Query 045709
Match_columns 337
No_of_seqs 373 out of 2243
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.6E-30 3.3E-34 245.3 18.6 181 147-337 131-325 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1E-23 3.4E-28 221.2 17.7 185 140-336 120-315 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.5E-24 5.3E-29 215.0 10.7 165 144-317 128-312 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.5E-22 8.7E-27 195.4 15.5 168 141-319 121-302 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 2.1E-16 7.3E-21 119.2 8.2 78 9-93 1-79 (115)
6 1w5s_A Origin recognition comp 99.5 2.7E-14 9.3E-19 132.4 12.4 172 143-316 21-228 (412)
7 2qby_B CDC6 homolog 3, cell di 99.5 1.9E-13 6.4E-18 125.6 14.3 171 144-316 20-210 (384)
8 2qby_A CDC6 homolog 1, cell di 99.5 1.5E-13 5.1E-18 126.0 10.9 172 143-316 19-210 (386)
9 2qen_A Walker-type ATPase; unk 99.5 3.6E-13 1.2E-17 121.9 12.7 162 143-316 11-216 (350)
10 2v1u_A Cell division control p 99.4 1.3E-12 4.3E-17 119.9 14.7 170 144-316 19-214 (387)
11 2fna_A Conserved hypothetical 99.4 1.3E-12 4.4E-17 118.5 14.5 162 143-316 12-222 (357)
12 1fnn_A CDC6P, cell division co 99.4 3.7E-12 1.3E-16 117.0 17.4 169 144-317 17-207 (389)
13 2chg_A Replication factor C sm 99.3 5.1E-11 1.8E-15 100.2 12.6 155 144-317 17-175 (226)
14 1njg_A DNA polymerase III subu 99.2 8.1E-11 2.8E-15 100.3 12.4 166 144-318 23-200 (250)
15 1sxj_B Activator 1 37 kDa subu 99.1 3.2E-10 1.1E-14 101.3 9.8 155 144-317 21-180 (323)
16 3te6_A Regulatory protein SIR3 99.1 1.2E-09 4E-14 96.9 13.3 168 146-316 22-211 (318)
17 1jbk_A CLPB protein; beta barr 99.0 4.5E-10 1.5E-14 92.1 7.9 151 144-312 22-194 (195)
18 1iqp_A RFCS; clamp loader, ext 99.0 1.1E-09 3.7E-14 98.0 8.0 153 144-319 25-185 (327)
19 3h4m_A Proteasome-activating n 98.9 4.8E-09 1.6E-13 92.1 10.4 166 144-333 17-218 (285)
20 2chq_A Replication factor C sm 98.9 9.7E-09 3.3E-13 91.4 10.4 152 144-318 17-176 (319)
21 2z4s_A Chromosomal replication 98.7 4.6E-08 1.6E-12 91.3 11.1 154 145-317 106-277 (440)
22 1jr3_A DNA polymerase III subu 98.7 1E-07 3.4E-12 86.8 12.4 160 144-316 16-191 (373)
23 3syl_A Protein CBBX; photosynt 98.7 8E-08 2.7E-12 85.2 10.6 151 145-317 32-218 (309)
24 3bos_A Putative DNA replicatio 98.7 9.5E-09 3.3E-13 87.5 4.3 144 144-317 28-188 (242)
25 3pvs_A Replication-associated 98.6 3.6E-07 1.2E-11 85.2 14.0 144 144-317 26-179 (447)
26 3cf0_A Transitional endoplasmi 98.6 1.8E-06 6.1E-11 76.3 16.1 165 144-332 15-215 (301)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.6 2.8E-07 9.5E-12 79.6 10.6 150 144-317 6-191 (262)
28 1sxj_D Activator 1 41 kDa subu 98.6 1.2E-07 3.9E-12 85.7 8.4 167 144-319 37-208 (353)
29 1l8q_A Chromosomal replication 98.5 3.2E-07 1.1E-11 82.0 10.3 142 153-317 23-180 (324)
30 1xwi_A SKD1 protein; VPS4B, AA 98.5 3.6E-06 1.2E-10 75.1 17.0 152 144-319 12-195 (322)
31 3eie_A Vacuolar protein sortin 98.5 4.7E-07 1.6E-11 80.9 10.8 149 144-319 18-200 (322)
32 1sxj_E Activator 1 40 kDa subu 98.5 1.2E-07 4.2E-12 85.7 7.1 165 144-317 14-207 (354)
33 3uk6_A RUVB-like 2; hexameric 98.5 4E-07 1.4E-11 82.8 10.4 46 144-189 44-94 (368)
34 2p65_A Hypothetical protein PF 98.5 2.6E-07 8.8E-12 75.1 8.2 46 144-189 22-67 (187)
35 1d2n_A N-ethylmaleimide-sensit 98.5 7.7E-07 2.6E-11 77.4 11.2 149 144-315 33-211 (272)
36 2gno_A DNA polymerase III, gam 98.5 6.5E-07 2.2E-11 79.2 10.8 147 148-316 1-152 (305)
37 1sxj_A Activator 1 95 kDa subu 98.5 7.4E-07 2.5E-11 84.8 11.9 159 144-318 39-224 (516)
38 3u61_B DNA polymerase accessor 98.5 7.4E-07 2.5E-11 79.6 10.4 137 144-309 26-171 (324)
39 3pxg_A Negative regulator of g 98.4 1.2E-06 4.1E-11 82.3 11.9 149 144-317 180-339 (468)
40 3hu3_A Transitional endoplasmi 98.4 3E-06 1E-10 79.8 14.1 166 144-333 204-402 (489)
41 2qp9_X Vacuolar protein sortin 98.4 1.1E-06 3.7E-11 79.6 10.6 149 144-319 51-233 (355)
42 1qvr_A CLPB protein; coiled co 98.4 7E-07 2.4E-11 90.1 10.2 153 144-315 170-344 (854)
43 4b4t_J 26S protease regulatory 98.4 3.3E-06 1.1E-10 76.8 13.0 165 144-333 148-349 (405)
44 1sxj_C Activator 1 40 kDa subu 98.4 1.5E-06 5.1E-11 78.2 10.7 147 144-316 25-182 (340)
45 1hqc_A RUVB; extended AAA-ATPa 98.4 4.1E-06 1.4E-10 74.5 13.3 144 144-318 12-183 (324)
46 3pfi_A Holliday junction ATP-d 98.4 2E-06 6.8E-11 77.2 11.0 142 144-317 29-198 (338)
47 2zan_A Vacuolar protein sortin 98.4 5.5E-06 1.9E-10 77.3 14.1 152 144-318 134-316 (444)
48 3d8b_A Fidgetin-like protein 1 98.4 4.4E-06 1.5E-10 75.7 13.1 149 144-317 84-265 (357)
49 2r62_A Cell division protease 98.3 1.4E-06 4.7E-11 75.5 9.0 150 144-317 11-197 (268)
50 4b4t_L 26S protease subunit RP 98.3 3.8E-06 1.3E-10 77.5 12.2 164 144-332 181-381 (437)
51 3vfd_A Spastin; ATPase, microt 98.3 5.9E-06 2E-10 75.7 13.5 151 144-318 115-297 (389)
52 3b9p_A CG5977-PA, isoform A; A 98.3 9.8E-06 3.4E-10 71.2 14.3 147 144-317 21-203 (297)
53 1r6b_X CLPA protein; AAA+, N-t 98.3 8.9E-06 3.1E-10 81.1 15.2 154 144-316 186-362 (758)
54 1a5t_A Delta prime, HOLB; zinc 98.3 7.4E-06 2.5E-10 73.4 13.1 157 150-316 8-180 (334)
55 3n70_A Transport activator; si 98.3 3.9E-07 1.3E-11 71.4 4.1 45 145-189 2-48 (145)
56 2ce7_A Cell division protein F 98.3 8E-06 2.7E-10 76.4 13.4 164 144-331 16-214 (476)
57 4b4t_H 26S protease regulatory 98.3 8.2E-06 2.8E-10 75.3 12.9 164 145-333 210-410 (467)
58 1lv7_A FTSH; alpha/beta domain 98.3 2E-05 6.7E-10 67.8 14.5 151 144-318 12-197 (257)
59 1ofh_A ATP-dependent HSL prote 98.3 5.3E-06 1.8E-10 73.2 10.8 46 144-189 15-74 (310)
60 3pxi_A Negative regulator of g 98.2 6.2E-06 2.1E-10 82.2 12.2 151 144-317 180-339 (758)
61 3ec2_A DNA replication protein 98.2 5.3E-07 1.8E-11 73.3 3.6 116 149-285 19-142 (180)
62 4b4t_I 26S protease regulatory 98.2 1.9E-05 6.5E-10 72.2 13.9 164 145-333 183-383 (437)
63 4fcw_A Chaperone protein CLPB; 98.2 7.1E-06 2.4E-10 72.5 10.8 59 145-206 18-85 (311)
64 4b4t_K 26S protease regulatory 98.2 2.3E-05 7.7E-10 72.2 12.9 166 144-333 172-374 (428)
65 2bjv_A PSP operon transcriptio 98.1 4.5E-06 1.5E-10 72.2 7.6 46 144-189 6-53 (265)
66 1ojl_A Transcriptional regulat 98.1 4.6E-06 1.6E-10 73.8 7.2 46 144-189 2-49 (304)
67 4b4t_M 26S protease regulatory 98.1 9.3E-06 3.2E-10 74.9 9.3 165 144-333 181-382 (434)
68 2kjq_A DNAA-related protein; s 98.1 1.2E-06 4.1E-11 69.0 2.8 39 164-205 35-73 (149)
69 2w58_A DNAI, primosome compone 98.0 1.5E-05 5.3E-10 65.7 8.4 113 152-286 37-159 (202)
70 3co5_A Putative two-component 98.0 2.1E-06 7.3E-11 67.0 2.9 45 145-189 5-51 (143)
71 3pxi_A Negative regulator of g 98.0 4.4E-06 1.5E-10 83.3 5.3 145 144-316 491-675 (758)
72 3cf2_A TER ATPase, transitiona 98.0 5.4E-05 1.8E-09 75.0 12.3 165 145-333 205-402 (806)
73 1iy2_A ATP-dependent metallopr 97.9 0.00028 9.5E-09 61.3 15.2 164 144-331 40-238 (278)
74 1ypw_A Transitional endoplasmi 97.9 8.6E-05 3E-09 74.2 13.2 163 144-331 204-400 (806)
75 2x8a_A Nuclear valosin-contain 97.9 0.00026 8.8E-09 61.5 14.6 164 144-332 10-210 (274)
76 2dhr_A FTSH; AAA+ protein, hex 97.9 0.00019 6.7E-09 67.4 13.9 146 144-317 31-215 (499)
77 1ixz_A ATP-dependent metallopr 97.9 0.00028 9.7E-09 60.3 13.6 164 144-331 16-214 (254)
78 3m6a_A ATP-dependent protease 97.8 0.00017 5.9E-09 68.8 12.9 154 144-316 81-266 (543)
79 3t15_A Ribulose bisphosphate c 97.8 0.00016 5.6E-09 63.4 11.5 26 164-189 35-60 (293)
80 2cvh_A DNA repair and recombin 97.7 0.00016 5.5E-09 60.2 9.2 90 163-259 18-117 (220)
81 3hr8_A Protein RECA; alpha and 97.7 0.00019 6.4E-09 64.6 10.0 88 164-259 60-151 (356)
82 1n0w_A DNA repair protein RAD5 97.6 0.00035 1.2E-08 59.0 10.7 94 164-259 23-131 (243)
83 2w0m_A SSO2452; RECA, SSPF, un 97.6 9.4E-05 3.2E-09 62.1 6.7 116 164-286 22-168 (235)
84 1qvr_A CLPB protein; coiled co 97.6 9.1E-05 3.1E-09 74.7 7.6 45 145-189 559-612 (854)
85 2zr9_A Protein RECA, recombina 97.6 0.00033 1.1E-08 63.0 10.0 88 164-259 60-151 (349)
86 2z43_A DNA repair and recombin 97.5 0.00081 2.8E-08 59.8 11.8 94 164-258 106-214 (324)
87 3io5_A Recombination and repai 97.5 0.00098 3.3E-08 58.5 11.9 89 165-259 28-123 (333)
88 1v5w_A DMC1, meiotic recombina 97.5 0.0011 3.6E-08 59.5 12.4 94 164-259 121-231 (343)
89 1r6b_X CLPA protein; AAA+, N-t 97.5 0.0002 6.8E-09 71.4 8.1 46 144-189 458-512 (758)
90 1xp8_A RECA protein, recombina 97.5 0.00053 1.8E-08 61.9 10.2 88 164-259 73-164 (366)
91 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00016 5.4E-09 63.7 5.9 71 164-259 122-194 (331)
92 1u94_A RECA protein, recombina 97.4 0.00047 1.6E-08 62.1 8.9 88 164-259 62-153 (356)
93 1g5t_A COB(I)alamin adenosyltr 97.4 8.8E-05 3E-09 60.5 3.8 116 164-287 27-164 (196)
94 2b8t_A Thymidine kinase; deoxy 97.4 5.2E-05 1.8E-09 63.6 2.5 112 163-284 10-124 (223)
95 2cbz_A Multidrug resistance-as 97.4 0.00068 2.3E-08 57.4 9.4 27 163-189 29-55 (237)
96 2c9o_A RUVB-like 1; hexameric 97.4 0.00037 1.3E-08 65.1 8.0 46 144-189 37-87 (456)
97 2pze_A Cystic fibrosis transme 97.3 0.0026 8.9E-08 53.5 12.2 26 164-189 33-58 (229)
98 3cf2_A TER ATPase, transitiona 97.3 0.0006 2.1E-08 67.6 8.6 165 144-332 477-677 (806)
99 2i1q_A DNA repair and recombin 97.3 0.0015 5E-08 58.0 10.4 94 164-258 97-215 (322)
100 4a74_A DNA repair and recombin 97.3 0.0019 6.4E-08 54.0 10.3 94 164-258 24-136 (231)
101 3lda_A DNA repair protein RAD5 97.2 0.0033 1.1E-07 57.4 12.1 94 164-258 177-284 (400)
102 2qgz_A Helicase loader, putati 97.2 0.00048 1.6E-08 60.8 6.2 40 150-189 134-176 (308)
103 1in4_A RUVB, holliday junction 97.2 0.00029 9.9E-09 63.0 4.5 46 144-189 25-75 (334)
104 1rz3_A Hypothetical protein rb 97.1 0.00061 2.1E-08 56.1 6.0 42 148-189 2-46 (201)
105 3tui_C Methionine import ATP-b 97.1 0.0053 1.8E-07 55.2 11.9 128 163-291 52-229 (366)
106 3c8u_A Fructokinase; YP_612366 97.1 0.00053 1.8E-08 56.7 5.1 39 151-189 6-46 (208)
107 1pzn_A RAD51, DNA repair and r 97.1 0.0027 9.3E-08 57.0 10.0 95 164-259 130-243 (349)
108 3dm5_A SRP54, signal recogniti 97.0 0.0046 1.6E-07 57.0 11.0 26 164-189 99-124 (443)
109 3jvv_A Twitching mobility prot 97.0 0.00013 4.3E-09 65.8 0.5 116 162-290 120-235 (356)
110 1ypw_A Transitional endoplasmi 97.0 5.7E-05 2E-09 75.5 -2.4 46 144-189 477-535 (806)
111 2px0_A Flagellar biosynthesis 96.9 0.0034 1.2E-07 54.9 9.1 86 164-255 104-190 (296)
112 3kl4_A SRP54, signal recogniti 96.9 0.0065 2.2E-07 55.9 11.2 26 164-189 96-121 (433)
113 3bh0_A DNAB-like replicative h 96.9 0.0051 1.7E-07 54.3 10.2 52 163-219 66-117 (315)
114 1cr0_A DNA primase/helicase; R 96.9 0.0062 2.1E-07 53.1 10.6 41 163-205 33-73 (296)
115 2orw_A Thymidine kinase; TMTK, 96.9 4.5E-05 1.5E-09 62.1 -3.0 25 165-189 3-27 (184)
116 3e70_C DPA, signal recognition 96.9 0.0048 1.6E-07 54.8 9.7 27 163-189 127-153 (328)
117 3ice_A Transcription terminati 96.9 0.00061 2.1E-08 61.4 3.9 51 156-207 164-215 (422)
118 1zp6_A Hypothetical protein AT 96.9 0.00067 2.3E-08 55.1 3.8 26 163-188 7-32 (191)
119 1vma_A Cell division protein F 96.9 0.0048 1.7E-07 54.2 9.4 90 164-257 103-196 (306)
120 2dr3_A UPF0273 protein PH0284; 96.8 0.0038 1.3E-07 52.6 8.5 40 164-206 22-61 (247)
121 2r44_A Uncharacterized protein 96.8 0.00093 3.2E-08 59.4 4.8 44 144-189 27-70 (331)
122 3uie_A Adenylyl-sulfate kinase 96.8 0.00089 3.1E-08 55.0 4.4 29 161-189 21-49 (200)
123 4eun_A Thermoresistant glucoki 96.8 0.00077 2.6E-08 55.4 3.9 27 163-189 27-53 (200)
124 1qhx_A CPT, protein (chloramph 96.8 0.00076 2.6E-08 54.1 3.8 25 165-189 3-27 (178)
125 1kgd_A CASK, peripheral plasma 96.8 0.00085 2.9E-08 54.1 3.7 25 165-189 5-29 (180)
126 3vaa_A Shikimate kinase, SK; s 96.8 0.0009 3.1E-08 54.9 3.9 26 164-189 24-49 (199)
127 3kb2_A SPBC2 prophage-derived 96.8 0.00086 2.9E-08 53.3 3.6 24 166-189 2-25 (173)
128 3lw7_A Adenylate kinase relate 96.7 0.00085 2.9E-08 53.3 3.4 23 166-189 2-24 (179)
129 3tr0_A Guanylate kinase, GMP k 96.7 0.00097 3.3E-08 54.7 3.7 26 164-189 6-31 (205)
130 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.7E-08 53.7 3.9 27 163-189 11-37 (186)
131 1kag_A SKI, shikimate kinase I 96.7 0.0009 3.1E-08 53.3 3.3 24 166-189 5-28 (173)
132 3hws_A ATP-dependent CLP prote 96.7 0.0019 6.6E-08 58.2 5.8 45 145-189 16-75 (363)
133 2iw3_A Elongation factor 3A; a 96.7 0.006 2E-07 61.7 9.5 124 164-291 460-610 (986)
134 2ffh_A Protein (FFH); SRP54, s 96.7 0.0086 2.9E-07 55.0 9.9 26 164-189 97-122 (425)
135 3sr0_A Adenylate kinase; phosp 96.7 0.0068 2.3E-07 50.0 8.4 23 167-189 2-24 (206)
136 1g8p_A Magnesium-chelatase 38 96.6 0.00098 3.3E-08 59.6 3.4 46 144-189 24-69 (350)
137 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0016 5.6E-08 61.2 5.0 44 144-189 22-65 (500)
138 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.9E-08 52.3 4.0 26 164-189 7-32 (175)
139 3cmu_A Protein RECA, recombina 96.6 0.0055 1.9E-07 66.2 9.4 87 163-257 1425-1515(2050)
140 1ye8_A Protein THEP1, hypothet 96.6 0.0012 4.3E-08 53.1 3.6 23 167-189 2-24 (178)
141 1ly1_A Polynucleotide kinase; 96.6 0.0013 4.3E-08 52.7 3.7 22 166-187 3-24 (181)
142 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.4E-08 53.1 3.7 25 165-189 5-29 (185)
143 2ck3_D ATP synthase subunit be 96.6 0.027 9.4E-07 52.1 12.8 63 156-220 143-207 (482)
144 1um8_A ATP-dependent CLP prote 96.6 0.003 1E-07 57.2 6.5 45 145-189 22-96 (376)
145 2rhm_A Putative kinase; P-loop 96.6 0.0016 5.3E-08 52.9 4.1 26 164-189 4-29 (193)
146 3a00_A Guanylate kinase, GMP k 96.6 0.001 3.6E-08 53.9 3.1 24 166-189 2-25 (186)
147 3tau_A Guanylate kinase, GMP k 96.6 0.0013 4.5E-08 54.4 3.7 27 163-189 6-32 (208)
148 2hf9_A Probable hydrogenase ni 96.6 0.0026 9.1E-08 52.9 5.6 39 151-189 24-62 (226)
149 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4E-08 54.3 3.3 25 165-189 18-42 (202)
150 3asz_A Uridine kinase; cytidin 96.6 0.0016 5.5E-08 53.8 4.1 27 163-189 4-30 (211)
151 3j16_B RLI1P; ribosome recycli 96.6 0.017 5.8E-07 55.7 11.7 77 213-292 201-287 (608)
152 2bbw_A Adenylate kinase 4, AK4 96.6 0.0015 5E-08 55.6 3.9 26 164-189 26-51 (246)
153 4gp7_A Metallophosphoesterase; 96.6 0.0012 4.1E-08 52.8 3.1 22 164-185 8-29 (171)
154 1nks_A Adenylate kinase; therm 96.6 0.0016 5.4E-08 52.7 3.9 24 166-189 2-25 (194)
155 1j8m_F SRP54, signal recogniti 96.5 0.0094 3.2E-07 52.1 8.9 89 165-256 98-189 (297)
156 1lvg_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 54.0 3.2 25 165-189 4-28 (198)
157 1odf_A YGR205W, hypothetical 3 96.5 0.003 1E-07 55.1 5.7 56 163-218 29-84 (290)
158 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.6E-08 54.1 3.3 26 164-189 11-36 (204)
159 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.4E-08 53.5 3.7 26 164-189 5-30 (207)
160 1kht_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 52.6 3.7 24 166-189 4-27 (192)
161 3iij_A Coilin-interacting nucl 96.5 0.0015 5.2E-08 52.5 3.5 25 165-189 11-35 (180)
162 1znw_A Guanylate kinase, GMP k 96.5 0.0016 5.6E-08 53.7 3.7 27 163-189 18-44 (207)
163 1htw_A HI0065; nucleotide-bind 96.5 0.0019 6.6E-08 50.9 3.9 27 163-189 31-57 (158)
164 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.6E-08 52.7 3.6 23 166-188 3-25 (189)
165 2wsm_A Hydrogenase expression/ 96.5 0.0025 8.4E-08 52.9 4.7 42 148-189 13-54 (221)
166 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0086 2.9E-07 55.5 8.6 93 164-258 150-256 (473)
167 1ex7_A Guanylate kinase; subst 96.5 0.0013 4.5E-08 53.4 2.8 24 166-189 2-25 (186)
168 2plr_A DTMP kinase, probable t 96.5 0.005 1.7E-07 50.5 6.5 25 165-189 4-28 (213)
169 1ls1_A Signal recognition part 96.5 0.011 3.9E-07 51.5 9.1 90 164-256 97-189 (295)
170 2c95_A Adenylate kinase 1; tra 96.5 0.0021 7.1E-08 52.2 4.0 26 164-189 8-33 (196)
171 1tev_A UMP-CMP kinase; ploop, 96.5 0.002 6.9E-08 52.2 3.9 25 165-189 3-27 (196)
172 1g41_A Heat shock protein HSLU 96.4 0.0027 9.3E-08 58.6 5.1 46 144-189 15-74 (444)
173 1gvn_B Zeta; postsegregational 96.4 0.0035 1.2E-07 54.6 5.5 26 164-189 32-57 (287)
174 2yhs_A FTSY, cell division pro 96.4 0.013 4.3E-07 54.8 9.4 26 164-189 292-317 (503)
175 3tqc_A Pantothenate kinase; bi 96.4 0.02 6.9E-07 50.5 10.4 26 164-189 91-116 (321)
176 1via_A Shikimate kinase; struc 96.4 0.0017 5.8E-08 51.9 3.2 24 166-189 5-28 (175)
177 4a1f_A DNAB helicase, replicat 96.4 0.017 5.7E-07 51.4 9.8 91 163-258 44-167 (338)
178 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0044 1.5E-07 55.3 6.0 42 148-189 3-48 (359)
179 1cke_A CK, MSSA, protein (cyti 96.4 0.0021 7.1E-08 53.7 3.8 25 165-189 5-29 (227)
180 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0026 8.8E-08 56.7 4.4 109 164-289 170-278 (330)
181 2ze6_A Isopentenyl transferase 96.4 0.0021 7.2E-08 54.9 3.8 24 166-189 2-25 (253)
182 2r6a_A DNAB helicase, replicat 96.4 0.33 1.1E-05 45.0 19.0 92 163-258 201-324 (454)
183 3cm0_A Adenylate kinase; ATP-b 96.4 0.0022 7.4E-08 51.7 3.6 25 165-189 4-28 (186)
184 2jaq_A Deoxyguanosine kinase; 96.4 0.0021 7.2E-08 52.5 3.6 23 167-189 2-24 (205)
185 1z6g_A Guanylate kinase; struc 96.4 0.0019 6.3E-08 53.9 3.3 27 163-189 21-47 (218)
186 1y63_A LMAJ004144AAA protein; 96.4 0.0023 8E-08 51.7 3.8 25 164-188 9-33 (184)
187 3ney_A 55 kDa erythrocyte memb 96.4 0.0023 7.9E-08 52.4 3.7 26 164-189 18-43 (197)
188 3b5x_A Lipid A export ATP-bind 96.4 0.015 5.3E-07 55.8 10.0 27 163-189 367-393 (582)
189 2iyv_A Shikimate kinase, SK; t 96.4 0.0019 6.6E-08 52.0 3.2 24 166-189 3-26 (184)
190 2xxa_A Signal recognition part 96.4 0.021 7.2E-07 52.6 10.5 26 164-189 99-124 (433)
191 3umf_A Adenylate kinase; rossm 96.3 0.0027 9.2E-08 52.9 4.0 27 163-189 27-53 (217)
192 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 8.8E-08 51.8 3.9 25 165-189 12-36 (199)
193 2if2_A Dephospho-COA kinase; a 96.3 0.0023 7.8E-08 52.5 3.5 22 166-187 2-23 (204)
194 3aez_A Pantothenate kinase; tr 96.3 0.0025 8.7E-08 56.2 4.0 43 163-206 88-130 (312)
195 1sq5_A Pantothenate kinase; P- 96.3 0.018 6.2E-07 50.6 9.5 27 163-189 78-104 (308)
196 1s96_A Guanylate kinase, GMP k 96.3 0.0025 8.5E-08 53.2 3.7 27 163-189 14-40 (219)
197 2jeo_A Uridine-cytidine kinase 96.3 0.0027 9.4E-08 53.8 4.0 27 163-189 23-49 (245)
198 1zuh_A Shikimate kinase; alpha 96.3 0.0026 8.8E-08 50.5 3.6 26 164-189 6-31 (168)
199 1jr3_D DNA polymerase III, del 96.3 0.026 8.8E-07 50.3 10.5 135 157-317 10-156 (343)
200 1ukz_A Uridylate kinase; trans 96.3 0.0029 1E-07 51.8 4.0 26 164-189 14-39 (203)
201 2vli_A Antibiotic resistance p 96.3 0.0018 6.1E-08 52.1 2.6 25 165-189 5-29 (183)
202 2qt1_A Nicotinamide riboside k 96.3 0.0028 9.6E-08 52.2 3.9 26 164-189 20-45 (207)
203 3tlx_A Adenylate kinase 2; str 96.3 0.0054 1.9E-07 52.0 5.8 40 150-189 12-53 (243)
204 1uf9_A TT1252 protein; P-loop, 96.3 0.0031 1.1E-07 51.5 4.1 26 163-188 6-31 (203)
205 1qf9_A UMP/CMP kinase, protein 96.2 0.0032 1.1E-07 50.9 4.0 25 165-189 6-30 (194)
206 2wwf_A Thymidilate kinase, put 96.2 0.0032 1.1E-07 51.8 4.0 26 164-189 9-34 (212)
207 1e6c_A Shikimate kinase; phosp 96.2 0.0024 8.4E-08 50.7 3.1 24 166-189 3-26 (173)
208 1aky_A Adenylate kinase; ATP:A 96.2 0.0031 1.1E-07 52.4 3.9 26 164-189 3-28 (220)
209 4e22_A Cytidylate kinase; P-lo 96.2 0.003 1E-07 53.9 3.9 27 163-189 25-51 (252)
210 2cdn_A Adenylate kinase; phosp 96.2 0.0032 1.1E-07 51.5 3.8 26 164-189 19-44 (201)
211 1jjv_A Dephospho-COA kinase; P 96.2 0.0027 9.2E-08 52.2 3.4 22 166-187 3-24 (206)
212 1fx0_B ATP synthase beta chain 96.2 0.023 8E-07 52.7 9.9 99 157-257 156-276 (498)
213 2p5t_B PEZT; postsegregational 96.2 0.0041 1.4E-07 53.0 4.6 26 164-189 31-56 (253)
214 1nn5_A Similar to deoxythymidy 96.2 0.0035 1.2E-07 51.7 4.0 26 164-189 8-33 (215)
215 3a4m_A L-seryl-tRNA(SEC) kinas 96.2 0.0033 1.1E-07 53.9 4.0 25 165-189 4-28 (260)
216 2pcj_A ABC transporter, lipopr 96.2 0.0026 8.8E-08 53.3 3.1 132 164-300 29-212 (224)
217 2ehv_A Hypothetical protein PH 96.2 0.003 1E-07 53.4 3.5 24 164-187 29-52 (251)
218 3tif_A Uncharacterized ABC tra 96.2 0.003 1E-07 53.3 3.5 127 163-290 29-210 (235)
219 1rj9_A FTSY, signal recognitio 96.2 0.0035 1.2E-07 55.0 4.0 26 164-189 101-126 (304)
220 2i3b_A HCR-ntpase, human cance 96.2 0.003 1E-07 51.4 3.3 24 166-189 2-25 (189)
221 2z0h_A DTMP kinase, thymidylat 96.1 0.007 2.4E-07 49.1 5.6 23 167-189 2-24 (197)
222 2iw3_A Elongation factor 3A; a 96.1 0.0085 2.9E-07 60.6 7.1 83 214-300 880-971 (986)
223 1zd8_A GTP:AMP phosphotransfer 96.1 0.0035 1.2E-07 52.5 3.7 26 164-189 6-31 (227)
224 2onk_A Molybdate/tungstate ABC 96.1 0.0033 1.1E-07 53.2 3.5 122 163-290 23-191 (240)
225 2pt5_A Shikimate kinase, SK; a 96.1 0.0036 1.2E-07 49.4 3.6 23 167-189 2-24 (168)
226 3fwy_A Light-independent proto 96.1 0.0054 1.9E-07 54.1 5.0 41 163-206 46-86 (314)
227 2pbr_A DTMP kinase, thymidylat 96.1 0.0036 1.2E-07 50.6 3.6 23 167-189 2-24 (195)
228 3b9q_A Chloroplast SRP recepto 96.1 0.0039 1.3E-07 54.7 4.0 26 164-189 99-124 (302)
229 1m7g_A Adenylylsulfate kinase; 96.1 0.0057 2E-07 50.5 4.8 27 163-189 23-49 (211)
230 1tue_A Replication protein E1; 96.1 0.0053 1.8E-07 50.3 4.4 37 153-189 45-82 (212)
231 2pez_A Bifunctional 3'-phospho 96.1 0.0045 1.5E-07 49.6 4.0 26 164-189 4-29 (179)
232 3cmu_A Protein RECA, recombina 96.1 0.017 5.9E-07 62.4 9.4 88 164-259 382-473 (2050)
233 2q6t_A DNAB replication FORK h 96.1 0.025 8.6E-07 52.4 9.6 51 164-218 199-249 (444)
234 1zak_A Adenylate kinase; ATP:A 96.1 0.0039 1.3E-07 51.9 3.7 26 164-189 4-29 (222)
235 2j37_W Signal recognition part 96.1 0.062 2.1E-06 50.5 12.2 26 164-189 100-125 (504)
236 1xjc_A MOBB protein homolog; s 96.1 0.0043 1.5E-07 49.4 3.7 26 164-189 3-28 (169)
237 3gfo_A Cobalt import ATP-bindi 96.1 0.0046 1.6E-07 53.5 4.2 127 164-291 33-209 (275)
238 3lnc_A Guanylate kinase, GMP k 96.1 0.0024 8.1E-08 53.6 2.3 26 164-189 26-52 (231)
239 2v54_A DTMP kinase, thymidylat 96.1 0.0039 1.3E-07 50.9 3.6 25 165-189 4-28 (204)
240 1b0u_A Histidine permease; ABC 96.0 0.0033 1.1E-07 54.0 3.2 27 163-189 30-56 (262)
241 1zu4_A FTSY; GTPase, signal re 96.0 0.01 3.5E-07 52.5 6.3 26 164-189 104-129 (320)
242 3fb4_A Adenylate kinase; psych 96.0 0.0042 1.4E-07 51.4 3.6 23 167-189 2-24 (216)
243 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0041 1.4E-07 53.0 3.5 25 164-188 28-52 (250)
244 1q57_A DNA primase/helicase; d 96.0 0.033 1.1E-06 52.5 10.1 51 164-218 241-291 (503)
245 2zu0_C Probable ATP-dependent 96.0 0.0044 1.5E-07 53.4 3.7 26 163-188 44-69 (267)
246 2olj_A Amino acid ABC transpor 96.0 0.0037 1.3E-07 53.7 3.2 126 163-291 48-224 (263)
247 3cmw_A Protein RECA, recombina 96.0 0.017 5.8E-07 61.6 8.7 88 164-259 382-473 (1706)
248 1g6h_A High-affinity branched- 96.0 0.0036 1.2E-07 53.6 3.0 26 164-189 32-57 (257)
249 1ji0_A ABC transporter; ATP bi 96.0 0.0036 1.2E-07 53.0 3.0 123 164-289 31-202 (240)
250 2ff7_A Alpha-hemolysin translo 96.0 0.0057 1.9E-07 52.0 4.3 26 164-189 34-59 (247)
251 3k1j_A LON protease, ATP-depen 96.0 0.013 4.4E-07 56.6 7.3 43 145-189 42-84 (604)
252 1gtv_A TMK, thymidylate kinase 96.0 0.0024 8.2E-08 52.7 1.9 23 167-189 2-24 (214)
253 3b85_A Phosphate starvation-in 96.0 0.0034 1.2E-07 51.9 2.8 25 164-188 21-45 (208)
254 1sgw_A Putative ABC transporte 95.9 0.0032 1.1E-07 52.3 2.6 126 164-290 34-197 (214)
255 2ixe_A Antigen peptide transpo 95.9 0.0061 2.1E-07 52.6 4.4 27 163-189 43-69 (271)
256 3dl0_A Adenylate kinase; phosp 95.9 0.0046 1.6E-07 51.2 3.5 23 167-189 2-24 (216)
257 1uj2_A Uridine-cytidine kinase 95.9 0.0054 1.9E-07 52.2 4.0 27 163-189 20-46 (252)
258 1vpl_A ABC transporter, ATP-bi 95.9 0.004 1.4E-07 53.2 3.2 126 163-291 39-211 (256)
259 1mv5_A LMRA, multidrug resista 95.9 0.0043 1.5E-07 52.6 3.3 27 163-189 26-52 (243)
260 4g1u_C Hemin import ATP-bindin 95.9 0.0044 1.5E-07 53.3 3.4 126 164-291 36-213 (266)
261 3nwj_A ATSK2; P loop, shikimat 95.9 0.0046 1.6E-07 52.6 3.4 25 165-189 48-72 (250)
262 2og2_A Putative signal recogni 95.9 0.0056 1.9E-07 55.0 4.1 26 164-189 156-181 (359)
