337)
....+++|+|++|.|||||.+.+..-.....+ .-..+.||.-.. .+ ++
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g 107 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG 107 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccc
Confidence 35689999999999999999999874311110 012455654211 00 11
Q ss_pred ---------HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCc------cccccccCCCCC
Q 045709 211 ---------EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWEL------VDLDQVGLPIPS 271 (337)
Q Consensus 211 ---------~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~l~~ 271 (337)
.+...+.++..+... ......|..+.++. |.+.|..++=||+||+--.. ..+-++...+..
T Consensus 108 ~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 108 WFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred ccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 234445555555432 22345565555554 66788999999999975433 223333333332
Q ss_pred CCCCCcEEEEeeCChhHHh
Q 045709 272 RTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~ 290 (337)
.| +.||++|.+-+...
T Consensus 188 --eg-~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 --EG-KTVLMVTHDLGLVM 203 (254)
T ss_pred --CC-CEEEEEeCCcHHhH
Confidence 26 89999999866543
No 146
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.0015 Score=62.03 Aligned_cols=26 Identities=38% Similarity=0.774 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|.+|+||||++..+...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988766
No 147
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=9.1e-05 Score=72.33 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHHhcC-----CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEE-----HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+++|.++.+..+..++... ...++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999888652 34679999999999999999998866
No 148
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.75 E-value=0.00093 Score=58.71 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=34.2
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHH
Q 045709 152 TFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 152 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 213 (337)
.++++..++.. ...+.+.|.+|+|||+||+.+.... ... ...+++....+..++
T Consensus 10 l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l---g~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR---DRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh---CCC---EEEEeCCccCCHHHH
Confidence 34455555543 3456699999999999999998754 222 344555554444444
No 149
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.74 E-value=0.00016 Score=60.55 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=51.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCccc-cCCCHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNESW-KNKSMQEKAQEIFK 242 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 242 (337)
++++.++|+.|+||||.+.+++..+. ..-..+..++.... ....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47899999999999998888888772 22445666776432 234455667777777542111 12234444433333
Q ss_pred HhcCC-cEEEEEecC
Q 045709 243 ILSKK-KFVLLLDDI 256 (337)
Q Consensus 243 ~l~~k-~~LlVlDdv 256 (337)
.+..+ .=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 33332 336667754
No 150
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00052 Score=65.71 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
...+-|.++|+||+|||++|+.+++.. ...|-. ++. .+++. .. -+.+...+.+.+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFls-----vkg----pEL~s----k~-------vGeSEr~ir~iF~k 522 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLS-----VKG----PELFS----KY-------VGESERAIREVFRK 522 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh---cCCeee-----ccC----HHHHH----Hh-------cCchHHHHHHHHHH
Confidence 357789999999999999999999987 455532 221 11111 11 12222333333333
Q ss_pred HhcCCcEEEEEecCCCccc-------------cccccCCCCCCCCCCcEEEE---eeCChhHHh-hcc---CCceeecCC
Q 045709 243 ILSKKKFVLLLDDIWELVD-------------LDQVGLPIPSRTSVSNKVVF---TTREFGVCG-QME---AHRSFKVEC 302 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~g~s~Iii---Ttr~~~v~~-~~~---~~~~~~l~~ 302 (337)
.=+--+++|.||+++...- +.++..-+...... ..|+| |.|...+-. .+. -+..+.+++
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~-k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVpl 601 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL-KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPL 601 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc-CcEEEEeccCChhhcCHHHcCCcccceeEeecC
Confidence 3344678999999875411 22222222222222 23333 444444322 222 346778888
Q ss_pred CCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 303 LRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 303 L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
-+.+--.++|+.++-.-.....-++.++++.
T Consensus 602 PD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 602 PDLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred ccHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 8888889999999865544455678888763
No 151
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.73 E-value=0.00021 Score=58.87 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc------------ccC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES------------WKN 230 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------~~~ 230 (337)
....+++|.|.+|+|||||++.+..... .....+++.-. ++......+...++.-.+. ...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~ 98 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK----PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRR 98 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhccc
Confidence 3567899999999999999999987652 12223333211 1111111111111110000 122
Q ss_pred CCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 231 KSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 231 ~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
.+..+..+ .+...+-.++-+++||+..+..+. +.+...+.....+ ..||++|++...... .++.+.+
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHHh--CCEEEEE
Confidence 33333332 355666678889999998765332 1111111111235 789999998876642 3455444
No 152
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.73 E-value=0.00052 Score=58.86 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=58.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC------cEEEEEEecCccCHHHHHHHHHHHhCCCCc----c---ccC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF------DFVIWVVVSRDLQLEKIQESIAKKIGLFNE----S---WKN 230 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~ 230 (337)
...++.|+|.+|+|||+|+..++.... ... ..++|++....++...+. .+....+.... . ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 568999999999999999999987652 222 567899887776665543 33333222110 0 122
Q ss_pred CCHHHHHHHHHHHhc----CCcEEEEEecCCC
Q 045709 231 KSMQEKAQEIFKILS----KKKFVLLLDDIWE 258 (337)
Q Consensus 231 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 258 (337)
.+.++....+..... .+.-|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 345555555555442 3556999999854
No 153
>PRK07261 topology modulation protein; Provisional
Probab=97.71 E-value=0.0002 Score=58.70 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 154
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.71 E-value=0.00025 Score=60.03 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHh-CCCCcc---ccCCCHH---HH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKI-GLFNES---WKNKSMQ---EK 236 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~~~~~---~~~~~~~---~~ 236 (337)
...++.|+|.+|+|||+|+.+++.... .....++|++... ++...+.+ ++... ...... ....+.. ..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 578999999999999999999887762 3456789999875 55555443 33221 000000 0112222 23
Q ss_pred HHHHHHHhcC-CcEEEEEecCCC
Q 045709 237 AQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 237 ~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
...+...+.. +.-+||+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHH
Confidence 4555555543 566999999854
No 155
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.70 E-value=0.00035 Score=56.89 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe---c----------------------------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV---S---------------------------------- 205 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~---------------------------------- 205 (337)
++...+.++|++|.|||||.+.+|.... .-...+|+.- +
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~----pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER----PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc----CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4678899999999999999999998762 1122333310 0
Q ss_pred --------CccCHHHHHHHHHHHhCCCCcc---ccCCCH-HHHHHHHHHHhcCCcEEEEEecC----CCccccccccCCC
Q 045709 206 --------RDLQLEKIQESIAKKIGLFNES---WKNKSM-QEKAQEIFKILSKKKFVLLLDDI----WELVDLDQVGLPI 269 (337)
Q Consensus 206 --------~~~~~~~~~~~i~~~l~~~~~~---~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~l~~~l 269 (337)
+.....+-....+...++.... +...+. ++..-.+.+.+-+++-+|+-|+- +....|+-+...-
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 0011222233333333432211 122232 33333466777789999999964 3334454442222
Q ss_pred CCCCCCCcEEEEeeCChhHHhhcc
Q 045709 270 PSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 270 ~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
.-+..| ..||++|.+..+...+.
T Consensus 182 einr~G-tTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLG-TTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcC-cEEEEEeccHHHHHhcc
Confidence 223456 99999999999877663
No 156
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.69 E-value=0.0012 Score=58.49 Aligned_cols=173 Identities=18% Similarity=0.223 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH-HHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL-EKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~ 218 (337)
..++|-.++..++..++.. ++..-+.|+|+.|.|||+|......+.+....+| +-|......-. .-.+..|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 3589999999998888864 4677888999999999999988877752223333 33444333221 22344455
Q ss_pred HHhCCCCcc--ccCCCHHHHHHHHHHHhc------CCcEEEEEecCCCccc-------cccccCCCCCCCCCCcEEEEee
Q 045709 219 KKIGLFNES--WKNKSMQEKAQEIFKILS------KKKFVLLLDDIWELVD-------LDQVGLPIPSRTSVSNKVVFTT 283 (337)
Q Consensus 219 ~~l~~~~~~--~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~g~s~IiiTt 283 (337)
.++...... ....+..+....+...|+ +-++++|+|+++--.. +.-+...-....+- |-|-+||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Pi-ciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPI-CIIGVTT 179 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCe-EEEEeec
Confidence 544322111 122334445555555553 2358889998864311 11111111123344 6667899
Q ss_pred CChh-------HHhhccCCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 284 REFG-------VCGQMEAHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 284 r~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
|-.. |-+.++-..++-+++++-++...++++...-+.
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v~~ 223 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSVPA 223 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcCCc
Confidence 8643 333333333567788999999999998875443
No 157
>PRK06526 transposase; Provisional
Probab=97.68 E-value=5.2e-05 Score=66.07 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 45678999999999999999998877
No 158
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.00059 Score=58.21 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH----hCCCCccccCCCHHHH---
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK----IGLFNESWKNKSMQEK--- 236 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~~--- 236 (337)
...++.|.|.+|+|||||+.+++... ...-..++|++....+. .-+.+++.. .....-.....+..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 57899999999999999999998877 23344677887655443 223333322 1100000112222232
Q ss_pred HHHHHHHhcCCcEEEEEecCCC
Q 045709 237 AQEIFKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 237 ~~~l~~~l~~k~~LlVlDdv~~ 258 (337)
...+...+..+.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~ 114 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATA 114 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHH
Confidence 2344444554567999998754
No 159
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.66 E-value=0.00026 Score=58.11 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccC--CC---CCc--EEEEEEecCccCHHHHHHHHHHHhCCCC----ccccCC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDT--PN---HFD--FVIWVVVSRDLQLEKIQESIAKKIGLFN----ESWKNK 231 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~ 231 (337)
....+++|+|++|+|||||.+.+......+ .. .|. .+.|+ .+ .+.+..++... ......
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcC
Confidence 356799999999999999999986421110 00 110 12232 11 34566666432 112333
Q ss_pred CHHHHHH-HHHHHhcCC--cEEEEEecCCCcccc---ccccCCCCC-CCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 232 SMQEKAQ-EIFKILSKK--KFVLLLDDIWELVDL---DQVGLPIPS-RTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 232 ~~~~~~~-~l~~~l~~k--~~LlVlDdv~~~~~~---~~l~~~l~~-~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
+..+..+ .+...+..+ +-+++||+.-+..+. ..+...+.. ...| ..||++|++.+.... ++.++.+
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG-NTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh--CCEEEEE
Confidence 4433332 244555566 789999987654332 122111211 1135 689999998876542 4455555
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00029 Score=70.53 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhc---------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME---------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.++.++.|...+.. .....+.++|++|+|||+||+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999888888752 124578899999999999999998876
No 161
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.65 E-value=0.00013 Score=61.03 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=62.4
Q ss_pred cchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc--c----CHHH-------HH
Q 045709 148 GLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--L----QLEK-------IQ 214 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~----~~~~-------~~ 214 (337)
.+..+....++.|. ...++.+.|++|+|||.||....-+. -..+.|+.++++.-.-+ . -+.+ .+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455566666666 45799999999999999999988766 23588888887752211 0 0011 11
Q ss_pred HHHHHHhCCCCccccCCCHHHHHHHH------HHHhcCC---cEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEee
Q 045709 215 ESIAKKIGLFNESWKNKSMQEKAQEI------FKILSKK---KFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTT 283 (337)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTt 283 (337)
.-+...+..-. .....+.+.+.- ..+++|+ ..++|+|++.+. .++..+.. ..+.+ |++|++=
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~-skii~~G 153 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEG-SKIIITG 153 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT--EEEEEE
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCC-cEEEEec
Confidence 11111221100 111122221100 1234454 469999999875 35555533 34566 9999986
Q ss_pred CChh
Q 045709 284 REFG 287 (337)
Q Consensus 284 r~~~ 287 (337)
-...
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 6433
No 162
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.65 E-value=0.00019 Score=64.38 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
..+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+.+++...+.. ...+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 568999999999999999999887772 334567788877655542 345555432211 233455556555
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 045709 241 FKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (337)
...++ +..-++|+|.+-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4567999998864
No 163
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.65 E-value=0.00018 Score=64.64 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=58.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
..+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+.+++...+.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 567999999999999999999887762 334567899887766543 344444432111 233456666666
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 045709 241 FKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (337)
...++ +..-++|+|.+-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 55554 4566999998753
No 164
>PRK09183 transposase/IS protein; Provisional
Probab=97.65 E-value=0.00011 Score=64.29 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+.|+|++|+|||+||..+.+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999998775
No 165
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00019 Score=60.20 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=41.3
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++||.++.++.+.-...+.+.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3589999999998887788889999999999999999999998887
No 166
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.64 E-value=0.0023 Score=60.12 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=125.9
Q ss_pred cchhhHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Q 045709 9 FTCDDTISRCLDCTVRKAGYVCNLQDNIRALKEEVRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWISRVQEVGSKVEKL 88 (337)
Q Consensus 9 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~~ed~ 88 (337)
.+++.+.+.++..-.+...+..|..+.....+.|++ ..+++.|.++=++ ..-..|+
T Consensus 280 Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~-----------------------~~q~K~~~kqqk~-i~~~K~~ 335 (614)
T KOG0927|consen 280 DFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELE-----------------------ENQMKAYEKQQKQ-IAHMKDL 335 (614)
T ss_pred hhhhhHhhhhheecccceeeecCCHHHHhhHHHHHh-----------------------HHHHHHHHHHHhH-HHHhhHH
Confidence 567778888888777777777777777666655553 2445566655444 3345666
Q ss_pred HhhcCCCCCCCchhchHHHHHHHHHHHHHHHHhcCC-------------CCccccCCCCCCCCCCCCCCccccchhhHHH
Q 045709 89 KEEEYPESRCSKSTYKLGKKVFRTLREVRSLRQEGD-------------FKDVAQPVPENPVDERPLPPTVVGLQLTFDR 155 (337)
Q Consensus 89 ld~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~ 155 (337)
+-.+..+ | ...+++.....+.+..+..++- |..+.. .|++.... ...-+|.++.- .
T Consensus 336 ia~~g~g--~----a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~-~p~pvi~~---~nv~F~y~~~~-~ 404 (614)
T KOG0927|consen 336 IARFGHG--S----AKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGK-IPPPVIMV---QNVSFGYSDNP-M 404 (614)
T ss_pred HHhhccc--c----hhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccC-CCCCeEEE---eccccCCCCcc-h
Confidence 6555322 2 2345555555555555544331 111111 01110000 11124444333 2
Q ss_pred HHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC----cEE---------------EEEE-----ecCccC
Q 045709 156 VWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF----DFV---------------IWVV-----VSRDLQ 209 (337)
Q Consensus 156 l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~---------------~wv~-----~~~~~~ 209 (337)
|..-|.- +.-..|++||++|+|||||.+.++.+.....+.- ..+ .|.. .-....
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~ 484 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEK 484 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccc
Confidence 3333321 3457899999999999999999988763221111 000 0000 001123
Q ss_pred HHHHHHHHHHHhCCCCcc----ccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCccccccc---cCCCCCCCCCCcEEEE
Q 045709 210 LEKIQESIAKKIGLFNES----WKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELVDLDQV---GLPIPSRTSVSNKVVF 281 (337)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~l---~~~l~~~~~g~s~Iii 281 (337)
..+..+.++..++...+. +...+..+....+..++ -..+-|||||+.-+..+.+.+ ..++..- .| -+|+
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~-~G--gvv~ 561 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF-PG--GVVL 561 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-CC--ceee
Confidence 456677788888775321 13334444445554444 467899999987765443322 2222222 23 4777
Q ss_pred eeCChhH
Q 045709 282 TTREFGV 288 (337)
Q Consensus 282 Ttr~~~v 288 (337)
+|++--+
T Consensus 562 vSHDfrl 568 (614)
T KOG0927|consen 562 VSHDFRL 568 (614)
T ss_pred eechhhH
Confidence 8877544
No 167
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.62 E-value=0.00046 Score=59.54 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----CCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKS 232 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 232 (337)
...++.|+|.+|+|||+|+.+++... .... ....++|++....++..++. ++++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 56899999999999999999997554 1122 13678999988776655443 344443322110 01122
Q ss_pred HHH---HHHHHHHHhc-C-CcEEEEEecCCC
Q 045709 233 MQE---KAQEIFKILS-K-KKFVLLLDDIWE 258 (337)
Q Consensus 233 ~~~---~~~~l~~~l~-~-k~~LlVlDdv~~ 258 (337)
..+ ....+...+. . +.-+||+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 233 3344444443 3 667999999864
No 168
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=6.6e-05 Score=62.61 Aligned_cols=113 Identities=18% Similarity=0.071 Sum_probs=63.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS 245 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (337)
.++.|+|..|.||||++..++.+.. .+...++.+. +.++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999999988872 2333344342 1112122233455555543222112334455555555 33
Q ss_pred CCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 246 KKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 246 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
++.-+||+|++.-. ++..++...+ ...| ..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g-~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLG-IPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcC-CeEEEEecCcc
Confidence 34458999999543 2122232221 1245 78999999833
No 169
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0011 Score=64.04 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=89.3
Q ss_pred CccccchhhHHHHHHHHhc------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
.+-.|.++..++|++.+.- .+.+++..+|++|+|||++++.++.-+ ...|- -++++.-.+..+|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIK--- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhc---
Confidence 4458999999999998742 378999999999999999999999988 33332 13445444444432
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc------------------ccccccCCCCCCCCCCcEE
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV------------------DLDQVGLPIPSRTSVSNKV 279 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------------~~~~l~~~l~~~~~g~s~I 279 (337)
.+....-..=+..+++-|+. .+-.+-|+.||+|+... +-..|...+.+-.-.-|+|
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred -----ccceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 11100011111222332222 23456688899987531 1111111111111111677
Q ss_pred EEeeCChhHH----hhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 280 VFTTREFGVC----GQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 280 iiTtr~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
++.+--..+. ...+.-..|+|.+...+|-..+-.++..
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 6543322221 1122346889999988888777766653
No 170
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.60 E-value=0.00034 Score=71.35 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.9
Q ss_pred CCccccchhhHHHHHHHHhc-------C--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLME-------E--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.+..+..+...+.. . +...+.++|++|+|||+||+.+++.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999887752 1 23467799999999999999999877
No 171
>PRK12377 putative replication protein; Provisional
Probab=97.60 E-value=0.00054 Score=59.38 Aligned_cols=75 Identities=25% Similarity=0.262 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
....+.++|.+|+|||+||..+++... .....++++++. +++..+-..... ..+.. .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999883 233335665443 444444443321 11111 22233
Q ss_pred hcCCcEEEEEecCCC
Q 045709 244 LSKKKFVLLLDDIWE 258 (337)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (337)
+ .+.-||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3566999999943
No 172
>PRK09354 recA recombinase A; Provisional
Probab=97.60 E-value=0.00027 Score=63.95 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
..+++-|+|++|+|||||+.+++.... ..-..++|++....++.. .+.+++...+.. ...+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 567999999999999999999887772 344678899888776652 345555432111 233456666666
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 045709 241 FKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (337)
...++ +..-++|+|.+-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55554 4566999999864
No 173
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.60 E-value=0.00034 Score=57.01 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC-----cEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-----DFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKA 237 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 237 (337)
.+..+++|+|.+|+|||||++.+........+.. ..+.++.-........+...+... . ....+..+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~---~~~LS~G~~~ 98 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---W---DDVLSGGEQQ 98 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---C---CCCCCHHHHH
Confidence 3567999999999999999999988652111111 112222211111111233332210 1 1334443333
Q ss_pred -HHHHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 238 -QEIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 238 -~~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
-.+...+..++-++++|+.-+..+. ..+...+... + ..||++|++...... +++++.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~-~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--G-ITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--C-CEEEEEeCChhHHhh--CCEEEEE
Confidence 3355666678889999987654332 1221222221 4 578888888766532 4455544
No 174
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=0.00032 Score=60.61 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C--------------cEEEEEEe----------------cC----
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F--------------DFVIWVVV----------------SR---- 206 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~~----------------~~---- 206 (337)
.+..+++|+|++|+|||||.+.++.-.....+. . ....|+.- ++
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~ 105 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL 105 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc
Confidence 357899999999999999999997744100000 0 01222210 10
Q ss_pred ----ccC--HHHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCC
Q 045709 207 ----DLQ--LEKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIP 270 (337)
Q Consensus 207 ----~~~--~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~ 270 (337)
..+ -.+...+.++.++... ..+...+..+.+.. +...|..+.=+|+||+--+..|.. ++...+.
T Consensus 106 ~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 106 GLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred ccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 001 1223444555555432 22345565555554 667788888999999876543321 1111121
Q ss_pred CCCCCCcEEEEeeCChhHHhhcc
Q 045709 271 SRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
...| ..||+++++-+.+..+.
T Consensus 186 -~~~~-~tvv~vlHDlN~A~rya 206 (258)
T COG1120 186 -REKG-LTVVMVLHDLNLAARYA 206 (258)
T ss_pred -HhcC-CEEEEEecCHHHHHHhC
Confidence 1245 78999999999887653
No 175
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.00028 Score=71.83 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=38.5
Q ss_pred CCccccchhhHHHHHHHHhc-------C--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLME-------E--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.+..++.+.+.+.. + +..++.++|++|+|||.||+.+....
