Query 045712
Match_columns 268
No_of_seqs 183 out of 794
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.1E-35 2.4E-40 262.9 27.0 164 96-267 49-217 (219)
2 PF03168 LEA_2: Late embryogen 99.4 1.2E-12 2.7E-17 100.3 10.5 98 141-244 1-100 (101)
3 smart00769 WHy Water Stress an 98.4 7.5E-06 1.6E-10 63.6 11.9 84 132-221 11-96 (100)
4 PF07092 DUF1356: Protein of u 97.4 0.0042 9.1E-08 55.7 13.7 99 91-195 82-182 (238)
5 PF12751 Vac7: Vacuolar segreg 97.4 0.0009 1.9E-08 63.6 9.3 87 76-171 295-381 (387)
6 PLN03160 uncharacterized prote 97.3 0.0011 2.5E-08 58.8 8.8 101 80-188 36-148 (219)
7 COG5608 LEA14-like dessication 97.3 0.03 6.5E-07 47.0 16.1 116 112-241 31-149 (161)
8 TIGR03602 streptolysinS bacter 89.9 0.053 1.2E-06 36.8 -1.2 9 78-86 25-33 (56)
9 KOG3950 Gamma/delta sarcoglyca 81.1 2.9 6.2E-05 37.9 4.9 22 133-154 105-126 (292)
10 PF14155 DUF4307: Domain of un 72.8 9.2 0.0002 30.4 5.2 63 121-194 36-100 (112)
11 TIGR02588 conserved hypothetic 71.3 16 0.00035 29.6 6.3 49 95-150 13-63 (122)
12 KOG4331 Polytopic membrane pro 70.5 3 6.5E-05 43.6 2.4 23 88-110 154-176 (865)
13 PRK10893 lipopolysaccharide ex 67.5 46 0.001 28.9 8.9 30 110-141 37-66 (192)
14 PF12273 RCR: Chitin synthesis 67.5 4.8 0.0001 32.6 2.6 7 82-88 1-7 (130)
15 PRK07021 fliL flagellar basal 65.8 20 0.00043 30.1 6.1 16 153-169 78-93 (162)
16 PRK05529 cell division protein 65.4 13 0.00029 33.6 5.3 15 113-127 58-72 (255)
17 PF11906 DUF3426: Protein of u 65.1 39 0.00084 27.5 7.6 58 116-175 48-106 (149)
18 PF05478 Prominin: Prominin; 61.6 5 0.00011 42.3 2.0 22 81-102 138-159 (806)
19 PF09624 DUF2393: Protein of u 61.5 70 0.0015 26.1 8.6 63 101-173 33-97 (149)
20 PRK13183 psbN photosystem II r 57.0 14 0.0003 24.9 2.8 24 88-111 9-32 (46)
21 PF09911 DUF2140: Uncharacteri 55.2 16 0.00034 31.7 3.8 29 86-114 3-31 (187)
22 PF09604 Potass_KdpF: F subuni 53.0 8.5 0.00018 22.6 1.2 21 92-112 3-23 (25)
23 PF10177 DUF2371: Uncharacteri 52.9 23 0.0005 29.5 4.2 23 83-105 37-59 (141)
24 PF02468 PsbN: Photosystem II 52.9 12 0.00027 24.8 2.0 23 89-111 7-29 (43)
25 CHL00020 psbN photosystem II p 52.7 15 0.00033 24.3 2.5 24 88-111 6-29 (43)
26 COG1580 FliL Flagellar basal b 50.3 53 0.0011 27.8 6.1 26 84-109 17-42 (159)
27 COG5353 Uncharacterized protei 50.2 8.5 0.00018 32.4 1.2 30 82-111 4-33 (161)
28 PRK06531 yajC preprotein trans 45.2 12 0.00025 30.1 1.2 13 100-112 11-23 (113)
29 PHA02650 hypothetical protein; 45.0 20 0.00043 26.9 2.3 22 86-107 49-70 (81)
30 PHA02819 hypothetical protein; 44.4 21 0.00046 26.1 2.4 22 86-107 46-67 (71)
31 PF00927 Transglut_C: Transglu 44.3 61 0.0013 24.7 5.2 62 131-193 10-75 (107)
32 PF11395 DUF2873: Protein of u 44.1 16 0.00034 23.6 1.4 18 92-109 15-32 (43)
33 PHA03054 IMV membrane protein; 43.9 22 0.00047 26.1 2.3 22 86-107 48-69 (72)