263 4eaq_A DTMP kinase, thymidylat 95.9 0.011 3.7E-07 49.6 5.7 26 164-189 25-50 (229)
264 2grj_A Dephospho-COA kinase; T 95.9 0.0052 1.8E-07 50.1 3.6 26 164-189 11-36 (192)
265 3l0o_A Transcription terminati 95.9 0.025 8.6E-07 50.9 8.1 52 155-207 164-216 (427)
266 3cmw_A Protein RECA, recombina 95.9 0.018 6E-07 61.5 8.2 88 164-259 1430-1521(1706)
267 2ghi_A Transport protein; mult 95.8 0.0047 1.6E-07 53.0 3.2 27 163-189 44-70 (260)
268 2qi9_C Vitamin B12 import ATP- 95.8 0.0045 1.5E-07 52.7 3.0 26 164-189 25-50 (249)
269 3end_A Light-independent proto 95.8 0.0087 3E-07 52.5 5.0 42 163-207 39-80 (307)
270 2yz2_A Putative ABC transporte 95.8 0.0048 1.6E-07 53.1 3.2 125 163-290 31-202 (266)
271 3be4_A Adenylate kinase; malar 95.8 0.0056 1.9E-07 50.8 3.5 25 165-189 5-29 (217)
272 2eyu_A Twitching motility prot 95.8 0.01 3.5E-07 50.9 5.2 27 163-189 23-49 (261)
273 3bgw_A DNAB-like replicative h 95.8 0.031 1E-06 51.8 8.8 41 163-206 195-235 (444)
274 2ihy_A ABC transporter, ATP-bi 95.8 0.0047 1.6E-07 53.5 3.0 26 164-189 46-71 (279)
275 1vht_A Dephospho-COA kinase; s 95.8 0.0066 2.3E-07 50.3 3.8 23 165-187 4-26 (218)
276 2f1r_A Molybdopterin-guanine d 95.8 0.0036 1.2E-07 50.0 2.0 24 166-189 3-26 (171)
277 2nq2_C Hypothetical ABC transp 95.7 0.0049 1.7E-07 52.6 3.0 125 164-290 30-193 (253)
278 2v9p_A Replication protein E1; 95.7 0.0064 2.2E-07 53.3 3.7 27 163-189 124-150 (305)
279 3r20_A Cytidylate kinase; stru 95.7 0.0071 2.4E-07 50.9 3.7 25 165-189 9-33 (233)
280 1p9r_A General secretion pathw 95.7 0.022 7.7E-07 52.2 7.3 29 161-189 163-191 (418)
281 1nlf_A Regulatory protein REPA 95.7 0.012 4E-07 50.9 5.1 120 164-288 29-183 (279)
282 1ak2_A Adenylate kinase isoenz 95.7 0.0077 2.6E-07 50.6 3.9 26 164-189 15-40 (233)
283 1e4v_A Adenylate kinase; trans 95.7 0.0074 2.5E-07 49.9 3.7 23 167-189 2-24 (214)
284 3ake_A Cytidylate kinase; CMP 95.7 0.0072 2.5E-07 49.4 3.6 24 166-189 3-26 (208)
285 1np6_A Molybdopterin-guanine d 95.6 0.0082 2.8E-07 48.1 3.7 25 165-189 6-30 (174)
286 2xb4_A Adenylate kinase; ATP-b 95.6 0.0073 2.5E-07 50.4 3.6 23 167-189 2-24 (223)
287 3p32_A Probable GTPase RV1496/ 95.6 0.026 8.8E-07 50.7 7.3 37 153-189 65-103 (355)
288 2f6r_A COA synthase, bifunctio 95.6 0.0084 2.9E-07 52.0 3.9 23 164-186 74-96 (281)
289 1oix_A RAS-related protein RAB 95.6 0.0079 2.7E-07 48.7 3.5 25 165-189 29-53 (191)
290 3sop_A Neuronal-specific septi 95.6 0.0075 2.6E-07 52.0 3.5 23 167-189 4-26 (270)
291 3fvq_A Fe(3+) IONS import ATP- 95.5 0.0083 2.9E-07 53.8 3.8 127 163-292 28-205 (359)
292 3iqw_A Tail-anchored protein t 95.5 0.023 8E-07 50.5 6.7 46 160-208 11-56 (334)
293 2bbs_A Cystic fibrosis transme 95.5 0.0074 2.5E-07 52.6 3.3 27 163-189 62-88 (290)
294 2qe7_A ATP synthase subunit al 95.5 0.037 1.3E-06 51.5 8.0 90 163-257 160-264 (502)
295 3thx_A DNA mismatch repair pro 95.5 0.03 1E-06 56.6 8.0 22 164-185 661-682 (934)
296 3d3q_A TRNA delta(2)-isopenten 95.5 0.0091 3.1E-07 53.0 3.7 24 166-189 8-31 (340)
297 3cr8_A Sulfate adenylyltranfer 95.5 0.013 4.4E-07 55.8 5.0 26 164-189 368-393 (552)
298 2r9v_A ATP synthase subunit al 95.5 0.032 1.1E-06 52.0 7.4 90 163-257 173-277 (515)
299 3hjn_A DTMP kinase, thymidylat 95.4 0.029 9.8E-07 45.8 6.5 86 167-256 2-90 (197)
300 3lv8_A DTMP kinase, thymidylat 95.4 0.025 8.6E-07 47.6 6.2 38 164-203 26-63 (236)
301 3io3_A DEHA2D07832P; chaperone 95.4 0.02 6.9E-07 51.2 5.9 30 160-189 13-42 (348)
302 3upu_A ATP-dependent DNA helic 95.4 0.02 6.7E-07 53.4 6.0 39 150-189 31-69 (459)
303 4edh_A DTMP kinase, thymidylat 95.4 0.03 1E-06 46.3 6.5 32 165-198 6-37 (213)
304 3a8t_A Adenylate isopentenyltr 95.4 0.0095 3.2E-07 52.8 3.5 26 164-189 39-64 (339)
305 3nh6_A ATP-binding cassette SU 95.4 0.0089 3.1E-07 52.5 3.4 27 163-189 78-104 (306)
306 3crm_A TRNA delta(2)-isopenten 95.4 0.0099 3.4E-07 52.4 3.6 25 165-189 5-29 (323)
307 2f9l_A RAB11B, member RAS onco 95.4 0.0089 3.1E-07 48.6 3.2 24 166-189 6-29 (199)
308 4tmk_A Protein (thymidylate ki 95.4 0.031 1.1E-06 46.3 6.4 53 165-219 3-55 (213)
309 1tq4_A IIGP1, interferon-induc 95.4 0.014 4.8E-07 53.4 4.7 25 164-188 68-92 (413)
310 1z47_A CYSA, putative ABC-tran 95.4 0.0097 3.3E-07 53.3 3.5 126 164-292 40-212 (355)
311 3exa_A TRNA delta(2)-isopenten 95.4 0.011 3.9E-07 51.7 3.8 25 165-189 3-27 (322)
312 1a7j_A Phosphoribulokinase; tr 95.3 0.0061 2.1E-07 53.1 2.2 26 164-189 4-29 (290)
313 2yyz_A Sugar ABC transporter, 95.3 0.01 3.5E-07 53.2 3.7 127 163-292 27-200 (359)
314 2pjz_A Hypothetical protein ST 95.3 0.0077 2.6E-07 51.7 2.8 123 165-291 30-190 (263)
315 1q3t_A Cytidylate kinase; nucl 95.3 0.013 4.3E-07 49.3 4.0 26 164-189 15-40 (236)
316 3kta_A Chromosome segregation 95.3 0.011 3.9E-07 47.2 3.6 25 165-189 26-50 (182)
317 1g8f_A Sulfate adenylyltransfe 95.3 0.018 6.3E-07 54.1 5.4 45 145-189 373-419 (511)
318 2it1_A 362AA long hypothetical 95.3 0.011 3.6E-07 53.2 3.7 128 163-291 27-199 (362)
319 1yrb_A ATP(GTP)binding protein 95.3 0.026 9.1E-07 47.9 6.1 26 164-189 13-38 (262)
320 2vp4_A Deoxynucleoside kinase; 95.3 0.0074 2.5E-07 50.6 2.5 25 164-188 19-43 (230)
321 3rlf_A Maltose/maltodextrin im 95.3 0.011 3.7E-07 53.5 3.7 129 163-292 27-200 (381)
322 1tf7_A KAIC; homohexamer, hexa 95.3 0.063 2.2E-06 50.8 9.1 86 164-255 280-379 (525)
323 1ltq_A Polynucleotide kinase; 95.3 0.011 3.9E-07 51.5 3.7 23 166-188 3-25 (301)
324 4gzl_A RAS-related C3 botulinu 95.3 0.012 4.1E-07 48.1 3.6 37 153-189 18-54 (204)
325 3zvl_A Bifunctional polynucleo 95.2 0.0092 3.2E-07 54.9 3.2 27 163-189 256-282 (416)
326 1v43_A Sugar-binding transport 95.2 0.012 4E-07 53.2 3.7 129 163-292 35-208 (372)
327 2wji_A Ferrous iron transport 95.2 0.011 3.7E-07 46.5 3.1 23 166-188 4-26 (165)
328 1g29_1 MALK, maltose transport 95.2 0.012 3.9E-07 53.2 3.5 126 164-292 28-206 (372)
329 1zj6_A ADP-ribosylation factor 95.2 0.024 8.3E-07 45.3 5.1 35 153-188 5-39 (187)
330 1svm_A Large T antigen; AAA+ f 95.2 0.013 4.5E-07 52.9 3.8 27 163-189 167-193 (377)
331 3f9v_A Minichromosome maintena 95.1 0.0067 2.3E-07 58.4 1.9 46 144-189 295-351 (595)
332 3d31_A Sulfate/molybdate ABC t 95.1 0.0094 3.2E-07 53.3 2.7 122 163-291 24-193 (348)
333 3foz_A TRNA delta(2)-isopenten 95.1 0.015 5.1E-07 50.9 3.7 26 164-189 9-34 (316)
334 1cp2_A CP2, nitrogenase iron p 95.1 0.027 9.3E-07 48.1 5.5 38 166-206 2-39 (269)
335 4dzz_A Plasmid partitioning pr 95.1 0.046 1.6E-06 44.4 6.7 43 166-211 2-45 (206)
336 2ocp_A DGK, deoxyguanosine kin 95.1 0.017 5.7E-07 48.7 4.0 25 165-189 2-26 (241)
337 3vr4_D V-type sodium ATPase su 95.0 0.041 1.4E-06 50.6 6.7 93 164-257 150-258 (465)
338 3ld9_A DTMP kinase, thymidylat 95.0 0.033 1.1E-06 46.4 5.6 27 163-189 19-45 (223)
339 2ck3_A ATP synthase subunit al 95.0 0.085 2.9E-06 49.2 8.8 101 157-257 153-272 (510)
340 1nij_A Hypothetical protein YJ 95.0 0.012 4.1E-07 52.0 3.0 26 164-189 3-28 (318)
341 3oaa_A ATP synthase subunit al 95.0 0.13 4.5E-06 47.8 9.9 89 163-257 160-264 (513)
342 2zej_A Dardarin, leucine-rich 95.0 0.012 4.2E-07 47.1 2.8 22 167-188 4-25 (184)
343 2dyk_A GTP-binding protein; GT 95.0 0.016 5.6E-07 44.8 3.5 24 166-189 2-25 (161)
344 3gd7_A Fusion complex of cysti 95.0 0.016 5.5E-07 52.6 3.8 26 163-188 45-70 (390)
345 1fx0_A ATP synthase alpha chai 95.0 0.042 1.4E-06 51.2 6.6 87 164-257 162-265 (507)
346 1oxx_K GLCV, glucose, ABC tran 94.9 0.0089 3E-07 53.6 2.0 129 163-292 29-207 (353)
347 3gqb_B V-type ATP synthase bet 94.9 0.029 9.9E-07 51.6 5.4 93 164-257 146-261 (464)
348 2www_A Methylmalonic aciduria 94.9 0.033 1.1E-06 49.9 5.7 26 164-189 73-98 (349)
349 2c61_A A-type ATP synthase non 94.9 0.04 1.4E-06 50.9 6.3 93 164-257 151-259 (469)
350 2wjg_A FEOB, ferrous iron tran 94.9 0.016 5.3E-07 46.4 3.3 23 166-188 8-30 (188)
351 2obl_A ESCN; ATPase, hydrolase 94.9 0.017 5.9E-07 51.6 3.8 27 163-189 69-95 (347)
352 2ce2_X GTPase HRAS; signaling 94.9 0.015 5.2E-07 45.0 3.1 23 167-189 5-27 (166)
353 2yv5_A YJEQ protein; hydrolase 94.9 0.024 8.3E-07 49.6 4.7 33 153-189 156-188 (302)
354 4f4c_A Multidrug resistance pr 94.9 0.062 2.1E-06 56.7 8.5 27 163-189 442-468 (1321)
355 2ewv_A Twitching motility prot 94.9 0.025 8.4E-07 51.1 4.8 112 163-287 134-245 (372)
356 1moz_A ARL1, ADP-ribosylation 94.9 0.018 6E-07 45.8 3.5 33 155-187 7-40 (183)
357 2qmh_A HPR kinase/phosphorylas 94.9 0.017 5.7E-07 47.1 3.3 26 164-189 33-58 (205)
358 2qm8_A GTPase/ATPase; G protei 94.9 0.019 6.6E-07 51.1 4.0 27 163-189 53-79 (337)
359 1lw7_A Transcriptional regulat 94.8 0.017 5.8E-07 52.0 3.5 25 165-189 170-194 (365)
360 1fzq_A ADP-ribosylation factor 94.8 0.025 8.5E-07 45.2 4.1 25 164-188 15-39 (181)
361 2r8r_A Sensor protein; KDPD, P 94.7 0.033 1.1E-06 46.4 4.8 38 166-206 7-44 (228)
362 1u0j_A DNA replication protein 94.7 0.038 1.3E-06 47.3 5.3 36 154-189 91-128 (267)
363 1z2a_A RAS-related protein RAB 94.7 0.018 6.3E-07 44.8 3.2 24 166-189 6-29 (168)
364 2fz4_A DNA repair protein RAD2 94.7 0.45 1.5E-05 39.7 12.0 22 168-189 111-132 (237)
365 3kjh_A CO dehydrogenase/acetyl 94.7 0.036 1.2E-06 46.6 5.2 40 168-210 3-42 (254)
366 3eph_A TRNA isopentenyltransfe 94.7 0.023 7.9E-07 51.6 4.1 25 165-189 2-26 (409)
367 2e87_A Hypothetical protein PH 94.7 0.83 2.8E-05 40.7 14.4 26 164-189 166-191 (357)
368 2afh_E Nitrogenase iron protei 94.7 0.03 1E-06 48.5 4.8 39 165-206 2-40 (289)
369 2npi_A Protein CLP1; CLP1-PCF1 94.7 0.018 6.1E-07 53.6 3.3 27 163-189 136-162 (460)
370 2ged_A SR-beta, signal recogni 94.6 0.023 7.9E-07 45.6 3.7 26 164-189 47-72 (193)
371 2gj8_A MNME, tRNA modification 94.6 0.023 7.8E-07 45.0 3.6 25 165-189 4-28 (172)
372 2lkc_A Translation initiation 94.6 0.024 8.1E-07 44.8 3.6 26 164-189 7-32 (178)
373 1u8z_A RAS-related protein RAL 94.6 0.02 6.7E-07 44.6 3.0 24 166-189 5-28 (168)
374 3v9p_A DTMP kinase, thymidylat 94.6 0.031 1.1E-06 46.7 4.3 26 164-189 24-49 (227)
375 2h92_A Cytidylate kinase; ross 94.5 0.021 7.3E-07 47.1 3.3 24 166-189 4-27 (219)
376 1f6b_A SAR1; gtpases, N-termin 94.5 0.035 1.2E-06 45.1 4.5 25 163-187 23-47 (198)
377 2gza_A Type IV secretion syste 94.5 0.018 6.3E-07 51.8 3.1 26 164-189 174-199 (361)
378 3con_A GTPase NRAS; structural 94.5 0.02 6.8E-07 45.9 3.0 24 166-189 22-45 (190)
379 2nzj_A GTP-binding protein REM 94.5 0.019 6.4E-07 45.2 2.8 25 165-189 4-28 (175)
380 1pui_A ENGB, probable GTP-bind 94.5 0.015 5E-07 47.6 2.2 26 163-188 24-49 (210)
381 1r8s_A ADP-ribosylation factor 94.5 0.024 8.1E-07 44.1 3.3 22 168-189 3-24 (164)
382 1z08_A RAS-related protein RAB 94.5 0.021 7.2E-07 44.6 3.0 24 166-189 7-30 (170)
383 1c1y_A RAS-related protein RAP 94.5 0.023 7.9E-07 44.2 3.2 23 167-189 5-27 (167)
384 2zts_A Putative uncharacterize 94.5 0.025 8.4E-07 47.6 3.6 50 164-217 29-78 (251)
385 1kao_A RAP2A; GTP-binding prot 94.5 0.023 7.9E-07 44.1 3.2 24 166-189 4-27 (167)
386 1m7b_A RND3/RHOE small GTP-bin 94.5 0.022 7.5E-07 45.5 3.1 25 165-189 7-31 (184)
387 1ek0_A Protein (GTP-binding pr 94.4 0.022 7.5E-07 44.4 3.0 23 167-189 5-27 (170)
388 1z0j_A RAB-22, RAS-related pro 94.4 0.022 7.5E-07 44.5 3.0 24 166-189 7-30 (170)
389 3gmt_A Adenylate kinase; ssgci 94.4 0.025 8.4E-07 47.3 3.4 25 165-189 8-32 (230)
390 2axn_A 6-phosphofructo-2-kinas 94.4 0.028 9.6E-07 53.2 4.2 27 163-189 33-59 (520)
391 2gks_A Bifunctional SAT/APS ki 94.4 0.051 1.7E-06 51.7 6.0 44 146-189 351-396 (546)
392 3ihw_A Centg3; RAS, centaurin, 94.4 0.022 7.5E-07 45.7 3.0 25 165-189 20-44 (184)
393 1f2t_A RAD50 ABC-ATPase; DNA d 94.4 0.031 1.1E-06 43.4 3.7 25 165-189 23-47 (149)
394 2v3c_C SRP54, signal recogniti 94.4 0.018 6.1E-07 53.1 2.7 25 165-189 99-123 (432)
395 3q72_A GTP-binding protein RAD 94.4 0.023 7.7E-07 44.3 3.0 22 167-188 4-25 (166)
396 1svi_A GTP-binding protein YSX 94.4 0.026 8.9E-07 45.4 3.4 25 164-188 22-46 (195)
397 2erx_A GTP-binding protein DI- 94.4 0.022 7.7E-07 44.5 3.0 24 166-189 4-27 (172)
398 2fn4_A P23, RAS-related protei 94.4 0.024 8.2E-07 44.8 3.1 25 165-189 9-33 (181)
399 1nrj_B SR-beta, signal recogni 94.4 0.029 9.8E-07 46.2 3.7 26 164-189 11-36 (218)
400 1u0l_A Probable GTPase ENGC; p 94.4 0.039 1.3E-06 48.3 4.7 34 153-189 160-193 (301)
401 1ky3_A GTP-binding protein YPT 94.4 0.023 8E-07 44.9 3.0 26 164-189 7-32 (182)
402 1g16_A RAS-related protein SEC 94.3 0.024 8.3E-07 44.2 3.1 24 166-189 4-27 (170)
403 3q85_A GTP-binding protein REM 94.3 0.022 7.5E-07 44.6 2.8 21 167-187 4-24 (169)
404 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.024 8.1E-07 44.7 3.0 24 166-189 8-31 (177)
405 2hxs_A RAB-26, RAS-related pro 94.3 0.026 8.8E-07 44.6 3.2 24 166-189 7-30 (178)
406 2qnr_A Septin-2, protein NEDD5 94.3 0.022 7.4E-07 49.9 2.9 22 167-188 20-41 (301)
407 3llm_A ATP-dependent RNA helic 94.3 0.3 1E-05 40.7 10.0 32 153-186 66-97 (235)
408 1m8p_A Sulfate adenylyltransfe 94.3 0.042 1.4E-06 52.6 5.1 26 164-189 395-420 (573)
409 3ozx_A RNAse L inhibitor; ATP 94.3 0.023 7.9E-07 53.9 3.3 125 164-292 24-203 (538)
410 1p5z_B DCK, deoxycytidine kina 94.3 0.015 5.1E-07 49.8 1.8 26 164-189 23-48 (263)
411 3pqc_A Probable GTP-binding pr 94.3 0.029 1E-06 44.9 3.5 26 164-189 22-47 (195)
412 3t1o_A Gliding protein MGLA; G 94.3 0.025 8.6E-07 45.4 3.1 24 166-189 15-38 (198)
413 1m2o_B GTP-binding protein SAR 94.3 0.028 9.4E-07 45.3 3.3 26 164-189 22-47 (190)
414 3fdi_A Uncharacterized protein 94.2 0.037 1.3E-06 45.3 4.1 25 165-189 6-30 (201)
415 3c5c_A RAS-like protein 12; GD 94.2 0.026 8.8E-07 45.3 3.0 25 165-189 21-45 (187)
416 1r2q_A RAS-related protein RAB 94.2 0.028 9.7E-07 43.8 3.2 24 166-189 7-30 (170)
417 2qag_B Septin-6, protein NEDD5 94.2 0.024 8.1E-07 52.0 3.0 25 164-188 39-65 (427)
418 1yqt_A RNAse L inhibitor; ATP- 94.2 0.028 9.6E-07 53.4 3.6 125 164-291 46-223 (538)
419 2cjw_A GTP-binding protein GEM 94.2 0.03 1E-06 45.3 3.3 23 166-188 7-29 (192)
420 2woj_A ATPase GET3; tail-ancho 94.2 0.083 2.9E-06 47.3 6.5 27 163-189 16-42 (354)
421 4akg_A Glutathione S-transfera 94.2 0.14 4.8E-06 57.3 9.4 80 165-257 1267-1346(2695)
422 2dpy_A FLII, flagellum-specifi 94.2 0.031 1.1E-06 51.6 3.8 27 163-189 155-181 (438)
423 2p67_A LAO/AO transport system 94.1 0.038 1.3E-06 49.2 4.2 27 163-189 54-80 (341)
424 1z0f_A RAB14, member RAS oncog 94.1 0.028 9.5E-07 44.3 3.0 25 165-189 15-39 (179)
425 2bme_A RAB4A, RAS-related prot 94.1 0.029 9.8E-07 44.7 3.1 25 165-189 10-34 (186)
426 4dsu_A GTPase KRAS, isoform 2B 94.1 0.028 9.4E-07 44.8 3.0 24 166-189 5-28 (189)
427 2rcn_A Probable GTPase ENGC; Y 94.1 0.031 1.1E-06 50.1 3.5 25 165-189 215-239 (358)
428 2y8e_A RAB-protein 6, GH09086P 94.1 0.03 1E-06 44.1 3.1 24 166-189 15-38 (179)
429 2cxx_A Probable GTP-binding pr 94.1 0.027 9.2E-07 45.0 2.9 23 167-189 3-25 (190)
430 3kkq_A RAS-related protein M-R 94.1 0.029 9.8E-07 44.6 3.0 25 165-189 18-42 (183)
431 2woo_A ATPase GET3; tail-ancho 94.1 0.077 2.6E-06 47.0 6.0 27 163-189 17-43 (329)
432 3dz8_A RAS-related protein RAB 94.1 0.034 1.1E-06 44.7 3.4 25 165-189 23-47 (191)
433 3t5g_A GTP-binding protein RHE 94.0 0.03 1E-06 44.3 3.1 25 165-189 6-30 (181)
434 2atv_A RERG, RAS-like estrogen 94.0 0.037 1.3E-06 44.7 3.7 26 164-189 27-52 (196)
435 1yqt_A RNAse L inhibitor; ATP- 94.0 0.03 1E-06 53.2 3.5 128 164-292 311-468 (538)
436 3ug7_A Arsenical pump-driving 94.0 0.088 3E-06 47.0 6.4 26 164-189 25-50 (349)
437 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.03 1E-06 44.5 3.0 24 166-189 6-29 (186)
438 3cwq_A Para family chromosome 94.0 0.077 2.6E-06 43.6 5.6 42 167-212 2-44 (209)
439 3bc1_A RAS-related protein RAB 94.0 0.032 1.1E-06 44.6 3.2 25 165-189 11-35 (195)
440 1upt_A ARL1, ADP-ribosylation 94.0 0.04 1.4E-06 43.0 3.7 25 165-189 7-31 (171)
441 2oil_A CATX-8, RAS-related pro 94.0 0.032 1.1E-06 44.8 3.2 25 165-189 25-49 (193)
442 1bif_A 6-phosphofructo-2-kinas 94.0 0.038 1.3E-06 51.6 4.0 26 164-189 38-63 (469)
443 2iwr_A Centaurin gamma 1; ANK 94.0 0.022 7.5E-07 45.1 2.1 24 166-189 8-31 (178)
444 2a9k_A RAS-related protein RAL 93.9 0.031 1.1E-06 44.3 3.0 25 165-189 18-42 (187)
445 2b6h_A ADP-ribosylation factor 93.9 0.028 9.7E-07 45.3 2.8 25 163-187 27-51 (192)
446 3bwd_D RAC-like GTP-binding pr 93.9 0.032 1.1E-06 44.2 3.0 25 165-189 8-32 (182)
447 3tmk_A Thymidylate kinase; pho 93.9 0.11 3.9E-06 42.9 6.4 26 164-189 4-29 (216)
448 2efe_B Small GTP-binding prote 93.9 0.031 1.1E-06 44.2 3.0 24 166-189 13-36 (181)
449 1ksh_A ARF-like protein 2; sma 93.9 0.03 1E-06 44.6 2.9 27 163-189 16-42 (186)
450 3b60_A Lipid A export ATP-bind 93.9 0.049 1.7E-06 52.3 4.8 27 163-189 367-393 (582)
451 3cbq_A GTP-binding protein REM 93.9 0.025 8.6E-07 45.8 2.4 24 164-187 22-45 (195)
452 4hlc_A DTMP kinase, thymidylat 93.9 0.079 2.7E-06 43.4 5.4 24 166-189 3-26 (205)
453 3ozx_A RNAse L inhibitor; ATP 93.9 0.028 9.7E-07 53.3 3.0 127 164-292 293-452 (538)
454 2bov_A RAla, RAS-related prote 93.9 0.032 1.1E-06 45.2 3.0 25 165-189 14-38 (206)
455 2g6b_A RAS-related protein RAB 93.9 0.033 1.1E-06 44.0 3.0 25 165-189 10-34 (180)
456 3vr4_A V-type sodium ATPase ca 93.9 0.19 6.6E-06 47.4 8.5 55 157-216 223-279 (600)
457 3bk7_A ABC transporter ATP-bin 93.9 0.034 1.2E-06 53.6 3.5 127 164-292 381-538 (607)
458 3tw8_B RAS-related protein RAB 93.8 0.032 1.1E-06 44.0 2.9 25 165-189 9-33 (181)
459 1gwn_A RHO-related GTP-binding 93.8 0.034 1.2E-06 45.5 3.1 26 164-189 27-52 (205)
460 3oes_A GTPase rhebl1; small GT 93.8 0.037 1.3E-06 44.9 3.3 26 164-189 23-48 (201)
461 2ew1_A RAS-related protein RAB 93.8 0.037 1.3E-06 45.1 3.3 25 165-189 26-50 (201)
462 1vg8_A RAS-related protein RAB 93.8 0.033 1.1E-06 45.2 3.0 25 165-189 8-32 (207)
463 1ega_A Protein (GTP-binding pr 93.8 0.035 1.2E-06 48.6 3.3 26 164-189 7-32 (301)
464 2fg5_A RAB-22B, RAS-related pr 93.8 0.035 1.2E-06 44.7 3.1 25 165-189 23-47 (192)
465 3euj_A Chromosome partition pr 93.8 0.035 1.2E-06 51.7 3.4 24 166-189 30-53 (483)
466 3llu_A RAS-related GTP-binding 93.8 0.03 1E-06 45.3 2.6 26 164-189 19-44 (196)
467 3clv_A RAB5 protein, putative; 93.8 0.035 1.2E-06 44.7 3.0 25 165-189 7-31 (208)
468 3reg_A RHO-like small GTPase; 93.7 0.036 1.2E-06 44.6 3.0 25 165-189 23-47 (194)
469 3mfy_A V-type ATP synthase alp 93.7 0.29 1E-05 46.1 9.3 56 157-217 218-275 (588)
470 2gf9_A RAS-related protein RAB 93.7 0.037 1.3E-06 44.3 3.0 25 165-189 22-46 (189)
471 3ch4_B Pmkase, phosphomevalona 93.7 0.064 2.2E-06 43.8 4.4 27 163-189 9-35 (202)
472 2gf0_A GTP-binding protein DI- 93.7 0.041 1.4E-06 44.3 3.3 26 164-189 7-32 (199)
473 3tkl_A RAS-related protein RAB 93.7 0.037 1.3E-06 44.4 3.0 24 166-189 17-40 (196)
474 2fh5_B SR-beta, signal recogni 93.7 0.037 1.3E-06 45.3 3.0 26 164-189 6-31 (214)
475 1zd9_A ADP-ribosylation factor 93.7 0.04 1.4E-06 44.1 3.2 25 165-189 22-46 (188)
476 3tqf_A HPR(Ser) kinase; transf 93.7 0.056 1.9E-06 42.9 3.8 25 164-188 15-39 (181)
477 3fkq_A NTRC-like two-domain pr 93.6 0.053 1.8E-06 48.9 4.3 39 164-205 142-181 (373)
478 2o52_A RAS-related protein RAB 93.6 0.037 1.3E-06 44.9 2.9 25 165-189 25-49 (200)
479 2a5j_A RAS-related protein RAB 93.6 0.039 1.3E-06 44.3 3.0 24 166-189 22-45 (191)
480 3k53_A Ferrous iron transport 93.6 0.046 1.6E-06 46.9 3.6 25 165-189 3-27 (271)
481 1z06_A RAS-related protein RAB 93.6 0.04 1.4E-06 44.1 3.0 25 165-189 20-44 (189)
482 1zbd_A Rabphilin-3A; G protein 93.6 0.039 1.3E-06 44.7 3.0 24 166-189 9-32 (203)
483 3lxx_A GTPase IMAP family memb 93.6 0.038 1.3E-06 46.3 3.0 26 164-189 28-53 (239)
484 3j16_B RLI1P; ribosome recycli 93.5 0.041 1.4E-06 53.0 3.5 126 166-292 379-534 (608)
485 1x3s_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.1 3.0 24 166-189 16-39 (195)
486 2bcg_Y Protein YP2, GTP-bindin 93.5 0.041 1.4E-06 44.7 3.1 24 166-189 9-32 (206)
487 2h17_A ADP-ribosylation factor 93.5 0.038 1.3E-06 43.9 2.8 25 165-189 21-45 (181)
488 2q3h_A RAS homolog gene family 93.5 0.038 1.3E-06 44.7 2.8 26 164-189 19-44 (201)
489 3bk7_A ABC transporter ATP-bin 93.5 0.042 1.4E-06 52.9 3.5 126 164-292 116-294 (607)
490 2p5s_A RAS and EF-hand domain 93.5 0.04 1.4E-06 44.6 2.9 26 164-189 27-52 (199)
491 1x6v_B Bifunctional 3'-phospho 93.5 0.051 1.8E-06 52.3 4.0 26 164-189 51-76 (630)
492 3zq6_A Putative arsenical pump 93.5 0.096 3.3E-06 46.2 5.6 25 165-189 14-38 (324)
493 2g3y_A GTP-binding protein GEM 93.5 0.043 1.5E-06 45.3 3.1 23 165-187 37-59 (211)
494 4dkx_A RAS-related protein RAB 93.4 0.043 1.5E-06 45.5 3.0 23 167-189 15-37 (216)
495 4b3f_X DNA-binding protein smu 93.4 0.088 3E-06 51.2 5.7 62 151-218 193-254 (646)
496 1mky_A Probable GTP-binding pr 93.4 0.08 2.8E-06 48.9 5.1 43 147-189 151-204 (439)
497 3q3j_B RHO-related GTP-binding 93.4 0.053 1.8E-06 44.6 3.5 25 165-189 27-51 (214)
498 2j1l_A RHO-related GTP-binding 93.4 0.042 1.4E-06 45.2 2.9 25 165-189 34-58 (214)
499 2orv_A Thymidine kinase; TP4A 93.4 0.082 2.8E-06 44.1 4.6 107 164-285 18-125 (234)
500 2qu8_A Putative nucleolar GTP- 93.4 0.048 1.6E-06 45.3 3.3 26 164-189 28-53 (228)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=9.6e-30 Score=245.27 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=149.1
Q ss_pred ccchhhHHHHHHHHhcC---CCeEEEEEecCCCcHHHHHHHHHH--hhccCCCCCcEEEEEEecCcc--CHHHHHHHHHH
Q 045709 147 VGLQLTFDRVWRCLMEE---HAGIVGLYGMGGVGKTTLLTQINN--RFFDTPNHFDFVIWVVVSRDL--QLEKIQESIAK 219 (337)
Q Consensus 147 vGr~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~ 219 (337)
|||+.++++|.++|... ..++|+|+||||+||||||+.+|+ +. +...+|+.++|++++..+ ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 579999999999999999999998 33 457899999999999875 78999999999
Q ss_pred HhCCCCc-----cccCCCHHHHHHHHHHHhcCC-cEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHhhcc
Q 045709 220 KIGLFNE-----SWKNKSMQEKAQEIFKILSKK-KFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCGQME 293 (337)
Q Consensus 220 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~~~~ 293 (337)
+++.... .....+...+...+++.|.++ ||||||||||+..++ .+ +. .+| |+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~-~~g-s~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQ-ELR-LRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HH-HTT-CEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cc-cCC-CEEEEEcCCHHHHHHcC
Confidence 9986521 112334567788999999996 999999999997654 22 11 157 99999999999998775
Q ss_pred -CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHHhhcC
Q 045709 294 -AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAETLAKD 337 (337)
Q Consensus 294 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~k 337 (337)
...+|+|++|+.++||+||.+++|... .++++.+++++|+++
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~ 325 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIEL 325 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHH
Confidence 336799999999999999999998754 257888999999864
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1e-23 Score=221.21 Aligned_cols=185 Identities=20% Similarity=0.295 Sum_probs=142.2
Q ss_pred CCCCCccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC-CCcEEEEEEecCcc--CHHHHH
Q 045709 140 RPLPPTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-HFDFVIWVVVSRDL--QLEKIQ 214 (337)
Q Consensus 140 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~--~~~~~~ 214 (337)
|+.++.||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .++.++|++++... .....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34456799999999999999963 56789999999999999999999987522234 45688899998853 344556
Q ss_pred HHHHHHhCCCCcc--ccCCCHHHHHHHHHHHhcCC--cEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 215 ESIAKKIGLFNES--WKNKSMQEKAQEIFKILSKK--KFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 215 ~~i~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
..++..+...... ....+.+.+...++..+.++ ||||||||+|+..+|..+ .+| |+||||||++.++.