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 1 34578999999999999999998877
No 176
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.58 E-value=0.0013 Score=60.53 Aligned_cols=161 Identities=14% Similarity=0.282 Sum_probs=97.8
Q ss_pred chhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHH-HHHHHhhccCCCCCcEEEEEEecCc---cCHHHHHHHHHHHhCCC
Q 045709 149 LQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDFVIWVVVSRD---LQLEKIQESIAKKIGLF 224 (337)
Q Consensus 149 r~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 224 (337)
|.+..++|..||.......|.|.|+-|+||+.|+ .++.++. .+ +..++|.+- .+-..++..++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---KN----VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---CC----EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988899999999999999999 7776654 11 666665432 23344555555555432
Q ss_pred C-----------------------ccccCCCHHHHHHHHHH----Hhc--------------------------CCcEEE
Q 045709 225 N-----------------------ESWKNKSMQEKAQEIFK----ILS--------------------------KKKFVL 251 (337)
Q Consensus 225 ~-----------------------~~~~~~~~~~~~~~l~~----~l~--------------------------~k~~Ll 251 (337)
+ ..+ +.+.+.....+.. .|+ ..+-++
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGf-Ses~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGF-SESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1 111 1222222211111 110 125689
Q ss_pred EEecCCCccc-----cccc---cCCCCCCCCCCcEEEEeeCChhHHh----hcc--CCceeecCCCCHHHHHHHHhHhhC
Q 045709 252 LLDDIWELVD-----LDQV---GLPIPSRTSVSNKVVFTTREFGVCG----QME--AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 252 VlDdv~~~~~-----~~~l---~~~l~~~~~g~s~IiiTtr~~~v~~----~~~--~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
||||+..... |+.+ ...+-. .+- .+||++|-+..... .+. ..+.+.|.-.+++.|..+...+..
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nI-AHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ-NNI-AHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh-cCc-cEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9999865422 1111 111222 234 68999887755433 332 346789999999999999999986
Q ss_pred CC
Q 045709 318 AD 319 (337)
Q Consensus 318 ~~ 319 (337)
..
T Consensus 231 ~~ 232 (431)
T PF10443_consen 231 ED 232 (431)
T ss_pred cc
Confidence 53
No 177
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.58 E-value=0.00043 Score=60.52 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (337)
...+.=|+|.+|+|||+|+..++-.... ..+.-..++|++-...++..++. +|++..+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 5679999999999999999988765411 11234579999999988887765 567665432211 012334
Q ss_pred HHHHHH---HHHHh-cCCcEEEEEecCCC
Q 045709 234 QEKAQE---IFKIL-SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~~~---l~~~l-~~k~~LlVlDdv~~ 258 (337)
.++... +...+ ..+--|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 444333 33334 34556999999853
No 178
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.58 E-value=1.8e-05 Score=71.70 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=96.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC-cEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
..+.+.++|.|||||||++-.+.+ . ...| +.+.++...+..+...+.-.+...++.+. .+.+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 468899999999999999999988 4 3444 46667777777777777766666676643 233445556777
Q ss_pred HhcCCcEEEEEecCCCccc-cccccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeecCCCCHH-HHHHHHhHhhC
Q 045709 243 ILSKKKFVLLLDDIWELVD-LDQVGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKVECLRYD-DAWKLFEQKVG 317 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~ 317 (337)
...+++.++|+||.....+ -..+.-.+-.+... -.|+.|+|...... ...+..+++|+.. ++.++|...+.
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~-~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPR-LAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchh-hhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHH
Confidence 7888999999999976532 11111112222333 57888888554332 3456778888875 79999988763
No 179
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.56 E-value=9.2e-05 Score=62.19 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=62.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-ccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
+++.|+|++|+||||++..+.... .......++.--.+ ...... ...+..+-. ...+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIEFVHES-KRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCccccccC-ccceeeecc------cCCCccCHHHHHHHHh
Confidence 578999999999999999888776 22333333332111 100000 000111100 0111223445577777
Q ss_pred cCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 245 SKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
...+=++++|++.+.+.+...... ...| ..++.|++..++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~---a~~G-~~v~~t~Ha~~~~~ 113 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA---AETG-HLVMSTLHTNSAAK 113 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH---HHcC-CEEEEEecCCcHHH
Confidence 777889999999776655443222 1245 56888888766544
No 180
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.7e-05 Score=57.19 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|.|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 181
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.55 E-value=0.00075 Score=60.70 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC---CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT---PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 233 (337)
...++-|+|.+|+|||+|+.+++-..... ...-..++|++....+++.++. ++++.++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 56889999999999999998876543110 1223478999999888888765 4666666532211 12234
Q ss_pred HHHH---HHHHHHhc-CCcEEEEEecCCC
Q 045709 234 QEKA---QEIFKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~---~~l~~~l~-~k~~LlVlDdv~~ 258 (337)
++.. ..+...+. ++--|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 4333 33333443 3556899999863
No 182
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00028 Score=57.91 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCC-c--cccC--------C
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFN-E--SWKN--------K 231 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~--~~~~--------~ 231 (337)
.+..+++|+|.+|+|||||++.++... ......+++.-....... ..+...++.-. . -+.. .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhc
Confidence 356799999999999999999998765 123344443221110000 11111111100 0 0011 2
Q ss_pred CHHHHHH-HHHHHhcCCcEEEEEecCCCccccc---cccCCCCC-CCCCCcEEEEeeCChhHHhh
Q 045709 232 SMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS-RTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 232 ~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~-~~~g~s~IiiTtr~~~v~~~ 291 (337)
+..+..+ .+...+..++-++++|+.-...+.. .+...+.. ...| ..||++|++......
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tiii~th~~~~~~~ 160 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILEEAER 160 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHH
Confidence 3333333 3566777888999999986653321 11111211 1135 689999998776553
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00067 Score=61.44 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHHHhc-CCCe-EEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCLME-EHAG-IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~-~~~~-vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++|-+.....+..+... .+.+ .+.++|++|+||||+|..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777788888888774 3344 49999999999999999999887
No 184
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00059 Score=59.51 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
+..-+.++|.+|+|||.||..+.+... ..--.+.++ +..+++.++....... .....|...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~------~~~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFI------TAPDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEE------EHHHHHHHHHHHHhcC----------chHHHHHHH
Confidence 677899999999999999999999983 222345555 3455666666555321 112223332
Q ss_pred hcCCcEEEEEecCCC
Q 045709 244 LSKKKFVLLLDDIWE 258 (337)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (337)
+ .+-=||||||+-.
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 2334999999865
No 185
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.52 E-value=0.00084 Score=66.51 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=76.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS 245 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 245 (337)
+-+.++|++|+|||++|+.+.+.. ..+| +.++.+ .+. ... ...........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~----~~~-------~g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFV----EMF-------VGVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhH----Hhh-------hcccHHHHHHHHHHHHh
Confidence 448999999999999999998876 3333 122221 111 111 11111222223333334
Q ss_pred CCcEEEEEecCCCccc----------------cccccCCCCC--CCCCCcEEEEeeCChhHHhh-c----cCCceeecCC
Q 045709 246 KKKFVLLLDDIWELVD----------------LDQVGLPIPS--RTSVSNKVVFTTREFGVCGQ-M----EAHRSFKVEC 302 (337)
Q Consensus 246 ~k~~LlVlDdv~~~~~----------------~~~l~~~l~~--~~~g~s~IiiTtr~~~v~~~-~----~~~~~~~l~~ 302 (337)
..+++|+||+++.... +..+...+.. ...+ .-+|.||...+.... + ..+..+.++.
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~-vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG-IIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC-eeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 5789999999975411 1111111111 1223 344556666554221 1 1246778888
Q ss_pred CCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 303 LRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 303 L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
.+.++-.++|..+........+.++..+++
T Consensus 322 Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~ 351 (644)
T PRK10733 322 PDVRGREQILKVHMRRVPLAPDIDAAIIAR 351 (644)
T ss_pred CCHHHHHHHHHHHhhcCCCCCcCCHHHHHh
Confidence 888888888888775433223334444443
No 186
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.51 E-value=0.0002 Score=64.88 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHHhc------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLME------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++|.++.++++++++.. ...+++.++|++|+||||||..+.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 246899999999999999999998887
No 187
>PRK06921 hypothetical protein; Provisional
Probab=97.50 E-value=0.00027 Score=62.13 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=29.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (337)
....+.++|.+|+|||+|+..+++... ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 457789999999999999999999872 221344566654
No 188
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0024 Score=60.82 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=84.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
...-|.++|++|+|||-||+.++|.. ..+|- ++..+ +++..- -..+.....+.+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NFi-----sVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANFI-----SVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCceE-----eecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 35568899999999999999999987 45553 33322 222211 122222333334444
Q ss_pred hcCCcEEEEEecCCCccc-------------cccccCCCCCC--CCCCcEEEEeeCChhHHh-h-cc---CCceeecCCC
Q 045709 244 LSKKKFVLLLDDIWELVD-------------LDQVGLPIPSR--TSVSNKVVFTTREFGVCG-Q-ME---AHRSFKVECL 303 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~--~~g~s~IiiTtr~~~v~~-~-~~---~~~~~~l~~L 303 (337)
-..-+|+|.||+++.... ..++..-+... ..| --||-.|...++.. . +. -+...-++.-
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g-V~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG-VYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc-eEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 456799999999985411 22332222211 223 44554554444421 1 22 2356677888
Q ss_pred CHHHHHHHHhHhhCCC--CCCCCCChHHHHHH
Q 045709 304 RYDDAWKLFEQKVGAD--TLDSHPDIPELAET 333 (337)
Q Consensus 304 ~~~ea~~Lf~~~~~~~--~~~~~~~l~~i~~~ 333 (337)
+.+|-..+++...... -...+-++.+||..
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 8899999999888732 23445567777753
No 189
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.50 E-value=0.03 Score=50.29 Aligned_cols=116 Identities=24% Similarity=0.173 Sum_probs=65.9
Q ss_pred cchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC
Q 045709 148 GLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL 223 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 223 (337)
++.........++.+ ...+-+.|+|..|+|||.||..+++... ...+ .+.++++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 444444444555542 1356789999999999999999999983 2233 3455544 3455555554421
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--ccccc--ccCCC-CCC-CCCCcEEEEeeCC
Q 045709 224 FNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQ--VGLPI-PSR-TSVSNKVVFTTRE 285 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~g~s~IiiTtr~ 285 (337)
.+..+ ..+.+ .+.=||||||+... ..|.. +...+ ... ..+ ..+|+||.-
T Consensus 206 -------~~~~~----~l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~-~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKE----KIDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEE-LPTFFTSNF 260 (306)
T ss_pred -------CcHHH----HHHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCC-CeEEEECCC
Confidence 11222 22223 34569999999643 44542 32222 211 233 578888874
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00049 Score=56.34 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc--cCHHHHHHHHHHHhCCCC--ccccC-------C
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQESIAKKIGLFN--ESWKN-------K 231 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~--~~~~~-------~ 231 (337)
....+++|+|.+|+|||||.+.++.... .....+++.-... ..... ....++.-. ..... .
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhh
Confidence 3578999999999999999999988652 2233333321110 01111 111111100 00000 2
Q ss_pred CHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 232 SMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 232 ~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
+..+..+ .+...+..++-+|+||+.....+. ..+...+.....+ ..||++|++...... +++.+.+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHh--CCEEEEE
Confidence 2222222 255566678889999998654331 2221212111235 688999998776653 4455544
No 191
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0003 Score=61.84 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=77.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccC--CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDT--PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
.++|.++|+||.|||+|++.+++.. .+ .+.|....-+.+.. ..++.+.... .++....+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5789999999999999999999987 32 33444444444332 2333322221 33456677888888
Q ss_pred HhcCCcE--EEEEecCCCcc------------------------ccccccCCCCCCCCCCcEEEEeeCChh----HHhhc
Q 045709 243 ILSKKKF--VLLLDDIWELV------------------------DLDQVGLPIPSRTSVSNKVVFTTREFG----VCGQM 292 (337)
Q Consensus 243 ~l~~k~~--LlVlDdv~~~~------------------------~~~~l~~~l~~~~~g~s~IiiTtr~~~----v~~~~ 292 (337)
.+.++.. ++.+|+|++.. +++.+.. .. .-+|+||.+-. +|---
T Consensus 244 Lv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~------~~-NvliL~TSNl~~siD~AfVD 316 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR------YP-NVLILATSNLTDSIDVAFVD 316 (423)
T ss_pred HHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc------CC-CEEEEeccchHHHHHHHhhh
Confidence 8876654 45579997531 1222211 12 35667776522 22211
Q ss_pred cCCceeecCCCCHHHHHHHHhHhh
Q 045709 293 EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.++-...+.+-+.+--.++++.+.
T Consensus 317 RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 317 RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HhhheeecCCccHHHHHHHHHHHH
Confidence 233455677777777777776653
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0017 Score=58.88 Aligned_cols=142 Identities=9% Similarity=0.050 Sum_probs=72.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC-----Cccc-cCCCHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF-----NESW-KNKSMQEKAQ 238 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~-~~~~~~~~~~ 238 (337)
.+.+.++|+.|+|||++|..++....- ...... .........+.+...-... .... .....++. +
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC-~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i-R 92 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC-EAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV-R 92 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC-CCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH-H
Confidence 567889999999999999999887731 111000 0001111111111100000 0000 01122222 2
Q ss_pred HHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-HHhhc-cCCceeecCCCCHHHHH
Q 045709 239 EIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-VCGQM-EAHRSFKVECLRYDDAW 309 (337)
Q Consensus 239 ~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~~-~~~~~~~l~~L~~~ea~ 309 (337)
.+.+.+ .+++-++|+|+++... ....+...+..-..+ +.+|+||.+.+ +...+ +....+.+.+++.+++.
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~-~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGD-TVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCC-eEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 233333 2344566789998652 233333333222234 77777777654 33222 23467899999999999
Q ss_pred HHHhHhh
Q 045709 310 KLFEQKV 316 (337)
Q Consensus 310 ~Lf~~~~ 316 (337)
+.+....
T Consensus 172 ~~L~~~~ 178 (328)
T PRK05707 172 QWLQQAL 178 (328)
T ss_pred HHHHHhc
Confidence 8887754
No 193
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.47 E-value=0.00077 Score=53.50 Aligned_cols=105 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHH-HHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEK-AQEIF 241 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~l~ 241 (337)
....+++|+|.+|+|||||++.+.... ......+|+.-.. .++.- ...+..+. .-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~-------------~i~~~----~~lS~G~~~rv~la 82 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV-------------KIGYF----EQLSGGEKMRLALA 82 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE-------------EEEEE----ccCCHHHHHHHHHH
Confidence 356799999999999999999997765 2233444442110 00000 00222222 22355
Q ss_pred HHhcCCcEEEEEecCCCccc---cccccCCCCCCCCCCcEEEEeeCChhHHhh
Q 045709 242 KILSKKKFVLLLDDIWELVD---LDQVGLPIPSRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~ 291 (337)
..+..++-++++|+.-...+ ...+...+... + ..||++|++.+....
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~-~til~~th~~~~~~~ 132 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--P-GTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHH
Confidence 56667788999998865433 22222222221 3 578888888766543
No 194
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.46 E-value=0.00029 Score=57.91 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHH-HHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEK-AQEIF 241 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~l~ 241 (337)
.+..+++|+|.+|+|||||++.+..-.. .....+++.... ++...+. ...+..+. .-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~--------------i~~~~q~-~~LSgGq~qrv~la 83 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEWDGIT--------------PVYKPQY-IDLSGGELQRVAIA 83 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEECCEE--------------EEEEccc-CCCCHHHHHHHHHH
Confidence 4678999999999999999999987651 222223221100 0000000 01333332 22355
Q ss_pred HHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCcEEEEeeCChhHHh
Q 045709 242 KILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s~IiiTtr~~~v~~ 290 (337)
..+..++-+++||+.-+..+.. .+...+.. ...+ ..||++|++.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGK-KTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCC-CEEEEEECCHHHHH
Confidence 6666778899999976543311 11111111 1123 57888888876544
No 195
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.46 E-value=0.00027 Score=57.41 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc--cCHHHHHHHHHHHhCCCCccccCCCHHHHHH-H
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD--LQLEKIQESIAKKIGLFNESWKNKSMQEKAQ-E 239 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~ 239 (337)
.+..+++|+|.+|+|||||.+.++... ......+++.-... .+.... ....++.- ...+..+..+ .
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~----~qLS~G~~qrl~ 92 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMV----YQLSVGERQMVE 92 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEE----EecCHHHHHHHH
Confidence 356799999999999999999998765 23344444432111 111111 11111111 1133333332 3
Q ss_pred HHHHhcCCcEEEEEecCCCcccc---ccccCCCCC-CCCCCcEEEEeeCChhHHh
Q 045709 240 IFKILSKKKFVLLLDDIWELVDL---DQVGLPIPS-RTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 240 l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~-~~~g~s~IiiTtr~~~v~~ 290 (337)
+...+-.++-++++|+.-+..+. ..+...+.. ...+ ..||++|++.....
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~-~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHH
Confidence 55566677889999998654331 122111211 1235 68899999876543
No 196
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.45 E-value=0.002 Score=58.58 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 233 (337)
...++-|+|.+|+|||+|+.+++-..+. ..+.-..++|++....+++.++. ++++.++...+.. ...+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 5678889999999999999988644311 01223578999999988888865 4666666542111 22344
Q ss_pred HHHHHH---HHHHhc-CCcEEEEEecCCC
Q 045709 234 QEKAQE---IFKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~~~---l~~~l~-~k~~LlVlDdv~~ 258 (337)
++.... +...+. .+--|||+|.+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 443333 333332 3455899999853
No 197
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.43 E-value=0.00069 Score=65.07 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=41.5
Q ss_pred CCCHHH-HHHHHHHHhcCCcEEEEEecCCCcccccc---ccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeecC
Q 045709 230 NKSMQE-KAQEIFKILSKKKFVLLLDDIWELVDLDQ---VGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKVE 301 (337)
Q Consensus 230 ~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l~ 301 (337)
..+..+ ..-.|.+.|-.++=+|+||+--+..+.+. +...+. ..+| .+||+|+++.....+. ..+++++
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g--tviiVSHDR~FLd~V~-t~I~~ld 224 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG--TVIVVSHDRYFLDNVA-THILELD 224 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC--cEEEEeCCHHHHHHHh-hheEEec
Confidence 334333 33446677788899999999877655332 222232 2233 7999999998876652 3344443
No 198
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00034 Score=57.71 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=65.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC--Ccc-ccC---------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF--NES-WKN--------- 230 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--~~~-~~~--------- 230 (337)
.+..+++|+|.+|+|||||++.+.... ......+.+.-........-.......++.- ... +..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 356799999999999999999998755 2223333332111000000000111111100 000 001
Q ss_pred -CCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc------ccccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 231 -KSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL------DQVGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 231 -~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
.+..+..+ .+...+..++-++++|+.-...+. .++...+.. ..+ ..||++|++.+....+ .++.+.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~-~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLG-ITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcC-CEEEEEeCCHHHHHHh-cCEEEEE
Confidence 22223222 355666778889999987654331 121111211 124 6889999887765533 2344444
No 199
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.43 E-value=0.0044 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHhc---CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 150 QLTFDRVWRCLME---EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 150 ~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455667777765 367899999999999999999999988
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.43 E-value=0.00046 Score=66.78 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=55.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
..+++.++|++|.||||||+.++++. .| .++=+++|+.-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45789999999999999999998875 23 3667888888777777777766654322 1
Q ss_pred h--cCCcEEEEEecCCCc
Q 045709 244 L--SKKKFVLLLDDIWEL 259 (337)
Q Consensus 244 l--~~k~~LlVlDdv~~~ 259 (337)
+ .+++..||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 267889999999864
No 201
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.001 Score=63.23 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
++++|.+.....|.+.+..++ ..-....|+-|+||||+|+.++...- -.+. ....++........|-..-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 357999999999999987764 45677889999999999999988661 1110 01111122222222222100
Q ss_pred CCCccc--cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE-eeCChhHH-hh
Q 045709 223 LFNESW--KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFGVC-GQ 291 (337)
Q Consensus 223 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii-Ttr~~~v~-~~ 291 (337)
...-.+ .+...-+-.+.|.+.. .++-=+.|+|+|+-. ..|..+..-+-.-... -..|+ ||-...+. ..
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h-V~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH-VKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccC-eEEEEecCCcCcCchhh
Confidence 000000 0111122233344333 244458999999743 4555554444222223 44454 44444443 22
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhCCCCCCC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVGADTLDS 323 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 323 (337)
++....|.+..|+.++-...+...+.......
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~ 198 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINI 198 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCcc
Confidence 34457899999999988888888776555333
No 202
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00081 Score=58.07 Aligned_cols=125 Identities=17% Similarity=0.135 Sum_probs=74.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-----ccCHHHHHHHHHHHhCCCCcc----ccCCCH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-----DLQLEKIQESIAKKIGLFNES----WKNKSM 233 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~----~~~~~~ 233 (337)
.+..+++|+|.+|+||||+++.+..-. ..-...++....+ .....+-..+++...+...+. ....+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 367899999999999999999998766 2223333333211 112334455666666654321 133444
Q ss_pred HHHHHH-HHHHhcCCcEEEEEecCCCcccc---c---cccCCCCCCCCCCcEEEEeeCChhHHhhcc
Q 045709 234 QEKAQE-IFKILSKKKFVLLLDDIWELVDL---D---QVGLPIPSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 234 ~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~---~---~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
.++++. +.+.|.-++-|+|.|+.-+..+. . .+...+.. ..| -..++.|.+-.+...+.
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~-lt~lFIsHDL~vv~~is 177 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELG-LTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhC-CeEEEEEEEHHhhhhhc
Confidence 555544 66778889999999987665332 1 11111111 124 56777788777766553
No 203
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.41 E-value=0.0011 Score=56.12 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe----------------------cCc------c------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV----------------------SRD------L------ 208 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----------------------~~~------~------ 208 (337)
.+...++|+|++|+|||||...+..-.. .-...+++.. -+. .