34 COG5074 t-SNARE complex subuni 43.8 16 0.00035 33.0 2.0 14 82-95 250-263 (280)
35 PF10907 DUF2749: Protein of u 41.8 26 0.00057 25.3 2.4 18 95-112 11-28 (66)
36 TIGR02115 potass_kdpF K+-trans 41.6 8.8 0.00019 22.7 0.0 20 93-112 3-22 (26)
37 PF05545 FixQ: Cbb3-type cytoc 41.5 14 0.00031 24.6 1.1 22 92-113 13-34 (49)
38 PHA02844 putative transmembran 40.9 26 0.00057 25.9 2.4 18 90-107 52-69 (75)
39 PRK14759 potassium-transportin 40.1 19 0.00041 21.9 1.3 21 92-112 7-27 (29)
40 COG5009 MrcA Membrane carboxyp 38.3 20 0.00043 37.6 1.9 35 83-117 4-38 (797)
41 PF12505 DUF3712: Protein of u 37.9 2E+02 0.0044 22.7 9.0 69 169-242 2-72 (125)
42 PHA02692 hypothetical protein; 37.8 37 0.0008 24.9 2.7 11 97-107 57-67 (70)
43 PF14283 DUF4366: Domain of un 36.2 26 0.00056 31.2 2.1 24 93-116 167-190 (218)
44 PHA02975 hypothetical protein; 35.5 35 0.00075 24.9 2.3 22 86-107 44-65 (69)
45 PF13396 PLDc_N: Phospholipase 34.9 52 0.0011 21.3 3.0 19 94-112 28-46 (46)
46 COG4698 Uncharacterized protei 34.8 39 0.00084 29.4 2.9 30 101-130 26-58 (197)
47 COG5294 Uncharacterized protei 34.7 1E+02 0.0022 24.7 5.0 17 134-150 50-66 (113)
48 KOG2621 Prohibitins and stomat 34.7 3.5E+02 0.0075 25.2 9.2 35 114-148 90-131 (288)
49 PRK07718 fliL flagellar basal 34.7 64 0.0014 26.5 4.1 9 160-168 68-76 (142)
50 PF06092 DUF943: Enterobacteri 34.0 29 0.00063 29.4 2.0 16 96-111 13-28 (157)
51 PF06692 MNSV_P7B: Melon necro 33.5 24 0.00051 24.7 1.1 9 108-116 31-39 (61)
52 COG5178 PRP8 U5 snRNP spliceos 32.8 33 0.00071 37.9 2.5 33 212-244 319-354 (2365)
53 PF04573 SPC22: Signal peptida 32.6 1.7E+02 0.0037 25.1 6.6 11 109-119 32-42 (175)
54 PRK01844 hypothetical protein; 32.3 44 0.00096 24.6 2.5 16 90-105 8-23 (72)
55 PF05478 Prominin: Prominin; 31.1 47 0.001 35.1 3.4 17 90-106 143-159 (806)
56 PF08113 CoxIIa: Cytochrome c 30.7 32 0.00068 21.6 1.2 14 94-107 11-24 (34)
57 PF02009 Rifin_STEVOR: Rifin/s 30.6 28 0.0006 32.6 1.4 20 91-110 261-280 (299)
58 PF07787 DUF1625: Protein of u 29.3 55 0.0012 29.3 3.1 12 100-111 237-248 (248)
59 PF09865 DUF2092: Predicted pe 28.9 4.1E+02 0.0089 23.5 9.0 40 131-171 34-74 (214)
60 PF04790 Sarcoglycan_1: Sarcog 28.6 42 0.0009 30.8 2.2 26 133-158 83-110 (264)
61 PF01102 Glycophorin_A: Glycop 28.6 36 0.00077 27.6 1.6 27 94-120 74-101 (122)
62 PF04906 Tweety: Tweety; Inte 28.3 39 0.00085 32.8 2.1 6 83-88 61-66 (406)
63 cd01324 cbb3_Oxidase_CcoQ Cyto 28.1 47 0.001 22.4 1.9 20 94-113 16-35 (48)
64 PRK00523 hypothetical protein; 27.9 58 0.0013 24.0 2.4 15 91-105 10-24 (72)
65 PF00287 Na_K-ATPase: Sodium / 26.9 34 0.00073 31.7 1.3 25 94-118 51-75 (289)
66 PF10694 DUF2500: Protein of u 26.9 3E+02 0.0066 21.3 6.9 42 112-154 31-81 (110)