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~-~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQ-CQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSS-CEEEEEESSTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCC-CEEEEEcCCHHHHH
Confidence 7777777654321 13456788888999999877 999999999998777664 356 99999999999985
Q ss_pred h-ccCCceeecCC-CCHHHHHHHHhHhhCCCCCCCCCChHHHHHHhhc
Q 045709 291 Q-MEAHRSFKVEC-LRYDDAWKLFEQKVGADTLDSHPDIPELAETLAK 336 (337)
Q Consensus 291 ~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~i~~ 336 (337)
. .+....+.+++ |++++|++||...++... +.+.+++++|++
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~ 315 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIK 315 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHH
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHH
Confidence 4 44567889996 999999999999996543 334455666654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=1.5e-24 Score=215.03 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=128.7
Q ss_pred CccccchhhHHHHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcE-EEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF-VIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
+..|||+.++++|.++|.. +..++|+|+||||+||||||+.++++. ++..+|+. ++|++++..++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999976 467899999999999999999999865 34678886 99999999988888888887754
Q ss_pred CCCCcc----cc-----CCCHHHHHHHHHHHh---cCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 222 GLFNES----WK-----NKSMQEKAQEIFKIL---SKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 222 ~~~~~~----~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
+..... .. ..+.+.....++..| .++++||||||+|+...|+.+. +| |+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pG-SRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LS-CKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SS-CCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CC-eEEEEeccChHHH
Confidence 321100 00 112344566677665 6899999999999988887652 56 9999999999988
Q ss_pred hhccCCceeecC------CCCHHHHHHHHhHhhC
Q 045709 290 GQMEAHRSFKVE------CLRYDDAWKLFEQKVG 317 (337)
Q Consensus 290 ~~~~~~~~~~l~------~L~~~ea~~Lf~~~~~ 317 (337)
..+.....|.++ +|+.+|||+||+++..
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 654433456666 9999999999999954
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=195.43 Aligned_cols=168 Identities=18% Similarity=0.297 Sum_probs=125.5
Q ss_pred CCCCccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhhccC-CCCC-cEEEEEEecCccCHHHHHHH
Q 045709 141 PLPPTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHF-DFVIWVVVSRDLQLEKIQES 216 (337)
Q Consensus 141 ~~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~ 216 (337)
+.++.||||+.+++.|.++|.. ++.++|+|+|+||+||||||..++++. .. ..+| +.++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3456799999999999999974 467899999999999999999999865 22 4567 48999999875 33333333
Q ss_pred ---HHHHhCCCC--ccccCCCHHHHHHHHHHHhcC--CcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 217 ---IAKKIGLFN--ESWKNKSMQEKAQEIFKILSK--KKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 217 ---i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
++..++... ......+.......+...+.+ +++||||||+|+...+..+ .++ ++||||||+..++
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~-~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQ-CQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSS-CEEEEEESCGGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCC-CeEEEECCCcHHH
Confidence 344554211 112345667778888888876 7899999999987655443 346 9999999999987
Q ss_pred hhccCCceeec---CCCCHHHHHHHHhHhhCCC
Q 045709 290 GQMEAHRSFKV---ECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 290 ~~~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~ 319 (337)
..+. ...+.+ ++|+.+|+++||...++..
T Consensus 271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~ 302 (591)
T 1z6t_A 271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK 302 (591)
T ss_dssp TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC
T ss_pred HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC
Confidence 6553 334444 5899999999999999764
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=2.1e-16 Score=119.18 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=71.2
Q ss_pred cchhhHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHH
Q 045709 9 FTCDDTISRCLDCTVRKAGYVCNLQDNIRALKEEVRRLTEVRNDVKIRIIVAEQQQ-MKPLEQVHGWISRVQEVGSKVEK 87 (337)
Q Consensus 9 ~~~~~~~~kl~~~l~~~~~~~~~~~~~~~~l~~el~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~l~~~a~~~ed 87 (337)
|+++++++||.+++.+|+.++.+++++++.|+++|++|+++|.+ |+.+. ...++.++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999 66652 23578999999999999999999
Q ss_pred HHhhcC
Q 045709 88 LKEEEY 93 (337)
Q Consensus 88 ~ld~~~ 93 (337)
++|+|.
T Consensus 74 ~iD~f~ 79 (115)
T 3qfl_A 74 VVDKFL 79 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=2.7e-14 Score=132.40 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=116.4
Q ss_pred CCccccchhhHHHHHHHH-hc------CCCeEEEE--EecCCCcHHHHHHHHHHhhccC--CCCC-cEEEEEEecCccCH
Q 045709 143 PPTVVGLQLTFDRVWRCL-ME------EHAGIVGL--YGMGGVGKTTLLTQINNRFFDT--PNHF-DFVIWVVVSRDLQL 210 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~~~~~~~ 210 (337)
+..|+||+.+++.|.+++ .. .....+.| +|++|+|||||++.+++..... ...+ ..++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999888 42 24567777 9999999999999999876210 0012 24678887777788
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccc--------cccccCCC---CCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVD--------LDQVGLPI---PSRT--SV 275 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--------~~~l~~~l---~~~~--~g 275 (337)
..++..++..++...+. ...+.......+...+. +++++|||||++.... +..+...+ +... ..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 89999999998764321 23345566667776664 6799999999986421 22221111 1111 33
Q ss_pred CcEEEEeeCChhHHhhc--------c-CCceeecCCCCHHHHHHHHhHhh
Q 045709 276 SNKVVFTTREFGVCGQM--------E-AHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~~--------~-~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+|+||+...+...+ . ....+.+++|+.++++++|..++
T Consensus 180 -v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 180 -IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp -EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred -EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 5688888765532111 1 12238999999999999998664
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=1.9e-13 Score=125.57 Aligned_cols=171 Identities=13% Similarity=0.048 Sum_probs=118.8
Q ss_pred CccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccC----CCC-CcEEEEEEecCcc-CHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDT----PNH-FDFVIWVVVSRDL-QLEKI 213 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~ 213 (337)
..++||+.+++.+..++.. ...+.+.|+|++|+|||+||+.+++..... ... ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999877753 346789999999999999999999876211 011 3467888887766 88888
Q ss_pred HHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc---ccc-ccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 214 QESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD---LDQ-VGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
+..++..+..........+.......+...+..++.+|||||++.... .+. + ..+.....+ ..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l-~~l~~~~~~-~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVL-YQLLRSDAN-ISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHH-HHHHTSSSC-EEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeH-HHHhcCCcc-eEEEEEECCCchH
Confidence 888888883322222344456677788888877777999999986422 122 1 111111145 7899998865321
Q ss_pred ----hhc--cCCceeecCCCCHHHHHHHHhHhh
Q 045709 290 ----GQM--EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 290 ----~~~--~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+ .....+.+++++.++..++|..++
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 111 112389999999999999999985
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=1.5e-13 Score=126.02 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
+..|+||+.+++.+.+++.. .....+.|+|++|+|||||++.+++........-...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999998863 45678999999999999999999987721111023577888777777778888888
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCcc------ccccccCCCCC-CCCCCcEEEEeeCChhHH
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELV------DLDQVGLPIPS-RTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~-~~~g~s~IiiTtr~~~v~ 289 (337)
..++...+. ...+.......+...+. +++.+||||+++... .+..+...+.. ...+ ..+|+||+.....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~-~~~I~~~~~~~~~ 176 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK-ISFIGITNDVKFV 176 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC---EEEEEEESCGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe-EEEEEEECCCChH
Confidence 777654321 23345666666666664 458999999997642 12222111111 1234 6778888876543
Q ss_pred hhcc-------CCceeecCCCCHHHHHHHHhHhh
Q 045709 290 GQME-------AHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 290 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..+. ....+.+++++.++..++|...+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 2221 11479999999999999999865
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.46 E-value=3.6e-13 Score=121.86 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=109.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc------CHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL------QLEKIQES 216 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~ 216 (337)
++.|+||+.+++.|.+++... +++.|+|++|+|||||++.+++.. . .+|+++.... +...++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 457999999999999988754 799999999999999999998765 1 6788765432 55666666
Q ss_pred HHHHhCCC----------------CccccCCCHHHHHHHHHHHhcC-CcEEEEEecCCCccc---------cccccCCCC
Q 045709 217 IAKKIGLF----------------NESWKNKSMQEKAQEIFKILSK-KKFVLLLDDIWELVD---------LDQVGLPIP 270 (337)
Q Consensus 217 i~~~l~~~----------------~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~l~ 270 (337)
+...+... .......+..+....+...... ++++|||||++.... +..+....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~- 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY- 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-
Confidence 66655320 0000123455666666665543 489999999987543 11121111
Q ss_pred CCCCCCcEEEEeeCChhHHhh----------c-cC-CceeecCCCCHHHHHHHHhHhh
Q 045709 271 SRTSVSNKVVFTTREFGVCGQ----------M-EA-HRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
....+ .++|+|++....... + +. ...+++.||+.+|+.+++...+
T Consensus 160 ~~~~~-~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 160 DSLPN-LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp HHCTT-EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HhcCC-eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 11135 799999987653211 1 11 2478999999999999998765
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=1.3e-12 Score=119.92 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=118.0
Q ss_pred CccccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCC---CCCcEEEEEEecCccCHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIWVVVSRDLQLEKIQES 216 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 216 (337)
+.++||+.+++.+..++.. ...+.+.|+|++|+||||||+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998843 4567899999999999999999998762100 11235678888888888899999
Q ss_pred HHHHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCcccc----ccc---cCCCCCC--CCCCcEEEEeeCC
Q 045709 217 IAKKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVDL----DQV---GLPIPSR--TSVSNKVVFTTRE 285 (337)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~----~~l---~~~l~~~--~~g~s~IiiTtr~ 285 (337)
++..++...+ ....+.......+...+. +++.+|+|||++..... +.+ ....... ..+ ..+|.||+.
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~-~~~I~~t~~ 176 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVW-VSLVGITNS 176 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC------CEEEEECSC
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCce-EEEEEEECC
Confidence 9999976432 134456666777777773 46889999999865321 212 1111111 234 678888876
Q ss_pred hhH--------HhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 286 FGV--------CGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 286 ~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
... ...+ ....+.+++++.++..++|...+
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHH
Confidence 532 2211 11478999999999999999885
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.3e-12 Score=118.47 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=102.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-----cCHHHHHHHH
Q 045709 143 PPTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-----LQLEKIQESI 217 (337)
Q Consensus 143 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i 217 (337)
++.|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+.. ... .+|+++... .+...++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NLP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TCC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CCC---EEEEEchhhccccCCCHHHHHHHH
Confidence 3579999999999999 754 699999999999999999999887 222 578887643 3444444444
Q ss_pred HHHhCC------------------CCc----cc-----cCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc-----ccccc
Q 045709 218 AKKIGL------------------FNE----SW-----KNKSMQEKAQEIFKILSKKKFVLLLDDIWELV-----DLDQV 265 (337)
Q Consensus 218 ~~~l~~------------------~~~----~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l 265 (337)
...+.. ..+ .. ...........+.+... ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 443310 000 00 01234444444443322 49999999997642 22222
Q ss_pred cCCCCCCCCCCcEEEEeeCChhHHhh----------c-cC-CceeecCCCCHHHHHHHHhHhh
Q 045709 266 GLPIPSRTSVSNKVVFTTREFGVCGQ----------M-EA-HRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 266 ~~~l~~~~~g~s~IiiTtr~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
...+.....+ .++|+|++....... + +. ...+.+.+|+.+|+.+++...+
T Consensus 161 l~~~~~~~~~-~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 161 LAYAYDNLKR-IKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp HHHHHHHCTT-EEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-eEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 1111111235 799999998653221 1 11 2578999999999999998765
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=3.7e-12 Score=117.00 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=120.0
Q ss_pred CccccchhhHHHHHHHHhc----CCCe--EEEEEecCCCcHHHHHHHHHHhhccCCCC-CcEEEEEEecCccCHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME----EHAG--IVGLYGMGGVGKTTLLTQINNRFFDTPNH-FDFVIWVVVSRDLQLEKIQES 216 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 216 (337)
+.++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++.. ... -..++|++++...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5699999999999988865 3334 89999999999999999999987 232 235778888887788899999
Q ss_pred HHHHhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCc--cccccccCCCCCCC----CCCcEEEEeeCChhH
Q 045709 217 IAKKIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWEL--VDLDQVGLPIPSRT----SVSNKVVFTTREFGV 288 (337)
Q Consensus 217 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~~----~g~s~IiiTtr~~~v 288 (337)
++..++...+. ...+.......+...+. +++.+|||||++.. ..+..+...+.... .+ ..||++|+....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~-~~iI~~~~~~~~ 171 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR-IALVIVGHNDAV 171 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC-EEEEEEESSTHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC-EEEEEEECCchH
Confidence 99988754321 23455666666666664 56889999999875 22333322222111 34 788888887644
Q ss_pred Hhhcc-------CCceeecCCCCHHHHHHHHhHhhC
Q 045709 289 CGQME-------AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 289 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
...+. ....+.+++++.++..+++...+.
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 32221 123699999999999999988763
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=5.1e-11 Score=100.24 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL 223 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 223 (337)
..++|++..++.+..++.....+.+.|+|++|+|||+||+.+++.... ...-...+.++.+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhcc
Confidence 458999999999999998766656999999999999999999987621 1111123344444333332222221111110
Q ss_pred CCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChhH-Hhh-ccCCceee
Q 045709 224 FNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFGV-CGQ-MEAHRSFK 299 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~v-~~~-~~~~~~~~ 299 (337)
.. ...+++.+|||||++... .+..+...+.....+ +.+|+||+.... ... ......+.
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcCHHHHHhCceee
Confidence 00 012568899999998652 233333223222345 788888876532 111 12234789
Q ss_pred cCCCCHHHHHHHHhHhhC
Q 045709 300 VECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 300 l~~L~~~ea~~Lf~~~~~ 317 (337)
+++++.++..+++.+.+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.23 E-value=8.1e-11 Score=100.34 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
..++||+..++.|..++.... .+.+.|+|++|+|||||++.+++... ....+.. ..+. .... ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~---~~~~---~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCG---VCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS---SCCS---CSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC---CCCc---ccHH-HHHHhccCC
Confidence 458999999999999987653 45889999999999999999998772 1111100 0000 0000 001110000
Q ss_pred CCCccc--cCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCChhHH-hh-
Q 045709 223 LFNESW--KNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFGVC-GQ- 291 (337)
Q Consensus 223 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~-~~- 291 (337)
...-.. ...........+...+ .+++.+|||||++.. ..+..+...+.....+ ..+|+||+..... ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT-EEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCCHHH
Confidence 000000 0001111122222222 346799999999764 3344443333333345 7888888765421 11
Q ss_pred ccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 292 MEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 292 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
......+++++++.++..+++...+..
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 122467899999999999999988753
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=3.2e-10 Score=101.29 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL 223 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 223 (337)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++.... .......++++.+.......+ ..++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 458999999999999998766555999999999999999999988621 111112344443332222221 122221110
Q ss_pred CCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChhH-Hhh-ccCCcee
Q 045709 224 FNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFGV-CGQ-MEAHRSF 298 (337)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~v-~~~-~~~~~~~ 298 (337)
.. ..+ .+++.++||||++... .+..+...+.....+ +.+|+||....- ... .+....+
T Consensus 99 ~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 99 KK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS-TRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp BC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEE
T ss_pred cc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCC-ceEEEEeCChhhchhHHHhhceEE
Confidence 00 001 3468899999998642 233333223222345 788888876432 111 1233588
Q ss_pred ecCCCCHHHHHHHHhHhhC
Q 045709 299 KVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+.+++.++..+++...+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.2e-09 Score=96.95 Aligned_cols=168 Identities=10% Similarity=0.082 Sum_probs=106.0
Q ss_pred cccchhhHHHHHHHHhc----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CC--cEEEEEEecCccCHHHHHHHH
Q 045709 146 VVGLQLTFDRVWRCLME----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HF--DFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f--~~~~wv~~~~~~~~~~~~~~i 217 (337)
+.||+++++.|...|.. ...+.+.|+|++|+|||++++.+++....... .. -..+++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999999877753 57788999999999999999999998832111 11 146677877778888999999
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHh---cCCcEEEEEecCCCccccccccCCC--CCCCCCCcEEEEeeCChh-----
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKIL---SKKKFVLLLDDIWELVDLDQVGLPI--PSRTSVSNKVVFTTREFG----- 287 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l--~~~~~g~s~IiiTtr~~~----- 287 (337)
++++...... ..... .....+...+ .+++++++||+++...+-+-+...+ +....+...||.++...+
T Consensus 102 ~~~L~g~~~~-~~~~~-~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLC-GDISL-EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC---CCCCH-HHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCC-chHHH-HHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9999653211 12222 3333333333 4668999999998764322221111 111111023333443321
Q ss_pred H----HhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 288 V----CGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 288 v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
+ .+.++ ...+.++|++.+|-.+++.+++
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 11221 2468999999999999999987
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.04 E-value=4.5e-10 Score=92.13 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCC----CCcEEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++||++.++.+.+.+.......+.|+|++|+|||+||+.+++....... .....++++++ .+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HHH-----
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HHh-----
Confidence 458999999999999998776778899999999999999999887632111 11234444332 111
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHh--cCCcEEEEEecCCCcc---------ccccccCCCCCCCCCCcEEEEeeCChhH
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKIL--SKKKFVLLLDDIWELV---------DLDQVGLPIPSRTSVSNKVVFTTREFGV 288 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~g~s~IiiTtr~~~v 288 (337)
.... ...........+...+ .+++.+|+|||++... .+..+...+... .+ ..+|.||.....
T Consensus 91 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~~-~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 --AGAK---YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GE-LHCVGATTLDEY 163 (195)
T ss_dssp --TTTC---SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TS-CCEEEEECHHHH
T ss_pred --ccCC---ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-CC-eEEEEeCCHHHH
Confidence 0000 0001111222222222 3568899999997642 111111111111 23 567777765542
Q ss_pred Hh------hc-cCCceeecCCCCHHHHHHHH
Q 045709 289 CG------QM-EAHRSFKVECLRYDDAWKLF 312 (337)
Q Consensus 289 ~~------~~-~~~~~~~l~~L~~~ea~~Lf 312 (337)
.. .+ .....+.+++++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 11 11236889999998877654
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.1e-09 Score=98.00 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC-cEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF-DFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|++..++.+..++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.++.+.......+ ...+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 98 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-REKVK--- 98 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-HHHHH---
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-HHHHH---
Confidence 45899999999999999877666699999999999999999998862 1111 12333333321111110 00010
Q ss_pred CCCccccCCCHHHHHHHHHHH--h-cCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeCChhH-Hhhc-cCC
Q 045709 223 LFNESWKNKSMQEKAQEIFKI--L-SKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTREFGV-CGQM-EAH 295 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr~~~v-~~~~-~~~ 295 (337)
..... + .+++.++|+||++.. ..+..+...+.....+ +++|+||....- ...+ ...
T Consensus 99 ----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 99 ----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp ----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHTE
T ss_pred ----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCCccccCHHHHhhC
Confidence 01000 1 256789999999865 2333333323222345 788888876432 1111 122
Q ss_pred ceeecCCCCHHHHHHHHhHhhCCC
Q 045709 296 RSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
..+.+.+++.++...++...+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred cEEEecCCCHHHHHHHHHHHHHhc
Confidence 478999999999999998876433
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=4.8e-09 Score=92.09 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.+++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++.. ...| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATF---IRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEE---EEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehHHHHH-
Confidence 4689999999999887643 345679999999999999999999877 2222 2232221100
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc----------------ccccccCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV----------------DLDQVGLPIP--SR 272 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 272 (337)
. ............+.......+.+|+|||++... .+..+...+. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 011111112222233334567899999997531 0111111110 11
Q ss_pred CCCCcEEEEeeCChhHHh-h-c---cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCG-Q-M---EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
..+ ..||.||....... . . .....+.+++.+.++..++|...+.......+.++..++..
T Consensus 154 ~~~-~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 3h4m_A 154 RGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKM 218 (285)
T ss_dssp SSS-EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH
T ss_pred CCC-EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 224 67777887543311 0 1 11246899999999999999998865543444556666553
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.86 E-value=9.7e-09 Score=91.40 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc-EEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~----------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID----------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH-----------
Confidence 45899999999999988776655699999999999999999998762 11111 22333333211100
Q ss_pred CCCccccCCCHHHHHHHHHHH--h-cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-HHhh-ccCC
Q 045709 223 LFNESWKNKSMQEKAQEIFKI--L-SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-VCGQ-MEAH 295 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~-~~~~ 295 (337)
........+... + .+++.++|+|+++... ....+...+.....+ +.+|+||.... +... ....
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS-EEEEEEESCGGGSCHHHHTTC
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcchHHHhhC
Confidence 011111111111 1 2567899999997652 234444444333345 78888887643 2111 1223
Q ss_pred ceeecCCCCHHHHHHHHhHhhCC
Q 045709 296 RSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 296 ~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
..+.+.+++.++...++...+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHT
T ss_pred eEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999887643
No 21
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.74 E-value=4.6e-08 Score=91.26 Aligned_cols=154 Identities=17% Similarity=0.161 Sum_probs=90.6
Q ss_pred ccc-cchhh--HHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH
Q 045709 145 TVV-GLQLT--FDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 145 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
+|+ |.... ...+........ ...+.|+|++|+||||||+.+++.... ...-..+++++.. .+...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 455 64433 334444443333 678999999999999999999987721 1111234555443 234444444
Q ss_pred hCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----cccccCCCCC-CCCCCcEEEEeeCCh---------
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----LDQVGLPIPS-RTSVSNKVVFTTREF--------- 286 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g~s~IiiTtr~~--------- 286 (337)
+... . ...+...+..+.-+|+|||++.... .+.+...+.. ...| ..||+||.+.
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCCH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHHH
Confidence 4221 1 1223344444677999999976532 1222222110 1245 7888888863
Q ss_pred hHHhhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 287 GVCGQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 287 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+...+..+..+.+++++.++-..++.+.+.
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2333344456789999999999999998874
No 22
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=1e-07 Score=86.79 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|++..++.+.+.+..+. .+.+.|+|++|+||||+|+.+++... ....+.. ..+.. .. ....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~---~~~~~---~~-~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA---TPCGV---CD-NCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCS---SCCSS---SH-HHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCC---CCCcc---cH-HHHHHhccCC
Confidence 458999999999999987654 45789999999999999999988772 1111100 00000 00 1111111000
Q ss_pred C-----CCc-cccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-H
Q 045709 223 L-----FNE-SWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-V 288 (337)
Q Consensus 223 ~-----~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v 288 (337)
. ... ....... ..+...+ .+++.+||+||++... .++.+...+.....+ ..+|++|.... +
T Consensus 88 ~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l 162 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDT----RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKL 162 (373)
T ss_dssp SSCEEEETTCSCCSSCH----HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS-EEEEEEESCGGGS
T ss_pred CceEEecccccCCHHHH----HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc-eEEEEEeCChHhC
Confidence 0 000 0011112 2222222 3567899999997642 233333223222234 67777776543 2
Q ss_pred Hh-hccCCceeecCCCCHHHHHHHHhHhh
Q 045709 289 CG-QMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 289 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
.. .......+++.+++.++..+++.+.+
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 11 11233678999999999999998766
No 23
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.69 E-value=8e-08 Score=85.20 Aligned_cols=151 Identities=13% Similarity=0.143 Sum_probs=85.7
Q ss_pred ccccchhhHHHHHHHHh---------------cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC
Q 045709 145 TVVGLQLTFDRVWRCLM---------------EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ 209 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 209 (337)
.++|.+..++.|.+.+. ......+.|+|++|+|||+||+.+++.... ........++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47899888888876653 234557899999999999999988887632 111111112222211
Q ss_pred HHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc-----------cccccccCCCCCCCCCCcE
Q 045709 210 LEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL-----------VDLDQVGLPIPSRTSVSNK 278 (337)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~g~s~ 278 (337)
. +... ............+... +..+|+||+++.. .....+...+.....+ ..
T Consensus 109 --~--------l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~ 171 (309)
T 3syl_A 109 --D--------LVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD-LV 171 (309)
T ss_dssp --G--------TCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT-CE
T ss_pred --H--------hhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC-EE
Confidence 0 0000 0111111122222222 3469999999843 1122332223223334 67
Q ss_pred EEEeeCChh----------HHhhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 279 VVFTTREFG----------VCGQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 279 IiiTtr~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
||.||.... +...+ ...+.+++++.++-..++...+.
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 888876432 22222 26789999999999999988764
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.69 E-value=9.5e-09 Score=87.48 Aligned_cols=144 Identities=8% Similarity=0.079 Sum_probs=85.3
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGL---QLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
.+|+|. +..+..+..++.....+.+.|+|++|+||||||+.+++... .....+.|++++..... +
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------C---
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------H---
Confidence 356763 35566666666655678899999999999999999998873 22334566665432110 0
Q ss_pred hCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----cccccCCCCC-CCCCCcEEEEeeCChh--------
Q 045709 221 IGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----LDQVGLPIPS-RTSVSNKVVFTTREFG-------- 287 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g~s~IiiTtr~~~-------- 287 (337)
. . ....+ .++.+|||||++.... ...+...+.. ...+..++|+||+...
T Consensus 96 ----~---~----------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 96 ----T---A----------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp ----G---G----------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred ----H---H----------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 0 00011 3467999999976522 1222111110 0112135888876422
Q ss_pred -HHhhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 288 -VCGQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 288 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+...+.....+.+++++.++..+++...+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 222222236789999999999999998774
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.64 E-value=3.6e-07 Score=85.16 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=87.3
Q ss_pred CccccchhhH---HHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHH
Q 045709 144 PTVVGLQLTF---DRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKK 220 (337)
Q Consensus 144 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 220 (337)
..++|.+..+ ..|...+.....+.+.|+|++|+||||||+.+.+.. ...|. .++... .....+ ..++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~---~l~a~~-~~~~~i-r~~~-- 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADVE---RISAVT-SGVKEI-REAI-- 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEEE---EEETTT-CCHHHH-HHHH--
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCeE---EEEecc-CCHHHH-HHHH--
Confidence 4589998888 778888877777889999999999999999999887 33332 122111 111111 1111
Q ss_pred hCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCc--cccccccCCCCCCCCCCcEEEE-eeCChhH---Hhhcc
Q 045709 221 IGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVF-TTREFGV---CGQME 293 (337)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~Iii-Ttr~~~v---~~~~~ 293 (337)
..... ...+++.+|+||+++.. ...+.+...+.. +...+|. ||.+... .....
T Consensus 96 -----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 96 -----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp -----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT---TSCEEEEEESSCGGGSSCHHHHT
T ss_pred -----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---CceEEEecCCCCcccccCHHHhC
Confidence 11111 12467889999999865 233334333332 2134443 5555431 11122
Q ss_pred CCceeecCCCCHHHHHHHHhHhhC
Q 045709 294 AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 294 ~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
...++.+++++.++...++.+.+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHH
Confidence 335789999999999999988864
No 26
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.58 E-value=1.8e-06 Score=76.31 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.+++|.+..++.|.+++.. .....+.|+|++|+|||+||+.+++.. ...| +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~---i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANF---ISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEE---EEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCE---EEEE------h
Confidence 4588999888888777642 345679999999999999999999877 2222 2222 2
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SR 272 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 272 (337)
..+.... .+.. .......+.......+.+|+||+++.... ...+...+. ..
T Consensus 83 ~~l~~~~---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2232221 1211 11122223333345789999999974210 111211111 11
Q ss_pred CCCCcEEEEeeCChhHH-hh-cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 273 TSVSNKVVFTTREFGVC-GQ-ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~-~~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
..+ ..||.||...... .. .. ....+.++..+.++-.++|...+.......+.++..++.
T Consensus 152 ~~~-v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~ 215 (301)
T 3cf0_A 152 KKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 215 (301)
T ss_dssp TSS-EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred CCC-EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHH
Confidence 223 5677777655322 11 11 235788999999999999988775433233344555544
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.58 E-value=2.8e-07 Score=79.55 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=83.5
Q ss_pred CccccchhhHHHHHHHHh---c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+++. . ...+.+.|+|++|+|||++|+.+++.. ...| +.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPF---LAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCE---EEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEechHHHHhh-
Confidence 458999888877766542 1 234568899999999999999999987 2332 33343321100
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc-------------c----cccccCCCCC--C
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV-------------D----LDQVGLPIPS--R 272 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~~--~ 272 (337)
+...........+.......+.+|+|||++... . +..+...+.. .
T Consensus 79 ----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 ----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 011111122222333334567899999998641 0 1111111111 1
Q ss_pred CCCCcEEEEeeCChhHH-hhc-c---CCceeecCCCCHHHHHHHHhHhhC
Q 045709 273 TSVSNKVVFTTREFGVC-GQM-E---AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~-~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
..+ ..||.||...... ..+ . ....+.+++.+.++-.++|...+.