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv 104 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHH
Confidence 3567999999999999999999865331 1111222110 000 0
Q ss_pred ------------CHHHHHHHHHHHhCCCCc----cccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccc------cccc
Q 045709 209 ------------QLEKIQESIAKKIGLFNE----SWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVD------LDQV 265 (337)
Q Consensus 209 ------------~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~------~~~l 265 (337)
....-...+++.++.... .+...+..+.++ .+.+.|-..+-+|+.|+--...+ .-.+
T Consensus 105 ~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 105 ELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred HhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 123334555566555411 123445444443 47778888899999997643221 1122
Q ss_pred cCCCCCCCCCCcEEEEeeCChhHHhhccCCceeecC
Q 045709 266 GLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKVE 301 (337)
Q Consensus 266 ~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l~ 301 (337)
...+ ....| ..||+.|++..++..+ +.+|.+.
T Consensus 185 l~~~-~~~~g-~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 185 LREL-NKERG-KTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHH-HHhcC-CEEEEEcCCHHHHHhC--CEEEEEe
Confidence 1111 11235 7999999999999864 4455443
No 204
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.00045 Score=56.80 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=29.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEE
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWV 202 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv 202 (337)
+..+|.+.|++|+||||+|+.++..+ ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 46799999999999999999999988 3445555555
No 205
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.40 E-value=0.00059 Score=55.97 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC--ccCHHHHHHHHHHHhCCCCcc--ccC-------C
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR--DLQLEKIQESIAKKIGLFNES--WKN-------K 231 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~--~~~-------~ 231 (337)
....+++|+|.+|+|||||++.+..... .....++++-.. ....... ...++.-.+. ... .
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lL 97 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENIL 97 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCc
Confidence 3567999999999999999999987651 222333332111 0111111 1111110000 000 2
Q ss_pred CHHHHH-HHHHHHhcCCcEEEEEecCCCcccc---ccccCCCCC-CCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 232 SMQEKA-QEIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPS-RTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 232 ~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~-~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
+..+.. -.+...+..++-+++||+.....+. ..+...+.. ...| ..||++|++..... . +++++.+
T Consensus 98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG-ATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHH-h-CCEEEEE
Confidence 322322 2345556677789999998654331 111111111 1235 78999999887664 2 4455544
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.39 E-value=0.0016 Score=52.27 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=30.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL 208 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 208 (337)
++.|+|.+|+||||++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 36799999999999999998887 2345567788776543
No 207
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.0022 Score=57.34 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=69.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---C------------cEEEEEEecC----ccCHH-------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---F------------DFVIWVVVSR----DLQLE------------- 211 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f------------~~~~wv~~~~----~~~~~------------- 211 (337)
+..++++.|++|+|||||.+.+........+. + ..+.++.-.. ..+..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 56799999999999999999998766211110 0 0122322111 11222
Q ss_pred -----HHHHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccc-------cccccCCCCCCCCC
Q 045709 212 -----KIQESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVD-------LDQVGLPIPSRTSV 275 (337)
Q Consensus 212 -----~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~g 275 (337)
+-...+++.++... ......+.....+ .+...|-.++=+++||+--+..| |+-+.. +.. ..+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~-l~~-~g~ 187 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE-LAK-EGG 187 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH-HHh-CCC
Confidence 23445555555543 1123334333333 25566678889999998765432 222222 211 122
Q ss_pred CcEEEEeeCChhHHhhc
Q 045709 276 SNKVVFTTREFGVCGQM 292 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~~ 292 (337)
..|++||+..+....+
T Consensus 188 -~tvlissH~l~e~~~~ 203 (293)
T COG1131 188 -VTILLSTHILEEAEEL 203 (293)
T ss_pred -cEEEEeCCcHHHHHHh
Confidence 5899999987655443
No 208
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.38 E-value=0.0017 Score=56.11 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc----------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES---------------- 227 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 227 (337)
...++.|.|.+|+|||+|+.++.... -..-..++|++... ++..+.+.+. +++.....
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 67899999999999999999976654 13345678887764 4455555433 22221000
Q ss_pred ------------ccCCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 045709 228 ------------WKNKSMQEKAQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 228 ------------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
....+..+....+.+.+.. +.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123556666777766643 445799999865
No 209
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0027 Score=59.60 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=35.0
Q ss_pred ccccch---hhHHHHHHHHhcC--------C-CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQ---LTFDRVWRCLMEE--------H-AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++-|-| .++++|++.|.++ + ++-|.++|++|.|||-||+.++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 4677788888763 1 4568899999999999999998876
No 210
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.36 E-value=0.002 Score=55.62 Aligned_cols=88 Identities=13% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc----------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES---------------- 227 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 227 (337)
...++.|+|.+|+|||+|+.++..... ..-..++|++.... +..+...+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 578999999999999999999966542 23457888888653 44555543 333321110
Q ss_pred --ccCCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 045709 228 --WKNKSMQEKAQEIFKILSK-KKFVLLLDDIW 257 (337)
Q Consensus 228 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 257 (337)
....+.+.....+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666677776654 56689999876
No 211
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.35 E-value=0.0019 Score=56.80 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC-CCccc---
Q 045709 154 DRVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL-FNESW--- 228 (337)
Q Consensus 154 ~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~--- 228 (337)
+.++..|.. .....++|+|.+|+|||||.+.+..... .....+++.-..-... +-..++...... +....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 334444433 3457899999999999999999988762 2233333321111000 011233322211 11100
Q ss_pred -cCCCHHHHHHHHHHHh-cCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 229 -KNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 229 -~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
...+......-+...+ ...+-++++|++-..+.+..+...+. .| ..||+||++..+..
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G-~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AG-VSIIATAHGRDVED 233 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CC-CEEEEEechhHHHH
Confidence 1111111122233333 25788999999977666665544432 46 78999999876643
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.35 E-value=0.0019 Score=55.82 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=46.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
...+.++|.+|+|||+|+..+++... .....+++++ ..+++..+-..... ...+.. .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~----~~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----SETSEE----QLLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----ccccHH----HHHHHh
Confidence 35788999999999999999999883 2234455553 34455444443321 111222 233334
Q ss_pred cCCcEEEEEecCCCc
Q 045709 245 SKKKFVLLLDDIWEL 259 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~ 259 (337)
. +.=||||||+...
T Consensus 161 ~-~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c-cCCEEEEeCCCCC
Confidence 4 3448899999654
No 213
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.35 E-value=0.00097 Score=56.41 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc-----------EEEEEEecC----ccCHHH-------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD-----------FVIWVVVSR----DLQLEK------------- 212 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-----------~~~wv~~~~----~~~~~~------------- 212 (337)
.+..+++|+|.+|+|||||++.+........+. ++ .+.|+.-.. ..+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEE 105 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcH
Confidence 357899999999999999999998764211110 00 122221110 011111
Q ss_pred -HHHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccc---cccccCCCCC-CCCCCcEEEEee
Q 045709 213 -IQESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVD---LDQVGLPIPS-RTSVSNKVVFTT 283 (337)
Q Consensus 213 -~~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~g~s~IiiTt 283 (337)
-..+++..++... ......+..+..+ .+...+..++-+|+||+.-+..+ ...+...+.. ...| ..||++|
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~tiii~s 184 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG-GIVIAAT 184 (207)
T ss_pred HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCC-CEEEEEe
Confidence 1223333343321 1112233333332 24556667788999998765433 1222222221 1235 7899999
Q ss_pred CChhHHhhccCCceeecCCC
Q 045709 284 REFGVCGQMEAHRSFKVECL 303 (337)
Q Consensus 284 r~~~v~~~~~~~~~~~l~~L 303 (337)
++...... ..++.+++.
T Consensus 185 H~~~~~~~---~~~~~~~~~ 201 (207)
T PRK13539 185 HIPLGLPG---ARELDLGPF 201 (207)
T ss_pred CCchhhcc---CcEEeecCc
Confidence 98766553 566777653
No 214
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.34 E-value=0.0018 Score=58.37 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 233 (337)
...++.|+|.+|+|||+|+..++..... .......++|++....++..++ .++++.++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 5789999999999999999998764311 0112246799998887777763 44555555432110 12233
Q ss_pred HHHHH---HHHHHhc-CCcEEEEEecCCC
Q 045709 234 QEKAQ---EIFKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~~---~l~~~l~-~k~~LlVlDdv~~ 258 (337)
++... .+...+. .+.-|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 33333 3333343 3556999999754
No 215
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.34 E-value=0.0014 Score=60.27 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|.|.+|+|||||+.+++.... .....++|++.... ...+ ..-+..++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 568999999999999999999988772 23346788876543 3332 22234555433221 122334433333
Q ss_pred HHHhcCCcEEEEEecCCC
Q 045709 241 FKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~~k~~LlVlDdv~~ 258 (337)
. ..+.-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 34677999999854
No 216
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0013 Score=63.49 Aligned_cols=146 Identities=20% Similarity=0.180 Sum_probs=83.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
..+.+.++|++|+|||.||+.+++.. ..+|-.+.+- .++ .. +-..+.......+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~---------~l~----sk-------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS---------ELL----SK-------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH---------HHh----cc-------ccchHHHHHHHHHHHH
Confidence 45689999999999999999999976 4555433211 111 10 0122223333344444
Q ss_pred hcCCcEEEEEecCCCccccc-------------cccCCCCCCCCCC-cEEEEeeCChhHHhh-c----cCCceeecCCCC
Q 045709 244 LSKKKFVLLLDDIWELVDLD-------------QVGLPIPSRTSVS-NKVVFTTREFGVCGQ-M----EAHRSFKVECLR 304 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~~~~~-------------~l~~~l~~~~~g~-s~IiiTtr~~~v~~~-~----~~~~~~~l~~L~ 304 (337)
.+..++.|.+|+++....+. ++...+....... ..||-||........ + .-...+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 56789999999998642221 2222222112220 234444444333221 1 124578899999
Q ss_pred HHHHHHHHhHhhCCCCC--CCCCChHHHHH
Q 045709 305 YDDAWKLFEQKVGADTL--DSHPDIPELAE 332 (337)
Q Consensus 305 ~~ea~~Lf~~~~~~~~~--~~~~~l~~i~~ 332 (337)
.++..+.|+.+...... ..+-++..+++
T Consensus 412 ~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~ 441 (494)
T COG0464 412 LEERLEIFKIHLRDKKPPLAEDVDLEELAE 441 (494)
T ss_pred HHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence 99999999999874331 23445555554
No 217
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.32 E-value=0.0018 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|++|+|||||.+.+....
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998754
No 218
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.32 E-value=0.0013 Score=52.86 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=61.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC---ccCHHHHHHHHHHHhCC---C-CccccCCCHH----
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR---DLQLEKIQESIAKKIGL---F-NESWKNKSMQ---- 234 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~---- 234 (337)
..|-|++.+|.||||+|....-+.. .+-..+.++..-. ......++..+- .+.. . ...+...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 5788999999999999998887762 3333444444322 223333333320 0000 0 0000111111
Q ss_pred ---HHHHHHHHHhcCCc-EEEEEecCCCc-----cccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 235 ---EKAQEIFKILSKKK-FVLLLDDIWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 235 ---~~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
...+..++.+.... =|||||++-.. .+.+.+...+.....+ ..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~-~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED-LELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 12233444554444 49999998543 2233443334444445 79999999854
No 219
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.32 E-value=0.0016 Score=55.32 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998754
No 220
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.0016 Score=56.71 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc--EEEEEEec----CccCHHHHH--------------HHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD--FVIWVVVS----RDLQLEKIQ--------------ESIAKKI 221 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~--~~~wv~~~----~~~~~~~~~--------------~~i~~~l 221 (337)
...+++|+|.+|+|||||++.+........+. ++ .+.++.-. ...++.+.+ .+++..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 46799999999999999999998765211111 11 22232211 111222222 2233344
Q ss_pred CCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccccc---ccCCCCC--CCCCCcEEEEeeCChhHHhh
Q 045709 222 GLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLDQ---VGLPIPS--RTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 222 ~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~--~~~g~s~IiiTtr~~~v~~~ 291 (337)
+... ......+..+.++. +...|..++-+++||+.-...+... +...+.. ...+ ..||++|++......
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsHd~~~~~~ 181 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE-KTAFVVEHDIIMIDY 181 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHH
Confidence 3321 11123444444333 5567778889999999866543221 1111111 1135 689999998776543
No 221
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.30 E-value=0.0028 Score=59.55 Aligned_cols=89 Identities=25% Similarity=0.235 Sum_probs=48.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCccc-cCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNESW-KNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 241 (337)
++.++.++|.+|+||||++..++..+ .. ..+ .+..+++... +...+.+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46799999999999999999999887 32 222 3444444321 123444555666665432111 1123333333333
Q ss_pred HHhcCCcEEEEEecC
Q 045709 242 KILSKKKFVLLLDDI 256 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv 256 (337)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 45666655
No 222
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.30 E-value=0.0013 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+..++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999988
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.29 E-value=0.00065 Score=55.95 Aligned_cols=75 Identities=25% Similarity=0.352 Sum_probs=43.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
+..-+.++|.+|+|||.||..+.+.... .. ..+.|++ ..+++..+-. .. ....... +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~------~~~L~~~l~~----~~---~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFIT------ASDLLDELKQ----SR---SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEE------HHHHHHHHHC----CH---CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEee------cCceeccccc----cc---cccchhh----hcCc
Confidence 4567999999999999999999988732 22 3355654 3344444432 11 1112222 2233
Q ss_pred hcCCcEEEEEecCCCc
Q 045709 244 LSKKKFVLLLDDIWEL 259 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~ 259 (337)
+. +.=||||||+-..
T Consensus 106 l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYE 120 (178)
T ss_dssp HH-TSSCEEEETCTSS
T ss_pred cc-cccEeccccccee
Confidence 33 3458889998653
No 224
>PRK06696 uridine kinase; Validated
Probab=97.29 E-value=0.00048 Score=59.01 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHhc---CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 148 GLQLTFDRVWRCLME---EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.+.+++|.+.+.. .+..+|+|.|.+|+||||||+.+...+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777643 467899999999999999999999887
No 225
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0023 Score=58.27 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=61.4
Q ss_pred HHHHHHHHhcC--CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc--
Q 045709 153 FDRVWRCLMEE--HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-- 228 (337)
Q Consensus 153 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 228 (337)
+.++.+.|... +..++.|-|-+|+|||||..++..++. ..- .+.||+..... .. .+--+.+++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccceEE
Confidence 33444445442 678999999999999999999999982 233 78888766543 22 223455666543322
Q ss_pred -cCCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Q 045709 229 -KNKSMQEKAQEIFKILSKKKFVLLLDDIWEL 259 (337)
Q Consensus 229 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 259 (337)
...+.+...+.+.+ .++-|+|+|.+...
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT~ 180 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQTL 180 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEecccee
Confidence 23344444433333 67889999998653
No 226
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.0012 Score=53.11 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHH-HHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQE-KAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~l~~ 242 (337)
+..+++|+|.+|.|||||++.+.... ......+++........ ........++... + .+..+ ..-.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---q-lS~G~~~r~~l~~ 93 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVP---Q-LSGGQRQRVALAR 93 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEe---e-CCHHHHHHHHHHH
Confidence 55799999999999999999998765 23344444432211110 0011111121111 1 22222 2233556
Q ss_pred HhcCCcEEEEEecCCCccc---cccccCCCCC-CCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 243 ILSKKKFVLLLDDIWELVD---LDQVGLPIPS-RTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~-~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
.+...+-++++|+.....+ ...+...+.. ...+ ..++++|++......+ .++.+.+
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~-~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6666788999999875533 1122111111 1124 6899999987776543 2344444
No 227
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.28 E-value=0.0014 Score=53.62 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=46.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc-ccCCCHHHHHH-HHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNES-WKNKSMQEKAQ-EIFKI 243 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~l~~~ 243 (337)
++.++|++|+||||++..++.... ..-..++.++..... ...+.+...+...+.+... ....+...... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988772 222234445443221 2223333334443322110 12233444333 33333
Q ss_pred hcCCcEEEEEecCCC
Q 045709 244 LSKKKFVLLLDDIWE 258 (337)
Q Consensus 244 l~~k~~LlVlDdv~~ 258 (337)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 343443666776543
No 228
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.27 E-value=0.0017 Score=55.45 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998754
No 229
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.059 Score=49.95 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+-..++|+||.|||++...+++.+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 457799999999999999998877
No 230
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.27 E-value=0.00029 Score=59.88 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=59.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhc-cCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcccc-CCCHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFF-DTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWK-NKSMQEKAQEIFK 242 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~ 242 (337)
.+++.|+|++|.|||||.+.+..... ...+.| +|. .. .. ...+.++...++....... ..+...-.+++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~---v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSF---VPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCe---eEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 48899999999999999999874320 001111 111 00 00 0011112222221110001 1122222333333
Q ss_pred Hh--cCCcEEEEEecCCCccccc-------cccCCCCCC-CCCCcEEEEeeCChhHHhhc
Q 045709 243 IL--SKKKFVLLLDDIWELVDLD-------QVGLPIPSR-TSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 243 ~l--~~k~~LlVlDdv~~~~~~~-------~l~~~l~~~-~~g~s~IiiTtr~~~v~~~~ 292 (337)
.+ ..++-|++||+.....+.. .+...+... ..+ ..+|++|+..+++...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~-~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPEC-PRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEcChHHHHHhh
Confidence 22 4678999999987654321 122222221 223 5899999998886554
No 231
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.27 E-value=0.0015 Score=55.18 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||++.++...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998764
No 232
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.26 E-value=0.0018 Score=56.01 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||++.+....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999999998654
No 233
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.25 E-value=0.002 Score=55.24 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE------------ecCccCHHH------------------H
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV------------VSRDLQLEK------------------I 213 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~------------~~~~~~~~~------------------~ 213 (337)
...+++|.|.+|+|||||++.+..... .....+|+. .....++.+ .
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 122 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK 122 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 567999999999999999999987541 111222211 001111111 1
Q ss_pred HHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccccc---ccCCCCC-CCCCCcEEEEeeCC
Q 045709 214 QESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLDQ---VGLPIPS-RTSVSNKVVFTTRE 285 (337)
Q Consensus 214 ~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~-~~~g~s~IiiTtr~ 285 (337)
...+++.++... ......+..+..+ .+...+-.++-+|+||+.-+..+... +...+.. ...+ ..||++|++
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~-~tiii~sH~ 201 (224)
T cd03220 123 IDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG-KTVILVSHD 201 (224)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 122333333321 1112334444433 35666777889999999876543221 1111111 1235 689999998
Q ss_pred hhHHhh
Q 045709 286 FGVCGQ 291 (337)
Q Consensus 286 ~~v~~~ 291 (337)
.+.+..
T Consensus 202 ~~~~~~ 207 (224)
T cd03220 202 PSSIKR 207 (224)
T ss_pred HHHHHH
Confidence 776544
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.25 E-value=0.00041 Score=54.63 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 147 VGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 147 vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
||....+.++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777766643 445677899999999999999998876
No 235
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.24 E-value=0.0038 Score=56.76 Aligned_cols=94 Identities=13% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 233 (337)
...++-|+|.+|+|||+|+..++-.... ....-..++|++....+++.++ .++++.++...+.. ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 5678999999999999999988754411 0112237999999998888776 45677665432111 12344
Q ss_pred HHHHHHHH---HHh-cCCcEEEEEecCCC
Q 045709 234 QEKAQEIF---KIL-SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~~~l~---~~l-~~k~~LlVlDdv~~ 258 (337)
++....+. ..+ ..+.-|||+|.+-.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 44433332 233 34566999999854
No 236
>PTZ00035 Rad51 protein; Provisional
Probab=97.24 E-value=0.0056 Score=55.75 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=58.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (337)
...++.|+|.+|+|||+|+..++-.... ....-..++|++....++..++ .++++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 5789999999999999999988765410 0112346779998877777664 4556665543211 012333
Q ss_pred HHHHHHH---HHHh-cCCcEEEEEecCCC
Q 045709 234 QEKAQEI---FKIL-SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~~~~~l---~~~l-~~k~~LlVlDdv~~ 258 (337)
++....+ ...+ ..+--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 4443333 3333 34556999999864
No 237
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.24 E-value=0.0023 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||++.+....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356799999999999999999997754
No 238
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.24 E-value=0.0015 Score=55.64 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+..-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999998754
No 239
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.24 E-value=0.002 Score=55.07 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356799999999999999999997654
No 240
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0027 Score=62.91 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=90.2
Q ss_pred ccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc-----EEEEEEecCccCHHHHHHHHHH
Q 045709 145 TVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-----FVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
.++||++++.+++..|......--.++|.+|+|||+++.-++.+.- .+..+ ..++ +. ++..+
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~-sL----D~g~L------ 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIY-SL----DLGSL------ 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEE-Ee----cHHHH------
Confidence 3799999999999999775555556899999999999988887762 22221 1111 00 11111
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCcc--------ccccccCCCCCCCCCCcEEE-EeeCChhHH
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILS-KKKFVLLLDDIWELV--------DLDQVGLPIPSRTSVSNKVV-FTTREFGVC 289 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~l~~~l~~~~~g~s~Ii-iTtr~~~v~ 289 (337)
..... -.-..++..+.+.+.++ .++.+|++|.++..- ..+.-...-|....|.-+.| -||-++. -
T Consensus 238 -vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY-R 312 (786)
T COG0542 238 -VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY-R 312 (786)
T ss_pred -hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH-H
Confidence 11111 22345666666666554 458999999997541 12221111122223323444 4554432 1
Q ss_pred hhc-------cCCceeecCCCCHHHHHHHHhHhh
Q 045709 290 GQM-------EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 290 ~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+ .....+.+..-+.+++..++....