67 COG2991 Uncharacterized protei 26.8 73 0.0016 23.6 2.8 20 86-105 4-23 (77)
68 COG4736 CcoQ Cbb3-type cytochr 26.6 45 0.00098 23.7 1.6 19 94-112 15-33 (60)
69 PRK12785 fliL flagellar basal 26.3 1.4E+02 0.0031 25.1 5.0 16 153-169 86-101 (166)
70 COG1589 FtsQ Cell division sep 25.9 81 0.0018 28.6 3.6 32 95-126 39-70 (269)
71 PRK13150 cytochrome c-type bio 25.2 3.1E+02 0.0067 23.3 6.7 11 198-208 135-145 (159)
72 COG3763 Uncharacterized protei 24.3 83 0.0018 23.1 2.7 19 86-104 4-22 (71)
73 KOG3202 SNARE protein TLG1/Syn 24.1 57 0.0012 29.4 2.2 7 83-89 213-219 (235)
74 KOG0810 SNARE protein Syntaxin 23.6 32 0.0007 32.1 0.5 9 81-89 270-278 (297)
75 PF11770 GAPT: GRB2-binding ad 23.6 84 0.0018 26.5 2.9 22 90-111 15-36 (158)
76 PF15482 CCER1: Coiled-coil do 23.3 24 0.00051 30.5 -0.4 9 79-87 113-121 (214)
77 PRK13254 cytochrome c-type bio 22.9 3E+02 0.0066 22.9 6.2 12 198-209 128-139 (148)
78 KOG3927 Na+/K+ ATPase, beta su 22.6 1.1E+02 0.0023 28.8 3.7 29 91-120 52-83 (300)
79 PF12505 DUF3712: Protein of u 22.5 2.1E+02 0.0044 22.6 5.0 24 134-158 98-121 (125)
80 PF06667 PspB: Phage shock pro 22.5 44 0.00095 24.8 1.0 16 95-110 10-25 (75)
81 PF05399 EVI2A: Ectropic viral 22.3 5.7E+02 0.012 22.9 8.7 24 169-192 178-205 (227)
82 PRK05886 yajC preprotein trans 22.0 42 0.00092 26.7 0.9 12 101-112 14-25 (109)
83 COG3736 VirB8 Type IV secretor 21.9 1.2E+02 0.0025 27.6 3.7 35 86-120 44-78 (239)
84 PF04415 DUF515: Protein of un 21.8 93 0.002 30.5 3.3 12 100-111 47-58 (416)
85 PHA03049 IMV membrane protein; 21.8 57 0.0012 23.7 1.4 20 91-110 5-24 (68)
86 PF06679 DUF1180: Protein of u 21.3 68 0.0015 27.3 2.0 12 83-94 6-17 (163)
87 PF15145 DUF4577: Domain of un 21.2 93 0.002 25.0 2.6 25 87-111 64-88 (128)
88 PF15012 DUF4519: Domain of un 21.1 94 0.002 21.8 2.3 18 95-112 39-56 (56)
89 PRK14740 kdbF potassium-transp 21.1 60 0.0013 19.6 1.2 21 92-112 7-27 (29)
90 PF05961 Chordopox_A13L: Chord 21.0 59 0.0013 23.7 1.3 20 91-110 5-24 (68)
91 PTZ00201 amastin surface glyco 20.9 88 0.0019 27.4 2.7 9 80-88 101-109 (192)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=262.93 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=143.9
Q ss_pred HHHHHHhhheeeeeccCCcEEEEEeeEEEEEeeCC----CCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEe
Q 045712 96 IAFSIAGYVIYATFKIDIPKYRIEEFKVEAFNVLP----DLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTIC 171 (268)
Q Consensus 96 ~l~g~~~~ilylv~rPk~P~fsV~~~~v~~fnvs~----~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg 171 (268)
++++++++++|++||||.|+|+|++++|++|+++. +..+|++++++|+++|||. ++|+|++. ++.++|+|+.+|
T Consensus 49 ~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~-~~~v~Y~g~~vG 126 (219)
T PLN03160 49 ILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNT-TTTIYYGGTVVG 126 (219)