T Consensus 143 ~~~-~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 143 TDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp TCC-EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred CCC-EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 223 5666677654421 111 1 235678999999999999988763
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=1.2e-07 Score=85.71 Aligned_cols=167 Identities=11% Similarity=0.144 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccC-CCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDT-PNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
..++|+++.++.+..++.....+.+.|+|++|+||||+|+.+.+..... ...+ ....++.+.......+ .+....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 4589999999999999877655558999999999999999998875100 0111 2233333332222222 22121111
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-HHhh-ccCCcee
Q 045709 223 LFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-VCGQ-MEAHRSF 298 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~-~~~~~~~ 298 (337)
..... ..... .....-.++.-+|++|+++... ....+...+...... .++|++|.... +... ......+
T Consensus 115 ~~~~~-~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 115 RLTVS-KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HSCCC-CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhccc-ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCC-ceEEEEeCchhhCcchhhccCceE
Confidence 00000 00000 0001112355699999987642 222232222222234 67777775433 1111 1122478
Q ss_pred ecCCCCHHHHHHHHhHhhCCC
Q 045709 299 KVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 299 ~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
.+.+++.++....+...+...
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~ 208 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQE 208 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877433
No 29
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.55 E-value=3.2e-07 Score=82.00 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=81.7
Q ss_pred HHHHHHHHhcC--CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccC
Q 045709 153 FDRVWRCLMEE--HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKN 230 (337)
Q Consensus 153 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 230 (337)
...+...+..+ ....+.|+|++|+||||||+.+++..... . ..++++++. .+...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~~~~~~------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMVEHLKK------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHHHHHHH-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHHHHHHc-------
Confidence 34445544443 34689999999999999999999887321 2 234455432 333333333321
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEecCCCccc----cccccCCCCC-CCCCCcEEEEeeCChh---------HHhhccCCc
Q 045709 231 KSMQEKAQEIFKILSKKKFVLLLDDIWELVD----LDQVGLPIPS-RTSVSNKVVFTTREFG---------VCGQMEAHR 296 (337)
Q Consensus 231 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~-~~~g~s~IiiTtr~~~---------v~~~~~~~~ 296 (337)
.... .+...+ .+..+|+|||++.... ...+...+.. ...+ ..||+||.+.. +...+....
T Consensus 87 ~~~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 87 GTIN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp TCHH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred CcHH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 0111 122222 2367999999976532 1222211110 1234 67888876432 233333446
Q ss_pred eeecCCCCHHHHHHHHhHhhC
Q 045709 297 SFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 297 ~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+.+++ +.++...++...+.
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHH
Confidence 789999 99999999998874
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.54 E-value=3.6e-06 Score=75.06 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++... .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh--
Confidence 4578999888888776631 2346789999999999999999998761 11 223333332110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCccc-------------cccccCC---CCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVD-------------LDQVGLP---IPSRTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 274 (337)
.+..... .....+.. .-..++.+|+||+++.... ...+... +.....
T Consensus 85 ---------------~~~g~~~-~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGESE-KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSCH-HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHHH-HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0011222 22233332 3346788999999986411 0111111 111123
Q ss_pred CCcEEEEeeCChhHH-hhc--cCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 275 VSNKVVFTTREFGVC-GQM--EAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 275 g~s~IiiTtr~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ ..||.||...... ..+ .....+.++..+.++-.++|...+...
T Consensus 149 ~-v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~ 195 (322)
T 1xwi_A 149 G-ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTT 195 (322)
T ss_dssp T-EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTC
T ss_pred C-EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcC
Confidence 3 4555566543221 111 233578899999999999998887543
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.53 E-value=4.7e-07 Score=80.86 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=88.9
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchH------
Confidence 4589999999999887721 134678999999999999999999887 3332 222221
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCccc-------------cccccCC---CCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVD-------------LDQVGLP---IPSRTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 274 (337)
.+. ... .. ........+.. .-..++.+|+||+++.... ...+... +.....
T Consensus 86 ~l~----~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLV----SKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHH----TTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHh----hcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 000 11 11222223322 2345678999999985421 1111111 111223
Q ss_pred CCcEEEEeeCChhH-----HhhccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 275 VSNKVVFTTREFGV-----CGQMEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 275 g~s~IiiTtr~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ ..||.||..... .. .....+.++..+.++-.++|..++...
T Consensus 154 ~-v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~ 200 (322)
T 3eie_A 154 G-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDT 200 (322)
T ss_dssp C-EEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTC
T ss_pred c-eEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccC
Confidence 4 566667765432 22 234577899999999999999988643
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=1.2e-07 Score=85.67 Aligned_cols=165 Identities=8% Similarity=0.071 Sum_probs=87.1
Q ss_pred CccccchhhHHHHHHHH-hcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC-CC--CcE--------------------E
Q 045709 144 PTVVGLQLTFDRVWRCL-MEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP-NH--FDF--------------------V 199 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~--f~~--------------------~ 199 (337)
.+++|++..++.+.+++ ...+.+.+.|+|++|+||||+++.+++...... +. ++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999998888 555544499999999999999999988541111 10 000 0
Q ss_pred EEEEecCcc-CHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc--cccccCCCCCCCCCC
Q 045709 200 IWVVVSRDL-QLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD--LDQVGLPIPSRTSVS 276 (337)
Q Consensus 200 ~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~g~ 276 (337)
+.+..+... .......+++..+..... ..... .+. .+.+++-++|||++..... ...+...+.....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~- 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN- 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT-
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC-
Confidence 111111000 000011222222211000 00000 000 0234677999999987421 22222222111235
Q ss_pred cEEEEeeCChh-HHhhc-cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 277 NKVVFTTREFG-VCGQM-EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 277 s~IiiTtr~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+.+|++|.+.. +...+ +....+++++++.++....+.+.+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 78888887632 22111 2236789999999999999998764
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.52 E-value=4e-07 Score=82.75 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=36.7
Q ss_pred CccccchhhHHH---HHHHHhcCC--CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDR---VWRCLMEEH--AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~---l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..|+|++..+.. +...+.... .+.+.|+|++|+|||+||+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988766 444444443 3589999999999999999999988
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.52 E-value=2.6e-07 Score=75.10 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=41.5
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++||+.++..+.+.+.......+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987767788999999999999999999877
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.50 E-value=7.7e-07 Score=77.41 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHH-------HHh---cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHH
Q 045709 144 PTVVGLQLTFDRVWR-------CLM---EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKI 213 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 213 (337)
..++|....++.+.. .+. ......+.|+|++|+|||+||+.+++.. ...| +.++.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~----- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM----- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh-----
Confidence 357888777666655 232 2356789999999999999999999876 2332 222222110
Q ss_pred HHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc-----------c-cccccCCCC---CCCCCCcE
Q 045709 214 QESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV-----------D-LDQVGLPIP---SRTSVSNK 278 (337)
Q Consensus 214 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~-~~~l~~~l~---~~~~g~s~ 278 (337)
.+. . ...........+......+..+|+|||++... . +..+...+. ..... ..
T Consensus 102 -------~g~-~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~-~~ 169 (272)
T 1d2n_A 102 -------IGF-S---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK-LL 169 (272)
T ss_dssp -------TTC-C---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE-EE
T ss_pred -------cCC-c---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC-EE
Confidence 000 0 00000111222233334668899999986530 0 111211111 12223 45
Q ss_pred EEEeeCChhHHhh---ccC-CceeecCCCCH-HHHHHHHhHh
Q 045709 279 VVFTTREFGVCGQ---MEA-HRSFKVECLRY-DDAWKLFEQK 315 (337)
Q Consensus 279 IiiTtr~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~ 315 (337)
||.||........ .+. ...+.+++++. ++...++...
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence 6677776654332 111 35689999998 6666666553
No 36
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=6.5e-07 Score=79.19 Aligned_cols=147 Identities=10% Similarity=0.104 Sum_probs=90.5
Q ss_pred cchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC-CCCcEEEEEEecC-ccCHHHHHHHHHHHhCCCC
Q 045709 148 GLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFDFVIWVVVSR-DLQLEKIQESIAKKIGLFN 225 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 225 (337)
|.++.++.|.+.+.+++.+.+.++|++|+||||+|+.+.+...... .+.+ ..+++.+. ...+.. .+++...+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 4456677888888777778999999999999999999987631111 2333 34454432 223222 233444443211
Q ss_pred ccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCCh-hHHhhccCCceeecCC
Q 045709 226 ESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREF-GVCGQMEAHRSFKVEC 302 (337)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~-~v~~~~~~~~~~~l~~ 302 (337)
..+++-++|+|+++... ..+.+...+..-... +.+|++|.+. .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~-t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEY-AVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTT-EEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCC-eEEEEEECChHhChHHHHce-eEeCCC
Confidence 02456799999998652 233343333222234 7777776554 344444445 899999
Q ss_pred CCHHHHHHHHhHhh
Q 045709 303 LRYDDAWKLFEQKV 316 (337)
Q Consensus 303 L~~~ea~~Lf~~~~ 316 (337)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=7.4e-07 Score=84.83 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=91.5
Q ss_pred CccccchhhHHHHHHHHhc-----------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 144 PTVVGLQLTFDRVWRCLME-----------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
.+++|++..++.|.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999865 134789999999999999999999876 1 2 234455554
Q ss_pred ccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH--hcCCcEEEEEecCCCccc-----cccccCCCCCCCCCCcEE
Q 045709 207 DLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI--LSKKKFVLLLDDIWELVD-----LDQVGLPIPSRTSVSNKV 279 (337)
Q Consensus 207 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~g~s~I 279 (337)
..... +....+....... +........... ..+++.+|+||+++.... +..+...+.. .+ ..|
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~-~~i 182 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TS-TPL 182 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CS-SCE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cC-CCE
Confidence 43332 2222222111100 000000000001 135688999999976522 1222222211 22 456
Q ss_pred EEeeCChh---HHhhccCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 280 VFTTREFG---VCGQMEAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 280 iiTtr~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
|+++.... +.........+.+++++.++..+++...+..
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 66555432 2222223457899999999999999887643
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.46 E-value=7.4e-07 Score=79.56 Aligned_cols=137 Identities=10% Similarity=0.057 Sum_probs=83.0
Q ss_pred CccccchhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
.+++|.+..+..+.+++.... .+++.+.|++|+|||++|+.+++.. . ...+.++.+.. .... +...+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~-i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDF-VRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHH-HHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHH-HHHHHHHHH
Confidence 568999999999999998654 4577778889999999999998876 1 22344554332 1221 222111110
Q ss_pred CCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc---ccccccCCCCCCCCCCcEEEEeeCChh-----HHhhccC
Q 045709 223 LFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV---DLDQVGLPIPSRTSVSNKVVFTTREFG-----VCGQMEA 294 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~g~s~IiiTtr~~~-----v~~~~~~ 294 (337)
... ...+++.+|+|||++... ....+...+.....+ ..+|+||.... +.+.
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~-~~iI~~~n~~~~l~~~l~sR--- 156 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSN-CSIIITANNIDGIIKPLQSR--- 156 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGG-CEEEEEESSGGGSCTTHHHH---
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCC-cEEEEEeCCccccCHHHHhh---
Confidence 000 012367899999998754 223332222211234 68888887643 2222
Q ss_pred CceeecCCCCHHHHH
Q 045709 295 HRSFKVECLRYDDAW 309 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~ 309 (337)
...+.+++++.++-.
T Consensus 157 ~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 157 CRVITFGQPTDEDKI 171 (324)
T ss_dssp SEEEECCCCCHHHHH
T ss_pred CcEEEeCCCCHHHHH
Confidence 247899999988743
No 39
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.45 E-value=1.2e-06 Score=82.29 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC--CCC-c-EEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP--NHF-D-FVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++||+.++..+...|......-+.|+|++|+|||++|+.++....... ... . ..+.++++ ..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~~ 247 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------TK 247 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------cc
Confidence 35899999999999999776666778999999999999999998862111 000 1 12222222 00
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh-------hc
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG-------QM 292 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~-------~~ 292 (337)
..+. ....... .+...-..++.+|++| -.......+...+. .|..++|.+|....... ..
T Consensus 248 ~~g~-----~e~~~~~---~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 248 YRGE-----FEDRLKK---VMDEIRQAGNIILFID--AAIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHH---HHHHHHTCCCCEEEEC--C--------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ccch-----HHHHHHH---HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 0000 0111112 2222223567899999 22222222333332 23246666555443111 01
Q ss_pred cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 293 EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.....+.+++.+.++..+++...+.
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 1224689999999999999987653
No 40
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.43 E-value=3e-06 Score=79.84 Aligned_cols=166 Identities=12% Similarity=0.137 Sum_probs=96.6
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
..++|.+..++.|.+++.. ....-+.|+|++|+|||+||+.+++.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEch-----
Confidence 3579999999998887642 345678999999999999999998876 222 2333321
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCCC--CCCCC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPIP--SRTSV 275 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~g 275 (337)
.+. ..+ ...........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 273 -~l~----~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -EIM----SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -HHH----TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -Hhh----hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 100 111112223334444456788999999953210 111111111 11223
Q ss_pred CcEEEEeeCChhH-Hhhc----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 276 SNKVVFTTREFGV-CGQM----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 276 ~s~IiiTtr~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
..||.||..... ...+ .....+.++..+.++-.++|..++..-....+..+..++..
T Consensus 341 -v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~ 402 (489)
T 3hu3_A 341 -VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (489)
T ss_dssp -EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHT
T ss_pred -eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Confidence 466667765432 1111 12346899999999999999988754443344556666653
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.42 E-value=1.1e-06 Score=79.58 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=86.8
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEeeHH------
Confidence 4589999999998887631 123568899999999999999999987 2322 222221
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHH-HHhcCCcEEEEEecCCCccc-------------cccccCCC---CCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIF-KILSKKKFVLLLDDIWELVD-------------LDQVGLPI---PSRTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~ 274 (337)
.+. ... ..... .....+. ..-..++.+|+||+++.... ...+...+ .....
T Consensus 119 ~l~----~~~-------~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DLV----SKW-------MGESE-KLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HHH----SCC----------CH-HHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HHh----hhh-------cchHH-HHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 100 11111 2222222 22345789999999985421 11121111 11123
Q ss_pred CCcEEEEeeCChh-----HHhhccCCceeecCCCCHHHHHHHHhHhhCCC
Q 045709 275 VSNKVVFTTREFG-----VCGQMEAHRSFKVECLRYDDAWKLFEQKVGAD 319 (337)
Q Consensus 275 g~s~IiiTtr~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 319 (337)
+ ..||.||.... +.. .....+.++..+.++-.++|..++...
T Consensus 187 ~-v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 187 G-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDT 233 (355)
T ss_dssp C-EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred C-eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhC
Confidence 3 55666676542 222 234577899999999999999887543
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.42 E-value=7e-07 Score=90.12 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCC--CC--CcEEEEEEecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTP--NH--FDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~--f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
..++||++++..+...|.....+.+.++|.+|+|||+||+.+++...... .. -..+++++++.-. .
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----------~ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----------A 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh----------c
Confidence 45899999999999999876666788999999999999999998762111 11 1233444332110 0
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhc--CCcEEEEEecCCCccc-------cc---cccCCCCCCCCCCcEEEEeeCChh
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILS--KKKFVLLLDDIWELVD-------LD---QVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~---~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
+.. ...........+...+. +++.+|+||+++.... ++ .+...+.. .+ ..+|.+|....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~-i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GE-LRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TC-CCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CC-eEEEEecCchH
Confidence 000 01122333333333332 3678999999976421 11 11111211 12 45666555433
Q ss_pred H-----Hhhc-cCCceeecCCCCHHHHHHHHhHh
Q 045709 288 V-----CGQM-EAHRSFKVECLRYDDAWKLFEQK 315 (337)
Q Consensus 288 v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 315 (337)
. ...+ .....+.+++++.++..+++...
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 2 1111 12245899999999999999754
No 43
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.3e-06 Score=76.80 Aligned_cols=165 Identities=16% Similarity=0.200 Sum_probs=96.3
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|-++.++.|.+.+.- ...+-+.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 3467888888887766531 245678899999999999999999988 3333 2333322110
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCccc----------------cccccCCCC--C
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--S 271 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~ 271 (337)
.+.+.+ +...+.+.. .-...+++|+||+++.... ...+...+. .
T Consensus 221 ----------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 001111 122222222 2246789999999985410 111111111 1
Q ss_pred CCCCCcEEEEeeCChhHHh-h-c---cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 272 RTSVSNKVVFTTREFGVCG-Q-M---EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
...+ -.||.||...+... . . .-+..+.++.-+.++-.++|+.+...-....+-++..+|+.
T Consensus 284 ~~~~-V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~ 349 (405)
T 4b4t_J 284 TSKN-IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEK 349 (405)
T ss_dssp CCCC-EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHH
T ss_pred CCCC-eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 1223 45666776544321 1 1 23568899999999999999888755443445567777754
No 44
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.5e-06 Score=78.16 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCc-EEEEEEecCccCHHHHHHHHHHHhC
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFD-FVIWVVVSRDLQLEKIQESIAKKIG 222 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~ 222 (337)
..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++... ...+. .+..++.+.......+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i--------- 93 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVV--------- 93 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHH---------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHH---------
Confidence 34689998999998888776655589999999999999999998862 11211 1222222221122111
Q ss_pred CCCccccCCCHHHHHHHHHHHh------cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-HHhh-c
Q 045709 223 LFNESWKNKSMQEKAQEIFKIL------SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-VCGQ-M 292 (337)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~-~ 292 (337)
...+.... .+..-++|+|+++... ..+.+...+...... +.+|++|.... +... .
T Consensus 94 --------------r~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 94 --------------RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN-TRFCVLANYAHKLTPALL 158 (340)
T ss_dssp --------------HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHH
T ss_pred --------------HHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC-eEEEEEecCccccchhHH
Confidence 11111111 2346789999997542 222222222111234 67777775432 1111 1
Q ss_pred cCCceeecCCCCHHHHHHHHhHhh
Q 045709 293 EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 293 ~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
+....+.+.+++.++..+.+...+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHH
Confidence 223478899999999988888766
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.39 E-value=4.1e-06 Score=74.54 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
..++|++..+..+..++.. .....+.|+|++|+|||+||+.+++.. ... ..+++++.......+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHH---
Confidence 4689999999988887752 244678899999999999999999877 222 23444333222222111
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc--cccccCCCC---------C---------CCCCCcE
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD--LDQVGLPIP---------S---------RTSVSNK 278 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~---------~---------~~~g~s~ 278 (337)
.+ ... ..+..+|+|||++.... ...+...+. . ...+ ..
T Consensus 83 -~l-------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~ 140 (324)
T 1hqc_A 83 -IL-------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR-FT 140 (324)
T ss_dssp -HH-------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC-CE
T ss_pred -HH-------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC-EE
Confidence 11 110 13456888898876421 111110000 0 0023 46
Q ss_pred EEEeeCChh-HHhhc-c-CCceeecCCCCHHHHHHHHhHhhCC
Q 045709 279 VVFTTREFG-VCGQM-E-AHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 279 IiiTtr~~~-v~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
+|.||.... +...+ . ....+.+++++.++...++...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL 183 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh
Confidence 666665432 21111 1 1257899999999999999887743
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=2e-06 Score=77.18 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
..++|++..++.+..++.. .....+.|+|++|+|||+||+.+++.. ...| +.++++.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-----
Confidence 4589999999998888853 345678999999999999999998876 3333 22333221111111
Q ss_pred HHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc--ccccccCCC------------------CCCCCCCcE
Q 045709 219 KKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV--DLDQVGLPI------------------PSRTSVSNK 278 (337)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~g~s~ 278 (337)
...+.. ..+..+|+||+++... ....+...+ ....++ ..
T Consensus 98 ------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (338)
T 3pfi_A 98 ------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK-FT 156 (338)
T ss_dssp ------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC-CE
T ss_pred ------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC-eE
Confidence 111111 2356788889887541 111111000 001112 45
Q ss_pred EEEeeCChhH-Hhh-cc-CCceeecCCCCHHHHHHHHhHhhC
Q 045709 279 VVFTTREFGV-CGQ-ME-AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 279 IiiTtr~~~v-~~~-~~-~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
+|.+|..... ... .. ....+.+++++.++...++.+.+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 6666665332 111 11 235789999999999999988764
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.37 E-value=5.5e-06 Score=77.26 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=86.1
Q ss_pred CccccchhhHHHHHHHHh------------cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM------------EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.. .. . .++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~--~~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--S--TFFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--S--EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--C--CEEEEeHH----
Confidence 458999999998888763 1235678999999999999999999876 11 1 12233222
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCCCC---CCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPIPS---RTSV 275 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~g 275 (337)
.+.... .+. ......... ...-...+.+|+||+++.... ...+...+.. ...+
T Consensus 203 ~l~~~~---~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKW---LGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhh---cch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111110 111 111122222 222235788999999986410 1122222211 1233
Q ss_pred CcEEEEeeCChhHH-hh-c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 276 SNKVVFTTREFGVC-GQ-M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 276 ~s~IiiTtr~~~v~-~~-~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
..||.||...... .. . .....+.++..+.++-..+|..++..
T Consensus 272 -v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 272 -ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp -CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred -EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 5666677654321 11 1 12356788888999999999888754
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.36 E-value=4.4e-06 Score=75.68 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=85.6
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GAT---FFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCe---EEEEehHHhhc--
Confidence 4589999999998887642 345688999999999999999998876 222 33444432110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCccc-------------cccccCCC---C-CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVD-------------LDQVGLPI---P-SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~-~~~ 273 (337)
. +.. ........+.. .-..++.+|+||+++.... +..+...+ . ...
T Consensus 156 ------------~---~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K---WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S---STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c---ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 000 11122222222 2235678999999964310 11221111 1 111
Q ss_pred CCCcEEEEeeCChh-HHhhc--cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 274 SVSNKVVFTTREFG-VCGQM--EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 274 ~g~s~IiiTtr~~~-v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.+ ..||.||.... +...+ .....+.++..+.++..+++...+.
T Consensus 220 ~~-v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 220 DR-ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp CC-EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CC-EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 23 45665665432 21111 1234678999999999999887763
No 49
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.35 E-value=1.4e-06 Score=75.54 Aligned_cols=150 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|-. ++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~---v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFS---MGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCC---CCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEE---echHHHHH--
Confidence 4589998888877765531 123447799999999999999999987 223211 11111000
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCcc-----------------ccccccCCCCC---
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELV-----------------DLDQVGLPIPS--- 271 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~--- 271 (337)
.+... ....... .+......++.+|+|||++... .+..+...+..
T Consensus 83 --------~~~~~----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 --------MFVGL----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------SCSSS----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hhcch----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00000 0011111 1222223467899999996531 12223222211
Q ss_pred CCCCCcEEEEeeCChhHHh-h-cc---CCceeecCCCCHHHHHHHHhHhhC
Q 045709 272 RTSVSNKVVFTTREFGVCG-Q-ME---AHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
.... ..||.||....... . .. ....+.+++.+.++-.+++...+.
T Consensus 148 ~~~~-v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 148 ENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SCSC-CEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCC-EEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 1122 35666766543211 1 11 235678899999999999887763
No 50
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.8e-06 Score=77.53 Aligned_cols=164 Identities=15% Similarity=0.205 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|-++.++.|.+.+.- ..++-|.++|++|+|||+||+.+++.. ..+| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~---~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANF---IFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEehhhhcc-
Confidence 3467888888887766531 245788999999999999999999988 3332 2333332110
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHH-HHhcCCcEEEEEecCCCccc----------------cccccCCCC--C
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIF-KILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--S 271 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~ 271 (337)
.+...+ ......+. ..-...+++|++|+++.... +..+...+. .
T Consensus 254 ----------------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 001111 12222222 23346789999999985310 111111111 1
Q ss_pred CCCCCcEEEEeeCChhHHhh--ccC---CceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 272 RTSVSNKVVFTTREFGVCGQ--MEA---HRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
...+ ..||.||...+.... +.. ...+.++.-+.++-.++|+.++..-....+-++..+|+
T Consensus 317 ~~~~-vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 317 NLGQ-TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp CTTS-SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred CCCC-eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 1223 567777765543221 112 35688888888888889987764433233456766664
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.34 E-value=5.9e-06 Score=75.73 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=84.0
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|..++.. ...+.+.|+|.+|+|||+||+.+++.. ... .+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhc--
Confidence 4589999999999887732 235689999999999999999998876 222 23333322110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCC---CC-CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPI---PS-RTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l---~~-~~~ 274 (337)
.. ...........+...-...+.+|+||+++.... ...+...+ .. ...
T Consensus 187 ~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 011111112222222234668999999975410 01111101 11 112
Q ss_pred CCcEEEEeeCChhHH-hh-c-cCCceeecCCCCHHHHHHHHhHhhCC
Q 045709 275 VSNKVVFTTREFGVC-GQ-M-EAHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 275 g~s~IiiTtr~~~v~-~~-~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
. ..||.||...... .. . .....+.++..+.++..+++...+..
T Consensus 252 ~-v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 252 R-VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp C-EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred C-EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 2 4555566543221 11 1 12346889999999999999888754
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.33 E-value=9.8e-06 Score=71.21 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=85.0
Q ss_pred CccccchhhHHHHHHHHhc------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLME------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh--
Confidence 4589999999998887632 235688999999999999999999876 222 22333322110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCcccc-------------cccc---CCCCCC--
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVDL-------------DQVG---LPIPSR-- 272 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~l~---~~l~~~-- 272 (337)
. ...........+.. ....++.+|+||+++....- ..+. ..++..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112223333222 33457789999999754210 0110 111111
Q ss_pred CCCCcEEEEeeCChh-----HHhhccCCceeecCCCCHHHHHHHHhHhhC
Q 045709 273 TSVSNKVVFTTREFG-----VCGQMEAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
..+ ..||.||.... +... ....+.++..+.++...++...+.
T Consensus 157 ~~~-v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 157 GDR-IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp --C-EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHG
T ss_pred CCc-EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHH
Confidence 123 45666776543 2222 235677888888888888877653
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.32 E-value=8.9e-06 Score=81.08 Aligned_cols=154 Identities=13% Similarity=0.213 Sum_probs=91.1
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---CcEEEEE-EecCccCHHHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWV-VVSRDLQLEKIQESIAK 219 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv-~~~~~~~~~~~~~~i~~ 219 (337)
..++||+.++..+.+.|.......+.|+|.+|+|||++|+.+++......-. ....+|. +.+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H------
Confidence 4589999999999999987777778999999999999999998876211111 1222221 1111 0
Q ss_pred HhCCCCccccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCcc--------c---cccccCCCCCCCCCCcEEEEeeCChh
Q 045709 220 KIGLFNESWKNKSMQEKAQEIFKILS-KKKFVLLLDDIWELV--------D---LDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
+... . .....+.....+...+. .++.+|+|||++... . ...+...+. . .. ..+|.+|....
T Consensus 254 -~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~-~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GK-IRVIGSTTYQE 326 (758)
T ss_dssp --CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CC-CEEEEEECHHH
T ss_pred -hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CC-eEEEEEeCchH
Confidence 0000 0 11233444444444443 457899999998541 1 112223232 2 23 56776666443
Q ss_pred HHhhc-------cCCceeecCCCCHHHHHHHHhHhh
Q 045709 288 VCGQM-------EAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 288 v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
....+ .....+.+++.+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 22111 111368899999999988887654
No 54
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.31 E-value=7.4e-06 Score=73.44 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHhcCC-CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCC-----
Q 045709 150 QLTFDRVWRCLMEEH-AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGL----- 223 (337)
Q Consensus 150 ~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----- 223 (337)
++..+.+.+.+.+++ .+.+.++|++|+|||++|+.+.+.... ..... ............+......
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~-~~~~~-------~~~c~~c~~c~~~~~~~~~d~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC-QQPQG-------HKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC-SSCBT-------TBCCSCSHHHHHHHHTCCTTEEEE
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC-CCCCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 556677777777655 457999999999999999999987721 11100 0000000001111110000
Q ss_pred CCc-cccCCCHHHHHHHHHHHh-----cCCcEEEEEecCCCcc--ccccccCCCCCCCCCCcEEEEeeCChh-HHhhc-c
Q 045709 224 FNE-SWKNKSMQEKAQEIFKIL-----SKKKFVLLLDDIWELV--DLDQVGLPIPSRTSVSNKVVFTTREFG-VCGQM-E 293 (337)
Q Consensus 224 ~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~g~s~IiiTtr~~~-v~~~~-~ 293 (337)
... .-.....++ .+.+.+.+ .+++-++|+|+++... ..+.+...+..-..+ +.+|++|.+.+ +...+ +
T Consensus 80 ~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~-~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 80 APEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE-TWFFLATREPERLLATLRS 157 (334)
T ss_dssp CCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTT-EEEEEEESCGGGSCHHHHT
T ss_pred eccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCC-eEEEEEeCChHhCcHHHhh
Confidence 000 001112222 22233333 2467799999998652 223332223222334 77777776643 22222 2
Q ss_pred CCceeecCCCCHHHHHHHHhHhh
Q 045709 294 AHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 294 ~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
....+++.+++.++..+.+.+..
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC
T ss_pred cceeeeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999998876
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.31 E-value=3.9e-07 Score=71.42 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887753 334567899999999999999998865
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.30 E-value=8e-06 Score=76.43 Aligned_cols=164 Identities=14% Similarity=0.131 Sum_probs=91.0
Q ss_pred CccccchhhHHHHHHHHh---cC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---EE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.++.++++.+.+. .. ..+-+.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 457898887777665542 21 23458899999999999999999987 3333 23333321110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 273 (337)
+...........+.......+.+|+||+++.... +..+...+. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0011111222333444456789999999965311 112211110 112
Q ss_pred CCCcEEEEeeCChhHHh-h-cc---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHH
Q 045709 274 SVSNKVVFTTREFGVCG-Q-ME---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELA 331 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~ 331 (337)
.+ ..||.||...+... . .. ....+.+++.+.++-.++|..++.......+.++..++
T Consensus 153 ~~-viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la 214 (476)
T 2ce7_A 153 EG-IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIA 214 (476)
T ss_dssp GT-EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred CC-EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 34 56777777655422 1 11 23477888888888888888776543322233354444
No 57
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.2e-06 Score=75.30 Aligned_cols=164 Identities=17% Similarity=0.216 Sum_probs=94.6
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|-++.++.|.+.+.- ...+-|.++|++|+|||+||+.+++.. ...| +.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCe---EEEEhHHhhc--
Confidence 467888888888765421 356788999999999999999999988 3333 2333321100
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHH-HHhcCCcEEEEEecCCCccc----------------cccccCCCC--CC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIF-KILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SR 272 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 272 (337)
.+...+ +...+.+. ..-...+++|++|+++.... ...+...+. ..
T Consensus 282 ---------------k~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ---------------KYVGEG-ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ---------------CSSSHH-HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ---------------ccCCHH-HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 001111 12222222 23346789999999985411 011111110 11
Q ss_pred CCCCcEEEEeeCChhHHh-h-c---cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCG-Q-M---EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
..+ ..||.||....... . . .-...+.++..+.++-.++|+.++..-....+-++..+|+.
T Consensus 346 ~~~-ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~ 410 (467)
T 4b4t_H 346 RGN-IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRL 410 (467)
T ss_dssp TTT-EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHH
T ss_pred CCc-EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 223 45566665543311 1 1 23567899999999999999888755443444567777653
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=2e-05 Score=67.78 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHHHh---c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..++.+.+.+. . ...+-+.|+|++|+||||||+.+++.. ...| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 458898887777655432 1 123458899999999999999999887 2332 3333221100
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SRT 273 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 273 (337)
.............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00111222222333333445678999999853210 011110010 112
Q ss_pred CCCcEEEEeeCChhH-Hhhc-c---CCceeecCCCCHHHHHHHHhHhhCC
Q 045709 274 SVSNKVVFTTREFGV-CGQM-E---AHRSFKVECLRYDDAWKLFEQKVGA 318 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v-~~~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~ 318 (337)
.+ ..||.||..... ...+ . ....+.++..+.++-.+++..++..
T Consensus 149 ~~-~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 149 EG-IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp SC-EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CC-EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 23 466667765432 1111 1 2346788888888888888777643
No 59
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.25 E-value=5.3e-06 Score=73.19 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=38.5
Q ss_pred CccccchhhHHHHHHHHhc--------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME--------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|++..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999988877754 235678899999999999999999887
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.25 E-value=6.2e-06 Score=82.18 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC--cEEEEEEecCccCHHHHHHHHHHHh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF--DFVIWVVVSRDLQLEKIQESIAKKI 221 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l 221 (337)
..++||+.++..+...|......-+.++|++|+|||++|+.+++........+ ...-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 35899999999999999876666788999999999999999998862211111 0111111111
Q ss_pred CCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh------hc-cC
Q 045709 222 GLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG------QM-EA 294 (337)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~------~~-~~ 294 (337)
+... ...........+......++.+|++| ........+...+. .+..++|.||....... .+ ..