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111 134678899999999999987654
No 241
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.24 E-value=0.0091 Score=51.21 Aligned_cols=164 Identities=14% Similarity=0.201 Sum_probs=89.9
Q ss_pred CccccchhhHHH---HHHHHhcC------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHH
Q 045709 144 PTVVGLQLTFDR---VWRCLMEE------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 144 ~~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 214 (337)
++++|.++...+ |++.|.++ .++.|..+|++|.|||.+|+.+++.. +-.|-. +. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~-----vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLL-----VK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEE-----ec----hHHH-
Confidence 457898776653 56666653 47889999999999999999999877 333321 11 1111
Q ss_pred HHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc----------ccc----ccccCCCC--CCCCCCc
Q 045709 215 ESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWEL----------VDL----DQVGLPIP--SRTSVSN 277 (337)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~----~~l~~~l~--~~~~g~s 277 (337)
|.+..| +....+..+.+.- +.-+|++.||+++.. .+. ..+..-+. ..+-| -
T Consensus 188 --iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG-V 255 (368)
T COG1223 188 --IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG-V 255 (368)
T ss_pred --HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc-e
Confidence 111111 1122333333332 346899999998743 111 11211111 12234 4
Q ss_pred EEEEeeCChhHHhhc-c--CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 278 KVVFTTREFGVCGQM-E--AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 278 ~IiiTtr~~~v~~~~-~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
.-|-.|.+.++.... . ....|+...-+++|-.+++..++-.--......+..+++
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~ 313 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAA 313 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 445555555543221 1 234677777789999999998873222223344555543
No 242
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.23 E-value=0.0031 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|++|+|||||++.+..-.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998754
No 243
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.0022 Score=63.65 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|.+|+|||||.+.+....
T Consensus 26 ~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 26 PGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998864
No 244
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0019 Score=59.28 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=36.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGL 223 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 223 (337)
+..++.++|++|+||||++.++..... .......+..++.... ....+-+....+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 467999999999999999999988762 1112234555554332 2233444444555554
No 245
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.21 E-value=0.0041 Score=56.31 Aligned_cols=93 Identities=17% Similarity=0.277 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----CCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKS 232 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 232 (337)
...++-|+|.+|+|||+|+.+++.... ... .-..++|++....+++..+. ++++.++...+.. ...+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 578999999999999999999987652 111 12479999998888777665 4445554322110 1112
Q ss_pred HH---HHHHHHHHHhcC--CcEEEEEecCCC
Q 045709 233 MQ---EKAQEIFKILSK--KKFVLLLDDIWE 258 (337)
Q Consensus 233 ~~---~~~~~l~~~l~~--k~~LlVlDdv~~ 258 (337)
.. .....+...+.. +--|||+|.+-.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 12 234445555543 345999999754
No 246
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.20 E-value=0.0026 Score=55.54 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=66.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C---cEEEEEEecCcc------CHH-----------HHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F---DFVIWVVVSRDL------QLE-----------KIQESIAKK 220 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~~~~~------~~~-----------~~~~~i~~~ 220 (337)
....+++|+|.+|+|||||++.++.......+. + ..+.++.-.... +.. .-...+++.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR 107 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence 357899999999999999999998764211111 0 112232211100 111 112233444
Q ss_pred hCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCcEEEEeeCChhHHhh
Q 045709 221 IGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 221 l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s~IiiTtr~~~v~~~ 291 (337)
++... ......+..+..+ .+...+..++-+|+||+.-+..+.. .+...+.. ...| ..||++|++.+....
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tiiivsH~~~~i~~ 186 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD-CAVLMVSHDLHLVMA 186 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHH
Confidence 44321 1112334433333 3455666778899999987654322 11111211 1125 678888888776543
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.003 Score=61.42 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.++...
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998765
No 248
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.001 Score=52.67 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=34.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCC
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFN 225 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 225 (337)
+|.|-|++|+||||+|+.+.+.+ .-.+ .+...++++|+...+.+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999988 2222 133467888888887754
No 249
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.0019 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|.|.+|+||||||..+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 250
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0025 Score=56.02 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH-hCCCCccccCCCHH---HHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK-IGLFNESWKNKSMQ---EKAQE 239 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~~ 239 (337)
...++=|+|+.|+||||+|.+++-.. +..-..++|++..+.+++..+. +++.. +..-. .....+.+ +.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHH-HHHHhhhccee-EecCCCHHHHHHHHHH
Confidence 56889999999999999999988877 4455589999999988887754 34433 22100 00222333 33344
Q ss_pred HHHHhcCCcEEEEEecCCCc
Q 045709 240 IFKILSKKKFVLLLDDIWEL 259 (337)
Q Consensus 240 l~~~l~~k~~LlVlDdv~~~ 259 (337)
+......+--|+|+|.+-..
T Consensus 134 ~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 134 LARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHhccCCCCEEEEecCccc
Confidence 44444444569999988643
No 251
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.18 E-value=0.0046 Score=53.10 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=54.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc-----------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE----------------- 226 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 226 (337)
...++.|.|.+|+|||+|+..+..... ..-..++|++.... ...+... +.+++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 578999999999999999998776542 23456788876443 3333322 233322100
Q ss_pred -----cccCCCHHHHHHHHHHHhcC---CcEEEEEecCCC
Q 045709 227 -----SWKNKSMQEKAQEIFKILSK---KKFVLLLDDIWE 258 (337)
Q Consensus 227 -----~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~ 258 (337)
.....+.++....+.+.++. +.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~ 132 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA 132 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence 00123456666666665543 446889998754
No 252
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.0025 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++|+|.+|+|||||++.++.-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 99999999999999999998654
No 253
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.17 E-value=0.0036 Score=52.33 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=45.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCc---EEEEEEecCccCHHHHHHHHHHHhC--CCCccccCCCHHHHHHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFD---FVIWVVVSRDLQLEKIQESIAKKIG--LFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~l~ 241 (337)
+|+|.|.+|+||||||+.+...+. ..... .....+............ ...... .........+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhh-HhhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999999883 12222 233333333222222211 111111 1111224566777777777
Q ss_pred HHhcCCcEEE
Q 045709 242 KILSKKKFVL 251 (337)
Q Consensus 242 ~~l~~k~~Ll 251 (337)
....++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665433
No 254
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.17 E-value=0.00053 Score=65.52 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=40.2
Q ss_pred ccccchhhHHHHHHHHh------cCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLM------EEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++|.++.+++|++.|. +.+.+++.++|++|+||||||+.+.+-+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999883 3567899999999999999999999877
No 255
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.17 E-value=0.0048 Score=55.69 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=58.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC---CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-------cCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT---PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-------KNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 233 (337)
...++-|+|.+|+|||+|+.+++...... ...-..++|++....++..++. +++..++...... ...+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 57889999999999999999998765210 0112379999998888877654 4455554321100 11121
Q ss_pred H---HHHHHHHHHhcCC---cEEEEEecCCC
Q 045709 234 Q---EKAQEIFKILSKK---KFVLLLDDIWE 258 (337)
Q Consensus 234 ~---~~~~~l~~~l~~k---~~LlVlDdv~~ 258 (337)
+ .....+.+.+... .-+||+|.+-.
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 1 1234455555432 45999998854
No 256
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.17 E-value=0.004 Score=54.55 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C---------cEEEEEEecCc----cCHH------------HHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F---------DFVIWVVVSRD----LQLE------------KIQE 215 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f---------~~~~wv~~~~~----~~~~------------~~~~ 215 (337)
.+..+++|+|.+|+|||||++.+........+. | ..+.|+.-... .++. .-..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 115 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL 115 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHH
Confidence 356799999999999999999998754211111 1 11233321110 1111 1223
Q ss_pred HHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCcEEEEeeCCh
Q 045709 216 SIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSNKVVFTTREF 286 (337)
Q Consensus 216 ~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s~IiiTtr~~ 286 (337)
.++..++... ......+..+..+ .+...+...+-+|+||+.-+..+.. .+...+.. ...+ ..||++|++.
T Consensus 116 ~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~ 194 (257)
T PRK11247 116 QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDV 194 (257)
T ss_pred HHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCH
Confidence 3444554432 1112334433333 3455666778899999886553321 11111211 1124 6889999987
Q ss_pred hHHh
Q 045709 287 GVCG 290 (337)
Q Consensus 287 ~v~~ 290 (337)
....
T Consensus 195 ~~~~ 198 (257)
T PRK11247 195 SEAV 198 (257)
T ss_pred HHHH
Confidence 6543
No 257
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.016 Score=52.40 Aligned_cols=156 Identities=6% Similarity=0.024 Sum_probs=82.7
Q ss_pred hhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC----C
Q 045709 151 LTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF----N 225 (337)
Q Consensus 151 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----~ 225 (337)
...+.|.+.+..++ ...+.+.|+.|+||+++|..++....- ...... .........+.+...-... .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34556666666654 467889999999999999999887621 111100 0111111111111110000 0
Q ss_pred c-cccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cCC
Q 045709 226 E-SWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EAH 295 (337)
Q Consensus 226 ~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~~ 295 (337)
+ .-.....++ ++.+.+.+ .+++-++|+|+++... ....+...+-.-..+ +.+|++|.+. .+...+ +..
T Consensus 81 p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~-~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 PIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPN-TYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred cccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhCchHHHhhc
Confidence 0 001112222 23333333 2556688899998653 233332223222234 6777777654 343332 234
Q ss_pred ceeecCCCCHHHHHHHHhHhh
Q 045709 296 RSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+.+.+++.++..+.+....
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHh
Confidence 688999999999998888764
No 258
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.17 E-value=0.0046 Score=55.66 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|++|+|||||.+.+..-.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999998754
No 259
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.15 E-value=0.0011 Score=57.91 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred chhhHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 045709 10 TCDDTISRCLDCTVRKAGYVCNLQDNIRALKEEVRRLTEVRNDVKIRIIVAEQQQMKPLEQVHGWISRVQEVGSKVEKLK 89 (337)
Q Consensus 10 ~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~l~~~a~~~ed~l 89 (337)
.++.+++.|-.+.......+..++.+++-++.+|+.++.||+.+ +++.+.+. +..+....++...||++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeee
Confidence 36889999999988888888999999999999999999999986 56655444 348899999999999999999
Q ss_pred hhcC
Q 045709 90 EEEY 93 (337)
Q Consensus 90 d~~~ 93 (337)
|.+.
T Consensus 370 DaCi 373 (402)
T PF12061_consen 370 DACI 373 (402)
T ss_pred ehhh
Confidence 9975
No 260
>PRK10867 signal recognition particle protein; Provisional
Probab=97.15 E-value=0.0027 Score=59.49 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999888887766
No 261
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.14 E-value=0.0029 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++.++.++|.+|+||||.+..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998888775
No 262
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.00087 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|.+|+|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998765
No 263
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.14 E-value=0.0045 Score=55.52 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
..+++-|+|+.|+||||||..+....+ ..-..++|+...+.++.. .+..++...+.. ...+.++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 567999999999999999999988873 335678999988776553 445555543321 234456666666
Q ss_pred HHHhcCC-cEEEEEecCCCc
Q 045709 241 FKILSKK-KFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~~k-~~LlVlDdv~~~ 259 (337)
...++.. .-++|+|.|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 6666544 458899988654
No 264
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.14 E-value=0.0043 Score=53.09 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|.+|+|||||++.+....
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998754
No 265
>PRK04328 hypothetical protein; Provisional
Probab=97.14 E-value=0.003 Score=55.02 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc----------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES---------------- 227 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 227 (337)
...++.|.|.+|+|||+|+.++.... ...-..++|++.... +..+.+ .+++++.....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 57899999999999999999977664 233456788887653 333333 23333321000
Q ss_pred ---------c---cCCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 045709 228 ---------W---KNKSMQEKAQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 228 ---------~---~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
. ...+.......+.+.+.. +.-++|+|.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 0 112345556666666543 455899999853
No 266
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0017 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++.+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999988
No 267
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.13 E-value=0.0032 Score=55.15 Aligned_cols=93 Identities=18% Similarity=0.356 Sum_probs=55.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC-cEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc----ccCCCHHH-
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDL-QLEKIQESIAKKIGLFNES----WKNKSMQE- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 235 (337)
.+...++|+|.+|+|||||++.+++.. ..+| +.++++-+.... .+.++...+...-...... ..+.+...
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 356789999999999999999999988 3333 355566665543 4555555555432111100 01111111
Q ss_pred -----HHHHHHHHh--c-CCcEEEEEecCCC
Q 045709 236 -----KAQEIFKIL--S-KKKFVLLLDDIWE 258 (337)
Q Consensus 236 -----~~~~l~~~l--~-~k~~LlVlDdv~~ 258 (337)
..-.+.+++ + ++.+||++||+-.
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 122234444 3 8899999999854
No 268
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.044 Score=54.77 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++++|++|+||||.+.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999988766
No 269
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.12 E-value=0.0037 Score=54.64 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||.+.++.-.
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356799999999999999999997765
No 270
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.12 E-value=0.0042 Score=61.73 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||.+.+....
T Consensus 27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 27 EDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356789999999999999999998764
No 271
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.0043 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||++.+....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 356799999999999999999998765
No 272
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.11 E-value=0.0032 Score=55.91 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
+..++.|+|++|+||||++..++..+. ....-..+..++..... .....+......++.+.. ...+...+...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 457999999999999999999988772 11112345666654321 122333334444444321 2233444443333
Q ss_pred HhcCCcEEEEEecC
Q 045709 243 ILSKKKFVLLLDDI 256 (337)
Q Consensus 243 ~l~~k~~LlVlDdv 256 (337)
.+.+ .=+|++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 273
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.10 E-value=0.00094 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|.|+|++|+||||+|+.+...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998876
No 274
>PRK14974 cell division protein FtsY; Provisional
Probab=97.10 E-value=0.0071 Score=54.85 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCcc-ccCCCHHHHHHH-H
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNES-WKNKSMQEKAQE-I 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~-l 240 (337)
+..++.++|++|+||||++..++..+. ...+ .++.+..... .....-+...+..++.+... ....+....... +
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 467999999999999999998888772 2233 3444443211 12223345566666543211 122233332222 2
Q ss_pred HHHhcCCcEEEEEecCCC
Q 045709 241 FKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~~k~~LlVlDdv~~ 258 (337)
........-++++|..-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 221222223888887644
No 275
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.10 E-value=0.0052 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||.+.+....
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999999998755
No 276
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.02 Score=49.04 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=83.6
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec-CccCHHHHHHHHHHHhCCCCccccCC-CHHHHHHH
Q 045709 162 EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS-RDLQLEKIQESIAKKIGLFNESWKNK-SMQEKAQE 239 (337)
Q Consensus 162 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~ 239 (337)
..+.+++.++|.-|+|||.+.+.+.... .+.-.++ +.++ +..+...+...++..+.... .+... ..+...+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~---~~d~~~~--v~i~~~~~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL---NEDQVAV--VVIDKPTLSDATLLEAIVADLESQP-KVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc---CCCceEE--EEecCcchhHHHHHHHHHHHhccCc-cchhHHHHHHHHHH
Confidence 3456799999999999999999665554 2222222 3333 34567778888888887622 11111 22333344
Q ss_pred HHHHh-cCCc-EEEEEecCCCcc--ccccccCCC---CCCCCCCcEEEEeeCCh-------hHHhhcc-CCce-eecCCC
Q 045709 240 IFKIL-SKKK-FVLLLDDIWELV--DLDQVGLPI---PSRTSVSNKVVFTTREF-------GVCGQME-AHRS-FKVECL 303 (337)
Q Consensus 240 l~~~l-~~k~-~LlVlDdv~~~~--~~~~l~~~l---~~~~~g~s~IiiTtr~~-------~v~~~~~-~~~~-~~l~~L 303 (337)
+.... ++++ ..+++||.+... .++.++... .+.... -+|+..-..+ .+..... .... |+++|+
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 44444 4666 899999987642 222221111 111111 1233322210 1111111 1233 899999
Q ss_pred CHHHHHHHHhHhhCCC
Q 045709 304 RYDDAWKLFEQKVGAD 319 (337)
Q Consensus 304 ~~~ea~~Lf~~~~~~~ 319 (337)
+.++...++..+..+.
T Consensus 201 ~~~~t~~yl~~~Le~a 216 (269)
T COG3267 201 TEAETGLYLRHRLEGA 216 (269)
T ss_pred ChHHHHHHHHHHHhcc
Confidence 9999999999887544
No 277
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.10 E-value=0.0044 Score=53.29 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998877
No 278
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.016 Score=49.41 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=91.9
Q ss_pred ccc-chhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 146 VVG-LQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 146 ~vG-r~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+| -+..+.+|.+-+.- .+++-+.++|++|.|||-||+.+++.- .+.|+.+|..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 455 46666666554421 356778999999999999999998765 2345566643
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCccc----------------ccccc---CCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELVD----------------LDQVG---LPIPS 271 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~---~~l~~ 271 (337)
++.+..+ +. .....+.|.-.- ..-+.++..|++++... .-++. .-|..
T Consensus 216 elvqk~i---ge---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ELVQKYI---GE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHHh---hh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 2222211 10 011222222211 24577888898875411 11111 12222
Q ss_pred CCCCCcEEEEeeCChhHHhh--cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHHh
Q 045709 272 RTSVSNKVVFTTREFGVCGQ--ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAETL 334 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i 334 (337)
. +. -+||+.|..-++... +. -+..|+.++-+++.-.++++-+.-.-+...--++..||+++
T Consensus 284 t-kn-ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 284 T-KN-IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred c-cc-eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 2 33 688887765555322 12 24568888888888888887665433333345677777765
No 279
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.09 E-value=0.003 Score=63.04 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
..+++-|+|.+|+|||||+..++.... ..-..++|+.....++. ..+++++...+.. ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 578999999999999999988766652 23356789988776663 3666776643221 233455556666
Q ss_pred HHHhc-CCcEEEEEecCCC
Q 045709 241 FKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~ 258 (337)
...+. ++.-|||+|.+..
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 66554 4566899999863
No 280
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.08 E-value=0.0031 Score=54.52 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||.+.+....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999998754
No 281
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0021 Score=62.29 Aligned_cols=74 Identities=27% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc--CHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL--QLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
..+-|.|.|..|+|||+|++.+++.+. ++..-.+.+++++.-. .+..++..+- ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 456788999999999999999999983 5555566777766421 1222211111 1223
Q ss_pred HHhcCCcEEEEEecCCC
Q 045709 242 KILSKKKFVLLLDDIWE 258 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~ 258 (337)
..+...+-++||||++.
T Consensus 489 e~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHhhCCcEEEEcchhh
Confidence 34556788999999974
No 282
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.07 E-value=0.0063 Score=51.40 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|.|.+|+|||||++.+....
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356899999999999999999997654
No 283
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.07 E-value=0.00023 Score=59.16 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=56.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhc-cCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-cCCCHHHHHHHHHHHh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFF-DTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-KNKSMQEKAQEIFKIL 244 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l 244 (337)
++.|.|.+|.||||+.+.+.-... ...+.| +| ... .. -.....++..++...... ...+...-...+...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~---v~--a~~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSF---VP--AES-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCC---ee--ehh-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHH
Confidence 467999999999999999873221 001111 11 100 00 000011111111110000 1112222233344444
Q ss_pred cC--CcEEEEEecCCCccccc-------cccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 245 SK--KKFVLLLDDIWELVDLD-------QVGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 245 ~~--k~~LlVlDdv~~~~~~~-------~l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
.. ++-|+++|+.-...+.. .+...+.. ..+ +.+|++|+..++...+
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~-~~iii~TH~~~l~~~~ 128 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIG-ALTLFATHYHELTKLA 128 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCC-CeEEEEecHHHHHHHh
Confidence 43 78999999986543321 11111211 135 7899999998876544
No 284
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.06 E-value=0.0015 Score=58.59 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=31.9
Q ss_pred cchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHH
Q 045709 148 GLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQI 185 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v 185 (337)
+|..+..--+++|..+....|.+.|.+|.|||-||...
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHH
Confidence 46666666678888899999999999999999888664
No 285
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.01 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+-|.++|++|.|||-||+.|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45678999999999999999999988
No 286
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.05 E-value=0.0039 Score=52.43 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||.+.+....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999997754
No 287
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.009 Score=58.56 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=58.8
Q ss_pred CccccchhhHHHHHHHHhc---------C---CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME---------E---HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.++=|-++.+..|.+-+.- . +..-|.++|++|.|||-||+.|+..+ .- -|+++..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---sL-----~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---SL-----NFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---ee-----eEEeecCH----
Confidence 4455778888888776532 1 35678899999999999999998887 22 34455443
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL 259 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 259 (337)
+++..- -..+.+.+.+.+.+.=.-++|+|.||++++.
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222111 1122222333333333468999999999864
No 288
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0078 Score=59.43 Aligned_cols=152 Identities=14% Similarity=0.193 Sum_probs=85.0
Q ss_pred ccccchh---hHHHHHHHHhcC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 145 TVVGLQL---TFDRVWRCLMEE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 145 ~~vGr~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
++.|-++ ++.++++.|.++ -++=+.++|++|+|||-||+.++... .-. |++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVP-----F~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVP-----FFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCc-----eeeechH-----
Confidence 4667665 455566666653 24568899999999999999998876 223 3444432
Q ss_pred HHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc-----------------ccccccCCCCCCCC
Q 045709 213 IQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV-----------------DLDQVGLPIPSRTS 274 (337)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~~ 274 (337)
++++.+.... ..+.+.|...- ...++++.+|+++... .+.++...+.....
T Consensus 379 ---EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 2222221110 12233333332 3568899999886431 13333222221122
Q ss_pred CCcEEEE-eeCChhHHhh--cc---CCceeecCCCCHHHHHHHHhHhhCCCC
Q 045709 275 VSNKVVF-TTREFGVCGQ--ME---AHRSFKVECLRYDDAWKLFEQKVGADT 320 (337)
Q Consensus 275 g~s~Iii-Ttr~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 320 (337)
.+.-|++ +|...++.+. +. -+..+.++.-+.....++|.-++....
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence 2023333 4444444221 11 246788888888999999998886544
No 289
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.05 E-value=0.0024 Score=53.71 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....+++|+|.+|+|||||.+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999876
No 290
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.04 E-value=0.006 Score=52.45 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
...++.|.|.+|+|||||+.+++.... +.. ..++|++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 467999999999999999877666552 122 4456666433 455666655
No 291
>PRK06547 hypothetical protein; Provisional
Probab=97.04 E-value=0.0011 Score=54.14 Aligned_cols=33 Identities=30% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 157 WRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 157 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+......+|+|.|.+|+||||+|+.+....
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455678899999999999999999998865
No 292
>PRK13409 putative ATPase RIL; Provisional
Probab=97.04 E-value=0.006 Score=59.91 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||++.+....
T Consensus 97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356799999999999999999997754
No 293
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.03 E-value=0.0057 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|.+|+|||||.+.++...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999998754
No 294
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.03 E-value=0.0055 Score=54.39 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+.+|+|.|.+|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876655
No 295
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0049 Score=51.90 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCccccccccC------CCCCCCCCCcEEEEeeCChhHHhhccCCcee
Q 045709 234 QEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGL------PIPSRTSVSNKVVFTTREFGVCGQMEAHRSF 298 (337)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~------~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~ 298 (337)
+.....+.+.+--++-|.|||+.++-.+.+.+.. .+. ..+ +-+++.|+.+.++....++.+|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~-~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEG-RGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCC-CeEEEEecHHHHHhhcCCCEEE
Confidence 3445567777777888999999998766555421 122 235 7788889999998887655544
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.02 E-value=0.003 Score=59.82 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=56.2
Q ss_pred HHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---c
Q 045709 155 RVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---K 229 (337)
Q Consensus 155 ~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 229 (337)
.|-+.|.. ....++.|.|.+|+|||||+.+++.... ..-..++|++.... ...+.. -+..++...+.. .
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~ 141 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeC
Confidence 34344443 2567999999999999999999988772 22346788876543 333322 244555422111 1
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 045709 230 NKSMQEKAQEIFKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 230 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (337)
..+.+.+...+. ..+.-++|+|.+..
T Consensus 142 e~~l~~i~~~i~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 142 ETNLEAILATIE---EEKPDLVVIDSIQT 167 (446)
T ss_pred CCCHHHHHHHHH---hhCCCEEEEechhh
Confidence 233443333332 23566999999864
No 297
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.01 E-value=0.0049 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|.+|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 298
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0043 Score=53.44 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|.+|+|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999998765
No 299
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.00 E-value=0.0037 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++|+|++|.|||||.+.+....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3899999999999999999987543
No 300
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.00 E-value=0.00068 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|.|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 301
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.02 Score=51.57 Aligned_cols=152 Identities=10% Similarity=0.058 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhcCCC-eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC-----
Q 045709 151 LTFDRVWRCLMEEHA-GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF----- 224 (337)
Q Consensus 151 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----- 224 (337)
...+.+...+..++. ..+.++|+.|+||+++|..++....- .....+- . ......+. ...-+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~-------~---c~~c~~~~-~g~HPD~~~i 78 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAA-------A---QRTRQLIA-AGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCC-------c---chHHHHHh-cCCCCCEEEE
Confidence 445667777766554 46889999999999999999876621 1111100 0 00000010 00000
Q ss_pred --CccccC-----CCHHHHHHHHHHHh-----cCCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCCh-hHH
Q 045709 225 --NESWKN-----KSMQEKAQEIFKIL-----SKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREF-GVC 289 (337)
Q Consensus 225 --~~~~~~-----~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~-~v~ 289 (337)
.+.... .-..+.++.+.+.+ .+++-++|||+++.... -..+...+-.-..+ +.+|++|.+. .+.
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-~~fiL~~~~~~~lL 157 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG-RYLWLISAQPARLP 157 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC-CeEEEEECChhhCc
Confidence 000000 00122233333433 24556999999986532 22222222111234 6777777653 343
Q ss_pred hhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 290 GQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 290 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
..+ +....+.+.+++.+++.+.+...
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 332 23457899999999998888754
No 302
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.99 E-value=0.0037 Score=60.84 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=38.6
Q ss_pred CCccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|....+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35689999999988887753 344567899999999999999998875
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.99 E-value=0.006 Score=58.29 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=66.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE-----------ecCccCHHHH------------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV-----------VSRDLQLEKI------------------ 213 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-----------~~~~~~~~~~------------------ 213 (337)
....+++|+|.+|+|||||++.++..... ....+++. .....++.+.
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P----~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~ 123 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMP----NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI 123 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCC----CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence 35789999999999999999999876521 11122211 0111111111
Q ss_pred HHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCC-CCCCCcEEEEeeCC
Q 045709 214 QESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS-RTSVSNKVVFTTRE 285 (337)
Q Consensus 214 ~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~-~~~g~s~IiiTtr~ 285 (337)
...++..++... ......+..+..+. |...|...+-+|+||+.-+..+.. .+...+.. ...| ..||++|++
T Consensus 124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G-~TIIIVSHd 202 (549)
T PRK13545 124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQG-KTIFFISHS 202 (549)
T ss_pred HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEECC
Confidence 122333343321 11233444444443 556667788899999986653322 11111111 1235 789999998
Q ss_pred hhHHh
Q 045709 286 FGVCG 290 (337)
Q Consensus 286 ~~v~~ 290 (337)
.....
T Consensus 203 l~~i~ 207 (549)
T PRK13545 203 LSQVK 207 (549)
T ss_pred HHHHH
Confidence 76543
No 304
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0055 Score=56.29 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|+++|++|+||||++..++..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 34799999999999999999998877
No 305
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.98 E-value=0.0025 Score=59.52 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=36.2
Q ss_pred CCccccchhhHHHHHHHHhc-------C---------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLME-------E---------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.+..++.+...+.+ . ..+.+.++|++|+|||+||+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999888877555421 0 23568999999999999999998776
No 306
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.98 E-value=0.0011 Score=60.62 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
.....+.|.|+.|+||||+++.+.+.. ..+....++. +.++. +-..... ..+ ..... ...........++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~--E~~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPI--EYVHRNK-RSL-INQRE-VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCCh--hhhccCc-cce-EEccc-cCCCCcCHHHHHHH
Confidence 346899999999999999999988776 3333334443 22211 1000000 000 00000 11112234555777
Q ss_pred HhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 243 ILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
.|+..+=.|++|++.+.+.+..... ....| ..|+.|....+..
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~---aa~tG-h~v~~T~Ha~~~~ 233 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALT---AAETG-HLVFGTLHTNSAA 233 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHH---HHHcC-CcEEEEEcCCCHH
Confidence 8888899999999987766554322 22345 5677777665443
No 307
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.98 E-value=0.0066 Score=53.55 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=29.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 205 (337)
+.+++.++|++|+||||++..++..+ . ..-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC
Confidence 46899999999999999999998877 2 222356666654
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0016 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0011 Score=52.43 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|.|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999888
No 310
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0076 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+....
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 356789999999999999999998765
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.96 E-value=0.0073 Score=52.95 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
...++.|.|.+|+|||+|+.+++.... ..-..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 578999999999999999999876652 2344677888764
No 312
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.96 E-value=0.0085 Score=51.84 Aligned_cols=174 Identities=10% Similarity=0.143 Sum_probs=96.7
Q ss_pred cccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccC---CCCCcEEEEEEecCc----------c----
Q 045709 146 VVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDT---PNHFDFVIWVVVSRD----------L---- 208 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~----------~---- 208 (337)
+.++++....+.+.......+-+.++|++|.||-|.+..+.++.... +-.-+..-|.+.+.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 56677777777776655678899999999999999988888776421 112334444433322 0
Q ss_pred -------CHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcE-EEEEecCCCc--cccccccCCCCCCCCCCcE
Q 045709 209 -------QLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKF-VLLLDDIWEL--VDLDQVGLPIPSRTSVSNK 278 (337)
Q Consensus 209 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~ 278 (337)
.-.-+.+++++......+- +.-..+.| ++|+-.+++. +....++.....-.+. +|
T Consensus 95 tPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~-~R 159 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN-CR 159 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC-ce
Confidence 0112222333322211100 00012344 5666666543 2222232222222344 78
Q ss_pred EEEeeCChh-HHhhccC-CceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHHhhcC
Q 045709 279 VVFTTREFG-VCGQMEA-HRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAETLAKD 337 (337)
Q Consensus 279 IiiTtr~~~-v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~k 337 (337)
+|+...+-+ +...+.+ .-.++++..+++|-...+++.+-..+...| ++++.+|++|
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~k 217 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEK 217 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHH
Confidence 887655422 2222222 245789999999999999998876664444 5677777654
No 313
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.96 E-value=0.0042 Score=51.35 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=31.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQES 216 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 216 (337)
++.|.|.+|+|||+|+.++..... ..-..++|++... +...+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877762 2334577887654 34444433
No 314
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.0087 Score=59.52 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc---EEEEEEecC--cc----CHH------------HHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSR--DL----QLE------------KIQESIAK 219 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~--~~----~~~------------~~~~~i~~ 219 (337)
....+++|+|++|+|||||.+.+........+. +. .+.|+.-.. .. ++. .-...++.
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 356799999999999999999998765211121 11 122322110 00 111 11223344
Q ss_pred HhCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCChhHHhh
Q 045709 220 KIGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 220 ~l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~~v~~~ 291 (337)
.++... ......+..+..+. |...+..++-+|+||+.-+..+.. .+...+... .| .||++|++......
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g--tvi~vSHd~~~~~~ 492 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG--ALVVVSHDRHLLRS 492 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC--eEEEEeCCHHHHHH
Confidence 444421 11233444444433 555667788999999876654321 111112121 24 68889998876544
Q ss_pred c
Q 045709 292 M 292 (337)
Q Consensus 292 ~ 292 (337)
+
T Consensus 493 ~ 493 (638)
T PRK10636 493 T 493 (638)
T ss_pred h
Confidence 3
No 315
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.034 Score=50.07 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=80.4
Q ss_pred hhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC-----
Q 045709 151 LTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF----- 224 (337)
Q Consensus 151 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----- 224 (337)
...+.+.+.+..++ .+.+.+.|+.|+||+++|..+.....-. +.-.. .+ ........+.......
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~-~~~~~----~C----g~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ-NYQSE----AC----GFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC-CCCCC----CC----CCCHHHHHHHcCCCCCEEEEe
Confidence 34556666665554 4578899999999999999998766211 11000 00 0111111111110000
Q ss_pred Ccc-ccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cC
Q 045709 225 NES-WKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EA 294 (337)
Q Consensus 225 ~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~ 294 (337)
... -.....++. +.+.+.+ .++.-++|+|+++... ....+...+-.-..+ +.+|++|.+. .+...+ +.
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPN-CLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhc
Confidence 000 011222332 3333333 2445588999998653 233332223222234 6666666654 444333 33
Q ss_pred CceeecCCCCHHHHHHHHhHh
Q 045709 295 HRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
...+.+.+++.+++.+.+...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHc
Confidence 467899999999999888764
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.94 E-value=0.00084 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999998776
No 317
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.94 E-value=0.00091 Score=56.64 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=24.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+|+|.|.+|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998876
No 318
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.94 E-value=0.0046 Score=57.73 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.++|.+|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998766
No 319
>PHA00729 NTP-binding motif containing protein
Probab=96.93 E-value=0.0014 Score=55.52 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 156 VWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 156 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.+.+...+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555566789999999999999999998875
No 320
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.93 E-value=0.0061 Score=55.40 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=34.0
Q ss_pred cccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++|....+.++.+.+.. ....-|.|+|.+|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777666643 345667899999999999999998765
No 321
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.93 E-value=0.0053 Score=58.22 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=55.2
Q ss_pred HHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---
Q 045709 154 DRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW--- 228 (337)
Q Consensus 154 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 228 (337)
..|-+.|.. ....++.|.|.+|+|||||+.++..... ..-..++|++.... ...+.. -+..++...+..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 344444543 3678999999999999999999987762 22235778876543 333322 223444322111
Q ss_pred cCCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 045709 229 KNKSMQEKAQEIFKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 229 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 258 (337)
...+.+.+...+. +.+.-++|+|.+..
T Consensus 155 ~e~~~~~I~~~i~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 155 SETNWEQICANIE---EENPQACVIDSIQT 181 (454)
T ss_pred CCCCHHHHHHHHH---hcCCcEEEEecchh
Confidence 2233433333332 23566899998864
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.92 E-value=0.0034 Score=55.13 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=66.7
Q ss_pred ccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc
Q 045709 147 VGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE 226 (337)
Q Consensus 147 vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 226 (337)
.|...+..+.+..+......++.|.|..|+||||++..+.... ...-..++.+.-+....... ..++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~-----~~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPG-----INQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCC-----ceEEEe---
Confidence 4544433333344444556789999999999999999887766 22212233322111111110 011111
Q ss_pred cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhH
Q 045709 227 SWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
...........++..|+..+=.++++++.+.+....+.... ..| ..++-|.+..+.
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa---~tG-h~v~tTlHa~~~ 186 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA---LTG-HLVLSTLHTNDA 186 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH---HcC-CcEEEEeccCCH
Confidence 11111234556677788888899999998876544332221 234 445555555444
No 323
>PLN03073 ABC transporter F family; Provisional
Probab=96.92 E-value=0.0059 Score=61.29 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC-----cEEEEEEecC--ccCH----------------HHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-----DFVIWVVVSR--DLQL----------------EKIQESIAKK 220 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~~~--~~~~----------------~~~~~~i~~~ 220 (337)
...+++|+|.+|+|||||++.+........+.. ..+.|+.-.. ..+. ..-...++..
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~ 613 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 567999999999999999999987652111111 1122322110 0000 1122344555
Q ss_pred hCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 221 IGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 221 l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
++... ......+..+..+. +...+..++-+|+||+.-+..+.. .+...+... .+ .||++|++......+
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g--tvIivSHd~~~i~~~ 690 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG--GVLMVSHDEHLISGS 690 (718)
T ss_pred CCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC--EEEEEECCHHHHHHh
Confidence 55431 12234455554443 455667789999999987654322 122222211 23 688999988766543
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.92 E-value=0.0053 Score=54.16 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 158 RCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 158 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++...+..++.|.|.+|+|||||+..+.+..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444578999999999999999999999987
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.92 E-value=0.0068 Score=49.27 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=62.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEE---EEEecCccCHHHHHHHHHHHhCCCCc--cccCCC-------
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVI---WVVVSRDLQLEKIQESIAKKIGLFNE--SWKNKS------- 232 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~------- 232 (337)
.+.|-|++..|.||||.|..+.-+.. ...+ .++ |+-..........+..+.-.+..... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 46788898999999999999887772 2233 333 22222222333343332000000000 011111
Q ss_pred HHHHHHHHHHHhcCCcE-EEEEecCCCc-----cccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 233 MQEKAQEIFKILSKKKF-VLLLDDIWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 233 ~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
.....+..++.+...+| |||||++-.. -+.+.+...+.....+ ..||+|-|+..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~-~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH-QHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC-CEEEEECCCCC
Confidence 12233444555555555 9999998532 2233444434444445 79999999853
No 326
>PRK14527 adenylate kinase; Provisional
Probab=96.91 E-value=0.0016 Score=54.35 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|.|+|++|+||||+|+.+...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998776
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=96.91 E-value=0.0095 Score=58.54 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=69.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc-EEEEEEec----CccCHHHH-------------HHHHHHHhC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD-FVIWVVVS----RDLQLEKI-------------QESIAKKIG 222 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-~~~wv~~~----~~~~~~~~-------------~~~i~~~l~ 222 (337)
....+++|+|.+|+|||||++.++.......+. ++ .+.++.-. ...++.+. ..+++..++
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 356799999999999999999998765211111 11 11122110 11122221 233444444
Q ss_pred CCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 223 LFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
... ......+..+.++. +...|..++-+|+||+--+..+.. ++...+.. ..| ..||++|++...+..+
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g-~tviivsHD~~~~~~~ 520 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-ERE-ATALVVDHDIYMIDYI 520 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHh
Confidence 321 11234455554443 556777888999999876553322 21111211 124 6899999987765543
No 328
>PRK07667 uridine kinase; Provisional
Probab=96.91 E-value=0.0026 Score=53.18 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=28.9
Q ss_pred HHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.|...+.. ....+|+|.|.+|+||||+|..+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555543 345799999999999999999998877
No 329
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.035 Score=50.56 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCC-hhHHhhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 246 KKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTRE-FGVCGQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 246 ~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
++.-++|+|+++... ....+...+-.-..+ +.+|++|.+ ..+...+ +....+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPG-TVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcC-cEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 445588999998652 333333333222334 666665555 4444332 33467899999999999888765
No 330
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.0069 Score=52.26 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356899999999999999999998765
No 331
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.90 E-value=0.0057 Score=50.93 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC-------CCcEEEEEEecCc
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-------HFDFVIWVVVSRD 207 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~~~~ 207 (337)
...++.|.|.+|+||||++..+......... .-..++|++....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4568999999999999999999887732111 2236888877665
No 332
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.89 E-value=0.0012 Score=58.19 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 154 DRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 154 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
..+++.+... .+-+.++|++|+|||++++....... ...| ...-++.+...+...
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~ 77 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQ 77 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHH
Confidence 4455555554 45668999999999999999887651 2222 233455555444333
No 333
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0036 Score=50.98 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++.|.|++|+|||||++.++.+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 35688999999999999999998764
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.88 E-value=0.0021 Score=55.12 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC-CcEEEEEEecCccCHHHHHHHHHHHhCCCCc-------------ccc
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-FDFVIWVVVSRDLQLEKIQESIAKKIGLFNE-------------SWK 229 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~ 229 (337)
...++.|.|.+|+|||+|+.++..... .. -..++|++...+ ...+.+.+- .++.... ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 678999999999999999998765541 22 346778887654 344444433 3322100 001
Q ss_pred -----CCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 045709 230 -----NKSMQEKAQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 230 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
..+.......+.+.++. +...+|+|.+..
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 34677777777777654 557999998754
No 335
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.88 E-value=0.001 Score=56.98 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|+|++|+||||+|+.+...+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 336
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.85 E-value=0.0011 Score=56.09 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++..+|+|+|++|+|||||++.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998876
No 337
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.014 Score=49.45 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHH----HhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRC----LMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+...+.|.+- +......-|.+||.-|.|||+|++.+.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3578887777766543 333467789999999999999999999988
No 338
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.85 E-value=0.0052 Score=60.58 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+...+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467889999999999999999997765
No 339
>PRK06762 hypothetical protein; Provisional
Probab=96.85 E-value=0.0011 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+|+.+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 340
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.84 E-value=0.0032 Score=58.19 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcC--------------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEE--------------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.++.++.+.-.+.+. ..+.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899998888886665531 24678999999999999999999887
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0095 Score=54.51 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC-HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ-LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
+.+++.++|+.|+||||++..++.... ..-..+.+++...... ..+-+....+.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 468999999999999999999987762 2223566676654322 23344455555554321 23345555444433
Q ss_pred Hhc-CCcEEEEEecCCC
Q 045709 243 ILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 243 ~l~-~k~~LlVlDdv~~ 258 (337)
.-. +..=++++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3345777786643
No 342
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.84 E-value=0.0055 Score=51.22 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|.|.+|+|||||.+.+..-.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999997754
No 343
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0056 Score=56.58 Aligned_cols=126 Identities=22% Similarity=0.189 Sum_probs=66.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C------------cEEEEEEecC----ccCHH--------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F------------DFVIWVVVSR----DLQLE-------------- 211 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f------------~~~~wv~~~~----~~~~~-------------- 211 (337)
...+++|+|++|+|||||++.++.-.....+. | ..+.++.-.. ..++.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 56799999999999999999998754111110 0 1122332110 01111
Q ss_pred ----HHHHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCcE
Q 045709 212 ----KIQESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSNK 278 (337)
Q Consensus 212 ----~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s~ 278 (337)
.-..++++.++... ......+..+.++ .|...|..++-+|+||+--+..+.. .+...+.. ...| ..
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~t 186 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RT 186 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC-CE
Confidence 11233444444431 1113344444443 3556677788999999876543321 11111111 1125 68
Q ss_pred EEEeeCChhHHh
Q 045709 279 VVFTTREFGVCG 290 (337)
Q Consensus 279 IiiTtr~~~v~~ 290 (337)
||++|++.+.+.