T Consensus 245 g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 GTKY---RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred cccc---cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000 00000111222233334678899999 22222222333332 23256666665444111 00 11
Q ss_pred CceeecCCCCHHHHHHHHhHhhC
Q 045709 295 HRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 295 ~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
...+.+++.+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 25689999999999999986653
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.24 E-value=5.3e-07 Score=73.29 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHhc---CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCC
Q 045709 149 LQLTFDRVWRCLME---EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFN 225 (337)
Q Consensus 149 r~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 225 (337)
....++.+.+++.+ .....+.|+|++|+|||||++.+++......+ + .+.++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCch
Confidence 34445555555443 24678999999999999999999988721111 1 12333 34444544444332111
Q ss_pred ccccCCCHHHHHHHHHHHhcCCcEEEEEecCCC--ccccc--cccCCCCC-CCCCCcEEEEeeCC
Q 045709 226 ESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWE--LVDLD--QVGLPIPS-RTSVSNKVVFTTRE 285 (337)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~l~~-~~~g~s~IiiTtr~ 285 (337)
. . . +...+. +.-+|||||++. ...|. .+...+.. ...+ ..+|+||..
T Consensus 91 ----~-~--~----~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~-~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----D-T--K----FLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNL-KSTIITTNY 142 (180)
T ss_dssp ----C-S--H----HHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTT-CEEEEECCC
T ss_pred ----H-H--H----HHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcC-CCEEEEcCC
Confidence 0 0 1 112222 566999999974 22332 11111111 1135 688888874
No 62
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.9e-05 Score=72.19 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=94.1
Q ss_pred ccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|-++.++.|.+.+.- ...+-|.++|++|+|||.||+.+++.. ...| +.++.+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhh---
Confidence 467888888887766531 245779999999999999999999988 3333 222222110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCccc----------------cccccCCC--CCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELVD----------------LDQVGLPI--PSR 272 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l--~~~ 272 (337)
. .+... .+.....+.. .-...+++|++|+++.... +..+...+ ...
T Consensus 254 -----------s---k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 -----------Q---KYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -----------C---SSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -----------h---ccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 00111 1222233332 2245789999999975311 11111111 011
Q ss_pred CCCCcEEEEeeCChhHHhh-c-c---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCGQ-M-E---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
..+ ..||.||...+.... + . -+..+.++.-+.++-.++|+.++..-....+-++..+|+.
T Consensus 319 ~~~-ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~ 383 (437)
T 4b4t_I 319 RGD-VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTT 383 (437)
T ss_dssp SSS-EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHH
T ss_pred CCC-EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 223 456667765554221 1 1 1346788888999989999888755443445567777653
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.22 E-value=7.1e-06 Score=72.52 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=43.4
Q ss_pred ccccchhhHHHHHHHHhcC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 145 TVVGLQLTFDRVWRCLMEE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 4789999988888877542 235899999999999999999998873 2222345555544
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.3e-05 Score=72.21 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=88.7
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|-++.++.|.+.+.- ...+-+.++|++|+|||+||+.+++.. ..+| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---EEEecchhhc-
Confidence 3567888888888776531 245678999999999999999999988 3333 2333332110
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SR 272 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 272 (337)
.+.+.+...+...+...-...+++|++|+++.... +..+...+. ..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 00111111122222223346789999999863210 111111111 11
Q ss_pred CCCCcEEEEeeCChhHHh-h-cc---CCceeecCCCC-HHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 273 TSVSNKVVFTTREFGVCG-Q-ME---AHRSFKVECLR-YDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~-~-~~---~~~~~~l~~L~-~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
..+ -.||.||...+... . .. -...+.++.++ .++-..+|..++..-....+.++..+|+.
T Consensus 309 ~~~-v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~ 374 (428)
T 4b4t_K 309 STN-VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIR 374 (428)
T ss_dssp SCS-EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHH
T ss_pred CCC-EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHH
Confidence 233 45666776544311 1 11 23467787664 45555666665533332334567777653
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.14 E-value=4.5e-06 Score=72.20 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..+..+.+.+.. .....+.|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3478999888888776643 334567899999999999999998876
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.11 E-value=4.6e-06 Score=73.78 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3589999999988887754 345667899999999999999998866
No 67
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=9.3e-06 Score=74.85 Aligned_cols=165 Identities=16% Similarity=0.189 Sum_probs=92.3
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|-++.++.|.+.+.. ...+-|.++|++|+|||.||+.+++.. ..+| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEE---EEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCE---EEEehhhhhh-
Confidence 3467888888888766421 246778999999999999999999988 3332 2233322100
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHH-HhcCCcEEEEEecCCCcc-------c---------cccccCCCCC--
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFK-ILSKKKFVLLLDDIWELV-------D---------LDQVGLPIPS-- 271 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------~---------~~~l~~~l~~-- 271 (337)
.+.+. .+...+.+.. .-...+++|++|+++... . ...+...+..
T Consensus 254 ----------------~~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 00111 1222222222 223568999999987420 0 1112111111
Q ss_pred CCCCCcEEEEeeCChhHHh-hc-c---CCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 272 RTSVSNKVVFTTREFGVCG-QM-E---AHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
...+ -.||.||...+... .+ . -...+.++..+.++-.++|+.++..-....+-++..+|+.
T Consensus 317 ~~~~-ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~ 382 (434)
T 4b4t_M 317 SDDR-VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARS 382 (434)
T ss_dssp SSCS-SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHH
T ss_pred CCCC-EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHh
Confidence 1123 35555776554322 11 1 2356888888998888888877633222334467777653
No 68
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.10 E-value=1.2e-06 Score=68.97 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 205 (337)
....+.|+|.+|+|||||++.+++... . ..+ .+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHH
Confidence 567899999999999999999999873 2 222 25565544
No 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.03 E-value=1.5e-05 Score=65.72 Aligned_cols=113 Identities=25% Similarity=0.176 Sum_probs=60.6
Q ss_pred hHHHHHHHHhcC----CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc
Q 045709 152 TFDRVWRCLMEE----HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES 227 (337)
Q Consensus 152 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (337)
.++.+..++... ....+.|+|++|+|||+||+.+++... .....++|++++ .+...+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~----- 102 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQ----- 102 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhc-----
Confidence 445555555443 127889999999999999999999883 223345566543 33444433221
Q ss_pred ccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--ccccc--ccC-CCCCC-CCCCcEEEEeeCCh
Q 045709 228 WKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDLDQ--VGL-PIPSR-TSVSNKVVFTTREF 286 (337)
Q Consensus 228 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~g~s~IiiTtr~~ 286 (337)
.......... +.. .-+|||||++.. ..|.. +.. .+... ..+ .++|+||...
T Consensus 103 --~~~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~-~~~i~tsn~~ 159 (202)
T 2w58_A 103 --DQTMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFEN-LPTFFTSNFD 159 (202)
T ss_dssp ---CCCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTT-CCEEEEESSC
T ss_pred --cchHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCC-CCEEEEcCCC
Confidence 1112222222 222 239999999653 33322 211 11111 234 5788888743
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.03 E-value=2.1e-06 Score=67.02 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=34.2
Q ss_pred ccccchhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 478999988888887653 334557899999999999999997654
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.00 E-value=4.4e-06 Score=83.26 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=81.5
Q ss_pred CccccchhhHHHHHHHHhcC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLMEE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQ 214 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 214 (337)
..++|.+..+..+...+... ....+.++|++|+|||++|+.+++... ......+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45799999998888877531 123699999999999999999998873 222234455554321100
Q ss_pred HHHHHHhCCCCccccCCCHHHHHHHHHHHhc-CCcEEEEEecCCCccc--cccccCC-----CCC------CCCCCcEEE
Q 045709 215 ESIAKKIGLFNESWKNKSMQEKAQEIFKILS-KKKFVLLLDDIWELVD--LDQVGLP-----IPS------RTSVSNKVV 280 (337)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~--~~~l~~~-----l~~------~~~g~s~Ii 280 (337)
..+... +...+. ....+|+||+++.... ...+... +.. .... ..||
T Consensus 565 ---------------~~~~~~----l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~-~~iI 624 (758)
T 3pxi_A 565 ---------------STSGGQ----LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN-TILI 624 (758)
T ss_dssp ---------------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT-CEEE
T ss_pred ---------------ccccch----hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCC-eEEE
Confidence 000011 111221 2345899999975421 1111111 110 1123 6888
Q ss_pred EeeCC-----------------hhHHhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 281 FTTRE-----------------FGVCGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 281 iTtr~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
+||.. +.+...+ ...+.+++|+.++-..++...+
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 88873 1112222 3578999999999888776544
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.97 E-value=5.4e-05 Score=74.98 Aligned_cols=165 Identities=12% Similarity=0.151 Sum_probs=93.7
Q ss_pred ccccchhhHHHHHHHHh----c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 145 TVVGLQLTFDRVWRCLM----E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+| +.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~---~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEE---EEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeE---EEEEhH------
Confidence 46788888877776642 1 245679999999999999999999877 3332 333322
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc-------------cccccCCCC--CCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD-------------LDQVGLPIP--SRTSVS 276 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~g~ 276 (337)
++. +. +...+...+...+.......+++|+||+++.... ..++...+. ....+
T Consensus 273 ~l~-------sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~- 340 (806)
T 3cf2_A 273 EIM-------SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH- 340 (806)
T ss_dssp HHH-------SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC-
T ss_pred Hhh-------cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC-
Confidence 111 00 0111122222233334456789999999975421 111111110 01122
Q ss_pred cEEEEeeCChh-HHhhc----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHHH
Q 045709 277 NKVVFTTREFG-VCGQM----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAET 333 (337)
Q Consensus 277 s~IiiTtr~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~ 333 (337)
-.||-||...+ +-..+ .-...++++..+.++-.++|+.+........+.++..+|+.
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~ 402 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHh
Confidence 34455555433 22212 12457889999999999999887755443445667777654
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.94 E-value=0.00028 Score=61.28 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=84.0
Q ss_pred CccccchhhHHHHHHHHh---c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..+..+.+... . .-.+-+.|+|++|+|||||++.++... .. ..+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------
Confidence 468898877666654432 1 112238999999999999999999876 22 22333221
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcc------------c----cccccCCCCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELV------------D----LDQVGLPIPSRTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~~ 274 (337)
.+ .... .. ........+.+.. ...+.++++||++... . ...+...+..+..
T Consensus 108 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00 0111122222222 3457899999995321 0 1112111221111
Q ss_pred C-CcEEEEeeCChhHHh-----hccCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHH
Q 045709 275 V-SNKVVFTTREFGVCG-----QMEAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELA 331 (337)
Q Consensus 275 g-~s~IiiTtr~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~ 331 (337)
. ...++.||....+.. .......+.++..+.++-.+++..++.......+..+..++
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la 238 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 238 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHH
Confidence 1 023444565544321 11234578899999998888888776433222233344443
No 74
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.93 E-value=8.6e-05 Score=74.25 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=89.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.+++|.+..++.|.+++.. .....+.|+|++|+||||||+.+++.. ...| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3578999888888877642 245679999999999999999998876 2322 3333211
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCCCCCC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIPSRTS 274 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~~~ 274 (337)
+ .... ...........+.......+.++++|+++.... +..+...+.. ..
T Consensus 274 --l--------~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~ 339 (806)
T 1ypw_A 274 --I--------MSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA 339 (806)
T ss_dssp --H--------SSSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TS
T ss_pred --h--------hhhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cc
Confidence 1 0000 111111222223333345678999999954311 1111111111 12
Q ss_pred CCcEEEEeeCChh-HHhhc----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHH
Q 045709 275 VSNKVVFTTREFG-VCGQM----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELA 331 (337)
Q Consensus 275 g~s~IiiTtr~~~-v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~ 331 (337)
. ..+|.||.... +-..+ .....+.+...+.++-.+++...+..-.......+..++
T Consensus 340 ~-v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la 400 (806)
T 1ypw_A 340 H-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 400 (806)
T ss_dssp C-CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHH
T ss_pred c-EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHH
Confidence 2 45555665532 21111 122457888889999999998776443322333454444
No 75
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.92 E-value=0.00026 Score=61.46 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|.++.++.|.+.+.. .-.+-+.|+|++|+|||||++.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh
Confidence 3467877777777665421 112239999999999999999999876 22 2344443221100
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCcccc-------------ccccCCCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELVDL-------------DQVGLPIPSR--TS 274 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~-------------~~l~~~l~~~--~~ 274 (337)
...........+.+.. ...++++++|+++..... ..+...+..+ ..
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111122222222 346789999999753110 0111111111 12
Q ss_pred CCcEEEEeeCChhHHhhc-----cCCceeecCCCCHHHHHHHHhHhhCCC---CCCCCCChHHHHH
Q 045709 275 VSNKVVFTTREFGVCGQM-----EAHRSFKVECLRYDDAWKLFEQKVGAD---TLDSHPDIPELAE 332 (337)
Q Consensus 275 g~s~IiiTtr~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~---~~~~~~~l~~i~~ 332 (337)
. .-++.+|....+.... .-...+.++..+.++-.++|+...... ....+-++..++.
T Consensus 146 ~-~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 146 Q-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp C-EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred C-EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 2 3455667666553211 234678899999999999998776321 1123445666654
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.88 E-value=0.00019 Score=67.44 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=81.2
Q ss_pred CccccchhhHHHHHHHHh---cC---------CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---EE---------HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.++.+..+.+... .. -.+-+.|+|++|+||||||+.+++.. ... .+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHH--
Confidence 468998887776655432 21 12348999999999999999999876 222 23344332110
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhc----CCcEEEEEecCCCccc----------------cccccCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKILS----KKKFVLLLDDIWELVD----------------LDQVGLPIPS 271 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~~----------------~~~l~~~l~~ 271 (337)
.........+...++ ..+.++++|+++.... +..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111222333332 2358999999964310 1122111111
Q ss_pred C--CCCCcEEEEeeCChhHHhh--c---cCCceeecCCCCHHHHHHHHhHhhC
Q 045709 272 R--TSVSNKVVFTTREFGVCGQ--M---EAHRSFKVECLRYDDAWKLFEQKVG 317 (337)
Q Consensus 272 ~--~~g~s~IiiTtr~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~ 317 (337)
. ..+ ..|+.||....+... . .....+.++..+.++-.++|..++.
T Consensus 164 ~~~~~~-viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 164 FEKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCSSCC-CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred cccCcc-EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 1 122 345556666554221 1 1235788999999988888887663
No 77
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.86 E-value=0.00028 Score=60.29 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHh---c---------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 144 PTVVGLQLTFDRVWRCLM---E---------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
.+++|.+..+..+.+... . .-.+-+.|+|++|+|||||++.+++.. ... .+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~~---~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TCC---EEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 457888776665544332 1 112238999999999999999999876 222 2233221
Q ss_pred HHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh-cCCcEEEEEecCCCccc----------------cccccCCCCCCCC
Q 045709 212 KIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL-SKKKFVLLLDDIWELVD----------------LDQVGLPIPSRTS 274 (337)
Q Consensus 212 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~~~~ 274 (337)
.+ .... .. ........+.+.. ...+.++++|+++.... ...+...+..+..
T Consensus 84 ~~----~~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC-------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH-------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 00 0111222233332 24568999999953210 1122111111111
Q ss_pred -CCcEEEEeeCChhHHhh-c----cCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHH
Q 045709 275 -VSNKVVFTTREFGVCGQ-M----EAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELA 331 (337)
Q Consensus 275 -g~s~IiiTtr~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~ 331 (337)
...-++.||....+... + .....+.++..+.++-.+++...+.......+.++..++
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la 214 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 214 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH
Confidence 10234456665554221 1 124578899999998888888776432222233344444
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.83 E-value=0.00017 Score=68.83 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=78.2
Q ss_pred CccccchhhHHHHHHHHh------cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 144 PTVVGLQLTFDRVWRCLM------EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
.+++|.++....+.+.+. ......+.++|++|+||||||+.++... ...|. -++++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~---~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKFV---RISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEEE---EECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCeE---EEEecccchhhhhhhHH
Confidence 346887777776655432 1246789999999999999999999887 23322 22232221211111111
Q ss_pred HHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc------cccccCCCCCC---------------CCCC
Q 045709 218 AKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD------LDQVGLPIPSR---------------TSVS 276 (337)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~---------------~~g~ 276 (337)
....+. ........+ .......-+|+||+++.... ...+...+... ...
T Consensus 155 ~~~ig~--------~~~~~~~~~-~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~- 224 (543)
T 3m6a_A 155 RTYVGA--------MPGRIIQGM-KKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK- 224 (543)
T ss_dssp -----------------CHHHHH-HTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSS-
T ss_pred HHHhcc--------CchHHHHHH-HHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccc-
Confidence 111110 011111111 12222344889999986421 12222222110 022
Q ss_pred cEEEEeeCChh-----HHhhccCCceeecCCCCHHHHHHHHhHhh
Q 045709 277 NKVVFTTREFG-----VCGQMEAHRSFKVECLRYDDAWKLFEQKV 316 (337)
Q Consensus 277 s~IiiTtr~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 316 (337)
..||.||.... +...+ ..+.+++++.++-..++..+.
T Consensus 225 v~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CEEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eEEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 45666665432 23333 478999999999988888764
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.81 E-value=0.00016 Score=63.36 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999988
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=0.00016 Score=60.18 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCC---
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKS--- 232 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~--- 232 (337)
....++.|+|.+|+|||||+..++. . .-..++|++.....+...+.. +....+..... ....+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 3567999999999999999999987 3 123678888766555554432 33332221000 01111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecCCCc
Q 045709 233 MQEKAQEIFKILSKKKFVLLLDDIWEL 259 (337)
Q Consensus 233 ~~~~~~~l~~~l~~k~~LlVlDdv~~~ 259 (337)
.......++..+..+.-+||||.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 223444555555445779999998654
No 81
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=0.00019 Score=64.55 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|+|++|+|||||+..++.... ..-..++|++....++.. .+.+++...+.. ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 568999999999999999999988772 222357788877666543 455666543221 234566666666
Q ss_pred HHHhc-CCcEEEEEecCCCc
Q 045709 241 FKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~~ 259 (337)
...+. .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 65554 45669999998654
No 82
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=0.00035 Score=59.03 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----CCcEEEEEEecCccCHHHHHHHHHHHhCCCCc----c---ccCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE----S---WKNKS 232 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 232 (337)
...++.|+|.+|+|||||+..++..... .. .-..++|++....+....+ ..++..++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhC-chhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 5679999999999999999999886411 11 2357888887765444443 234455543210 0 01223
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEecCCCc
Q 045709 233 MQE---KAQEIFKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 233 ~~~---~~~~l~~~l~-~k~~LlVlDdv~~~ 259 (337)
..+ ....+...+. .+.-+||||++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 333 2333445553 46789999998654
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=9.4e-05 Score=62.11 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW--------------- 228 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------- 228 (337)
...++.|+|.+|+|||||++.++..... .-..++|+.... ....+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 5679999999999999999999876521 112456665543 3344433332 343221100
Q ss_pred ------cCCCHHHHHHHHHHHhc-CCcE--EEEEecCCCcc--c---cccccCCCCC--CCCCCcEEEEeeCCh
Q 045709 229 ------KNKSMQEKAQEIFKILS-KKKF--VLLLDDIWELV--D---LDQVGLPIPS--RTSVSNKVVFTTREF 286 (337)
Q Consensus 229 ------~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~~--~---~~~l~~~l~~--~~~g~s~IiiTtr~~ 286 (337)
...+..+....+...+. .+.- +||||.+.... + ...+...+.. ...+ ..||++|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccC
Confidence 11245555555555442 2444 99999986432 1 1111111111 1235 7899999876
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.61 E-value=9.1e-05 Score=74.74 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHHhcC---------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLMEE---------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.+..+..+...+... ....+.|+|++|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888887776431 22578999999999999999999887
No 85
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.58 E-value=0.00033 Score=62.98 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|+|.+|+|||||+..++.... ..-..++|++....++.. .+..++...+.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 568999999999999999999987762 223467888887765543 245555432211 223455555555
Q ss_pred HHHhc-CCcEEEEEecCCCc
Q 045709 241 FKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~~ 259 (337)
..... .+.-+||+|.+...
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGC
T ss_pred HHHHhcCCCCEEEEcChHhh
Confidence 55554 45679999998654
No 86
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.53 E-value=0.00081 Score=59.78 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCC---CCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (337)
...++.|+|.+|+|||||+..++....... ..-..++|++....++...+. .++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 567999999999999999999987752110 013578999988876666654 345556543210 012233
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEecCCC
Q 045709 234 Q---EKAQEIFKILS--KKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~---~~~~~l~~~l~--~k~~LlVlDdv~~ 258 (337)
+ +....+...+. .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 3 23445555554 4567999999864
No 87
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=0.00098 Score=58.50 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=59.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHH-HHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEK-AQEI 240 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l 240 (337)
..++.|+|.+|+|||||+.+++....+ ...-..++|++....++.. .+++++...+.. ...+.++. ...+
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 347899999999999999998877631 1123578999988777653 367777654322 23355555 4333
Q ss_pred HHH--h-cCCcEEEEEecCCCc
Q 045709 241 FKI--L-SKKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~--l-~~k~~LlVlDdv~~~ 259 (337)
... + .++.-|||+|.+...
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHhhccCceEEEEeccccc
Confidence 332 3 356789999998765
No 88
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.0011 Score=59.51 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----CCcEEEEEEecCccCHHHHHHHHHHHhCCCCc----c---ccCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----HFDFVIWVVVSRDLQLEKIQESIAKKIGLFNE----S---WKNKS 232 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 232 (337)
...++.|+|.+|+|||||+..++..... .. .-..++|++....++...+. .++..++.... . ....+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 5689999999999999999999887521 11 23578899988876666554 34455544321 0 01112
Q ss_pred H---HHHHHHHHHHhc---CCcEEEEEecCCCc
Q 045709 233 M---QEKAQEIFKILS---KKKFVLLLDDIWEL 259 (337)
Q Consensus 233 ~---~~~~~~l~~~l~---~k~~LlVlDdv~~~ 259 (337)
. .+....+...+. .+.-+||+|.+...
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2 233344455553 45679999998643
No 89
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.49 E-value=0.0002 Score=71.36 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhc---------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME---------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888777642 123478999999999999999999877
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.49 E-value=0.00053 Score=61.95 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|+|.+|+||||||..++.... ..-..++|++....++.. .+..++...+.. ...+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 567899999999999999999988762 122468899988766543 245555432211 234556666666
Q ss_pred HHHhc-CCcEEEEEecCCCc
Q 045709 241 FKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~~ 259 (337)
...++ ...-+||+|.+...
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTC
T ss_pred HHHHhcCCCCEEEEeChHHh
Confidence 66654 34569999998643
No 91
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.44 E-value=0.00016 Score=63.70 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEe--cCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVV--SRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
..+++.|+|++|+|||+||..++... . . .++|++. ... +.. ...+.+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-G--~---~VlyIs~~~eE~-------------v~~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-G--G---KDKYATVRFGEP-------------LSG-----YNTDFNVFVDDIA 177 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-H--T---TSCCEEEEBSCS-------------STT-----CBCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-C--C---CEEEEEecchhh-------------hhh-----hhcCHHHHHHHHH
Confidence 45678899999999999999998752 1 1 2345555 221 010 1134566666677
Q ss_pred HHhcCCcEEEEEecCCCc
Q 045709 242 KILSKKKFVLLLDDIWEL 259 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~ 259 (337)
+.+...+ +||+|++...
T Consensus 178 ~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHCS-EEEEECCTTT
T ss_pred HHHhhCC-EEEEeccccc
Confidence 7776666 9999999754
No 92
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.43 E-value=0.00047 Score=62.08 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|.|.+|+||||||..++.... ..-..++|++....++.. .+..++...+.+ ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 567999999999999999999988763 122368899887766543 245555432211 122445555555
Q ss_pred HHHhc-CCcEEEEEecCCCc
Q 045709 241 FKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~~ 259 (337)
..... .+.-+||+|.+...
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGC
T ss_pred HHHHhccCCCEEEEcCHHHh
Confidence 44432 45569999987543
No 93
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.42 E-value=8.8e-05 Score=60.54 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC---ccCHHHHHHHHHHHhCCC----Cccc--cCC---
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR---DLQLEKIQESIAKKIGLF----NESW--KNK--- 231 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~----~~~~--~~~--- 231 (337)
....|.|++.+|.||||+|--..-+.. ++-..+.++.... ......++.. ++.. ...+ ...
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcH
Confidence 346777888888999999998887772 3333455554333 2233333333 3210 0011 111
Q ss_pred ----CHHHHHHHHHHHhcCCcE-EEEEecCCCc-----cccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 232 ----SMQEKAQEIFKILSKKKF-VLLLDDIWEL-----VDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 232 ----~~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
........+++.+.+.+| |||||++-.. ...+.+...+...... ..||+|+|+..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ap 164 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCCc
Confidence 112234455566666555 9999998432 2233333333333344 79999999853
No 94
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.42 E-value=5.2e-05 Score=63.57 Aligned_cols=112 Identities=15% Similarity=-0.030 Sum_probs=61.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
.+..++.|+|..|+||||++..+.++.. .+-..++.+....... ....++..++...+.....+..+....+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 3567999999999999999999888872 2222344443332211 122344445543322222334445555555
Q ss_pred HhcCCcE-EEEEecCCCc--cccccccCCCCCCCCCCcEEEEeeC
Q 045709 243 ILSKKKF-VLLLDDIWEL--VDLDQVGLPIPSRTSVSNKVVFTTR 284 (337)
Q Consensus 243 ~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~g~s~IiiTtr 284 (337)
.+.+.++ +||+|++... +.++.+ ..+.+ .+ -.||+|-+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~g-i~Vil~Gl 124 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVA-NILAE--NG-FVVIISGL 124 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TT-CEEEEECC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CC-CeEEEEec
Confidence 4444444 9999999653 222222 11212 24 67888887
No 95
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.42 E-value=0.00068 Score=57.42 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997654
No 96
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.38 E-value=0.00037 Score=65.06 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHH---hcC--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCL---MEE--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.++.++.+..++ ... ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877655443 332 34578899999999999999999988
No 97
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.35 E-value=0.0026 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999997765
No 98
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.29 E-value=0.0006 Score=67.56 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=77.8
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
.++.|.++.++.|.+.+.- ...+-+.++|++|+|||.||+.+++.. ...| +.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f-----~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANF-----ISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEE-----EECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCce-----EEec----c
Confidence 4466778777777665431 134557899999999999999999987 2222 2222 2
Q ss_pred HHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHhcCCcEEEEEecCCCccc----------------cccccCCCC--CC
Q 045709 211 EKIQESIAKKIGLFNESWKNKSMQEKAQEIFKILSKKKFVLLLDDIWELVD----------------LDQVGLPIP--SR 272 (337)
Q Consensus 211 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 272 (337)
.++ +... ...+...+.+.+...-+..+++|+||+++.... ..++...+. ..
T Consensus 545 ~~l----~s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PEL----LTMW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHH----HTTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred chh----hccc-------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 222 1111 223333333333333356789999999975311 111111111 11
Q ss_pred CCCCcEEEEeeCChhH-----HhhccCCceeecCCCCHHHHHHHHhHhhCCCCCCCCCChHHHHH
Q 045709 273 TSVSNKVVFTTREFGV-----CGQMEAHRSFKVECLRYDDAWKLFEQKVGADTLDSHPDIPELAE 332 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~ 332 (337)
..+ --||-||..... ...-.-...+.++.-+.++-.++|+.+........+-++..+|+
T Consensus 614 ~~~-V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~ 677 (806)
T 3cf2_A 614 KKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp SSS-EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------
T ss_pred CCC-EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 122 223335543332 11112346777877777777778876664332222334444443
No 99
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.28 E-value=0.0015 Score=57.98 Aligned_cols=94 Identities=14% Similarity=0.241 Sum_probs=59.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC-----------CCCC--cEEEEEEecCccCHHHHHHHHHHHhCCCCcc---
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT-----------PNHF--DFVIWVVVSRDLQLEKIQESIAKKIGLFNES--- 227 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 227 (337)
...++.|+|.+|+|||+||..++...... .+.. ..++|++....++...+. .++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 56899999999999999999998763110 1111 578999988877666655 345556543210
Q ss_pred ----ccCCCHH---HHHHHHHHHhcC--CcEEEEEecCCC
Q 045709 228 ----WKNKSMQ---EKAQEIFKILSK--KKFVLLLDDIWE 258 (337)
Q Consensus 228 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~~ 258 (337)
....+.+ +....+...+.. +.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 1122333 234455555543 456999999854
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.26 E-value=0.0019 Score=53.96 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCC---CCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTP---NHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (337)
...+++|+|++|+|||||++.++....... ......+|+.......... ...+.+..+..... ....+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 568999999999999999999987541100 1234678887655433333 23344444332110 011111
Q ss_pred H---HHHHHHHHHh------cCCcEEEEEecCCC
Q 045709 234 Q---EKAQEIFKIL------SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~---~~~~~l~~~l------~~k~~LlVlDdv~~ 258 (337)
. .....+...+ ..++-+||||+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1123333333 34677999998865
No 101
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.21 E-value=0.0033 Score=57.41 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=56.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccC---CCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCcc-------ccCCCH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDT---PNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNES-------WKNKSM 233 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 233 (337)
...++.|+|.+|+|||||+..++-..... ...-..++|++....+....+ ..++..++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 56899999999999999999876443110 113356889887766555543 3466666543210 012222
Q ss_pred HH---HHHHHHHHh-cCCcEEEEEecCCC
Q 045709 234 QE---KAQEIFKIL-SKKKFVLLLDDIWE 258 (337)
Q Consensus 234 ~~---~~~~l~~~l-~~k~~LlVlDdv~~ 258 (337)
.. ....+...+ ..+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22 223333333 34677999998754
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.19 E-value=0.00048 Score=60.83 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHhcC---CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 150 QLTFDRVWRCLMEE---HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 150 ~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+..+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555565542 25788999999999999999999987
No 103
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00029 Score=62.97 Aligned_cols=46 Identities=28% Similarity=0.272 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHhc-----CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME-----EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4578988877777666643 234679999999999999999999987
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.14 E-value=0.00061 Score=56.07 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHHhc---CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 148 GLQLTFDRVWRCLME---EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|++.++.|.+.+.. ....+++|.|.+|+|||||++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355667777777764 356799999999999999999998766
No 105
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.09 E-value=0.0053 Score=55.18 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=70.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CC-----------------cEEEEEEecC----ccCH---------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HF-----------------DFVIWVVVSR----DLQL--------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f-----------------~~~~wv~~~~----~~~~--------- 210 (337)
....+++|+|++|+|||||++.+..-.....+ .| ..+.++.-.. ..++
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 46789999999999999999999764410000 00 0122332110 1111
Q ss_pred ---------HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCC--C
Q 045709 211 ---------EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--R 272 (337)
Q Consensus 211 ---------~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~ 272 (337)
.+-..+++..++... ......+..+.++. |.+.|..++-+|++|+.-+..+.. .+...+.. .
T Consensus 132 ~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 132 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211 (366)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 112334555555532 11244555555443 667788889999999986643311 11111111 1
Q ss_pred CCCCcEEEEeeCChhHHhh
Q 045709 273 TSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~~ 291 (337)
..| ..||++|++-+++..
T Consensus 212 ~~g-~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 212 RLG-LTILLITHEMDVVKR 229 (366)
T ss_dssp HSC-CEEEEEESCHHHHHH
T ss_pred hCC-CEEEEEecCHHHHHH
Confidence 235 789999999776544
No 106
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.08 E-value=0.00053 Score=56.74 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 151 LTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 151 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++.|.+.+.. .+..+++|+|++|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556565543 457899999999999999999998877
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.08 E-value=0.0027 Score=56.98 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=55.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---CcEEEEEEecCccCHHHHHHHHHHHhCCCCcc------c-cCCC-
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSRDLQLEKIQESIAKKIGLFNES------W-KNKS- 232 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~-~~~~- 232 (337)
...++.|+|.+|+|||||+..++......... -..++|++....+....+ ..+.+..+..... . ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 67899999999999999999998876211001 124588887665433333 3344444332100 0 1111
Q ss_pred --HHHHHHHHHHHhc------CCcEEEEEecCCCc
Q 045709 233 --MQEKAQEIFKILS------KKKFVLLLDDIWEL 259 (337)
Q Consensus 233 --~~~~~~~l~~~l~------~k~~LlVlDdv~~~ 259 (337)
..+....+...+. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 2233444555554 46789999998654
No 108
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.01 E-value=0.0046 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.00 E-value=0.00013 Score=65.83 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=64.0
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHH
Q 045709 162 EEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIF 241 (337)
Q Consensus 162 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 241 (337)
.....+++|+|++|+|||||.+.+...... ..-..++.+.-...+.... ....-...............+.
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~--~~~~~i~t~ed~~e~~~~~-------~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN--TKYHHILTIEDPIEFVHES-------KKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCC-------SSSEEEEEEBTTTBSCHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccC--CCCcEEEEccCcHHhhhhc-------cccceeeeeeccccCCHHHHHH
Confidence 345669999999999999999998776621 1111222221111110000 0000000000011122344788
Q ss_pred HHhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 242 KILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 242 ~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
..|...+=+|++|++.+.+.++.+... ...| ..||+||+..+...
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~---~~~G-~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTA---AETG-HLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHH---HHTT-CEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHH---HhcC-CEEEEEEccChHHH
Confidence 888889999999999876555543222 1235 67999998866543
No 110
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=5.7e-05 Score=75.54 Aligned_cols=46 Identities=26% Similarity=0.245 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhc-------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME-------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++.|.++..+.|.+.+.- .....+.++|++|+|||+||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4467888888887776542 134568899999999999999999987
No 111
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.94 E-value=0.0034 Score=54.94 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
+..+++++|.+|+||||++..++..+....+ ..+..+..... ....+.+.......+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 4679999999999999999999887721122 23555554332 2233333333333333221 1223333332233
Q ss_pred HhcCCcEEEEEec
Q 045709 243 ILSKKKFVLLLDD 255 (337)
Q Consensus 243 ~l~~k~~LlVlDd 255 (337)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3345788883
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.0065 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..++.++|.+|+||||++..++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 113
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0051 Score=54.33 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
....++.|.|.+|+|||||+..++.... ..+ ..++|++... +...+...+..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESSS--CHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECCC--CHHHHHHHHHH
Confidence 3567999999999999999999987762 222 5788887653 44444444443
No 114
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.91 E-value=0.0062 Score=53.14 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=30.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 205 (337)
....+++|+|.+|+|||||++.++..... ..-..++|++..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 46679999999999999999999887721 111246666543
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.91 E-value=4.5e-05 Score=62.13 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++.|+|+.|+||||++..++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999997777665
No 116
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.89 E-value=0.0048 Score=54.81 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=24.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|++|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998877
No 117
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.89 E-value=0.00061 Score=61.37 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=33.5
Q ss_pred HHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc
Q 045709 156 VWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD 207 (337)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 207 (337)
.++.+.. .....++|+|.+|+|||||++.+.+........+.+ +++-+...
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 3344433 467799999999999999999988765211123333 45666654
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.88 E-value=0.00067 Score=55.08 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
.+..+++|+|++|+|||||++.+...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999999999765
No 119
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0048 Score=54.19 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=49.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH--HHHHHHHHHHhCCCCcc-ccCCCHHHH-HHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL--EKIQESIAKKIGLFNES-WKNKSMQEK-AQE 239 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 239 (337)
...++.|+|.+|+||||++..++..+. ..-..+.++.... +.. .+-+...+...+...-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 467999999999999999999988772 1222345555432 222 12233445555432110 012223222 233
Q ss_pred HHHHhcCCcEEEEEecCC
Q 045709 240 IFKILSKKKFVLLLDDIW 257 (337)
Q Consensus 240 l~~~l~~k~~LlVlDdv~ 257 (337)
+...+..+.-++|+|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444454555588889764
No 120
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.0038 Score=52.58 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
...++.|.|.+|+|||||+..++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 5679999999999999999888766521 223577777554
No 121
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.85 E-value=0.00093 Score=59.44 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|++..+..+...+... ..+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35899999999888887654 468899999999999999998876
No 122
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.84 E-value=0.00089 Score=54.96 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.6
Q ss_pred hcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 161 MEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 161 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
......+|.|+|++|+|||||++.+....
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33567899999999999999999998877
No 123
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.83 E-value=0.00077 Score=55.37 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998766
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.83 E-value=0.00076 Score=54.07 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998876
No 125
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.78 E-value=0.00085 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.0009 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.|+|++|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999877
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00086 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+++.+...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 128
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.74 E-value=0.00085 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+++.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 544
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.72 E-value=0.00097 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||++.+....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 130
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.0011 Score=53.71 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|.|.|++|+||||+++.+....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998887
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.70 E-value=0.0009 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|+|+|++|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 132
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.69 E-value=0.0019 Score=58.23 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=36.7
Q ss_pred ccccchhhHHHHHHHHh-------------c--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLM-------------E--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899988888887772 1 134678999999999999999999877
No 133
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.67 E-value=0.006 Score=61.67 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=69.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhcc---CCCCCcEEEEEEec-----CccCH-----------HHHHHHHHHHhCCC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFD---TPNHFDFVIWVVVS-----RDLQL-----------EKIQESIAKKIGLF 224 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~-----~~~~~-----------~~~~~~i~~~l~~~ 224 (337)
...+++|+|.+|+|||||++.+...... ..... ...++.-. ...++ ..-...++..++..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~-~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTS-CEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccce-eEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 5678999999999999999999853100 00111 12222110 01111 22334566666663
Q ss_pred C----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc---ccccCCCCCCCCCCcEEEEeeCChhHHhh
Q 045709 225 N----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL---DQVGLPIPSRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 225 ~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~~~~g~s~IiiTtr~~~v~~~ 291 (337)
. ......+..+.++. |...|-.++-+|+||+--+..+. ..+...+.. .| ..||++|++......
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g-~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CG-ITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SC-SEEEEECSCHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CC-CEEEEEECCHHHHHH
Confidence 1 12245565554443 55666778889999997665332 112222222 35 789999998776544
No 134
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.66 E-value=0.0086 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..++.++|.+|+||||++..++..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998887
No 135
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.66 E-value=0.0068 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|.|.|++|+||+|.|+.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 136
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.65 E-value=0.00098 Score=59.60 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.+..+..+...+......-+.|+|.+|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589988866665444443333458899999999999999999876
No 137
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.64 E-value=0.0016 Score=61.21 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 34799999998888777654 578899999999999999998876
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.64 E-value=0.0014 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998765
No 139
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.63 E-value=0.0055 Score=66.16 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=58.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQE 239 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~ 239 (337)
.+.+.+.|+|++|+|||+||..+..... ..-..++|+++....+... +..++...+.+ ...+.++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1496 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHH
Confidence 3678999999999999999999988773 3334577888777665554 44555332111 22234455555
Q ss_pred HHHHh-cCCcEEEEEecCC
Q 045709 240 IFKIL-SKKKFVLLLDDIW 257 (337)
Q Consensus 240 l~~~l-~~k~~LlVlDdv~ 257 (337)
+.... ..+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 55554 3567899999995
No 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.63 E-value=0.0012 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|+|++|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 141
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.63 E-value=0.0013 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 142
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.62 E-value=0.0013 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.|.|+|++|+||||+++.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 143
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.61 E-value=0.027 Score=52.07 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=44.4
Q ss_pred HHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHH
Q 045709 156 VWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKK 220 (337)
Q Consensus 156 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 220 (337)
.++.|.. .+...++|+|.+|+|||+|+..+.+... ..+-+.++++-+.... ...++.+++...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3444433 4678899999999999999999988762 3344667777776654 455666777655
No 144
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.61 E-value=0.003 Score=57.22 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhc------------------------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLME------------------------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.+..++.|...+.. .....+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 478988888888766620 124568899999999999999999876
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.60 E-value=0.0016 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|.|++|+||||+++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998876
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.60 E-value=0.001 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++++|+|++|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.60 E-value=0.0013 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356799999999999999999998876
No 148
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.60 E-value=0.0026 Score=52.93 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 151 LTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 151 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+.+...+.......|.|+|.+|+|||||+..+....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334455555555567899999999999999999998876
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0012 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.59 E-value=0.0016 Score=53.76 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|++|+|||||++.+....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998876
No 151
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.017 Score=55.66 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCCc---cccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc------ccccCCCCCCCCCCcEEEEe
Q 045709 213 IQESIAKKIGLFNE---SWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL------DQVGLPIPSRTSVSNKVVFT 282 (337)
Q Consensus 213 ~~~~i~~~l~~~~~---~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~g~s~IiiT 282 (337)
-..+++..++.... .....+..+.+.. |...|..++-+|+||+--+..+. ..+...+.. .| ..||++
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~--~g-~tvi~v 277 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA--PT-KYVICV 277 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT--TT-CEEEEE
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh--CC-CEEEEE
Confidence 34556666665421 1244555554433 55666677889999987665332 222222322 35 678999
Q ss_pred eCChhHHhhc
Q 045709 283 TREFGVCGQM 292 (337)
Q Consensus 283 tr~~~v~~~~ 292 (337)
|++......+
T Consensus 278 tHdl~~~~~~ 287 (608)
T 3j16_B 278 EHDLSVLDYL 287 (608)
T ss_dssp CSCHHHHHHH
T ss_pred eCCHHHHHHh
Confidence 9987765543
No 152
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.57 E-value=0.0015 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|++|+|||||++.+...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999766
No 153
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.57 E-value=0.0012 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQI 185 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v 185 (337)
+..+++|+|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999953
No 154
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.0016 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+++.+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 155
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.54 E-value=0.0094 Score=52.14 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCcc-ccCCCHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNES-WKNKSMQEKAQEIFK 242 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 242 (337)
..++.++|.+|+||||++..++.... ..-..+.++...... .....+.......+...-. ....+..........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 67899999999999999999988772 122345555544321 2222233344444432110 012344444444444
Q ss_pred Hhc-CCcEEEEEecC
Q 045709 243 ILS-KKKFVLLLDDI 256 (337)
Q Consensus 243 ~l~-~k~~LlVlDdv 256 (337)
.+. ..-=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443 22236777754
No 156
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=54.01 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++|+|++|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 157
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.53 E-value=0.003 Score=55.11 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=34.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
.+..+|+|+|.+|+|||||++.+...+.........+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 35679999999999999999999877621000123444445544333334444443
No 158
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.53 E-value=0.0013 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|+|++|+|||||++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998876
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.53 E-value=0.0016 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998765
No 160
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0016 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+++.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999877
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.52 E-value=0.0015 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|+|++|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999998876
No 162
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.51 E-value=0.0016 Score=53.69 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456799999999999999999998765
No 163
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.51 E-value=0.0019 Score=50.94 Aligned_cols=27 Identities=41% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999998865
No 164
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.49 E-value=0.0017 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
.+++|+|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999763
No 165
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0025 Score=52.92 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 148 GLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 148 Gr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++..+.+...+......++.|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 334555555555555578899999999999999999998876
No 166
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.48 E-value=0.0086 Score=55.47 Aligned_cols=93 Identities=17% Similarity=0.308 Sum_probs=51.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCc----cccCCCHHHHH-
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNE----SWKNKSMQEKA- 237 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~- 237 (337)
+...++|+|.+|+|||||+..+..... ......++++.+.... ...++..++...-..... .....+.....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~ 227 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMR 227 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHH
Confidence 455789999999999999999988762 1222345666666543 344555545432110000 00111111111
Q ss_pred -----HHHHHHh---cCCcEEEEEecCCC
Q 045709 238 -----QEIFKIL---SKKKFVLLLDDIWE 258 (337)
Q Consensus 238 -----~~l~~~l---~~k~~LlVlDdv~~ 258 (337)
-.+.+++ +++..||++||+..
T Consensus 228 ~~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 228 VALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1223332 58899999999853
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.48 E-value=0.0013 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998876
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.005 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+...+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 169
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.47 E-value=0.011 Score=51.53 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=48.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC-HHHHHHHHHHHhCCCCccc-cCCCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ-LEKIQESIAKKIGLFNESW-KNKSMQEKAQEIF 241 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 241 (337)
...+++++|.+|+||||++..++.... ..-..+.++....... ....+..+....+...-.. ...+..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999999988772 1222345555432211 1112333444444432110 1234444443333
Q ss_pred HHh-cCCcEEEEEecC
Q 045709 242 KIL-SKKKFVLLLDDI 256 (337)
Q Consensus 242 ~~l-~~k~~LlVlDdv 256 (337)
..+ ..+.=++|+|..
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244457888976
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.46 E-value=0.0021 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.|.|++|+||||+++.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 171
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.002 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 172
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.45 E-value=0.0027 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHhc--------------CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLME--------------EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.++.+..|...+.. ...+-+.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888888666632 134568999999999999999999887
No 173
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.43 E-value=0.0035 Score=54.59 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 174
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.43 E-value=0.013 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|.+|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 175
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.42 E-value=0.02 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|.|.+|+|||||++.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35599999999999999999998776
No 176
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.42 E-value=0.0017 Score=51.92 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..|.|.|++|+||||+++.+...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998877
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.42 E-value=0.017 Score=51.44 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=56.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhC--------------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIG-------------------- 222 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-------------------- 222 (337)
....++.|.|.+|+||||||..++..... .-..++|++... +...+...++....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l 118 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRALSDLTSINMHDLESGRLDDDQWENL 118 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHH
Confidence 35679999999999999999999888732 334677776543 44455444433210
Q ss_pred -----------CCCccccCCCHHHHHHHHHHHhcC--CcEEEEEecCCC
Q 045709 223 -----------LFNESWKNKSMQEKAQEIFKILSK--KKFVLLLDDIWE 258 (337)
Q Consensus 223 -----------~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~ 258 (337)
..-......+..++...++...+. +.-+||+|-+..
T Consensus 119 ~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql 167 (338)
T 4a1f_A 119 AKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL 167 (338)
T ss_dssp HHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred HHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence 000011233566666666665433 567999997653
No 178
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.41 E-value=0.0044 Score=55.32 Aligned_cols=42 Identities=24% Similarity=0.217 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHh----cCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 148 GLQLTFDRVWRCLM----EEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 148 Gr~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+-+...+.+++.+. .+....|.|+|++|+||||+++.++...
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34445555555553 3455679999999999999999887755
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.41 E-value=0.0021 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|+|++|+||||+++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 180
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.39 E-value=0.0026 Score=56.66 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKI 243 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 243 (337)
...+++|+|.+|+|||||++.+..... .-...+.+.-......... -+.++. ... ........+...
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~~----~~~i~~----~~g-gg~~~r~~la~a 236 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKHH----KNYTQL----FFG-GNITSADCLKSC 236 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSSC----SSEEEE----ECB-TTBCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeeccccccc----hhEEEE----EeC-CChhHHHHHHHH
Confidence 356899999999999999999987661 2234444442221110000 000000 000 112233456667
Q ss_pred hcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChhHH
Q 045709 244 LSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFGVC 289 (337)
Q Consensus 244 l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~v~ 289 (337)
|..++-+|++|++.+.+.++.+. .+. .|+.-+|+||+..+..
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAGSSE 278 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECSSHH
T ss_pred hhhCCCEEEEcCCChHHHHHHHH-HHh---cCCCEEEEEEcccHHH
Confidence 77888899999998754444332 222 2312478888766543
No 181
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.39 E-value=0.0021 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 182
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.39 E-value=0.33 Score=44.98 Aligned_cols=92 Identities=8% Similarity=0.054 Sum_probs=55.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH-HhCCCC----------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK-KIGLFN---------------- 225 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~~~~---------------- 225 (337)
....++.|.|.+|+|||||+..++..... ..-..++|++... +...+...++. ..+...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~ 276 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKL 276 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHH
Confidence 35679999999999999999999887721 1223577777543 33444444321 111100
Q ss_pred --------------ccccCCCHHHHHHHHHHHhc-CCcEEEEEecCCC
Q 045709 226 --------------ESWKNKSMQEKAQEIFKILS-KKKFVLLLDDIWE 258 (337)
Q Consensus 226 --------------~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~ 258 (337)
......+..++...++.... .+.-+||+|.+..
T Consensus 277 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 277 TMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp HHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence 00122356666666666553 3566999998754
No 183
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.39 E-value=0.0022 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|.|++|+||||+++.+...+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998766
No 184
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0021 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|+|.|++|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.38 E-value=0.0019 Score=53.92 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998765
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.38 E-value=0.0023 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....|.|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999887
No 187
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0023 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++++|+|++|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998776
No 188
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.36 E-value=0.015 Score=55.82 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++..+++|+|++|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467799999999999999999997654
No 189
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.35 E-value=0.0019 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998876
No 190
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.35 E-value=0.021 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 191
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.34 E-value=0.0027 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.++|.|.|++|+||||.|+.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999887
No 192
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.33 E-value=0.0026 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|.|++|+||||+++.+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.32 E-value=0.0023 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
.+|+|+|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999977
No 194
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.32 E-value=0.0025 Score=56.19 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
....+++|+|.+|+|||||++.+..-.....+. ..+.++....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-PRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-CCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-CeEEEEecCc
Confidence 456799999999999999999998876211111 2355555443
No 195
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.32 E-value=0.018 Score=50.58 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|.+|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998876
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.31 E-value=0.0025 Score=53.20 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 356799999999999999999998876
No 197
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.31 E-value=0.0027 Score=53.84 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+|+|.|++|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 198
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.30 E-value=0.0026 Score=50.45 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|+|.|++|+||||+++.+...+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998876
No 199
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.30 E-value=0.026 Score=50.28 Aligned_cols=135 Identities=8% Similarity=-0.116 Sum_probs=78.7
Q ss_pred HHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHH
Q 045709 157 WRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEK 236 (337)
Q Consensus 157 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 236 (337)
.+.+.+.-.++..++|..|.||++.+..+..... ...|+....+......++.++..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~--------------------- 66 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFS--------------------- 66 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHH---------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHH---------------------
Confidence 3344434567999999999999999999987652 12332211122322333333322
Q ss_pred HHHHHH-HhcCCcEEEEEecCCC-c--cccccccCCCCCCCCCCcEEEEeeCC-------hhHHhhc-cCCceeecCCCC
Q 045709 237 AQEIFK-ILSKKKFVLLLDDIWE-L--VDLDQVGLPIPSRTSVSNKVVFTTRE-------FGVCGQM-EAHRSFKVECLR 304 (337)
Q Consensus 237 ~~~l~~-~l~~k~~LlVlDdv~~-~--~~~~~l~~~l~~~~~g~s~IiiTtr~-------~~v~~~~-~~~~~~~l~~L~ 304 (337)
.+.. -+.+++-++|+|+++. . ..++.+...+..-..+ +.+|++|.. ..+...+ +....++..+++
T Consensus 67 --~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~-~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 67 --LCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp --HHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTT-EEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred --HhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCC-eEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 2221 1335677889999876 3 3444454434332345 777766643 2343333 334678999999
Q ss_pred HHHHHHHHhHhhC
Q 045709 305 YDDAWKLFEQKVG 317 (337)
Q Consensus 305 ~~ea~~Lf~~~~~ 317 (337)
.++....+.+.+-
T Consensus 144 ~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 144 QAQLPRWVAARAK 156 (343)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888877777653
No 200
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.30 E-value=0.0029 Score=51.80 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|+|.|++|+||||+++.+...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
No 201
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.30 E-value=0.0018 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=18.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998876
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.29 E-value=0.0028 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|+|+|++|+||||+++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999997654
No 203
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.29 E-value=0.0054 Score=51.95 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHhc--CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 150 QLTFDRVWRCLME--EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 150 ~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+.++.+.+.. .....|.|.|++|+||||+|+.+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444443322 356789999999999999999998776
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.28 E-value=0.0031 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
.+..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35679999999999999999999763
No 205
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.25 E-value=0.0032 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|.|++|+||||+++.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 206
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.24 E-value=0.0032 Score=51.81 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|+|.|++|+||||+++.+...+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 207
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.24 E-value=0.0024 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|.|.|++|+||||+++.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 208
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0031 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.|.|++|+||||+++.+...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998877
No 209
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.23 E-value=0.003 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|+|+|++|+||||+++.+...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999998654
No 210
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.21 E-value=0.0032 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|.|++|+||||+|+.+...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 211
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=52.20 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 045709 166 GIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 212
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.21 E-value=0.023 Score=52.74 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=61.1
Q ss_pred HHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCC-------Ccc
Q 045709 157 WRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLF-------NES 227 (337)
Q Consensus 157 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~ 227 (337)
++.|.. .+...++|+|.+|+|||+|+..+.++.. ..+-+.++++-+.... ...++..++...-... ...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344433 4667899999999999999999998762 3445677888777654 4556666666542221 000
Q ss_pred ----ccCCCHH------HHHHHHHHHhc---CCcEEEEEecCC
Q 045709 228 ----WKNKSMQ------EKAQEIFKILS---KKKFVLLLDDIW 257 (337)
Q Consensus 228 ----~~~~~~~------~~~~~l~~~l~---~k~~LlVlDdv~ 257 (337)
..+.+.. ...-.+.++++ ++.+||++||+-
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0111111 12223345553 579999999985
No 213
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.20 E-value=0.0041 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|+|++|+||||+++.+...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 214
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.20 E-value=0.0035 Score=51.71 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|+|.|++|+||||+++.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 215
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.19 E-value=0.0033 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998875
No 216
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.18 E-value=0.0026 Score=53.32 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----------CC----------cEEEEEEecC----ccCHH--------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----------HF----------DFVIWVVVSR----DLQLE-------- 211 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~f----------~~~~wv~~~~----~~~~~-------- 211 (337)
...+++|+|++|+|||||++.+..-.....+ .. ..+.++.-.. ..++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 5679999999999999999998764310000 00 1133332111 11111
Q ss_pred ----------HHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCC
Q 045709 212 ----------KIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPS 271 (337)
Q Consensus 212 ----------~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~ 271 (337)
+-..++++.++... ......+..+.++. +...|-.++-+|+||+.-+..+.. .+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 188 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 12234455555432 11234555554443 556777888899999986543321 11111211
Q ss_pred CCCCCcEEEEeeCChhHHhhccCCceeec
Q 045709 272 RTSVSNKVVFTTREFGVCGQMEAHRSFKV 300 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~~~~~~~~~l 300 (337)
.| ..||++|++.+.+. + +++++.+
T Consensus 189 --~g-~tvi~vtHd~~~~~-~-~d~v~~l 212 (224)
T 2pcj_A 189 --GG-TSIVMVTHERELAE-L-THRTLEM 212 (224)
T ss_dssp --TT-CEEEEECSCHHHHT-T-SSEEEEE
T ss_pred --CC-CEEEEEcCCHHHHH-h-CCEEEEE
Confidence 25 78999999977653 2 3444443
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.003 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
+..+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 568999999999999999999884
No 218
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.17 E-value=0.003 Score=53.30 Aligned_cols=127 Identities=20% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC----------CC----------cEEEEEEecC----ccCHH-------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----------HF----------DFVIWVVVSR----DLQLE------- 211 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~f----------~~~~wv~~~~----~~~~~------- 211 (337)
....+++|+|++|+|||||++.+..-.....+ .+ ..+.|+.-.. ..++.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~ 108 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL 108 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH
Confidence 35679999999999999999999664410000 00 0133432111 01111
Q ss_pred --------------HHHHHHHHHhCCCC----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCC
Q 045709 212 --------------KIQESIAKKIGLFN----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPI 269 (337)
Q Consensus 212 --------------~~~~~i~~~l~~~~----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l 269 (337)
+...+++..++... ......+..+.++. +...|..++=+|+||+.-+..+.. .+...+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l 188 (235)
T 3tif_A 109 IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL 188 (235)
T ss_dssp HTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11223444445432 11234555555443 566777788899999986653311 111111
Q ss_pred CC--CCCCCcEEEEeeCChhHHh
Q 045709 270 PS--RTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 270 ~~--~~~g~s~IiiTtr~~~v~~ 290 (337)
.. ...| ..||++|++.+++.
T Consensus 189 ~~l~~~~g-~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 189 KKLNEEDG-KTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHHC-CEEEEECSCHHHHT
T ss_pred HHHHHHcC-CEEEEEcCCHHHHH
Confidence 11 1125 78999999988764
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.17 E-value=0.0035 Score=55.04 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|++|+|||||++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.15 E-value=0.003 Score=51.43 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+++|+|++|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999998876
No 221
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.007 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 222
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.14 E-value=0.0085 Score=60.56 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCC-----ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeC
Q 045709 214 QESIAKKIGLFN-----ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTR 284 (337)
Q Consensus 214 ~~~i~~~l~~~~-----~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr 284 (337)
..+++..++... ......+..+.++. |...+-.++-+||||+--+..+.. .+...+... + ..||++|+
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g-~tVIiISH 956 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--E-GGVIIITH 956 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--S-SEEEEECS
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--C-CEEEEEEC
Confidence 345566666532 11245565555544 556777889999999876543322 121112111 3 47888999
Q ss_pred ChhHHhhccCCceeec
Q 045709 285 EFGVCGQMEAHRSFKV 300 (337)
Q Consensus 285 ~~~v~~~~~~~~~~~l 300 (337)
+.+....+ +++++.|
T Consensus 957 D~e~v~~l-~DrVivL 971 (986)
T 2iw3_A 957 SAEFTKNL-TEEVWAV 971 (986)
T ss_dssp CHHHHTTT-CCEEECC
T ss_pred CHHHHHHh-CCEEEEE
Confidence 87766543 2344444
No 223
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.13 E-value=0.0035 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.|.|++|+||||+++.+...+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 224
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.12 E-value=0.0033 Score=53.25 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=67.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEE------------------EEEec----CccCH----------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVI------------------WVVVS----RDLQL---------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~------------------wv~~~----~~~~~---------- 210 (337)
.. .+++|+|++|+|||||.+.+..-.. .....+ |+.-. ...++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 97 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK----PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN 97 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC----CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH
Confidence 46 8999999999999999999976441 111111 11100 00011
Q ss_pred ------HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCC--CCC
Q 045709 211 ------EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSR--TSV 275 (337)
Q Consensus 211 ------~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~--~~g 275 (337)
.+-..++++.++... ......+..+.++. +...|-.++-+|+||+.-+..+.. .+...+... ..|
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g 177 (240)
T 2onk_A 98 VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177 (240)
T ss_dssp SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 122344555555532 11234555555443 566777888899999976543321 111111111 124
Q ss_pred CcEEEEeeCChhHHh
Q 045709 276 SNKVVFTTREFGVCG 290 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~ 290 (337)
..||++|++.+.+.
T Consensus 178 -~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 178 -VPILHVTHDLIEAA 191 (240)
T ss_dssp -CCEEEEESCHHHHH
T ss_pred -CEEEEEeCCHHHHH
Confidence 67999999866543
No 225
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.11 E-value=0.0036 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 226
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.11 E-value=0.0054 Score=54.11 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=30.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
++.++|+|.|-||+||||.+..+..-+. ..-..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 4689999999999999999999888773 2222466666654
No 227
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.11 E-value=0.0036 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0039 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|++|+||||+++.++..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.10 E-value=0.0057 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|.|.|++|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998876
No 230
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.09 E-value=0.0053 Score=50.32 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=28.2
Q ss_pred HHHHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+..++.. ++...+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555544 234579999999999999999998877
No 231
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.09 E-value=0.0045 Score=49.61 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|+|.|++|+||||+++.+....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 232
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.08 E-value=0.017 Score=62.40 Aligned_cols=88 Identities=20% Similarity=0.193 Sum_probs=60.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|+|.+|+||||||.+++.... ..-..++|++.....+... +..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 678999999999999999999988873 2234688888877666432 55666543221 234566666666
Q ss_pred HHHh-cCCcEEEEEecCCCc
Q 045709 241 FKIL-SKKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l-~~k~~LlVlDdv~~~ 259 (337)
.... ..+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHhcCCcEEEECCHHHh
Confidence 5544 345679999988643
No 233
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.08 E-value=0.025 Score=52.40 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=35.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
...++.|.|.+|+|||||+..++..... ..-..++|++... +...+...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCC--CHHHHHHHHH
Confidence 5679999999999999999999887631 1223577776653 3445555544
No 234
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.08 E-value=0.0039 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|.|++|+||||+++.+...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999887
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.07 E-value=0.062 Score=50.46 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|.|+|.+|+||||++..++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998776
No 236
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.07 E-value=0.0043 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++.|+|.+|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998877
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.07 E-value=0.0046 Score=53.47 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=67.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C----------------cEEEEEEecCc-----cCHH---------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F----------------DFVIWVVVSRD-----LQLE--------- 211 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f----------------~~~~wv~~~~~-----~~~~--------- 211 (337)
+..+++|+|++|+|||||++.+..-.....+. + ..+.|+.-... .++.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~ 112 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN 112 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence 56799999999999999999997644100000 0 01233321110 0111
Q ss_pred ---------HHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCC--C
Q 045709 212 ---------KIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSR--T 273 (337)
Q Consensus 212 ---------~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~--~ 273 (337)
+...+++..++... ......+..+.++. |...|..++-+|+||+.-+..+.. .+...+... .
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 12234445555432 11234555554443 666777888999999976543311 111111111 1
Q ss_pred CCCcEEEEeeCChhHHhh
Q 045709 274 SVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 274 ~g~s~IiiTtr~~~v~~~ 291 (337)
.| ..||++|.+.+.+..
T Consensus 193 ~g-~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 193 LG-ITIIIATHDIDIVPL 209 (275)
T ss_dssp HC-CEEEEEESCCSSGGG
T ss_pred CC-CEEEEEecCHHHHHH
Confidence 25 788999988665543
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.06 E-value=0.0024 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=17.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHH-Hhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQIN-NRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~-~~~ 189 (337)
...+++|+|++|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998 543
No 239
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.05 E-value=0.0039 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|+|.|+.|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 240
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.05 E-value=0.0033 Score=54.03 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999997644
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.03 E-value=0.01 Score=52.51 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|.+|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998877
No 242
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.01 E-value=0.0042 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 243
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.99 E-value=0.0041 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
...+++|+|++|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999999874
No 244
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.99 E-value=0.033 Score=52.48 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
...++.|.|.+|+|||||+..++.... . .+-..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHH
Confidence 567899999999999999999988872 1 2133577777654 3445555443
No 245
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.98 E-value=0.0044 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....+++|+|++|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36679999999999999999999874
No 246
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.98 E-value=0.0037 Score=53.72 Aligned_cols=126 Identities=19% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCC------C------CC------cEEEEEEecC----ccCHHH--------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTP------N------HF------DFVIWVVVSR----DLQLEK-------- 212 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~------~f------~~~~wv~~~~----~~~~~~-------- 212 (337)
....+++|+|++|+|||||++.+..-..... + .. ..+.|+.-.. ..++.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~ 127 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK 127 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 3667999999999999999999976441000 0 00 0133332111 111111
Q ss_pred -----------HHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc------ccccCCCCC
Q 045709 213 -----------IQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL------DQVGLPIPS 271 (337)
Q Consensus 213 -----------~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~ 271 (337)
...++++.++... ......+..+.++. +...|-.++-+|+||+.-+..+. .++...+.
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~- 206 (263)
T 2olj_A 128 VRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA- 206 (263)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-
Confidence 1233445554421 11234555554443 55677778889999998655331 12211121
Q ss_pred CCCCCcEEEEeeCChhHHhh
Q 045709 272 RTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~ 291 (337)
..| ..||++|++.+.+..
T Consensus 207 -~~g-~tvi~vtHd~~~~~~ 224 (263)
T 2olj_A 207 -NEG-MTMVVVTHEMGFARE 224 (263)
T ss_dssp -HTT-CEEEEECSCHHHHHH
T ss_pred -hCC-CEEEEEcCCHHHHHH
Confidence 125 789999998766543
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.97 E-value=0.017 Score=61.62 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
...++.|+|.+|+||||||.+++.... ..-..++|++.....+.. .+..++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 578999999999999999999988773 223468899887776653 255666543221 233456666656
Q ss_pred HHHh-cCCcEEEEEecCCCc
Q 045709 241 FKIL-SKKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l-~~k~~LlVlDdv~~~ 259 (337)
.... ..+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 5544 345669999998654
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.97 E-value=0.0036 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999999999999999996643
No 249
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.97 E-value=0.0036 Score=53.02 Aligned_cols=123 Identities=20% Similarity=0.107 Sum_probs=66.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC----------CC-------cEEEEEEecC----ccC-------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN----------HF-------DFVIWVVVSR----DLQ------------- 209 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~f-------~~~~wv~~~~----~~~------------- 209 (337)
...+++|+|++|+|||||.+.++.-.....+ .. ..+.|+.-.. ..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 5679999999999999999999764310000 00 0133332110 001
Q ss_pred ----HHHHHHHHHHHhC-CC---CccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCC
Q 045709 210 ----LEKIQESIAKKIG-LF---NESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTS 274 (337)
Q Consensus 210 ----~~~~~~~i~~~l~-~~---~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~ 274 (337)
..+....+++.++ .. .......+..+.++. +...|..++-+|+||+.-+..+.. .+...+.. .
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~ 188 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--E 188 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 1122334444442 21 112244555554443 556777788899999986653321 11111211 3
Q ss_pred CCcEEEEeeCChhHH
Q 045709 275 VSNKVVFTTREFGVC 289 (337)
Q Consensus 275 g~s~IiiTtr~~~v~ 289 (337)
| ..||++|++.+.+
T Consensus 189 g-~tvi~vtHd~~~~ 202 (240)
T 1ji0_A 189 G-TTILLVEQNALGA 202 (240)
T ss_dssp T-CCEEEEESCHHHH
T ss_pred C-CEEEEEecCHHHH
Confidence 5 6789999987544
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.96 E-value=0.0057 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999997654
No 251
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.96 E-value=0.013 Score=56.64 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.+..++.+...+... ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4799988888887777544 688999999999999999999876
No 252
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.0024 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.743 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+|+|.|.+|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998877
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.96 E-value=0.0034 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
...+++|+|++|+|||||++.+..-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999765
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.95 E-value=0.0032 Score=52.30 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C---------cEEEEEEecC----ccCHH----------------H
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F---------DFVIWVVVSR----DLQLE----------------K 212 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f---------~~~~wv~~~~----~~~~~----------------~ 212 (337)
...+++|+|++|+|||||++.++.-.....+. + ..+.|+.-.. ..++. .