T Consensus 187 vI~vTHd~~~~~ 198 (369)
T PRK11000 187 MIYVTHDQVEAM 198 (369)
T ss_pred EEEEeCCHHHHH
Confidence 889998876543
No 344
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.83 E-value=0.0093 Score=55.61 Aligned_cols=126 Identities=22% Similarity=0.267 Sum_probs=69.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC----------C-----C-cEEEEEEecC----ccCH------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----------H-----F-DFVIWVVVSR----DLQL------------ 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~-----f-~~~~wv~~~~----~~~~------------ 210 (337)
.+..+++|+|++|+|||||.+.+........+ . + ..+.++.-.. ..++
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~ 106 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR 106 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc
Confidence 35689999999999999999999765411010 0 0 0122221100 0011
Q ss_pred ----------HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccc------cccccCCCC
Q 045709 211 ----------EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVD------LDQVGLPIP 270 (337)
Q Consensus 211 ----------~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~ 270 (337)
.+....+++.++... ......+..+.++. |...|..++-+|+||+--+..+ +..+...+.
T Consensus 107 ~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~ 186 (402)
T PRK09536 107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186 (402)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 122334444444431 11234455444443 5567778889999998765433 222222222
Q ss_pred CCCCCCcEEEEeeCChhHHhh
Q 045709 271 SRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~ 291 (337)
. .+ ..||++|++.+.+..
T Consensus 187 ~--~g-~TIIivsHdl~~~~~ 204 (402)
T PRK09536 187 D--DG-KTAVAAIHDLDLAAR 204 (402)
T ss_pred h--cC-CEEEEEECCHHHHHH
Confidence 2 35 689999998776643
No 345
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.0099 Score=57.06 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=63.7
Q ss_pred HHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc----
Q 045709 154 DRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES---- 227 (337)
Q Consensus 154 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---- 227 (337)
..|-+.|.. .+..++.|.|.+|+|||||+.++..... .+-..++|++... +...+...+ +.++.....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 344444544 3678999999999999999999988772 3335567776554 445555443 444432211
Q ss_pred ---------ccCCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 045709 228 ---------WKNKSMQEKAQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 228 ---------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
....+.++....+.+.+.. +.-++|+|.+..
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1223446677777777754 566899999864
No 346
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.82 E-value=0.008 Score=58.11 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=44.9
Q ss_pred CccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc
Q 045709 144 PTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD 207 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 207 (337)
..++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+.+... ..-...+.+++..-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~---r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP---RADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---cCCCCeEEEEcccC
Confidence 5689999999888887754 3456788999999999999999988762 12223445555543
No 347
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.82 E-value=0.0022 Score=60.45 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 34899999999998887544 677899999999999999998876
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.82 E-value=0.007 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.....++|+|++|+||||||+.+..-.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHccc
Confidence 356799999999999999999986533
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.82 E-value=0.0012 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++.|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 350
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.81 E-value=0.012 Score=49.60 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc-EEEEEEecC---------------ccCHHHHHHHHHHHhCC-
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD-FVIWVVVSR---------------DLQLEKIQESIAKKIGL- 223 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-~~~wv~~~~---------------~~~~~~~~~~i~~~l~~- 223 (337)
.+..+++|.|.+|+|||||++.+........+. |+ .+.++.-.. ..+... .......++.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~-~~~~~~~~~l~ 107 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER-YEKVIKACALE 107 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH-HHHHHHHcCcH
Confidence 467899999999999999999998865211111 11 123332110 011111 1111211111
Q ss_pred -----C--------CccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccC-CCC-CCCCCCcEEEEeeC
Q 045709 224 -----F--------NESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGL-PIP-SRTSVSNKVVFTTR 284 (337)
Q Consensus 224 -----~--------~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~-~l~-~~~~g~s~IiiTtr 284 (337)
. .......+..+..+ .+...+..++-++++|+.-+..+- +.+.. .+. ....+ ..||++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~-~tvi~~sh 186 (204)
T cd03250 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN-KTRILVTH 186 (204)
T ss_pred HHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC-CEEEEEeC
Confidence 0 00112334433333 366677788999999997654332 22221 111 11235 78888888
Q ss_pred ChhHHhhccCCceeec
Q 045709 285 EFGVCGQMEAHRSFKV 300 (337)
Q Consensus 285 ~~~v~~~~~~~~~~~l 300 (337)
+...... ++.++.+
T Consensus 187 ~~~~~~~--~d~i~~l 200 (204)
T cd03250 187 QLQLLPH--ADQIVVL 200 (204)
T ss_pred CHHHHhh--CCEEEEE
Confidence 8776653 4445444
No 351
>PTZ00301 uridine kinase; Provisional
Probab=96.81 E-value=0.0013 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999988765
No 352
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.81 E-value=0.0012 Score=54.65 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|.|+|++|+||||+++.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 353
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.011 Score=55.12 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++++|++|+||||++..+...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887754
No 354
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.80 E-value=0.0082 Score=58.13 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=67.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C---------------cEEEEEEecC----ccCH-----------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F---------------DFVIWVVVSR----DLQL----------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f---------------~~~~wv~~~~----~~~~----------- 210 (337)
....+++|+|++|+|||||++.++.......+. + ..+.|+.-.. ..++
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 114 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR 114 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc
Confidence 356799999999999999999997754111110 0 0122332111 0111
Q ss_pred ---HHHHHHHHHHhCCCCc---cccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc------ccccCCCCCCCCCCc
Q 045709 211 ---EKIQESIAKKIGLFNE---SWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL------DQVGLPIPSRTSVSN 277 (337)
Q Consensus 211 ---~~~~~~i~~~l~~~~~---~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~g~s 277 (337)
.+-...++..++.... .....+..+..+ .|...|..++-+|+||+.-+..+. ..+...+. ..| .
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g-~ 191 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL--AQG-V 191 (510)
T ss_pred hHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HCC-C
Confidence 1223345555555321 112344444433 355666778889999997665332 12211121 235 6
Q ss_pred EEEEeeCChhHHh
Q 045709 278 KVVFTTREFGVCG 290 (337)
Q Consensus 278 ~IiiTtr~~~v~~ 290 (337)
.||++|++.+...
T Consensus 192 tiiivtHd~~~~~ 204 (510)
T PRK15439 192 GIVFISHKLPEIR 204 (510)
T ss_pred EEEEEeCCHHHHH
Confidence 8999999876543
No 355
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.01 Score=54.97 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=47.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCC-CCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
...++.++|++|+||||.+..++..+.... .+-..+..+++.... ....-+...++.++.+.. ...+.......+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999988762111 122345555554321 122224444454544321 2223333333333
Q ss_pred HHhcCCcEEEEEecCC
Q 045709 242 KILSKKKFVLLLDDIW 257 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~ 257 (337)
.. .+.-++++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 22 233466666653
No 356
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.79 E-value=0.0007 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
..+++|+|++|.|||||.+.+..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 47999999999999999999984
No 357
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.79 E-value=0.0076 Score=60.08 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+....|+|+|.+|+|||||++.+..-+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997655
No 358
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.79 E-value=0.0062 Score=55.18 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.+.|++|+||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999877
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=96.79 E-value=0.013 Score=50.34 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=74.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---------cCCCH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---------KNKSM 233 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~~~ 233 (337)
.+..++.|.|.+|+|||+|+.++..... ..-..++|++.... ..++...+. +++...... ...+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~ 135 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICA 135 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCH
Confidence 3567999999999999999999877662 22345677766543 444444433 223221110 11223
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCCcc------ccccccCCCC--CCCCCCcEEEEeeCChhHHhh-ccCCcee-ecCCC
Q 045709 234 QEKAQEIFKILSKKKFVLLLDDIWELV------DLDQVGLPIP--SRTSVSNKVVFTTREFGVCGQ-MEAHRSF-KVECL 303 (337)
Q Consensus 234 ~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~l~~~l~--~~~~g~s~IiiTtr~~~v~~~-~~~~~~~-~l~~L 303 (337)
+.....+.. ..+.-++|+|.+.... ....+...+. ....| ..||+|+....-... .+..... .| .+
T Consensus 136 ~~ii~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~g-itvIl~sQl~r~~e~~~~~~P~laDl-R~ 211 (237)
T PRK05973 136 DYIIARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERG-LIIVFISQIDRSFDPSAKPLPDIRDV-RL 211 (237)
T ss_pred HHHHHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCC-CeEEEEecCccccccCCCCCCChhhc-CC
Confidence 333333333 1234599999875331 1111100010 12345 788888764332211 1111111 11 11
Q ss_pred CHHHHHHHHhHhhCCCC
Q 045709 304 RYDDAWKLFEQKVGADT 320 (337)
Q Consensus 304 ~~~ea~~Lf~~~~~~~~ 320 (337)
+..--..||.+++|-.+
T Consensus 212 ~~~~d~~~f~~~~~~~~ 228 (237)
T PRK05973 212 PNPLDLSLFDKACFLNN 228 (237)
T ss_pred CChhhHHHhhhhheecC
Confidence 22333578998887554
No 360
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0076 Score=58.66 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc---EEEEEEecC------ccCHHH-------------HHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSR------DLQLEK-------------IQESIAK 219 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~------~~~~~~-------------~~~~i~~ 219 (337)
...+++|+|++|+|||||++.++.......+. |+ .+.|+.-.. ..++.+ ....++.
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 56799999999999999999998754111111 11 123332111 012221 1233444
Q ss_pred HhCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCChhHHhh
Q 045709 220 KIGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 220 ~l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~~v~~~ 291 (337)
.++... ......+..+..+. +...+..++-+|+||+.-+..+.. .+...+... + ..||++|++......
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vsHd~~~~~~ 500 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--E-GTLIFVSHDREFVSS 500 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--C-CEEEEEeCCHHHHHH
Confidence 444421 11233444444333 556667788899999886653321 111112211 3 378999998876654
Q ss_pred c
Q 045709 292 M 292 (337)
Q Consensus 292 ~ 292 (337)
+
T Consensus 501 ~ 501 (530)
T PRK15064 501 L 501 (530)
T ss_pred h
Confidence 4
No 361
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.78 E-value=0.01 Score=58.02 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||.+.++...
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998865
No 362
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.78 E-value=0.0033 Score=58.58 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=53.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc----ccCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNES----WKNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (337)
.....++|+|.+|+|||||++.+.+.. ..+.++.+-+.... .+.++...++..-+..... ..+.+...
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 356789999999999999999997644 22455556565443 3455555554432221100 01111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112233444 58999999999853
No 363
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.78 E-value=0.0056 Score=59.54 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++...++|+|++|+|||||++.+..-+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997765
No 364
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.0043 Score=48.73 Aligned_cols=41 Identities=34% Similarity=0.360 Sum_probs=30.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHH
Q 045709 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 214 (337)
|.|+|.+|+|||+||+.+++.. ... ..-+.++...+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~---~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRP---VIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCE---EEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcc---eEEEEeccccccccce
Confidence 6799999999999999999887 222 3335677766666654
No 365
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.014 Score=54.14 Aligned_cols=126 Identities=18% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C------------cEEEEEEecC----ccCH---------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F------------DFVIWVVVSR----DLQL--------------- 210 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f------------~~~~wv~~~~----~~~~--------------- 210 (337)
...+++|+|++|+|||||.+.++.-.....+. + ..+.++.-.. ..++
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 56799999999999999999998654110000 0 0122221100 0011
Q ss_pred ---HHHHHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc-------ccccCCCCCCCCCC
Q 045709 211 ---EKIQESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL-------DQVGLPIPSRTSVS 276 (337)
Q Consensus 211 ---~~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~l~~~~~g~ 276 (337)
.+-...+++.++... ......+..+.++ .|.+.|..++=+|+||+--+..+. ..+..... ..|
T Consensus 124 ~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--~~g- 200 (377)
T PRK11607 124 AEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE--RVG- 200 (377)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcC-
Confidence 112234444444431 1113344444433 356677788899999987654331 11211111 135
Q ss_pred cEEEEeeCChhHHhhc
Q 045709 277 NKVVFTTREFGVCGQM 292 (337)
Q Consensus 277 s~IiiTtr~~~v~~~~ 292 (337)
..+|++|++...+..+
T Consensus 201 ~tii~vTHd~~ea~~l 216 (377)
T PRK11607 201 VTCVMVTHDQEEAMTM 216 (377)
T ss_pred CEEEEEcCCHHHHHHh
Confidence 6888899987765443
No 366
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.77 E-value=0.013 Score=53.97 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 30 AGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999998754
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.76 E-value=0.0089 Score=56.70 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++++|++|+||||++.+++..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 368
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.75 E-value=0.0064 Score=56.94 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHH----
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQE---- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~---- 235 (337)
.....++|+|.+|+|||||++.+.... .....+++.......++.++....+.......-.+ .+.+...
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 356789999999999999998886544 22334555544344455554444433321000000 1111111
Q ss_pred --HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 --KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 --~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 112233333 48899999999853
No 369
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.75 E-value=0.0014 Score=55.91 Aligned_cols=121 Identities=13% Similarity=0.053 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc-cCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW-KNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 242 (337)
...++.|.|++|.||||+.+.+...... .+-.+..|..-.. -..+.+|...++...... ...+...-...+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~l--a~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIM--AQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH--HhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 4578899999999999999998762211 1111112211000 000111111111111000 11122223333444
Q ss_pred Hhc--CCcEEEEEecCCCccc-------cccccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 243 ILS--KKKFVLLLDDIWELVD-------LDQVGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 243 ~l~--~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
.++ +++-|++||++-...+ ...+...+... .+ +.+|++|+..+++...
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~-~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KK-CLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cC-CeEEEEcccHHHHHHH
Confidence 442 5789999999754322 11122222222 35 8999999998886543
No 370
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.74 E-value=0.015 Score=50.39 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=74.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCC---------CCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCC-----------
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTP---------NHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFN----------- 225 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~----------- 225 (337)
+..|+|++|+|||+|+..++....... ..-..+++++...+. .+..-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567899999999999999987652111 112246666665543 23334444444442110
Q ss_pred -ccc--cC---CCHHHHHHHHHHHh-cCCcEEEEEecCCC--------ccccccccCCCCC--CCCCCcEEEEeeCChhH
Q 045709 226 -ESW--KN---KSMQEKAQEIFKIL-SKKKFVLLLDDIWE--------LVDLDQVGLPIPS--RTSVSNKVVFTTREFGV 288 (337)
Q Consensus 226 -~~~--~~---~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--------~~~~~~l~~~l~~--~~~g~s~IiiTtr~~~v 288 (337)
... .. .........+.+.+ ..+.-+||+|-+-. ......+...+.. ...+ +.||++++...-
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g-~avl~v~H~~K~ 161 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTG-AAILLVHHVRKG 161 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC-CEEEEEeccCcc
Confidence 000 00 01222333344333 45677999996532 1112222111111 1235 788888875422
Q ss_pred Hh--------h-----c--cCCceeecCCCCHHHHHH
Q 045709 289 CG--------Q-----M--EAHRSFKVECLRYDDAWK 310 (337)
Q Consensus 289 ~~--------~-----~--~~~~~~~l~~L~~~ea~~ 310 (337)
.. . + .....+.+.+++++++.+
T Consensus 162 ~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 162 SAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred cccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 11 0 0 123477889999999887
No 371
>PRK03839 putative kinase; Provisional
Probab=96.74 E-value=0.0014 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 372
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.017 Score=52.25 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=38.7
Q ss_pred CCcEEEEEecCCCccc--cccccCCCCCCCCCCcEEEEeeCChh-HHhhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 246 KKKFVLLLDDIWELVD--LDQVGLPIPSRTSVSNKVVFTTREFG-VCGQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 246 ~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
+++-++|+|+++.... -..+...+.....+ +.+|++|++.. +...+ +....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~-~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQ-VVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCC-CEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344556687765421 12221112111234 56777777654 33332 22357899999999998888654
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.73 E-value=0.0017 Score=54.75 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC-CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccC-CCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKN-KSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~ 241 (337)
...++.|.|++|.||||+.+.+....... -+.| +.+.. .. -.+...|...++........ .....-...+.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 45889999999999999999886433100 1111 11111 01 12223333333322110011 11111111222
Q ss_pred HHh--cCCcEEEEEecCCCcccc-------ccccCCCCCCCCCCcEEEEeeCChhHHhhcc
Q 045709 242 KIL--SKKKFVLLLDDIWELVDL-------DQVGLPIPSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 242 ~~l--~~k~~LlVlDdv~~~~~~-------~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
..+ ..++-|+++|+.....+. ..+...+.. .+ +.+|++|+..+++..+.
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~-~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KE-STVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cC-CEEEEECChHHHHHHhh
Confidence 222 356789999998543221 112222222 25 89999999998877654
No 374
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0089 Score=54.93 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc------------EEEEEEecC----ccCH---------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD------------FVIWVVVSR----DLQL--------------- 210 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~------------~~~wv~~~~----~~~~--------------- 210 (337)
...+++|+|++|+|||||.+.++.-.....+. |+ .+.++.-.. ..++
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 56789999999999999999997754111110 00 122221100 0011
Q ss_pred ---HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc---ccccCCCC--CCCCCCcE
Q 045709 211 ---EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL---DQVGLPIP--SRTSVSNK 278 (337)
Q Consensus 211 ---~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~--~~~~g~s~ 278 (337)
..-..++++.++... ......+..+.++. |.+.|..++-+|+||+.-+..+. ..+...+. ....| ..
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~t 187 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK-TT 187 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CE
Confidence 112234444444421 11133444444433 56677788999999997654331 11111111 11225 78
Q ss_pred EEEeeCChhHHhh
Q 045709 279 VVFTTREFGVCGQ 291 (337)
Q Consensus 279 IiiTtr~~~v~~~ 291 (337)
+|++|++...+..
T Consensus 188 ii~vTHd~~ea~~ 200 (356)
T PRK11650 188 SLYVTHDQVEAMT 200 (356)
T ss_pred EEEEeCCHHHHHH
Confidence 9999998765443
No 375
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.72 E-value=0.011 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.++...
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356899999999999999999997754
No 376
>PRK05922 type III secretion system ATPase; Validated
Probab=96.72 E-value=0.0054 Score=57.28 Aligned_cols=91 Identities=12% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-ccCHHHHHHHHHHHhCCCCccc----cCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQESIAKKIGLFNESW----KNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~-- 235 (337)
.+...++|+|.+|+|||||++.+.+.. ..+...++.++. .....+.+.+............ .+.+...
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 456789999999999999999998754 123333333322 3334455555544332221100 1111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233444 58999999999854
No 377
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.72 E-value=0.0092 Score=59.36 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc---EEEEEEecC-----ccCHHHH----------------HHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSR-----DLQLEKI----------------QESI 217 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~-----~~~~~~~----------------~~~i 217 (337)
...+++|+|.+|+|||||.+.++.......+. +. .+.|+.-.. ..++.+. ...+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 423 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY 423 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence 56789999999999999999998765211111 11 123332111 0122111 1222
Q ss_pred HHHhCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 218 AKKIGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 218 ~~~l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
+..++... ......+..+..+. |...+..++-+|+||+.-+..+. +.+...+... + ..||++|++....
T Consensus 424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vSHd~~~~ 500 (635)
T PRK11147 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--Q-GTVLLVSHDRQFV 500 (635)
T ss_pred HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHHHH
Confidence 33333321 11133444444433 45566678899999988765432 2222222221 3 4789999987765
Q ss_pred hhc
Q 045709 290 GQM 292 (337)
Q Consensus 290 ~~~ 292 (337)
..+
T Consensus 501 ~~~ 503 (635)
T PRK11147 501 DNT 503 (635)
T ss_pred HHh
Confidence 443
No 378
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.72 E-value=0.01 Score=49.05 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=63.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC---ccCHHHHHHHHH--HH--hCCCCccccCCCH---
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR---DLQLEKIQESIA--KK--IGLFNESWKNKSM--- 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~~--- 233 (337)
+...|-|+|.+|-||||.|.-+.-+.. .+-..+..+..-. .......+..+- .. .+.. -.+...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 457899999999999999998887762 3323333333222 223333333210 00 0110 00111111
Q ss_pred ----HHHHHHHHHHhcCCcE-EEEEecCCCc-----cccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 234 ----QEKAQEIFKILSKKKF-VLLLDDIWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 234 ----~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
.......++.+....| |||||++-.. -+.+++...+.....+ ..||+|-|+..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~-~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM-QHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 1233444555555554 9999998543 2334444444444445 79999999853
No 379
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.71 E-value=0.0036 Score=48.66 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 151 LTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 151 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++..++-..|.. ....++.+.|.-|+|||||++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344445444443 356799999999999999999999987
No 380
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0019 Score=53.34 Aligned_cols=135 Identities=15% Similarity=0.255 Sum_probs=64.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH--HHhCCCCccccCCCHHHHHHHHHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA--KKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
+.|.+.|.+|+||||+|+++...+. ..-..++ +++.+ -..-++ +.++...+.....-.+.....|-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~---~~i~~vi--~l~kd-----y~~~i~~DEslpi~ke~yres~~ks~~rlldSa 71 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR---QEIWRVI--HLEKD-----YLRGILWDESLPILKEVYRESFLKSVERLLDSA 71 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH---Hhhhhcc--ccchh-----hhhheecccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988773 1111111 01110 000000 0000000000000011122233334
Q ss_pred hcCCcEEEEEecCCCcccccc-ccCCCCCCCCCCcEEEEeeCChhHHhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 244 LSKKKFVLLLDDIWELVDLDQ-VGLPIPSRTSVSNKVVFTTREFGVCGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~~~~~~-l~~~l~~~~~g~s~IiiTtr~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
+ +.+++|.||..-...+.. +...-...... -.||-+--..+++...+. -+-+|..++--.+|..+.-
T Consensus 72 l--kn~~VIvDdtNYyksmRrqL~ceak~~~tt-~ciIyl~~plDtc~rrN~---ergepip~Evl~qly~RfE 139 (261)
T COG4088 72 L--KNYLVIVDDTNYYKSMRRQLACEAKERKTT-WCIIYLRTPLDTCLRRNR---ERGEPIPEEVLRQLYDRFE 139 (261)
T ss_pred h--cceEEEEecccHHHHHHHHHHHHHHhcCCc-eEEEEEccCHHHHHHhhc---cCCCCCCHHHHHHHHHhhc
Confidence 4 389999999865432211 10001111223 467777766777765542 2345666666666665543
No 381
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.70 E-value=0.012 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.638 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998877
No 382
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.70 E-value=0.0022 Score=51.31 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=27.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV 203 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 203 (337)
..+|-|.|.+|+||||||+.+...+. ..-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 46899999999999999999999883 3334455554
No 383
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.70 E-value=0.0013 Score=53.80 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=32.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCC-CCCcEEEEEEecCccC
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSRDLQ 209 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~~ 209 (337)
..++.+.|+.|+|||.||+.+...+ . +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 5678899999999999999999988 3 4555666666665433
No 384
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.70 E-value=0.0099 Score=58.44 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++...++|+|.+|+|||||++.+...+
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 385
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.009 Score=54.79 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||.+.+..-.
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 356799999999999999999997754
No 386
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.69 E-value=0.0044 Score=51.13 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 387
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.69 E-value=0.0039 Score=61.31 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=54.8
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
..++|.++.++.|...+... +.+.++|.+|+||||+|+.+..... ...++..+|..-+ ..+...+++.+...++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 45889999888888877654 4788999999999999999988762 3446777886653 3355666666665544
No 388
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.075 Score=51.97 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHhcC-------------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 146 VVGLQLTFDRVWRCLMEE-------------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~~-------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
+-|..+..+-+.+.+.-+ ...-|.++|++|+|||.||..+.... . .-++++..+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----H
Confidence 445555555555555321 23458899999999999999998766 2 224555543 2
Q ss_pred HHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCCC--CCCCCCc
Q 045709 213 IQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPIP--SRTSVSN 277 (337)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~g~s 277 (337)
++.+. +| .+.+.....+.+.-.-++|+|.+|++++... ..++...+. .+-.| -
T Consensus 737 lL~Ky---IG--------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G-V 804 (952)
T KOG0735|consen 737 LLSKY---IG--------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG-V 804 (952)
T ss_pred HHHHH---hc--------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce-E
Confidence 22221 22 1222333333344456999999999986411 223322221 12334 4
Q ss_pred EEEE-eeCChhHHhh-ccC---CceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 278 KVVF-TTREFGVCGQ-MEA---HRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 278 ~Iii-Ttr~~~v~~~-~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
-|+- |||..-+-.. +.+ ++.+..+.-++.+-.++|+...-.-....+.+++.+|.
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~ 864 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQ 864 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhh
Confidence 4443 5564333211 122 34455566677777788876654333334556666654
No 389
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.68 E-value=0.0059 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|.|+|.||+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999887
No 390
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.011 Score=55.58 Aligned_cols=87 Identities=26% Similarity=0.277 Sum_probs=46.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC-HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ-LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
.+++.++|++|+||||++..++..+ ........+..++...... ...-+......++.+.. ...+..+....+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4699999999999999999988776 2012234566666544211 11223333333443321 12233334333333
Q ss_pred hcCCcEEEEEecC
Q 045709 244 LSKKKFVLLLDDI 256 (337)
Q Consensus 244 l~~k~~LlVlDdv 256 (337)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 22 2346777755
No 391
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.68 E-value=0.012 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||.+.+....
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 56799999999999999999997643
No 392
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.67 E-value=0.0035 Score=60.75 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=38.7
Q ss_pred ccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++|.+..+..+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999888776666677899999999999999998754
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.67 E-value=0.0048 Score=58.07 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=26.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF 196 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f 196 (337)
..+-.+|+|.+|+||||+.+.++.+......++
T Consensus 100 ~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 100 RGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred CCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 567899999999999999999998764333333
No 394
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.66 E-value=0.0072 Score=55.96 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=38.5
Q ss_pred CCccccchhhHHHHHHHHhcC--------------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLMEE--------------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.++.+..+..++.+. ..+.+.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999998888777431 14678999999999999999998877
No 395
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.66 E-value=0.015 Score=57.04 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc---EEEEEEecC-----ccCHHH----------------HHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSR-----DLQLEK----------------IQES 216 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~-----~~~~~~----------------~~~~ 216 (337)
....+++|+|.+|+|||||++.++.......+. +. .+.|+.-.. ..++.+ ....
T Consensus 348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 427 (556)
T PRK11819 348 PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA 427 (556)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH
Confidence 356789999999999999999998754111111 11 123332111 011111 1123
Q ss_pred HHHHhCCCC----ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhH
Q 045709 217 IAKKIGLFN----ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 217 i~~~l~~~~----~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
++..++... ......+..+..+ .+...+..++-+|+||+.-+..+. ..+...+... .+ .||++|++...
T Consensus 428 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~--tvi~vtHd~~~ 504 (556)
T PRK11819 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-PG--CAVVISHDRWF 504 (556)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC--eEEEEECCHHH
Confidence 445555431 1123445544444 355666788999999987655331 1111112211 24 58889998776
Q ss_pred HhhccCCceeec
Q 045709 289 CGQMEAHRSFKV 300 (337)
Q Consensus 289 ~~~~~~~~~~~l 300 (337)
...+ ++.++.+
T Consensus 505 ~~~~-~d~i~~l 515 (556)
T PRK11819 505 LDRI-ATHILAF 515 (556)
T ss_pred HHHh-CCEEEEE
Confidence 5543 2344444
No 396
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.66 E-value=0.0095 Score=54.70 Aligned_cols=128 Identities=22% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CCc------------EEEEEEecC----ccC----------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HFD------------FVIWVVVSR----DLQ---------------- 209 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f~------------~~~wv~~~~----~~~---------------- 209 (337)
...+++|+|++|+|||||.+.++.-.....+ .++ .+.++.-.. ..+
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 5679999999999999999999875421111 010 111221000 001
Q ss_pred --HHHHHHHHHHHhCCCC---ccccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCcccc---ccccCCCCC--CCCCCcE
Q 045709 210 --LEKIQESIAKKIGLFN---ESWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDL---DQVGLPIPS--RTSVSNK 278 (337)
Q Consensus 210 --~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~--~~~g~s~ 278 (337)
...-..++++.+++.. ......+..+.++ .|.+.|..++=+|+||+.-+..+. ..+...+.. ...+ ..
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~t 187 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-VT 187 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CE
Confidence 1122344555555432 1123344444433 356677778889999987654331 111111111 1124 68
Q ss_pred EEEeeCChhHHhhc
Q 045709 279 VVFTTREFGVCGQM 292 (337)
Q Consensus 279 IiiTtr~~~v~~~~ 292 (337)
+|++|++...+..+
T Consensus 188 vi~vTHd~~ea~~l 201 (353)
T TIGR03265 188 TIMVTHDQEEALSM 201 (353)
T ss_pred EEEEcCCHHHHHHh
Confidence 88888887765433
No 397
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.66 E-value=0.0052 Score=52.89 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHH
Q 045709 153 FDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 153 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 213 (337)
...++..+.. .+..+|+|.|+||+|||||...+...+ ...++--.++-|+-|.+++=-.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 3445555543 467899999999999999999998888 33333335555555555544333
No 398
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.65 E-value=0.002 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.|+|++|+||||+|+.+....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999887
No 399
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.65 E-value=0.011 Score=59.47 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++...++|+|.+|+|||||++.+..-+
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997765
No 400
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0039 Score=51.95 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..|.++.|++|+|||||.+.+-.-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 467899999999999999999985433
No 401
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.64 E-value=0.0086 Score=56.18 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=53.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc----ccCCCHHH---
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES----WKNKSMQE--- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 235 (337)
.+...++|.|.+|+|||||++.+.... . .-..+++..-.+...+.++.+.+...-+..... ..+.+...
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 467899999999999999999998765 1 112444444444445555555555432221100 01111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ---KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ---~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 48899999999853
No 402
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.63 E-value=0.017 Score=58.26 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|++|+|||||++.+..-+
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999998766
No 403
>PRK00625 shikimate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 404
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.63 E-value=0.008 Score=59.14 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=48.8
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
+.++|.++.+..+...+... ..+.++|++|+||||+++.+.+... ...|...+++.-+. .+...++..++..++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhhc
Confidence 56789998888887777654 3566999999999999999998872 23344444443222 233444555554443
No 405
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.63 E-value=0.0059 Score=53.60 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=59.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCC-----------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFN----------------- 225 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------- 225 (337)
+..+++.|+|.+|+|||+++.++.... ......++|++.... ...+...+.+ ++...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 467899999999999999999998887 345788999988764 3444444432 22110
Q ss_pred -cc-----c-cCCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 045709 226 -ES-----W-KNKSMQEKAQEIFKILSK-KKFVLLLDDIW 257 (337)
Q Consensus 226 -~~-----~-~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 257 (337)
.. . ...+...+...+...... +...+|+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 0 023455566666665543 37789999986
No 406
>PRK04040 adenylate kinase; Provisional
Probab=96.63 E-value=0.0021 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|+|++|+||||+++.+...+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998887
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.011 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 408
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.62 E-value=0.0052 Score=61.65 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 589999888888766643 345578899999999999999998765
No 409
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.62 E-value=0.0082 Score=48.99 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++..|+|-+|+|||||...++-..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 67899999999999999999886544
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.61 E-value=0.0085 Score=48.52 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=59.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCC----------CCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTP----------NHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQE 235 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 235 (337)
++..|+|++|.|||++.+.+.--..... ..+....| .+.- +....+.+ ....
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~----------i~~~~~lS-------~G~~ 83 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV-SAEL----------IFTRLQLS-------GGEK 83 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceee-EEEE----------ehheeecc-------ccHH
Confidence 6899999999999999998643331111 11111111 1100 11111111 1122
Q ss_pred HHHHHHHHhc----CCcEEEEEecCCCcccccc---ccCCCCC-CCCCCcEEEEeeCChhHHhhccCCceeecCC
Q 045709 236 KAQEIFKILS----KKKFVLLLDDIWELVDLDQ---VGLPIPS-RTSVSNKVVFTTREFGVCGQMEAHRSFKVEC 302 (337)
Q Consensus 236 ~~~~l~~~l~----~k~~LlVlDdv~~~~~~~~---l~~~l~~-~~~g~s~IiiTtr~~~v~~~~~~~~~~~l~~ 302 (337)
....+...+. +++-++++|+.....+... +...+.. ...+ +.+|++|.+.++.... ...+.+.+
T Consensus 84 ~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~-~~vii~TH~~~~~~~~--d~~~~l~~ 155 (162)
T cd03227 84 ELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKG-AQVIVITHLPELAELA--DKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHhh--hhEEEEEE
Confidence 2223334442 3678999999876544221 1111111 1125 7999999998887653 44555543
No 411
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.60 E-value=0.0038 Score=49.20 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=28.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5799999999999999999999983 34555555666554
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.60 E-value=0.00098 Score=56.99 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc-CCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccC-CCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD-TPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKN-KSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~ 241 (337)
+..++.|.|++|.||||+.+.+.--..- ..+ ++|.+... ...+...++..++........ .........+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g-----~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG-----CFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC-----CCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 5679999999999999999887542100 011 12211110 001122223333322111111 12222223333
Q ss_pred HHh--cCCcEEEEEecCC---Ccccccc----ccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 242 KIL--SKKKFVLLLDDIW---ELVDLDQ----VGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 242 ~~l--~~k~~LlVlDdv~---~~~~~~~----l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
..+ ...+-|++||+.- +..+-.. +...+.. ..+ +.+|+||+..++...+
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~-~~vlisTH~~el~~~~ 159 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIK-CFCLFATHFHELTALA 159 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCC-CeEEEEechHHHHHHh
Confidence 334 3578899999993 3222111 1111221 235 7899999987665433
No 413
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.60 E-value=0.0084 Score=55.85 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCccccchhhHHHHHHHHh-------c---C--------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 143 PPTVVGLQLTFDRVWRCLM-------E---E--------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.++.++.+...+. . . ....+.++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4567999988888865551 1 1 12579999999999999999998766
No 414
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.59 E-value=0.038 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
..+.+|+|.+|.|||||...++.
T Consensus 21 ~gl~~i~G~NGsGKStll~ai~~ 43 (198)
T cd03276 21 PRVNFIVGNNGSGKSAILTALTI 43 (198)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45778999999999999988874
No 415
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.59 E-value=0.0099 Score=58.39 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+...+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 367899999999999999999997765
No 416
>PLN03073 ABC transporter F family; Provisional
Probab=96.59 E-value=0.012 Score=59.02 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....++|+|.+|+|||||.+.+...
T Consensus 202 ~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 202 FGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5678999999999999999999764
No 417
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.59 E-value=0.0039 Score=51.56 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=30.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV 203 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 203 (337)
.+++.|+|++|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 5789999999999999999999988 67786555544
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.59 E-value=0.021 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=23.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998887
No 419
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.59 E-value=0.0048 Score=52.07 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=28.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 209 (337)
.|+|+|-||+||||+|..++..+.. ++.|+ +.-|+...+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCce-EEEEeCCCCCC
Confidence 5899999999999999997777632 22233 44455555443
No 420
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.58 E-value=0.012 Score=54.52 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||.+.++.-.
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356799999999999999999998754
No 421
>PRK15453 phosphoribulokinase; Provisional
Probab=96.58 E-value=0.017 Score=50.65 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=45.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc--CHHHHHHHHH--HHhCCCCcc--ccCCCHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL--QLEKIQESIA--KKIGLFNES--WKNKSMQEK 236 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~--~~l~~~~~~--~~~~~~~~~ 236 (337)
.+..+|+|.|.+|+||||+++.+...+. ..-.....++...-. +....-..+. ..-+..-+. ....+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 4568999999999999999999987662 111123444443322 2222222221 112211111 255566777
Q ss_pred HHHHHHHhcC
Q 045709 237 AQEIFKILSK 246 (337)
Q Consensus 237 ~~~l~~~l~~ 246 (337)
.+.++.+..+
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 7777766553
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.58 E-value=0.0032 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQIN 186 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~ 186 (337)
.+++.|.|++|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3689999999999999999987
No 423
>PRK06851 hypothetical protein; Provisional
Probab=96.57 E-value=0.035 Score=50.88 Aligned_cols=46 Identities=24% Similarity=0.193 Sum_probs=34.9
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC
Q 045709 162 EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (337)
Q Consensus 162 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 209 (337)
.+-.+++.|.|.+|+|||||++.++.... ...++..++-|.+.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dPds 256 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDPDS 256 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCCC
Confidence 34468899999999999999999999883 45566666666555433
No 424
>PRK04132 replication factor C small subunit; Provisional
Probab=96.57 E-value=0.036 Score=56.16 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=74.4
Q ss_pred cCCCcHHHHHHHHHHhhccCCCCC-cEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEE
Q 045709 173 MGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVL 251 (337)
Q Consensus 173 ~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 251 (337)
+.++||||+|..++++.. ...+ ..++-++++.......+ ++++..+....+ . -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVI-REKVKEFARTKP--I--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--c--------------CCCCCEEE
Confidence 778999999999999873 1222 24666777765444433 333333211100 0 01245799
Q ss_pred EEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 252 LLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 252 VlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
|||+++... ....++..+-.-... +++|++|.+. .+...+ +....+.+.+++.++-...+...+-
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~-~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCC-eEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 999998763 344444333322234 6777766653 333222 2346889999999999888877654
No 425
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.07 Score=48.56 Aligned_cols=155 Identities=9% Similarity=0.022 Sum_probs=80.3
Q ss_pred hhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC-----
Q 045709 151 LTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF----- 224 (337)
Q Consensus 151 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~----- 224 (337)
..-+++.+.+..++ ..-+.+.|+.|+||+++|..++....-. ...... .+ ......+.+.......
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~~---~C----g~C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGHK---SC----GHCRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CC----CCCHHHHHHHcCCCCCEEEEe
Confidence 34566777776654 5678899999999999999988766210 110000 00 1111111111100000
Q ss_pred Cccc-cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhc-cC
Q 045709 225 NESW-KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQM-EA 294 (337)
Q Consensus 225 ~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~-~~ 294 (337)
.+.. .....++ ++.+.+.+ .+++-++|+|+++... .-..+...+-.-..+ +.+|++|.+. .+...+ +.
T Consensus 81 p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 PEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEN-TWFFLACREPARLLATLRSR 158 (334)
T ss_pred cccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhc
Confidence 0000 0112222 23333333 2556699999998653 222232222221234 6777776654 344332 33
Q ss_pred CceeecCCCCHHHHHHHHhHh
Q 045709 295 HRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
...+.+.+++.+++.+.+...
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred cccccCCCCCHHHHHHHHHHc
Confidence 457899999999998888654
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0039 Score=54.54 Aligned_cols=60 Identities=25% Similarity=0.351 Sum_probs=42.7
Q ss_pred HHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHH
Q 045709 154 DRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 154 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 214 (337)
.+|+..+.. ++..+|+|.|.||+|||||.-.+...+ ...++--.++=|+-|++++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 345555543 467899999999999999999999888 444554456666666666554444
No 427
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.53 E-value=0.018 Score=56.43 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||.+.++...
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999998765
No 428
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.52 E-value=0.007 Score=56.46 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=51.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc----cCCCHHH---
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW----KNKSMQE--- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~--- 235 (337)
.+...++|+|.+|+|||||++.+.... .....++.....+...+.++....+..-+...... .+.+...
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 356789999999999999998887654 22223333333334445555555444332211000 1111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ---KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ---~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112234444 57899999999854
No 429
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.038 Score=53.51 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=84.7
Q ss_pred CccccchhhHHH---HHHHHhcCC---------CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDR---VWRCLMEEH---------AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~---l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.++-|.++..++ +++.|.++. ++-+.++|++|.|||.||+.+.... .-+|- +.|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf-----~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFF-----SISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCce-----eccch----
Confidence 456787765554 555565431 4568899999999999999998877 22331 22221
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc----------------ccccccCCCCCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV----------------DLDQVGLPIPSRTSV 275 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~~~~g 275 (337)
++++.+ -.-......+...+..+.-+|++++|.++... .+.++..-. ++..+
T Consensus 218 ----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm-DGF~~ 285 (596)
T COG0465 218 ----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM-DGFGG 285 (596)
T ss_pred ----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh-ccCCC
Confidence 111111 11111222333444555668999999887431 122332211 11111
Q ss_pred C-cEEEE-eeCChhHHhh--cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 276 S-NKVVF-TTREFGVCGQ--ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 276 ~-s~Iii-Ttr~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
+ .-|++ .|...+|... +. -+..+.++.-+-..-.+.++-++........-++..|++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr 349 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIAR 349 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhh
Confidence 0 23333 3333444311 11 235566666666777777776664433333444555544
No 430
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.52 E-value=0.002 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|-|+|.+|+|||+||..++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877
No 431
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.51 E-value=0.037 Score=46.93 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=53.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCcc----ccCCCHH----
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNES----WKNKSMQ---- 234 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 234 (337)
+...++|+|.+|+|||+|+..+.+.. .-+.++++.+... ..+.++.+.+...-...... ....+..
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 56789999999999999999999887 2333477777654 44555555554331111100 0111111
Q ss_pred ------HHHHHHHHHhcCCcEEEEEecCCC
Q 045709 235 ------EKAQEIFKILSKKKFVLLLDDIWE 258 (337)
Q Consensus 235 ------~~~~~l~~~l~~k~~LlVlDdv~~ 258 (337)
..++.++. +++..|+++||+-.
T Consensus 89 ~~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 89 APYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hhccchhhhHHHhh--cCCceeehhhhhHH
Confidence 12223333 68999999999853
No 432
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.51 E-value=0.0019 Score=54.14 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|.+|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997765
No 433
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.51 E-value=0.0032 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998776
No 434
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.51 E-value=0.0067 Score=58.07 Aligned_cols=89 Identities=24% Similarity=0.208 Sum_probs=49.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEE-EEEecCccCHHHHHHHHHHHhC---CCCccccCCCH-----
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVI-WVVVSRDLQLEKIQESIAKKIG---LFNESWKNKSM----- 233 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~----- 233 (337)
....-.+|+|.+|+|||||++.+.+... ..+-++.+ .+-+....... ..|...+. ... . ...+.
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas-T-~D~p~~~~~~ 486 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS-T-FDRPPSDHTT 486 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE-C-CCCCHHHHHH
Confidence 3567789999999999999999998762 23334443 33444433221 22222221 000 0 11111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 234 -QEKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..+.-.+.+++ .++.+||++|++-.
T Consensus 487 ~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 487 VAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11222233444 68899999999853
No 435
>PRK05439 pantothenate kinase; Provisional
Probab=96.50 E-value=0.028 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 436
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.50 E-value=0.018 Score=56.41 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc---EEEEEEecC-----ccCHHH----------------HHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD---FVIWVVVSR-----DLQLEK----------------IQES 216 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~-----~~~~~~----------------~~~~ 216 (337)
....+++|+|.+|+|||||++.++.......+. +. .+.++.-.. ..++.+ -...