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 113 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 113 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHH
Confidence 56789999999999999999997654100000 0 1123332111 11111 1
Q ss_pred HHHHHHHHhCCCC--ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCC-CCCCcEEEEeeCC
Q 045709 213 IQESIAKKIGLFN--ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSR-TSVSNKVVFTTRE 285 (337)
Q Consensus 213 ~~~~i~~~l~~~~--~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~-~~g~s~IiiTtr~ 285 (337)
-...+++.++... ......+..+.++. +...|..++-+|+||+.-+..+.. .+...+... ..| ..||++|++
T Consensus 114 ~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g-~tiiivtHd 192 (214)
T 1sgw_A 114 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSRE 192 (214)
T ss_dssp HHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESS
T ss_pred HHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 2334555555432 11234455554443 566777888899999876543321 111111110 124 678888887
Q ss_pred hhHHh
Q 045709 286 FGVCG 290 (337)
Q Consensus 286 ~~v~~ 290 (337)
...+.
T Consensus 193 ~~~~~ 197 (214)
T 1sgw_A 193 ELSYC 197 (214)
T ss_dssp CCTTS
T ss_pred HHHHH
Confidence 65443
No 255
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.94 E-value=0.0061 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466799999999999999999997654
No 256
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.93 E-value=0.0046 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998766
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.93 E-value=0.0054 Score=52.21 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.93 E-value=0.004 Score=53.25 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C-------------cEEEEEEecC----ccCHHH-----------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F-------------DFVIWVVVSR----DLQLEK----------- 212 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f-------------~~~~wv~~~~----~~~~~~----------- 212 (337)
....+++|+|++|+|||||.+.++.-.....+. + ..+.++.-.. ..++.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~ 118 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS 118 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 356799999999999999999997644100000 0 0123332110 111111
Q ss_pred -------HHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc------ccccCCCCCCCCC
Q 045709 213 -------IQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL------DQVGLPIPSRTSV 275 (337)
Q Consensus 213 -------~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~g 275 (337)
-..++++.++... ......+..+.++. +...|..++-+|+||+.-+..+. .++...+. ..|
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g 196 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEG 196 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTT
T ss_pred ChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCC
Confidence 2234455555532 11234555554443 55677788889999998665331 11111121 135
Q ss_pred CcEEEEeeCChhHHhh
Q 045709 276 SNKVVFTTREFGVCGQ 291 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~ 291 (337)
..||++|.+.+.+..
T Consensus 197 -~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 197 -LTILVSSHNMLEVEF 211 (256)
T ss_dssp -CEEEEEECCHHHHTT
T ss_pred -CEEEEEcCCHHHHHH
Confidence 789999998766544
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.92 E-value=0.0043 Score=52.63 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456899999999999999999996643
No 260
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.91 E-value=0.0044 Score=53.33 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=68.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C--------------cEEEEEEecC----cc---------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F--------------DFVIWVVVSR----DL--------------- 208 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f--------------~~~~wv~~~~----~~--------------- 208 (337)
...+++|+|++|+|||||++.+..-.....+. | ..+.++.-.. ..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 56899999999999999999997644110000 0 0122221100 01
Q ss_pred -CHHHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcC------CcEEEEEecCCCcccc------ccccCCCCC
Q 045709 209 -QLEKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSK------KKFVLLLDDIWELVDL------DQVGLPIPS 271 (337)
Q Consensus 209 -~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~------k~~LlVlDdv~~~~~~------~~l~~~l~~ 271 (337)
...+...+++..++... ......+..+.++. |...|-. ++-+|+||+.-+..+. .++...+..
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 12233455666666532 12234555554443 4455555 8889999997654331 111111111
Q ss_pred CCCCCcEEEEeeCChhHHhh
Q 045709 272 RTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~ 291 (337)
..+ ..||++|++-+.+..
T Consensus 196 -~~~-~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 196 -QEP-LAVCCVLHDLNLAAL 213 (266)
T ss_dssp -HSS-EEEEEECSCHHHHHH
T ss_pred -cCC-CEEEEEEcCHHHHHH
Confidence 123 689999999776543
No 261
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.90 E-value=0.0046 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|+|++|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 262
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.90 E-value=0.0056 Score=55.00 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+++|+|++|+||||+++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999998876
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.89 E-value=0.011 Score=49.62 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=24.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|.|++|+||||+++.+...+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999988
No 264
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.89 E-value=0.0052 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|+|.|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998764
No 265
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.87 E-value=0.025 Score=50.94 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc
Q 045709 155 RVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD 207 (337)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 207 (337)
+.++.+.. .+...++|+|.+|+|||+|+..+.+........+.+ +++-+...
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 34555544 467789999999999999999998875211123333 45655543
No 266
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.86 E-value=0.018 Score=61.53 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEI 240 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 240 (337)
+.++|-|+|+.|+||||||.++.... +..-...+|+...+..++.- +..++...+.. ...+.++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 56899999999999999999998776 34456788888887766653 77777765433 334456666666
Q ss_pred HHHhc-CCcEEEEEecCCCc
Q 045709 241 FKILS-KKKFVLLLDDIWEL 259 (337)
Q Consensus 241 ~~~l~-~k~~LlVlDdv~~~ 259 (337)
...++ +..-++|+|-|-..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHcCCCCEEEEccHHhC
Confidence 66665 45669999988543
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.83 E-value=0.0047 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356799999999999999999997654
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.82 E-value=0.0045 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999997654
No 269
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.82 E-value=0.0087 Score=52.49 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD 207 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 207 (337)
...++|+|+|.||+||||+|..++..+.+ .-..++-++....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCC
Confidence 46789999999999999999999888732 2224666666543
No 270
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.81 E-value=0.0048 Score=53.12 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=68.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C-----------cEEEEEEecC-----ccCH--------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F-----------DFVIWVVVSR-----DLQL-------------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f-----------~~~~wv~~~~-----~~~~-------------- 210 (337)
....+++|+|++|+|||||++.++.-.....+. + ..+.|+.-.. ..++
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 110 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD 110 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCH
Confidence 356799999999999999999997644100000 0 1123332110 0011
Q ss_pred ---HHHHHHHHHHhCCC--C---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCCC
Q 045709 211 ---EKIQESIAKKIGLF--N---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTSV 275 (337)
Q Consensus 211 ---~~~~~~i~~~l~~~--~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~g 275 (337)
.+-...+++.++.. . ......+..+.++. +...|..++-+|+||+.-+..+.. ++...+.. .|
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g 188 (266)
T 2yz2_A 111 RDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT--LG 188 (266)
T ss_dssp SCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH--cC
Confidence 11233455555554 1 11234555544443 556777888899999987653321 11111211 25
Q ss_pred CcEEEEeeCChhHHh
Q 045709 276 SNKVVFTTREFGVCG 290 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~ 290 (337)
..||++|++.+.+.
T Consensus 189 -~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 189 -KTVILISHDIETVI 202 (266)
T ss_dssp -CEEEEECSCCTTTG
T ss_pred -CEEEEEeCCHHHHH
Confidence 68889998865543
No 271
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.81 E-value=0.0056 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998877
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.80 E-value=0.01 Score=50.88 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 567899999999999999999998765
No 273
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.80 E-value=0.031 Score=51.80 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=31.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
.+..++.|.|.+|+||||||..++..... . -..++|++...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm 235 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM 235 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC
Confidence 35679999999999999999999887732 2 24677776543
No 274
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.77 E-value=0.0047 Score=53.52 Aligned_cols=26 Identities=42% Similarity=0.543 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56799999999999999999997644
No 275
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.77 E-value=0.0066 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 276
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.0036 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+++|+|.+|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998877
No 277
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.74 E-value=0.0049 Score=52.61 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC---CcEEEEEEecC----ccCH----------------------HHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH---FDFVIWVVVSR----DLQL----------------------EKIQ 214 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~----~~~~----------------------~~~~ 214 (337)
...+++|+|++|+|||||.+.++.-.....+. ...+.|+.-.. ..++ .+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 56789999999999999999997754110010 01123332100 0011 1223
Q ss_pred HHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCCCCcEEEEeeC
Q 045709 215 ESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTSVSNKVVFTTR 284 (337)
Q Consensus 215 ~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~g~s~IiiTtr 284 (337)
..++..++... ......+..+.++. +...|..++-+|+||+.-+..+.. ++...+.. ..| ..||++|+
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g-~tvi~vtH 187 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQN-MTVVFTTH 187 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSC-CEEEEEES
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcC-CEEEEEec
Confidence 45556665532 11234555554443 556667788899999987653321 11111111 125 78999999
Q ss_pred ChhHHh
Q 045709 285 EFGVCG 290 (337)
Q Consensus 285 ~~~v~~ 290 (337)
+.+.+.
T Consensus 188 d~~~~~ 193 (253)
T 2nq2_C 188 QPNQVV 193 (253)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876653
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.74 E-value=0.0064 Score=53.31 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++..+++|+|++|+|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 467899999999999999999997654
No 279
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.71 E-value=0.0071 Score=50.85 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|.|++|+||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 280
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.68 E-value=0.022 Score=52.21 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.3
Q ss_pred hcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 161 MEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 161 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
......+++|+|++|+|||||++.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34567899999999999999999998876
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.67 E-value=0.012 Score=50.93 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=61.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC-------CCcEEEEEEecCccCHHHHHHH---------------HHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-------HFDFVIWVVVSRDLQLEKIQES---------------IAKKI 221 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~~~~~~~~~~~~~---------------i~~~l 221 (337)
...++.|+|.+|+|||||+..++........ .-..++|++..... ..+... ++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCce
Confidence 5689999999999999999999876521100 02346677765543 222111 12222
Q ss_pred CCCCc---cccCCCHHHHHHHHHHHhcCCcEEEEEecCCCc--ccc------ccccCCCCC--CCCCCcEEEEeeCChhH
Q 045709 222 GLFNE---SWKNKSMQEKAQEIFKILSKKKFVLLLDDIWEL--VDL------DQVGLPIPS--RTSVSNKVVFTTREFGV 288 (337)
Q Consensus 222 ~~~~~---~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~------~~l~~~l~~--~~~g~s~IiiTtr~~~v 288 (337)
..... .....+..+ .+.+...+. +.-+||||.+-.. .+- ..+...+.. ...| +.||++|+....
T Consensus 107 ~l~~~~~~~~~~ls~g~-~~~i~~l~~-~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g-~tvi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEW-FDGLKRAAE-GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHH-HHHHHHHHT-TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC---
T ss_pred EEeecCCCCcccCCHHH-HHHHHHhcC-CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC-CEEEEEecCCCc
Confidence 21110 112223332 445555554 4679999998652 111 122111211 1235 788888886544
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.67 E-value=0.0077 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|.|++|+||||+++.+...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999887
No 283
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.0074 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 284
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.66 E-value=0.0072 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++|+|.|+.|+||||+++.+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 285
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.65 E-value=0.0082 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+++.|+|.+|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 286
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.64 E-value=0.0073 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.|.|++|+||||+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 287
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.59 E-value=0.026 Score=50.65 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=28.5
Q ss_pred HHHHHHHHh--cCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLM--EEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+...+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 3467899999999999999999998776
No 288
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.59 E-value=0.0084 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQIN 186 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~ 186 (337)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 289
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.58 E-value=0.0079 Score=48.68 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-.++|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998765
No 290
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.57 E-value=0.0075 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|+|.+|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 291
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.0083 Score=53.79 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CC----------------cEEEEEEecC----ccC-----------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HF----------------DFVIWVVVSR----DLQ----------- 209 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f----------------~~~~wv~~~~----~~~----------- 209 (337)
....+++|+|++|+|||||.+.++.-.....+ .| ..+.++.-.. ..+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999774410000 00 1122221000 001
Q ss_pred -------HHHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc-------ccccCCCCC
Q 045709 210 -------LEKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL-------DQVGLPIPS 271 (337)
Q Consensus 210 -------~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~l~~ 271 (337)
..+-..++++.++... ......+..+.++. |.+.|-.++-+|+||+--+..+. ..+.....
T Consensus 108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~- 186 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR- 186 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-
T ss_pred cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-
Confidence 1223445666666532 11244555555443 66677788889999997654331 12211111
Q ss_pred CCCCCcEEEEeeCChhHHhhc
Q 045709 272 RTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 272 ~~~g~s~IiiTtr~~~v~~~~ 292 (337)
..| ..||++|++.+.+..+
T Consensus 187 -~~g-~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 187 -ANG-KSAVFVSHDREEALQY 205 (359)
T ss_dssp -HTT-CEEEEECCCHHHHHHH
T ss_pred -hCC-CEEEEEeCCHHHHHHH
Confidence 235 7899999987765443
No 292
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.54 E-value=0.023 Score=50.48 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.9
Q ss_pred HhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCcc
Q 045709 160 LMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDL 208 (337)
Q Consensus 160 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 208 (337)
+.....+++.+.|.||+||||+|..++.... ..-..++-++.....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAH 56 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSC
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCC
Confidence 3445577888899999999999999988772 223345555554333
No 293
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.52 E-value=0.0074 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356799999999999999999997654
No 294
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.51 E-value=0.037 Score=51.51 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeEEEEEecCCCcHHHHH-HHHHHhhccCCCCCc-EEEEEEecCcc-CHHHHHHHHHHHhCCCCcc----ccCCCHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQESIAKKIGLFNES----WKNKSMQE 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 235 (337)
.+...++|+|.+|+|||+|| ..+.+.. . -+ .++++-+.... ...++.+.+...-...... ..+.+...
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 234 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK---G--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL 234 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG---S--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh---c--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence 35678899999999999995 4666654 2 33 34566666543 4556666665532221110 01111111
Q ss_pred H------HHHHHHHh--cCCcEEEEEecCC
Q 045709 236 K------AQEIFKIL--SKKKFVLLLDDIW 257 (337)
Q Consensus 236 ~------~~~l~~~l--~~k~~LlVlDdv~ 257 (337)
. .-.+.+++ +++..||++||+-
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 235 LYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1 11233333 5789999999975
No 295
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.51 E-value=0.03 Score=56.60 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQI 185 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v 185 (337)
...+++|+|++|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999998
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.48 E-value=0.0091 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|+|.|++|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998876
No 297
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.48 E-value=0.013 Score=55.81 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..++.|+|++|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 56799999999999999999999887
No 298
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.46 E-value=0.032 Score=51.97 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCCCcHHHHHH-HHHHhhccCCCCCc-EEEEEEecCcc-CHHHHHHHHHHHhCCCCcc----ccCCCHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLT-QINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQESIAKKIGLFNES----WKNKSMQE 235 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 235 (337)
.+...++|+|.+|+|||+||. .+.+.. ..+ .++++-+.... .+.++.+.+...-...... ..+.+...
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 366789999999999999964 666654 234 34666666543 4556666665432111100 01111111
Q ss_pred H------HHHHHHHh--cCCcEEEEEecCC
Q 045709 236 K------AQEIFKIL--SKKKFVLLLDDIW 257 (337)
Q Consensus 236 ~------~~~l~~~l--~~k~~LlVlDdv~ 257 (337)
. .-.+.+++ +++..||++||+-
T Consensus 248 r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1 11223333 5789999999975
No 299
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.45 E-value=0.029 Score=45.82 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=44.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccc---cCCCHHHHHHHHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESW---KNKSMQEKAQEIFKI 243 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~ 243 (337)
.|+|=|.-|+||||.++.+.+.+. .....+++..-.......+....++..-....... -..+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~---~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE---KRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999883 22223344433333334445555543322110000 001112233445555
Q ss_pred hcCCcEEEEEecC
Q 045709 244 LSKKKFVLLLDDI 256 (337)
Q Consensus 244 l~~k~~LlVlDdv 256 (337)
|... ..+|.|-.
T Consensus 79 L~~g-~~Vi~DRy 90 (197)
T 3hjn_A 79 LSEG-YAVLLDRY 90 (197)
T ss_dssp HTTT-CEEEEESC
T ss_pred HHCC-CeEEeccc
Confidence 6544 45677754
No 300
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.45 E-value=0.025 Score=47.58 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=28.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEE
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVV 203 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 203 (337)
....|.|.|++|+||||+++.+...+. ...+..+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 357899999999999999999998873 33455344443
No 301
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.44 E-value=0.02 Score=51.18 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.1
Q ss_pred HhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 160 LMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 160 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.....+++.+.|.||+||||+|..++...
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334567899999999999999999988766
No 302
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.42 E-value=0.02 Score=53.37 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 150 QLTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 150 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+..+...+.+.+ +.+.|.|.+|+||||++..+....
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344445555554433 489999999999999999998877
No 303
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.42 E-value=0.03 Score=46.35 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=26.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcE
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDF 198 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~ 198 (337)
...|.|-|+.|+||||+++.+...+. ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCc
Confidence 56899999999999999999998883 234544
No 304
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.39 E-value=0.0095 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++|.|+|+.|+|||||+..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44689999999999999999998765
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.39 E-value=0.0089 Score=52.46 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+..-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467899999999999999999997644
No 306
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.38 E-value=0.0099 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|+|++|+|||||++.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998876
No 307
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.37 E-value=0.0089 Score=48.62 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-.++|+|.+|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 308
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.36 E-value=0.031 Score=46.26 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=33.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAK 219 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 219 (337)
...|.+-|..|+||||+++.+...+. ...+..+.+..-.....+.+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999998873 233423343333322234444555554
No 309
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.36 E-value=0.014 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
...+++|+|.+|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999873
No 310
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.35 E-value=0.0097 Score=53.31 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=69.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC--------------CCcEEEEEEec----CccCH---------------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--------------HFDFVIWVVVS----RDLQL--------------- 210 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------~f~~~~wv~~~----~~~~~--------------- 210 (337)
...+++|+|++|+|||||.+.++.-.....+ .-..+.++.-. ...++
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 5679999999999999999999765410000 00113333211 00111
Q ss_pred ---HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc-------ccccCCCCCCCCCC
Q 045709 211 ---EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL-------DQVGLPIPSRTSVS 276 (337)
Q Consensus 211 ---~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~-------~~l~~~l~~~~~g~ 276 (337)
.+-..++++.++... ......+..+.++. |...|-.++-+|+||+--+..+. +.+.. +.. ..|
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~~-~~g- 196 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VHD-EMG- 196 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHH-HHH-HHT-
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HHH-hcC-
Confidence 112334555555532 11234555554443 66677788889999997654331 12211 111 124
Q ss_pred cEEEEeeCChhHHhhc
Q 045709 277 NKVVFTTREFGVCGQM 292 (337)
Q Consensus 277 s~IiiTtr~~~v~~~~ 292 (337)
..||++|++.+.+..+
T Consensus 197 ~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 197 VTSVFVTHDQEEALEV 212 (355)
T ss_dssp CEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHh
Confidence 6899999987765443
No 311
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.35 E-value=0.011 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.|.|+.|+|||||+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 312
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.34 E-value=0.0061 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|+|.|..|+||||+++.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 313
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.34 E-value=0.01 Score=53.25 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=70.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--------------CCcEEEEEEecC----ccCH--------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--------------HFDFVIWVVVSR----DLQL-------------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------~f~~~~wv~~~~----~~~~-------------- 210 (337)
....+++|+|++|+|||||.+.++.-.....+ .-..+.++.-.. ..++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS 106 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 35679999999999999999999764410000 001123332110 0011
Q ss_pred ----HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccc-------cccccCCCCCCCCC
Q 045709 211 ----EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVD-------LDQVGLPIPSRTSV 275 (337)
Q Consensus 211 ----~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~g 275 (337)
.+-..++++.++... ......+..+.++. |...|-.++-+|+||+--+..+ ++.+.. +.. ..|
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~~-~~g 184 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH-LQQ-ELG 184 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH-HHH-HHC
T ss_pred HHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHH-hcC
Confidence 122345666666532 11234555555443 6667778888999999765433 111211 111 124
Q ss_pred CcEEEEeeCChhHHhhc
Q 045709 276 SNKVVFTTREFGVCGQM 292 (337)
Q Consensus 276 ~s~IiiTtr~~~v~~~~ 292 (337)
..||++|++.+.+..+
T Consensus 185 -~tvi~vTHd~~~~~~~ 200 (359)
T 2yyz_A 185 -ITSVYVTHDQAEAMTM 200 (359)
T ss_dssp -CEEEEEESCHHHHHHH
T ss_pred -CEEEEEcCCHHHHHHh
Confidence 6899999997765433
No 314
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.34 E-value=0.0077 Score=51.68 Aligned_cols=123 Identities=18% Similarity=0.145 Sum_probs=66.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCC-------------CcEEE-EEEecC--ccCHH--------------HHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-------------FDFVI-WVVVSR--DLQLE--------------KIQ 214 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------f~~~~-wv~~~~--~~~~~--------------~~~ 214 (337)
..+++|+|++|+|||||.+.++.-. ...+. ...+. |+.-.. ..++. +-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 5689999999999999999997543 11000 01122 221110 11111 123
Q ss_pred HHHHHHhCCC-C---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCCCCCCCcEEEEeeCCh
Q 045709 215 ESIAKKIGLF-N---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPSRTSVSNKVVFTTREF 286 (337)
Q Consensus 215 ~~i~~~l~~~-~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~~~~g~s~IiiTtr~~ 286 (337)
.+++..++.. . ......+..+.++. +...|..++-+|+||+.-+..+.. .+...+... .. .||++|++.
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~-~~--tviivtHd~ 185 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-GK--EGILVTHEL 185 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHS-CS--EEEEEESCG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHh-cC--cEEEEEcCH
Confidence 4556666654 2 11234555554443 556677788899999986653321 111111111 11 688899986
Q ss_pred hHHhh
Q 045709 287 GVCGQ 291 (337)
Q Consensus 287 ~v~~~ 291 (337)
+.+..
T Consensus 186 ~~~~~ 190 (263)
T 2pjz_A 186 DMLNL 190 (263)
T ss_dssp GGGGG
T ss_pred HHHHH
Confidence 65443
No 315
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.33 E-value=0.013 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|+|.|++|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.33 E-value=0.011 Score=47.23 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+.+|+|.+|+|||||+..++.-.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999997654
No 317
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.32 E-value=0.018 Score=54.08 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHH--hcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 145 TVVGLQLTFDRVWRCL--MEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 145 ~~vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+.|.+..+.+.+.. ...+..+|.+.|++|+||||+++.+...+
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3455555555555554 22356789999999999999999999998
No 318
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.32 E-value=0.011 Score=53.23 Aligned_cols=128 Identities=22% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--------------CCcEEEEEEecC----ccCH--------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--------------HFDFVIWVVVSR----DLQL-------------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------~f~~~~wv~~~~----~~~~-------------- 210 (337)
....+++|+|++|+|||||.+.++.-.....+ .-..+.++.-.. ..++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 106 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP 106 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 35679999999999999999999765410000 001123332110 0111
Q ss_pred ----HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCc
Q 045709 211 ----EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSN 277 (337)
Q Consensus 211 ----~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s 277 (337)
.+-..++++.++... ......+..+.++. |.+.|-.++-+|+||+--+..+.. .+...+.. ...| .
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~ 185 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-I 185 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-C
Confidence 112334555565532 11234555555443 667777888899999876543311 11111111 1125 6
Q ss_pred EEEEeeCChhHHhh
Q 045709 278 KVVFTTREFGVCGQ 291 (337)
Q Consensus 278 ~IiiTtr~~~v~~~ 291 (337)
.||++|++.+.+..
T Consensus 186 tvi~vTHd~~~a~~ 199 (362)
T 2it1_A 186 TTVYVTHDQAEALA 199 (362)
T ss_dssp EEEEEESCHHHHHH
T ss_pred EEEEECCCHHHHHH
Confidence 89999998766543
No 319
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.31 E-value=0.026 Score=47.91 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999877
No 320
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.30 E-value=0.0074 Score=50.62 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
+..+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999998664
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.29 E-value=0.011 Score=53.45 Aligned_cols=129 Identities=22% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC--------------CCcEEEEEEec----CccCH--------------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--------------HFDFVIWVVVS----RDLQL-------------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------~f~~~~wv~~~----~~~~~-------------- 210 (337)
....+++|+|++|+|||||.+.+..-.....+ .-..+.+|.-. ...++
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~ 106 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK 106 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 35679999999999999999999775410000 00112222111 00111
Q ss_pred ----HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc---ccccCCCCC--CCCCCc
Q 045709 211 ----EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL---DQVGLPIPS--RTSVSN 277 (337)
Q Consensus 211 ----~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~---~~l~~~l~~--~~~g~s 277 (337)
.+-..++++.++... ......+..+.++. |.+.|..++-+|+||+--+..+. ..+...+.. ...| .
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~ 185 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-R 185 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-C
Confidence 122344555555532 11234555554443 55666677889999987654331 111111111 1125 7
Q ss_pred EEEEeeCChhHHhhc
Q 045709 278 KVVFTTREFGVCGQM 292 (337)
Q Consensus 278 ~IiiTtr~~~v~~~~ 292 (337)
.||++|.+.+.+..+
T Consensus 186 tii~vTHd~~ea~~~ 200 (381)
T 3rlf_A 186 TMIYVTHDQVEAMTL 200 (381)
T ss_dssp EEEEECSCHHHHHHH
T ss_pred EEEEEECCHHHHHHh
Confidence 889999987665443
No 322
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.28 E-value=0.063 Score=50.85 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCC-------------CccccC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLF-------------NESWKN 230 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------~~~~~~ 230 (337)
...+++|.|.+|+|||||++.++.... .. -..++++..... ...+...+ ..++.. ......
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC-AN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-hC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEecccc
Confidence 568999999999999999999988762 22 123455544332 23333222 112211 011123
Q ss_pred CCHHHHHHHHH-HHhcCCcEEEEEec
Q 045709 231 KSMQEKAQEIF-KILSKKKFVLLLDD 255 (337)
Q Consensus 231 ~~~~~~~~~l~-~~l~~k~~LlVlDd 255 (337)
.+..+.++.+. ..+..++-+||||-
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 45555555544 45567788999993
No 323
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.27 E-value=0.011 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 324
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.25 E-value=0.012 Score=48.09 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.+.+.....+.-.|.++|.+|+|||||...+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3333333444456678999999999999999988654
No 325
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.25 E-value=0.0092 Score=54.85 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999997765
No 326
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.23 E-value=0.012 Score=53.16 Aligned_cols=129 Identities=18% Similarity=0.112 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCC-----------C---CCcEEEEEEec----Ccc---------------C
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTP-----------N---HFDFVIWVVVS----RDL---------------Q 209 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------~---~f~~~~wv~~~----~~~---------------~ 209 (337)
....+++|+|++|+|||||.+.++.-..... . .-..+.++.-. ... .
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~ 114 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP 114 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC
Confidence 3567999999999999999999976441000 0 00112232210 000 1
Q ss_pred H---HHHHHHHHHHhCCCC---ccccCCCHHHHH-HHHHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCc
Q 045709 210 L---EKIQESIAKKIGLFN---ESWKNKSMQEKA-QEIFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSN 277 (337)
Q Consensus 210 ~---~~~~~~i~~~l~~~~---~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s 277 (337)
. .+-..++++.++... ......+..+.+ -.|.+.|-.++-+|+||+--+..+.. .+...+.. ...| .
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~ 193 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-V 193 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-C
Confidence 1 123445666666532 111233333322 23556677788899999976543311 11111111 1124 6
Q ss_pred EEEEeeCChhHHhhc
Q 045709 278 KVVFTTREFGVCGQM 292 (337)
Q Consensus 278 ~IiiTtr~~~v~~~~ 292 (337)
.||++|++...+..+
T Consensus 194 tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 194 TTIYVTHDQVEAMTM 208 (372)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEEeCCHHHHHHh
Confidence 899999987665433
No 327
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.21 E-value=0.011 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 328
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.20 E-value=0.012 Score=53.25 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CC------------------cEEEEEEec----CccCHH--------
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HF------------------DFVIWVVVS----RDLQLE-------- 211 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f------------------~~~~wv~~~----~~~~~~-------- 211 (337)
...+++|+|++|+|||||.+.++.-.....+ .+ ..+.++.-. ...++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 5679999999999999999999765410000 00 012222110 001111
Q ss_pred ----------HHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccc-------cccccCCCC
Q 045709 212 ----------KIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVD-------LDQVGLPIP 270 (337)
Q Consensus 212 ----------~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~ 270 (337)
+-..++++.++... ......+..+.++. |...|-.++-+|+||+--+..+ +..+.. +.
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~ 186 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQ 186 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH-HH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH-HH
Confidence 12334555555532 11234555554443 5667777888999998765433 111211 11
Q ss_pred CCCCCCcEEEEeeCChhHHhhc
Q 045709 271 SRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
. ..| ..||++|++.+.+..+
T Consensus 187 ~-~~g-~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 187 R-QLG-VTTIYVTHDQVEAMTM 206 (372)
T ss_dssp H-HHT-CEEEEEESCHHHHHHH
T ss_pred H-hcC-CEEEEECCCHHHHHHh
Confidence 1 124 6899999987765433
No 329
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.024 Score=45.35 Aligned_cols=35 Identities=37% Similarity=0.679 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
+..+.+ +...+...|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 44456778999999999999999999854
No 330
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.15 E-value=0.013 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.069 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999998765
No 331
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.0067 Score=58.45 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=32.4
Q ss_pred CccccchhhHHHHHHHHhcCCCe-----------EEEEEecCCCcHHHHHHHHHHhh
Q 045709 144 PTVVGLQLTFDRVWRCLMEEHAG-----------IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 144 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.++|.+.....+.-.|.....+ -+.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44677776666554444333211 58899999999999999997665
No 332
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.12 E-value=0.0094 Score=53.29 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEE------------------EEEEec----CccCHH---------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFV------------------IWVVVS----RDLQLE--------- 211 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~------------------~wv~~~----~~~~~~--------- 211 (337)
....+++|+|++|+|||||.+.++.-.. ..... .++.-. ...++.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~----p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHV----PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSC----CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCC----CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999976541 11112 222110 001111
Q ss_pred ------HHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccc-------cccccCCCCCCCC
Q 045709 212 ------KIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVD-------LDQVGLPIPSRTS 274 (337)
Q Consensus 212 ------~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~l~~~~~ 274 (337)
+-..++++.++... ......+..+.++. |.+.|-.++-+|+||+--+..+ ++.+. .+.. ..
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~-~l~~-~~ 177 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHK-KN 177 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHH-HHHH-HT
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH-HHHH-hc
Confidence 12344556665532 11234555555443 6677788889999999765433 11221 1111 12
Q ss_pred CCcEEEEeeCChhHHhh
Q 045709 275 VSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 275 g~s~IiiTtr~~~v~~~ 291 (337)
| ..||++|++...+..
T Consensus 178 g-~tii~vTHd~~~~~~ 193 (348)
T 3d31_A 178 K-LTVLHITHDQTEARI 193 (348)
T ss_dssp T-CEEEEEESCHHHHHH
T ss_pred C-CEEEEEeCCHHHHHH
Confidence 5 689999998765543
No 333
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.08 E-value=0.015 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998775
No 334
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.08 E-value=0.027 Score=48.13 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=28.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
++|+|.|.||+||||++..++..+. ..-..++-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCCC
Confidence 5788899999999999999998883 2223456666553
No 335
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.08 E-value=0.046 Score=44.40 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.4
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHH
Q 045709 166 GIVGLY-GMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLE 211 (337)
Q Consensus 166 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 211 (337)
++|+|+ +.||+||||++..++..+. ..-..++.++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la---~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS---RSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH---HCCCeEEEEECCCCCCHH
Confidence 577777 6799999999999988873 222346667776554433
No 336
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.05 E-value=0.017 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|.|..|+||||+++.+...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 337
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.04 E-value=0.041 Score=50.60 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCC-CCCc-EEEEEEecCc-cCHHHHHHHHHHHhCCCCc----cccCCCHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTP-NHFD-FVIWVVVSRD-LQLEKIQESIAKKIGLFNE----SWKNKSMQEK 236 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 236 (337)
+...++|+|.+|+|||+|+.++.++. ... ++-+ .++++-+... ....++...+...-..... ...+.+....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 45668899999999999999998876 221 1111 5566666543 3455666665543211100 0011222211
Q ss_pred ------HHHHHHHh---cCCcEEEEEecCC
Q 045709 237 ------AQEIFKIL---SKKKFVLLLDDIW 257 (337)
Q Consensus 237 ------~~~l~~~l---~~k~~LlVlDdv~ 257 (337)
.-.+.+++ +++..||++||+-
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12234444 3789999999985
No 338
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.02 E-value=0.033 Score=46.37 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.....|.|.|..|+||||+++.+...+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999887
No 339
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.00 E-value=0.085 Score=49.17 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=54.9
Q ss_pred HHHHhc-CCCeEEEEEecCCCcHHHHH-HHHHHhhcc---CCCCCc-EEEEEEecCcc-CHHHHHHHHHHHhCCCCcc--
Q 045709 157 WRCLME-EHAGIVGLYGMGGVGKTTLL-TQINNRFFD---TPNHFD-FVIWVVVSRDL-QLEKIQESIAKKIGLFNES-- 227 (337)
Q Consensus 157 ~~~L~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-- 227 (337)
++.|.. .+...++|+|.+|+|||+|| ..+.+.... ..++-+ .++++-+.... .+.++.+.+...-......
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV 232 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV 232 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEE
Confidence 344433 35678899999999999995 566666510 012233 46667776543 4555666665432111100
Q ss_pred --ccCCCHHHH------HHHHHHHh--cCCcEEEEEecCC
Q 045709 228 --WKNKSMQEK------AQEIFKIL--SKKKFVLLLDDIW 257 (337)
Q Consensus 228 --~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 257 (337)
..+.+.... .-.+.+++ +++..||++||+-
T Consensus 233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 011111111 11223333 5789999999985
No 340
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.00 E-value=0.012 Score=52.03 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.+++.|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45799999999999999999998653
No 341
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.99 E-value=0.13 Score=47.77 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCeEEEEEecCCCcHHHHH-HHHHHhhccCCCCCcEEEEEEecCcc-CHHHHHHHHHHHhCCCCccc----cCCCHH--
Q 045709 163 EHAGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFDFVIWVVVSRDL-QLEKIQESIAKKIGLFNESW----KNKSMQ-- 234 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~~-- 234 (337)
.+...++|+|..|+|||+|+ ..+.++. ..--.++++-+.... .+.++...+...-....... .+.+..
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 35678899999999999996 5666543 222245677776653 45566666554322211000 111111
Q ss_pred --------HHHHHHHHHhcCCcEEEEEecCC
Q 045709 235 --------EKAQEIFKILSKKKFVLLLDDIW 257 (337)
Q Consensus 235 --------~~~~~l~~~l~~k~~LlVlDdv~ 257 (337)
..++.++. +++..||++||+-
T Consensus 236 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 12233332 5899999999985
No 342
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.98 E-value=0.012 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 343
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.98 E-value=0.016 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999997653
No 344
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.96 E-value=0.016 Score=52.63 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....+++|+|++|+|||||.+.+..-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 46789999999999999999999763
No 345
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.96 E-value=0.042 Score=51.19 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCcHHHHH-HHHHHhhccCCCCCc-EEEEEEecCcc-CHHHHHHHHHHHhCCC---------CccccC-
Q 045709 164 HAGIVGLYGMGGVGKTTLL-TQINNRFFDTPNHFD-FVIWVVVSRDL-QLEKIQESIAKKIGLF---------NESWKN- 230 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~---------~~~~~~- 230 (337)
+...++|+|.+|+|||+|| ..+.+.. . .+ .++++-+.... ...++.+.+...-... +++...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 5667899999999999996 4666643 2 33 34666666543 3445544444321111 000000
Q ss_pred C----CHHHHHHHHHHHhcCCcEEEEEecCC
Q 045709 231 K----SMQEKAQEIFKILSKKKFVLLLDDIW 257 (337)
Q Consensus 231 ~----~~~~~~~~l~~~l~~k~~LlVlDdv~ 257 (337)
. ..-..++.++. +++..||++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 0 11123344444 5899999999974
No 346
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.94 E-value=0.0089 Score=53.61 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCC-------------------CCcEEEEEEecC----ccCH---------
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPN-------------------HFDFVIWVVVSR----DLQL--------- 210 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~~~----~~~~--------- 210 (337)
....+++|+|++|+|||||.+.++.-.....+ .-..+.++.-.. ..++
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 35679999999999999999999764410000 001233332110 0011
Q ss_pred ---------HHHHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCC--C
Q 045709 211 ---------EKIQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--R 272 (337)
Q Consensus 211 ---------~~~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~ 272 (337)
.+-..++++.++... ......+..+.++. |...|-.++-+|+||+--+..+.. .+...+.. .
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 109 NMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188 (353)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 123345666666532 11244565555443 667777888899999876543311 11111111 1
Q ss_pred CCCCcEEEEeeCChhHHhhc
Q 045709 273 TSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 273 ~~g~s~IiiTtr~~~v~~~~ 292 (337)
..| ..||++|++.+.+..+
T Consensus 189 ~~g-~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 189 RLG-VTLLVVSHDPADIFAI 207 (353)
T ss_dssp HHC-CEEEEEESCHHHHHHH
T ss_pred hcC-CEEEEEeCCHHHHHHh
Confidence 125 6899999997765443
No 347
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.93 E-value=0.029 Score=51.60 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCC--------CCCc-EEEEEEecCc-cCHHHHHHHHHHHhCCCC-----ccc
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTP--------NHFD-FVIWVVVSRD-LQLEKIQESIAKKIGLFN-----ESW 228 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~ 228 (337)
+...++|+|.+|+|||+|+.++.++. ... ++-+ .++++-+... ....++...+...-.... ...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 56678899999999999999998876 221 1222 5566666543 345555555544211110 000
Q ss_pred cCCCHHH-----HHHHHHHHh---cCCcEEEEEecCC
Q 045709 229 KNKSMQE-----KAQEIFKIL---SKKKFVLLLDDIW 257 (337)
Q Consensus 229 ~~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv~ 257 (337)
+...... ..-.+.+++ +++..||++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111111 112234444 3789999999985
No 348
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.92 E-value=0.033 Score=49.86 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998754
No 349
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.92 E-value=0.04 Score=50.91 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCC--CCcEEEEEEecCc-cCHHHHHHHHHHHhCCCCcc----ccCCCHHH-
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPN--HFDFVIWVVVSRD-LQLEKIQESIAKKIGLFNES----WKNKSMQE- 235 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 235 (337)
+...++|+|.+|+|||+|+.+++++. .... .-+.++++-+... ....++...+...-...... ..+.+...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 56778899999999999999999887 2211 1135666666544 34566666666542211100 01111111
Q ss_pred -----HHHHHHHHh---cCCcEEEEEecCC
Q 045709 236 -----KAQEIFKIL---SKKKFVLLLDDIW 257 (337)
Q Consensus 236 -----~~~~l~~~l---~~k~~LlVlDdv~ 257 (337)
..-.+.+++ +++..||++||+-
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 112233343 3789999999964
No 350
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.90 E-value=0.016 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 351
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.90 E-value=0.017 Score=51.62 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||.+.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999886
No 352
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.90 E-value=0.015 Score=45.05 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 353
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.89 E-value=0.024 Score=49.63 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+++|.+.+ ...+++++|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l---~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYL---EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHT---TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhc---cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 55565554 35689999999999999999998 54
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.88 E-value=0.062 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+....++|+|+.|+|||||++.+...+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 467899999999999999999997765
No 355
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.025 Score=51.14 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
....+++|+|++|+|||||++.+...... ..-..+.++.-.-..... ...+.-....-..+.......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFK-------HKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCCSCCC-------CSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHhhhhc-------cCceEEEeeecCCCHHHHHHHHHH
Confidence 45789999999999999999999876621 101222232211000000 000000000000011112345666
Q ss_pred HhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCChh
Q 045709 243 ILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTREFG 287 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~~~ 287 (337)
.|...+-+|++|++.+.+.+..+.... ..| ..|+.|+...+
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g-~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETG-HLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTT-CEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcC-CEEEEEECcch
Confidence 776677788899887554433322111 235 56777777654
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.018 Score=45.84 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=24.9
Q ss_pred HHHHHHhc-CCCeEEEEEecCCCcHHHHHHHHHH
Q 045709 155 RVWRCLME-EHAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 155 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
++.+.+.. .+...|.|+|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34343444 4567899999999999999988864
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.88 E-value=0.017 Score=47.12 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|.|++|+||||||..+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45778999999999999999998765
No 358
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.86 E-value=0.019 Score=51.09 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||.+.+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999998655
No 359
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.79 E-value=0.017 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|+|.+|+|||||++.+...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998776
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.79 E-value=0.025 Score=45.17 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998654
No 361
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.74 E-value=0.033 Score=46.38 Aligned_cols=38 Identities=29% Similarity=0.144 Sum_probs=26.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
-.|.+.|.||+||||++..+..... ...++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL--RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCC
Confidence 3578899999999999999988873 22333 44455544
No 362
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.74 E-value=0.038 Score=47.26 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHHHHHhcC--CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 154 DRVWRCLMEE--HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 154 ~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-+..+|... +...+.++|++|+|||.||..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455555543 24579999999999999999998864
No 363
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.73 E-value=0.018 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 364
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.72 E-value=0.45 Score=39.74 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+.|+|..|.|||.+|..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7889999999999998887654
No 365
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.71 E-value=0.036 Score=46.57 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=29.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCH
Q 045709 168 VGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQL 210 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 210 (337)
|+|.|.||+||||+|..++..+. ..-..++-++.....++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcCh
Confidence 56699999999999999999883 22245666776554443
No 366
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.70 E-value=0.023 Score=51.57 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++|.|.|+.|+|||||+..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3689999999999999999998876
No 367
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.69 E-value=0.83 Score=40.70 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...++++|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999987643
No 368
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.68 E-value=0.03 Score=48.48 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=28.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR 206 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 206 (337)
.++|+|.|.||+||||+|..++..+.+ .-..++-++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~---~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE---MGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 367888999999999999999888731 222455666554
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.018 Score=53.60 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+++|+|++|+|||||++.++.-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 466899999999999999999997754
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.023 Score=45.64 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 371
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.64 E-value=0.023 Score=45.02 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998653
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.59 E-value=0.024 Score=44.77 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999997643
No 373
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.58 E-value=0.02 Score=44.56 Aligned_cols=24 Identities=38% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-|.++|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 374
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.58 E-value=0.031 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=20.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.|-|+.|+||||+++.+...+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 375
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.54 E-value=0.021 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998765
No 376
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.54 E-value=0.035 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
.+...|+++|.+|+|||||...+.+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455789999999999999999865
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.54 E-value=0.018 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+++|+|++|+|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999999998866
No 378
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.53 E-value=0.02 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 379
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.53 E-value=0.019 Score=45.21 Aligned_cols=25 Identities=36% Similarity=0.351 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|.|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.51 E-value=0.015 Score=47.61 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
.....++|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999987643
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.50 E-value=0.024 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhh
Q 045709 168 VGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 168 i~I~G~~GiGKTtLa~~v~~~~ 189 (337)
|.++|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.47 E-value=0.021 Score=44.65 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-.|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 383
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.47 E-value=0.023 Score=44.20 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.025 Score=47.58 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=32.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESI 217 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 217 (337)
...++.|.|.+|+|||+||.+++.+.. ...-..++|++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHHH
Confidence 567999999999999999998765431 12223466666543 344444433
No 385
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.47 E-value=0.023 Score=44.09 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987654
No 386
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.47 E-value=0.022 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998754
No 387
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.022 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.45 E-value=0.022 Score=44.50 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 389
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.44 E-value=0.025 Score=47.35 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++|.|++|+||||+|+.+...+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998877
No 390
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.43 E-value=0.028 Score=53.16 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....+|.++|++|+||||+|+.+...+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998876
No 391
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.43 E-value=0.051 Score=51.69 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=31.6
Q ss_pred cccchhhHHHHHHHH--hcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 146 VVGLQLTFDRVWRCL--MEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 146 ~vGr~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+.|.+....+.+.. ......+|.+.|++|+||||+|+.+...+
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 444444445555544 22346789999999999999999998876
No 392
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.41 E-value=0.022 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999998887654
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.41 E-value=0.031 Score=43.38 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.++.+|+|++|+||||+...++--.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999886544
No 394
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.41 E-value=0.018 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|.|+|.+|+||||++..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 395
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.40 E-value=0.023 Score=44.32 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5789999999999999988543
No 396
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.39 E-value=0.026 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
+...|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999765
No 397
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.022 Score=44.47 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998643
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.36 E-value=0.024 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4578999999999999999998764
No 399
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.36 E-value=0.029 Score=46.16 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998765
No 400
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.36 E-value=0.039 Score=48.27 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
++++...+. ..+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 555555553 4689999999999999999997654
No 401
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.35 E-value=0.023 Score=44.90 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999987754
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.35 E-value=0.024 Score=44.22 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358899999999999999997654
No 403
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.35 E-value=0.022 Score=44.56 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 045709 167 IVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~ 187 (337)
-|.|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999864
No 404
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.34 E-value=0.024 Score=44.74 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-|.|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997654
No 405
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.34 E-value=0.026 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 468899999999999999987643
No 406
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.31 E-value=0.022 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999998754
No 407
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.3 Score=40.66 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHH
Q 045709 153 FDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQIN 186 (337)
Q Consensus 153 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~ 186 (337)
..+++..+.. ...+.|.|..|+||||+...+.
T Consensus 66 q~~~i~~i~~--g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQ--NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhc--CCEEEEEeCCCCCcHHhHHHHH
Confidence 3444444433 3688999999999998665553
No 408
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.30 E-value=0.042 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|.|++|+||||+|+.+...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 409
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.023 Score=53.93 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCC----------------------------cEEEEEEecC---c-----
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHF----------------------------DFVIWVVVSR---D----- 207 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----------------------------~~~~wv~~~~---~----- 207 (337)
+..+++|+|++|+|||||.+.+........+.. ...+...... .
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence 467999999999999999999976441111110 0001111100 0
Q ss_pred cCHHH---------HHHHHHHHhCCCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccc------ccccCC
Q 045709 208 LQLEK---------IQESIAKKIGLFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDL------DQVGLP 268 (337)
Q Consensus 208 ~~~~~---------~~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~ 268 (337)
.+..+ ....++..++... ......+..+.+.. |...|..++-+|+||+--+..+. ..+...
T Consensus 104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~ 183 (538)
T 3ozx_A 104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183 (538)
T ss_dssp SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 01111 2344556665432 12244555554443 66677788889999998665332 122222
Q ss_pred CCCCCCCCcEEEEeeCChhHHhhc
Q 045709 269 IPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 269 l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
+. .| ..||++|++......+
T Consensus 184 l~---~g-~tii~vsHdl~~~~~~ 203 (538)
T 3ozx_A 184 LL---KN-KYVIVVDHDLIVLDYL 203 (538)
T ss_dssp HC---TT-SEEEEECSCHHHHHHH
T ss_pred Hh---CC-CEEEEEEeChHHHHhh
Confidence 22 25 6788999987665443
No 410
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.29 E-value=0.015 Score=49.75 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|+|.|..|+||||+++.+...+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998765
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.28 E-value=0.029 Score=44.92 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998764
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.28 E-value=0.025 Score=45.39 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999997776544
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.26 E-value=0.028 Score=45.32 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|+++|.+|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998743
No 414
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.24 E-value=0.037 Score=45.28 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+|+|.|+.|+||||+++.+...+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999877
No 415
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.21 E-value=0.026 Score=45.32 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4568899999999999999887654
No 416
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.20 E-value=0.028 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 417
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.20 E-value=0.024 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCeE--EEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGI--VGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~v--i~I~G~~GiGKTtLa~~v~~~ 188 (337)
...+ ++|+|.+|+|||||.+.++..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4456 999999999999999999764
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.19 E-value=0.028 Score=53.41 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC-----------Cc----------------EEEEEE--ecCc-----cC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-----------FD----------------FVIWVV--VSRD-----LQ 209 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------f~----------------~~~wv~--~~~~-----~~ 209 (337)
...+++|+|.+|+|||||++.+........+. +. .+.++. .... .+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 56799999999999999999998754111111 00 011111 0000 02
Q ss_pred HHH---------HHHHHHHHhCCCCc---cccCCCHHHHHH-HHHHHhcCCcEEEEEecCCCccccc------cccCCCC
Q 045709 210 LEK---------IQESIAKKIGLFNE---SWKNKSMQEKAQ-EIFKILSKKKFVLLLDDIWELVDLD------QVGLPIP 270 (337)
Q Consensus 210 ~~~---------~~~~i~~~l~~~~~---~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~ 270 (337)
+.+ -..+++..++.... .....+..+.+. .|...|..++-+|+||+--+..+.. .+...+.
T Consensus 126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 205 (538)
T 1yqt_A 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205 (538)
T ss_dssp HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 221 12456666665321 123445555444 3666777888899999986653321 1211122
Q ss_pred CCCCCCcEEEEeeCChhHHhh
Q 045709 271 SRTSVSNKVVFTTREFGVCGQ 291 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~ 291 (337)
. .| ..||++|++......
T Consensus 206 ~--~g-~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 206 E--EG-KSVLVVEHDLAVLDY 223 (538)
T ss_dssp H--TT-CEEEEECSCHHHHHH
T ss_pred h--cC-CEEEEEeCCHHHHHH
Confidence 1 25 689999998776544
No 419
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.18 E-value=0.03 Score=45.28 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
--|.|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998754
No 420
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.17 E-value=0.083 Score=47.29 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....++...|.||+||||++..++..+
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 335566677999999999999988777
No 421
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.16 E-value=0.14 Score=57.26 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=47.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHHHh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFKIL 244 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 244 (337)
.+-+.++|++|+|||++|+.+.... ..+ ....++.+...+...+...+-..+...... ...-.. -.-
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~-~g~~~~-------P~~ 1333 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTS-KGLTLL-------PKS 1333 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEET-TTEEEE-------EBS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhcccc-CCcccc-------CCC
Confidence 3577899999999999998877654 223 345677777766666665555544321100 000000 000
Q ss_pred cCCcEEEEEecCC
Q 045709 245 SKKKFVLLLDDIW 257 (337)
Q Consensus 245 ~~k~~LlVlDdv~ 257 (337)
.+++++|.+||+.
T Consensus 1334 ~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1334 DIKNLVLFCDEIN 1346 (2695)
T ss_dssp SSSCEEEEEETTT
T ss_pred CCceEEEEecccc
Confidence 3678899999975
No 422
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.16 E-value=0.031 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=24.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...++|+|.+|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998876
No 423
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.14 E-value=0.038 Score=49.23 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999997655
No 424
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.13 E-value=0.028 Score=44.31 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 425
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.12 E-value=0.029 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|.|+|.+|+|||||+..+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998754
No 426
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.12 E-value=0.028 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 427
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.10 E-value=0.031 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..+++|+|++|+|||||++.+....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4689999999999999999998755
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.09 E-value=0.03 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-.|.|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.09 E-value=0.027 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999987654
No 430
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.08 E-value=0.029 Score=44.59 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-.|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568899999999999999998654
No 431
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.07 E-value=0.077 Score=47.00 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....++.+.|.||+||||++..++...
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345677778999999999999998877
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.034 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4568899999999999999998765
No 433
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.05 E-value=0.03 Score=44.34 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998544
No 434
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.037 Score=44.66 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678999999999999999998754
No 435
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.04 E-value=0.03 Score=53.17 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=70.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--Cc-EEEEEEecC----ccCHHHHHHHH--------------HHHhC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--FD-FVIWVVVSR----DLQLEKIQESI--------------AKKIG 222 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-~~~wv~~~~----~~~~~~~~~~i--------------~~~l~ 222 (337)
...+++|+|++|+|||||++.++.......+. +. .+.|+.-.. ..++.+.+... +..++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998865211111 11 244443211 12333332221 11222
Q ss_pred CCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCcccccc---ccCCCCCC--CCCCcEEEEeeCChhHHhhc
Q 045709 223 LFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLDQ---VGLPIPSR--TSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~~---l~~~l~~~--~~g~s~IiiTtr~~~v~~~~ 292 (337)
... ......+..+.++. |...|..++-+|+||+--+..+... +...+... ..| ..||++|++.+.+..+
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~ 468 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYV 468 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHH
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHh
Confidence 211 11234555555544 5667788899999999866543221 11111110 124 6789999987765543
No 436
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.03 E-value=0.088 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=21.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...++.+.|.||+||||+|..++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 34566666999999999999988776
No 437
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.01 E-value=0.03 Score=44.45 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987654
No 438
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.00 E-value=0.077 Score=43.56 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=30.3
Q ss_pred EEEEE-ecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHH
Q 045709 167 IVGLY-GMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEK 212 (337)
Q Consensus 167 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 212 (337)
+|+|+ +.||+||||++..++..+. . .- .++.++.....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la-~--~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLA-L--QG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-T--TS-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-h--cC-CEEEEECCCCCCHHH
Confidence 55665 7899999999999998883 2 22 677777776654443
No 439
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.00 E-value=0.032 Score=44.56 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 440
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.99 E-value=0.04 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.++|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999997654
No 441
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.98 E-value=0.032 Score=44.81 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999988754
No 442
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.97 E-value=0.038 Score=51.58 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998876
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.96 E-value=0.022 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.++|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998754
No 444
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.95 E-value=0.031 Score=44.34 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|.|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998654
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.94 E-value=0.028 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHH
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
.+..-|.|+|.+|+|||||+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4556799999999999999999854
No 446
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.93 E-value=0.032 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999987653
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.93 E-value=0.11 Score=42.91 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|.+-|..|+||||+++.+...+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999988
No 448
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.93 E-value=0.031 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988754
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.92 E-value=0.03 Score=44.62 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+...|.++|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778999999999999999987644
No 450
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.91 E-value=0.049 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+++|+|++|+|||||++.+..-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467899999999999999999997654
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.89 E-value=0.025 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
....|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999853
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.89 E-value=0.079 Score=43.45 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..|+|=|..|+||||+++.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999999988
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.89 E-value=0.028 Score=53.32 Aligned_cols=127 Identities=16% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C--cEEEEEEecC----ccCHHHHHH---------------HHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F--DFVIWVVVSR----DLQLEKIQE---------------SIAKK 220 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f--~~~~wv~~~~----~~~~~~~~~---------------~i~~~ 220 (337)
...+++|+|++|+|||||++.++.-.....+. + ..+.++.-.. ..++.+.+. .++..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~ 372 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR 372 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 46789999999999999999998755211111 1 1122222110 112222221 11122
Q ss_pred hCCC---CccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCCCCcEEEEeeCChhHHh
Q 045709 221 IGLF---NESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTSVSNKVVFTTREFGVCG 290 (337)
Q Consensus 221 l~~~---~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~g~s~IiiTtr~~~v~~ 290 (337)
++.. .......|..+.++. |...|..++-+|+||+--+..+.. .+...+.. ..| ..||++|.+.+.+.
T Consensus 373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~-~~g-~tvi~vsHdl~~~~ 450 (538)
T 3ozx_A 373 LNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR-ERK-AVTFIIDHDLSIHD 450 (538)
T ss_dssp TTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-HTT-CEEEEECSCHHHHH
T ss_pred cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHH
Confidence 2211 111234555555443 566777888899999876653321 11111111 134 68888999877665
Q ss_pred hc
Q 045709 291 QM 292 (337)
Q Consensus 291 ~~ 292 (337)
.+
T Consensus 451 ~~ 452 (538)
T 3ozx_A 451 YI 452 (538)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 454
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.88 E-value=0.032 Score=45.21 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987654
No 455
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.033 Score=43.99 Aligned_cols=25 Identities=44% Similarity=0.453 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.++|.+|+|||||...+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999997754
No 456
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.86 E-value=0.19 Score=47.43 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=38.0
Q ss_pred HHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCc-cCHHHHHHH
Q 045709 157 WRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRD-LQLEKIQES 216 (337)
Q Consensus 157 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 216 (337)
++.|.. .+...++|.|..|+|||+|+..+.+.. +-+.++++-+... ....+++..
T Consensus 223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 444443 467889999999999999999998865 2256777777654 234444433
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.86 E-value=0.034 Score=53.58 Aligned_cols=127 Identities=15% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC--C-cEEEEEEecC----ccCHHHHH--------------HHHHHHhC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH--F-DFVIWVVVSR----DLQLEKIQ--------------ESIAKKIG 222 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f-~~~~wv~~~~----~~~~~~~~--------------~~i~~~l~ 222 (337)
...+++|+|++|+|||||++.++.......+. + ..+.|+.-.. ..++.+.+ ..++..++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998865211111 1 1244443211 11232222 23444455
Q ss_pred CCC---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCCCCCCCCcEEEEeeCChhHHhhc
Q 045709 223 LFN---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIPSRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 223 ~~~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
... ......+..+.++. |...|...+-+|+||+--+..+.. .+...+.. ..| ..||++|++...+..+
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g-~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNE-KTALVVEHDVLMIDYV 538 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTT-CEEEEECSCHHHHHHH
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCC-CEEEEEeCCHHHHHHh
Confidence 432 12244566555544 566778888999999976653322 11111111 134 6899999987766543
No 458
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.85 E-value=0.032 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|+|+|.+|+|||||+..+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999986543
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.84 E-value=0.034 Score=45.46 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998764
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.84 E-value=0.037 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+..-|+|+|.+|+|||||+..+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34678999999999999999998765
No 461
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.037 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999987654
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.83 E-value=0.033 Score=45.21 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999997754
No 463
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.83 E-value=0.035 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
+...|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999998753
No 464
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.035 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 465
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.81 E-value=0.035 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+++|+|++|+|||||++.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 899999999999999999998755
No 466
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.78 E-value=0.03 Score=45.30 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...-|.++|.+|+|||||+..+.+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 34578899999999999999776643
No 467
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.75 E-value=0.035 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998764
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.73 E-value=0.036 Score=44.59 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 469
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.71 E-value=0.29 Score=46.07 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=39.2
Q ss_pred HHHHhc-CCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccC-HHHHHHHH
Q 045709 157 WRCLME-EHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQ-LEKIQESI 217 (337)
Q Consensus 157 ~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 217 (337)
++.|.. .+...++|+|..|+|||+|+..+.+.. +-+.++++-+..... ..++...+
T Consensus 218 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 218 IDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 344433 367889999999999999999987754 224778888776554 44444443
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.71 E-value=0.037 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 471
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.70 E-value=0.064 Score=43.79 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 163 EHAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 163 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.+..+|+|+|++|+||+|+|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356799999999999999999997755
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.041 Score=44.31 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 473
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.67 E-value=0.037 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 474
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.67 E-value=0.037 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998754
No 475
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.67 E-value=0.04 Score=44.12 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998654
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.67 E-value=0.056 Score=42.94 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNR 188 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~ 188 (337)
...-+.|.|.+|+||||||..+..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3567889999999999999999774
No 477
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.64 E-value=0.053 Score=48.93 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCeEEEEEe-cCCCcHHHHHHHHHHhhccCCCCCcEEEEEEec
Q 045709 164 HAGIVGLYG-MGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVS 205 (337)
Q Consensus 164 ~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 205 (337)
+.++|+|+| .||+||||+|..++..+. ..-..++.+++.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La---~~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHA---NMGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHH---HHTCCEEEEECC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHH---hCCCCEEEEECC
Confidence 568899985 899999999999988773 222346666654
No 478
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.60 E-value=0.037 Score=44.91 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568899999999999999987543
No 479
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.60 E-value=0.039 Score=44.33 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||...+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998654
No 480
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.60 E-value=0.046 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|+++|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997654
No 481
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.58 E-value=0.04 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999987654
No 482
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.57 E-value=0.039 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
--|.|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997654
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.56 E-value=0.038 Score=46.35 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998754
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.041 Score=52.98 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=69.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhccCCCC-C--cEEEEEEecC----ccCHH--------------HHHHHHHHHhCCC
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRFFDTPNH-F--DFVIWVVVSR----DLQLE--------------KIQESIAKKIGLF 224 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f--~~~~wv~~~~----~~~~~--------------~~~~~i~~~l~~~ 224 (337)
.+++|+|++|+|||||++.++.-.....+. . ..+.++.-.. ..++. .....++..++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998755211111 0 0122322110 01111 2233445555543
Q ss_pred C---ccccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc---cccCCCCC--CCCCCcEEEEeeCChhHHhhc
Q 045709 225 N---ESWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD---QVGLPIPS--RTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 225 ~---~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~---~l~~~l~~--~~~g~s~IiiTtr~~~v~~~~ 292 (337)
. ......|..+.++. |...|..++-+|+||+--+..+.. .+...+.. ...| ..||++|++.+.+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHh
Confidence 2 12245566665554 667788889999999876553321 11111111 1125 6899999987766543
No 485
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.53 E-value=0.041 Score=44.09 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-.|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.53 E-value=0.041 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhh
Q 045709 166 GIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 166 ~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.-|.|+|.+|+|||||...+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999997754
No 487
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.53 E-value=0.038 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...|.|+|.+|+|||||...+....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997643
No 488
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.53 E-value=0.038 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..--|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987643
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.50 E-value=0.042 Score=52.95 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCC-----------Cc----------------EEEEEE--ecCc-----cC
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNH-----------FD----------------FVIWVV--VSRD-----LQ 209 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-----------f~----------------~~~wv~--~~~~-----~~ 209 (337)
...+++|+|++|+|||||++.+........+. |. .+.++. +... .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 56799999999999999999997644111111 00 011110 0000 01
Q ss_pred HHH---------HHHHHHHHhCCCCc---cccCCCHHHHHHH-HHHHhcCCcEEEEEecCCCccccc------cccCCCC
Q 045709 210 LEK---------IQESIAKKIGLFNE---SWKNKSMQEKAQE-IFKILSKKKFVLLLDDIWELVDLD------QVGLPIP 270 (337)
Q Consensus 210 ~~~---------~~~~i~~~l~~~~~---~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~~------~l~~~l~ 270 (337)
+.+ ...+++..++.... .....+..+.++. |...|..++=+|+||+.-+..+.. .+...+.
T Consensus 196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 211 12456666665421 1234555555443 666777888899999987654321 1211222
Q ss_pred CCCCCCcEEEEeeCChhHHhhc
Q 045709 271 SRTSVSNKVVFTTREFGVCGQM 292 (337)
Q Consensus 271 ~~~~g~s~IiiTtr~~~v~~~~ 292 (337)
. .| ..||++|++...+..+
T Consensus 276 ~--~g-~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 276 N--EG-KAVLVVEHDLAVLDYL 294 (607)
T ss_dssp H--TT-CEEEEECSCHHHHHHH
T ss_pred h--cC-CEEEEEecChHHHHhh
Confidence 1 25 7899999997765543
No 490
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.49 E-value=0.04 Score=44.57 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...-|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999997654
No 491
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.49 E-value=0.051 Score=52.31 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
...+|.|.|++|+||||+|+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998876
No 492
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.48 E-value=0.096 Score=46.23 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
..++...|.||+||||+|..++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 3566777999999999999988776
No 493
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.043 Score=45.27 Aligned_cols=23 Identities=39% Similarity=0.359 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHH
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINN 187 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~ 187 (337)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 494
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.43 E-value=0.043 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhh
Q 045709 167 IVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 167 vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
-|.|+|.+|+|||+|+..+.++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 47899999999999999987643
No 495
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.43 E-value=0.088 Score=51.22 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhcCCCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecCccCHHHHHHHHH
Q 045709 151 LTFDRVWRCLMEEHAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSRDLQLEKIQESIA 218 (337)
Q Consensus 151 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 218 (337)
...+.+...|.. ..+..|.|++|+|||+.+..+...... . ...+.++...+..+..++..+.
T Consensus 193 ~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~--~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVK--Q--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHH--T--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHh--C--CCeEEEEcCchHHHHHHHHHHH
Confidence 344556555543 357789999999999755554444422 1 2356777776666666666654
No 496
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.41 E-value=0.08 Score=48.87 Aligned_cols=43 Identities=30% Similarity=0.401 Sum_probs=32.6
Q ss_pred ccchhhHHHHHHHHhcC-----------CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 147 VGLQLTFDRVWRCLMEE-----------HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 147 vGr~~~~~~l~~~L~~~-----------~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.|.++.++.|.+.+... ....++|+|.+|+|||||...+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 46677777777666421 23579999999999999999998754
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.39 E-value=0.053 Score=44.61 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999997754
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.38 E-value=0.042 Score=45.15 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=20.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 165 AGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 165 ~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
.--|.|+|.+|+|||||+..+.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999987643
No 499
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.38 E-value=0.082 Score=44.06 Aligned_cols=107 Identities=13% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhccCCCCCcEEEEEEecC-ccCHHHHHHHHHHHhCCCCccccCCCHHHHHHHHHH
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRFFDTPNHFDFVIWVVVSR-DLQLEKIQESIAKKIGLFNESWKNKSMQEKAQEIFK 242 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 242 (337)
...+..++|.-|.||||.+.....+.. .......++-..-+ .+. ..+...++.........+..+ +.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~Ryg-----~~i~sr~G~~~~a~~i~~~~d----i~~ 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYS-----SSFCTHDRNTMEALPACLLRD----VAQ 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTCCCC----------------CEEEEESSGGG----GHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCCccch-----HHHHhhcCCeeEEEecCCHHH----HHH
Confidence 357889999999999987777766662 23344444332222 222 234555544322111112222 222
Q ss_pred HhcCCcEEEEEecCCCccccccccCCCCCCCCCCcEEEEeeCC
Q 045709 243 ILSKKKFVLLLDDIWELVDLDQVGLPIPSRTSVSNKVVFTTRE 285 (337)
Q Consensus 243 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~g~s~IiiTtr~ 285 (337)
.. ++--+|++|++.-.....++...+.+ .| -.||+|-++
T Consensus 87 ~~-~~~dvViIDEaQF~~~v~el~~~l~~--~g-i~VI~~GL~ 125 (234)
T 2orv_A 87 EA-LGVAVIGIDEGQFFPDIVEFCEAMAN--AG-KTVIVAALD 125 (234)
T ss_dssp HH-TTCSEEEESSGGGCTTHHHHHHHHHH--TT-CEEEEECCS
T ss_pred Hh-ccCCEEEEEchhhhhhHHHHHHHHHh--CC-CEEEEEecc
Confidence 22 23339999998654334443332322 45 688988887
No 500
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.37 E-value=0.048 Score=45.30 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhh
Q 045709 164 HAGIVGLYGMGGVGKTTLLTQINNRF 189 (337)
Q Consensus 164 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 189 (337)
....|.|+|.+|+|||||+..+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999987653
Done!