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 425 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA 425 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence 356799999999999999999998754111110 11 122332111 011111 1223
Q ss_pred HHHHhCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCChhH
Q 045709 217 IAKKIGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 217 i~~~l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
++..++... ......+..+..+. +...+..++-+|+||+.-+..+.. .+...+... .+ .||++|++...
T Consensus 426 ~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~--~viivsHd~~~ 502 (552)
T TIGR03719 426 YVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-AG--CAVVISHDRWF 502 (552)
T ss_pred HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-CC--eEEEEeCCHHH
Confidence 455555431 11234444444433 556667788999999986653321 111112211 24 48899998876
Q ss_pred Hhhc
Q 045709 289 CGQM 292 (337)
Q Consensus 289 ~~~~ 292 (337)
...+
T Consensus 503 ~~~~ 506 (552)
T TIGR03719 503 LDRI 506 (552)
T ss_pred HHHh
Confidence 5543
No 437
>PRK08149 ATP synthase SpaL; Validated
Probab=96.48 E-value=0.016 Score=54.08 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-ccCHHHHHHHHHHHhCCCCccc----cCCCHH---
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQESIAKKIGLFNESW----KNKSMQ--- 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~--- 234 (337)
.+...++|+|.+|+|||||+..+++.. ..+.+++..+.. ...+.++...+..........+ .+.+..
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 366789999999999999999987754 223333343332 3345566666655432211000 111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 235 ---EKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 235 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
...-.+.+++ +++.+||++||+-.
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222233443 58999999999854
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.48 E-value=0.025 Score=52.98 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=52.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc----ccCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNES----WKNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (337)
.+...++|+|.+|+|||||++.+++.. ..+.++++-+.... .+.++....+..-+..... ..+.+...
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 367789999999999999999998765 22345555555433 3445554444432221100 01111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 112233444 58999999999853
No 439
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.47 E-value=0.0026 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++.|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 440
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.47 E-value=0.034 Score=48.99 Aligned_cols=41 Identities=24% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
...++.|.|.+|+|||||+.+++.... ..+-..++|++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~ 69 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE 69 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc
Confidence 567889999999999999999987762 22245688888755
No 441
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.46 E-value=0.018 Score=44.07 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHHh----c---CCCeEEEEEecCCCcHHHHHHHHHHhhcc
Q 045709 144 PTVVGLQLTFDRVWRCLM----E---EHAGIVGLYGMGGVGKTTLLTQINNRFFD 191 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 191 (337)
..++|..-..+.+.+.+. + .++-|++.+|.+|+|||.+++.+++...+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 346776655555555553 3 25668999999999999999999888543
No 442
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.46 E-value=0.037 Score=50.77 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=38.8
Q ss_pred hHHHHHHHHhcC----CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCC
Q 045709 152 TFDRVWRCLMEE----HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLF 224 (337)
Q Consensus 152 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~ 224 (337)
....+..++..+ +.+++.++|+.|+||||-..+++..+ .....-..+..++..... ...+-+...++-++.+
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 334444444433 48999999999999997555555554 112333345555544321 2223334444444443
No 443
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.004 Score=58.26 Aligned_cols=123 Identities=23% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcE-----EEEEEec---------------Cc------cCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-----VIWVVVS---------------RD------LQLEKIQESI 217 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~~---------------~~------~~~~~~~~~i 217 (337)
..+..++||.+|+|||||.+.+.+.. -..|.. ..++... .. .+..++...+
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~---v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~ 181 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQ---VSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKI 181 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcC---cCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHH
Confidence 56788999999999999999999843 223321 1121100 00 0234444446
Q ss_pred HHHhCCCCcc----ccCCC-HHHHHHHHHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 218 AKKIGLFNES----WKNKS-MQEKAQEIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 218 ~~~l~~~~~~----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
+..++...+. ..+.+ .-.+.-.|.+.+-.++=||.||+--+..+.. .+..++.. .+ ..+||.|++....
T Consensus 182 L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~-~T~liVSHDr~FL 258 (582)
T KOG0062|consen 182 LAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WK-ITSLIVSHDRNFL 258 (582)
T ss_pred HHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CC-ceEEEEeccHHHH
Confidence 6666654321 11111 1123334556666788899999887664422 22233322 22 5789999998876
Q ss_pred hhc
Q 045709 290 GQM 292 (337)
Q Consensus 290 ~~~ 292 (337)
...
T Consensus 259 n~V 261 (582)
T KOG0062|consen 259 NTV 261 (582)
T ss_pred HHH
Confidence 554
No 444
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0034 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.|+|.+|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.0052 Score=50.97 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998765
No 446
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.45 E-value=0.0049 Score=55.97 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=38.6
Q ss_pred ccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+||.++.+..+.-.+.++...-+.|.|.+|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999888777777667778899999999999999997655
No 447
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.1 Score=44.68 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+=|.+-..+++.+...- +.++-|.++|++|+|||.||+.++++-
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 34566666666555421 356778899999999999999999876
No 448
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.45 E-value=0.0042 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
..++.|.|++|.||||+.+.+..
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999853
No 449
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.44 E-value=0.0024 Score=58.20 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=71.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC-CCc---EEEEEE-------e----cCccCHHHHHHHH-----------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-HFD---FVIWVV-------V----SRDLQLEKIQESI----------- 217 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~---~~~wv~-------~----~~~~~~~~~~~~i----------- 217 (337)
...++.|+|.+|+||||+.+++......... .|. ..+-+. + ...++-..++.++
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Av 487 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV 487 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHH
Confidence 5678999999999999999999876621111 010 111110 1 1112222333333
Q ss_pred --HHHhCCCCcc-----ccCCC-HHHHHHHHHHHhcCCcEEEEEecCCCccccc-c--ccCCCC--CCCCCCcEEEEeeC
Q 045709 218 --AKKIGLFNES-----WKNKS-MQEKAQEIFKILSKKKFVLLLDDIWELVDLD-Q--VGLPIP--SRTSVSNKVVFTTR 284 (337)
Q Consensus 218 --~~~l~~~~~~-----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-~--l~~~l~--~~~~g~s~IiiTtr 284 (337)
++..+..... +...+ .+.-..+|.+.+.++.-+++.|.+....+-. . +...+. ....| +.+++.|+
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g-iTlivvTh 566 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG-ITLIVVTH 566 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence 3333333211 11222 2333456778888999999999987653211 0 001111 11245 77787788
Q ss_pred ChhHHhhccCCcee
Q 045709 285 EFGVCGQMEAHRSF 298 (337)
Q Consensus 285 ~~~v~~~~~~~~~~ 298 (337)
++++...+.++..+
T Consensus 567 rpEv~~AL~PD~li 580 (593)
T COG2401 567 RPEVGNALRPDTLI 580 (593)
T ss_pred CHHHHhccCCceeE
Confidence 88887777555433
No 450
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.013 Score=51.20 Aligned_cols=91 Identities=21% Similarity=0.327 Sum_probs=57.7
Q ss_pred ccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 145 TVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
++-|-+...+.|.+...- ...+-|.++|++|.|||.||+.|+... ... |+++|.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nST-----FFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NST-----FFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCc-----eEEeehH----H
Confidence 456777777777766431 135779999999999999999998876 222 2344432 1
Q ss_pred HHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCc
Q 045709 213 IQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWEL 259 (337)
Q Consensus 213 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~ 259 (337)
+. -..++. .+.+...|.+.- .+++-+|.+|++++.
T Consensus 202 Lv---SKWmGE---------SEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 202 LV---SKWMGE---------SEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HH---HHHhcc---------HHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 11 112221 134445555544 468899999999854
No 451
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.43 E-value=0.022 Score=49.90 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=50.6
Q ss_pred CCeEEEEEecCCCcHHHHH-HHHHHhhccCCCCCcEE-EEEEecCc-cCHHHHHHHHHHHhCCCCcc----ccCCCHHH-
Q 045709 164 HAGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDFV-IWVVVSRD-LQLEKIQESIAKKIGLFNES----WKNKSMQE- 235 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 235 (337)
+...++|+|.+|+|||+|+ ..+.++. .-+.+ +++-+... ....++.+.+...-...... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 5678999999999999996 5555443 22333 55555544 34556666665432211100 01111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEecCCCc
Q 045709 236 -----KAQEIFKIL--SKKKFVLLLDDIWEL 259 (337)
Q Consensus 236 -----~~~~l~~~l--~~k~~LlVlDdv~~~ 259 (337)
..-.+.+++ +++..||++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112223333 588999999998643
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.42 E-value=0.0026 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|.|.|.+|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 453
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.42 E-value=0.012 Score=55.31 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc----cccCCCHH----
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE----SWKNKSMQ---- 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 234 (337)
.+...++|+|.+|+|||||++.+.... ..-..++++.-.+.....++....+..-+.... ...+.+..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 467899999999999999999887755 122244554433444455443332221111000 00111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 235 --EKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 235 --~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
...-.+.+++ +++..||++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 1122233444 58999999999853
No 454
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.42 E-value=0.031 Score=50.43 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=51.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec-CccCHHHHHHHHHHHhCCCCcc----ccCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS-RDLQLEKIQESIAKKIGLFNES----WKNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (337)
.....++|+|.+|+|||||++.+.+.. . -+..+..-+. ....+.++.......-+..... ..+.+...
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 356789999999999999999888765 1 2233333333 3345555555555443221100 01111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++||+-.
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111223333 58899999999753
No 455
>PRK06217 hypothetical protein; Validated
Probab=96.40 E-value=0.0028 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|.+|+|||||++.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 456
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.39 E-value=0.02 Score=56.28 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|++|+|||||++.+...+
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997755
No 457
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.38 E-value=0.0052 Score=55.92 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=40.3
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+||.++.+..|...+.++..+-+.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999888888777778899999999999999997766
No 458
>PRK13949 shikimate kinase; Provisional
Probab=96.38 E-value=0.0033 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999887
No 459
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.38 E-value=0.0059 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|+|++|+||||+++.+...+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 460
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.38 E-value=0.0062 Score=49.60 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++|....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777788887777654 334566799999999999999998865
No 461
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.38 E-value=0.61 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
+.+++.|.|+++.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 467899999999999999998854
No 462
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0061 Score=47.68 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=55.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
.+-|.|.|-||+|||||+..++... .| -|+++++-..-..+....=+.. .....+.+.+.+.|-..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y-----~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEY-----KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhcccccc-----cCccccHHHHHHHHHHHH
Confidence 4678899999999999999998654 22 3555554322222211111110 113345666777777766
Q ss_pred cCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhcc
Q 045709 245 SKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 245 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
.+..+++ | |.. ...||..--. --+++||-+..+...+.
T Consensus 74 ~~Gg~IV--D-------yHg-Cd~Fperwfd-lVvVLr~~~s~LY~RL~ 111 (176)
T KOG3347|consen 74 IEGGNIV--D-------YHG-CDFFPERWFD-LVVVLRTPNSVLYDRLK 111 (176)
T ss_pred hcCCcEE--e-------ecc-cCccchhhee-EEEEEecCchHHHHHHH
Confidence 5544322 1 111 1223332223 35666776666555443
No 463
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.37 E-value=0.0023 Score=49.04 Aligned_cols=28 Identities=39% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCcE
Q 045709 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFDF 198 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 198 (337)
|.|.|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 566754
No 464
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.37 E-value=0.017 Score=54.42 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=58.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCcc----ccCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNES----WKNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (337)
.+...++|+|.+|+|||||+.++.+... ..+-+.++++-+... ....++...+...-...... ..+.+...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 3567899999999999999999988873 235677777776544 34556666665432221100 01122211
Q ss_pred ----HHHHHHHHh---cCCcEEEEEecCC
Q 045709 236 ----KAQEIFKIL---SKKKFVLLLDDIW 257 (337)
Q Consensus 236 ----~~~~l~~~l---~~k~~LlVlDdv~ 257 (337)
..-.+.+++ .++.+||++|++-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 222344555 3789999999984
No 465
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.37 E-value=0.0028 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997764
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.37 E-value=0.023 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++...++|+|.+|+|||||++.+...+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997755
No 467
>PRK13947 shikimate kinase; Provisional
Probab=96.37 E-value=0.0034 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|+|++|+||||+++.+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 468
>PLN02165 adenylate isopentenyltransferase
Probab=96.37 E-value=0.0042 Score=55.84 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=25.9
Q ss_pred HhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 160 LMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 160 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.+....+++|+|+.|+|||+||..++...
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345567799999999999999999998876
No 469
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.36 E-value=0.009 Score=55.17 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=31.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 152 TFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 152 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++.+++.+.......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 44556666666677899999999999999999999888
No 470
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.005 Score=52.30 Aligned_cols=127 Identities=18% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccC------------CC-----CCcEE--EEEE----ecCccCHHHH------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDT------------PN-----HFDFV--IWVV----VSRDLQLEKI------ 213 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~-----~f~~~--~wv~----~~~~~~~~~~------ 213 (337)
....+++|+|.+|+|||||++.+..-.... .. .|..+ +|-+ +.+..++.++
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 367899999999999999999997644100 00 11111 2211 1111122222
Q ss_pred ----------HHHHHHHhCCCCcc----ccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccc-------cccccCCCCC
Q 045709 214 ----------QESIAKKIGLFNES----WKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVD-------LDQVGLPIPS 271 (337)
Q Consensus 214 ----------~~~i~~~l~~~~~~----~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~~ 271 (337)
..+++.+.+.+..- ....+..++++. +.+.|.-++-+||+|+.-+..| |+-+.. +.
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~-l~- 188 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-LK- 188 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHH-HH-
Confidence 23444555554311 133455555554 6677888889999999765422 322211 11
Q ss_pred CCCCCcEEEEeeCChhHHhhc
Q 045709 272 RTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~~ 292 (337)
...+ -.+|+.|++-.+...+
T Consensus 189 ~~~~-lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 189 KERG-LTYLFISHDLALVEHM 208 (252)
T ss_pred HhcC-ceEEEEeCcHHHHHHH
Confidence 1233 5789999998776554
No 471
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.36 E-value=0.033 Score=48.15 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
...++.|.|.+|+|||+++..++.+.. ..+-..++|++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC
Confidence 557999999999999999999877762 22234577777554
No 472
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.35 E-value=0.0035 Score=52.85 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||++.+....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998876
No 473
>PHA02774 E1; Provisional
Probab=96.35 E-value=0.0097 Score=57.11 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcC-CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe
Q 045709 152 TFDRVWRCLMEE-HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (337)
Q Consensus 152 ~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (337)
-+..|..+|.+. +...+.|+|++|+|||.||..+.+-+ . ...+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L---~--G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL---K--GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEEEEC
Confidence 445566666543 35689999999999999999998876 2 334566664
No 474
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.34 E-value=0.014 Score=57.25 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++..|.|.+|+||||++..+.....+....-...+.+.....-....+...+..
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 35789999999999999999888765221111124555655554444455444443
No 475
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.34 E-value=0.19 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred eeecCCCCHHHHHHHHhHhhCCC
Q 045709 297 SFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
++++++++.+|+..++..+.-..
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCC
Confidence 78999999999999999887544
No 476
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.33 E-value=0.0056 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|.|+|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998766
No 477
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.33 E-value=0.018 Score=53.95 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc
Confidence 467889999999999999999887754
No 478
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.33 E-value=0.02 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+..-+
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997765
No 479
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.33 E-value=0.024 Score=55.23 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++...++|+|.+|+|||||++.+..-+
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997755
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.33 E-value=0.0046 Score=51.35 Aligned_cols=121 Identities=15% Similarity=0.063 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC--CCccccC
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL--FNESWKN 230 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~~~~~ 230 (337)
...++..... ....+.|+|.+|+|||||++.+.... .... .++.+ ... .++...-...... ..+....
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i---~~~~-~~i~i--ed~---~E~~~~~~~~~~~~~~~~~~~~ 83 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI---PPDE-RIITI--EDT---AELQLPHPNWVRLVTRPGNVEG 83 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc---CCCC-CEEEE--CCc---cccCCCCCCEEEEEEecCCCCC
Confidence 3344443333 46789999999999999999988765 2221 22222 111 0100000000000 0000001
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcE-EEEeeCChhH
Q 045709 231 KSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNK-VVFTTREFGV 288 (337)
Q Consensus 231 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~-IiiTtr~~~v 288 (337)
.......+.+...++..+=.++++++.+.+.+.-+... ..| .. ++.|.+-.+.
T Consensus 84 ~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~----~tG-h~g~~~T~Ha~s~ 137 (186)
T cd01130 84 SGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM----NTG-HPGGMTTIHANSA 137 (186)
T ss_pred CCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH----hcC-CCCceeeecCCCH
Confidence 11223445566677777888999999887766543322 234 44 5555554443
No 481
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.0061 Score=51.13 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..++.|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 482
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.32 E-value=0.0041 Score=50.67 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 483
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.32 E-value=0.0036 Score=49.19 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|+|++|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 484
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.31 E-value=0.022 Score=56.08 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+...+
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 467899999999999999999997655
No 485
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.31 E-value=0.023 Score=53.35 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=50.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec-CccCHHHHHHHHHHHhCCCCc----cccCCCHH---
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS-RDLQLEKIQESIAKKIGLFNE----SWKNKSMQ--- 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 234 (337)
.....++|+|.+|+|||||.+.+.... . .+......+. +...+.++..+.......... .....+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~----~-~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA----S-ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC----C-CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 456788999999999999999998755 1 2223333333 334455555444433211110 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecCCC
Q 045709 235 ---EKAQEIFKIL--SKKKFVLLLDDIWE 258 (337)
Q Consensus 235 ---~~~~~l~~~l--~~k~~LlVlDdv~~ 258 (337)
.....+.+++ ++++.|+++|++-.
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 1122233444 47899999999863
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.30 E-value=0.0031 Score=52.20 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.30 E-value=0.0034 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++++|+|++|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998754
No 488
>PRK14528 adenylate kinase; Provisional
Probab=96.30 E-value=0.0071 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|.|.|++|+||||+++.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998766
No 489
>PRK14530 adenylate kinase; Provisional
Probab=96.30 E-value=0.0037 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|.|+|++|+||||+++.+...+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 490
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.27 E-value=0.035 Score=48.64 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=57.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc-CCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCccc----cCCCHHH--
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD-TPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNESW----KNKSMQE-- 235 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~~-- 235 (337)
+...++|+|-.|+|||+|+..+.++..- ...+-+.++++-+.+.. ...++...+...-....... .+.+...
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 5678899999999999999998877510 11235677888876653 45566666655422211000 1111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL---SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l---~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ .+++.||++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 122244444 26899999999854
No 491
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.13 Score=44.41 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++=|-+..+++|++.+.- ..++-+..+|++|.|||-+|+..+.+-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3456788889998887632 246678899999999999999998765
No 492
>PF13245 AAA_19: Part of AAA domain
Probab=96.25 E-value=0.014 Score=40.69 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=19.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788889999999996555544444
No 493
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.021 Score=50.57 Aligned_cols=60 Identities=28% Similarity=0.294 Sum_probs=38.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCC-------CcEEEEEEecCc-cCHHHHHHHHHHHhCCCC
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-------FDFVIWVVVSRD-LQLEKIQESIAKKIGLFN 225 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 225 (337)
.++.|+|.||+|||||+..++=.....++. ...+++|++... .++-.-++.+..+++++.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 455677999999999998765433222222 336778877543 345555677788887754
No 494
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.24 E-value=0.035 Score=53.76 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCc-------------cccC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE-------------SWKN 230 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~ 230 (337)
...++.|.|.+|+|||+|+..++... ...-..++|++.... ...+...+ ..++.... ....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 56789999999999999999998776 234467888877653 44444433 34432210 0012
Q ss_pred CCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 045709 231 KSMQEKAQEIFKILSK-KKFVLLLDDIWE 258 (337)
Q Consensus 231 ~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 258 (337)
.+.++....+...+.. +.-++|+|.+..
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 2345566666666543 555899999853
No 495
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.24 E-value=0.012 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 496
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.23 E-value=0.37 Score=45.69 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
+..++.|-|.+|+|||+++..+..+... .+-..++|++...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~--~~g~~vl~~SlEm 234 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAI--KEGKPVAFFSLEM 234 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCeEEEEeCcC
Confidence 5678999999999999999999877521 1223566766543
No 497
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.23 E-value=0.017 Score=44.49 Aligned_cols=37 Identities=19% Similarity=-0.040 Sum_probs=26.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV 204 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 204 (337)
.+.|.|..|+|||+.+..+..... .......++|++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~-~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL-DSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH-hcccCCCEEEEcC
Confidence 467999999999999988877773 2234556666643
No 498
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.23 E-value=0.039 Score=51.99 Aligned_cols=94 Identities=19% Similarity=0.340 Sum_probs=57.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCcc----ccCCCHHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNES----WKNKSMQE-- 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 235 (337)
.....++|+|.+|+|||||+.++..... .++-..++++-+... ..+.++...+...-...... ..+.+...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3567899999999999999999877762 122245667766544 34566666666543221100 01122211
Q ss_pred ----HHHHHHHHh---cCCcEEEEEecCCC
Q 045709 236 ----KAQEIFKIL---SKKKFVLLLDDIWE 258 (337)
Q Consensus 236 ----~~~~l~~~l---~~k~~LlVlDdv~~ 258 (337)
..-.+.+++ +++.+||++|++-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 122344555 67899999999853
No 499
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.22 E-value=0.014 Score=49.85 Aligned_cols=53 Identities=28% Similarity=0.344 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccC----CCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDT----PNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
+..|.|++|.||||++..+....... .......+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 78899999999998776666655110 133444455555555567777777666
No 500
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.21 E-value=0.033 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+...+
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
Done!