T ss_pred HHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCe-EEEEEECCEEEE
Confidence 34667777889999999999999999999999865 3467888999999999998 89999985 999999999999
Q ss_pred eccCCceeecCCCeEEEEEEEEeec-cCChhHHHHHHhhhcCCeEEEEEEEEEEEEEEEceEeeeeEEEEEEEEEEEecC
Q 045712 172 SGKVSEFYQGYKSIKRINIPLQGKT-EFSSGFQESLAEDKKQGKIPLLIVVKAPIIVELGRIPLKEVVINVNISMIVDSL 250 (268)
Q Consensus 172 ~~~lP~F~Q~~rntt~v~v~l~g~~-~l~~~~~~~L~~d~~~G~V~l~v~v~~~vr~kvG~~~~~~~~v~V~C~l~v~~l 250 (268)
++.+|+|+|++++++.+.+++.... .+.++ ..|.+|..+|.++|++++++++++++|+++++++.++++|++.++.-
T Consensus 127 ~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~ 204 (219)
T PLN03160 127 EARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNIT 204 (219)
T ss_pred EEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECC
Confidence 9999999999999999999987664 33222 46889999999999999999999999999999999999999999874
Q ss_pred CCCccceeeCCceeeec
Q 045712 251 EKDKKIGIISSSYKYGL 267 (268)
Q Consensus 251 ~~~~~~~i~s~~C~~~~ 267 (268)
+. +++++.|++++
T Consensus 205 ~~----~i~~~~C~~~~ 217 (219)
T PLN03160 205 SQ----AIQGQKCKRHV 217 (219)
T ss_pred CC----EEeccEecccc
Confidence 33 68999999875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.43 E-value=1.2e-12 Score=100.35 Aligned_cols=98 Identities=15% Similarity=0.291 Sum_probs=73.1
Q ss_pred EEEEeCCCCeeeEEEcCCcEEEEEeCCEEEe-eccCCceeecCCCeEEEEEEEEeeccCChhHHHHHHhhhcCCeEEEEE
Q 045712 141 IVRAENPSDLISLQYEKGSSVTMNYIDKTIC-SGKVSEFYQGYKSIKRINIPLQGKTEFSSGFQESLAEDKKQGKIPLLI 219 (268)
Q Consensus 141 tv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg-~~~lP~F~Q~~rntt~v~v~l~g~~~l~~~~~~~L~~d~~~G~V~l~v 219 (268)
+|+++|||. ++++|+++ +++++|+|..+| .+..++|+|++++++.+.+.+..+. .++.+.+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~-~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~---~~l~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSI-EYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDY---SDLPRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEE-EEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEH---HHHHHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCE-EEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcH---HHHHHHHHhhh-ccccceEE
Confidence 689999998 99999997 999999999999 7789999999999999999888775 12245666666 66677788
Q ss_pred EEEEEEEEEE-ceEeeeeEEEEEEEE
Q 045712 220 VVKAPIIVEL-GRIPLKEVVINVNIS 244 (268)
Q Consensus 220 ~v~~~vr~kv-G~~~~~~~~v~V~C~ 244 (268)
.+++++++++ +.....+..+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 8888888884 433223444555543
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.39 E-value=7.5e-06 Score=63.65 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=64.8
Q ss_pred CceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeeccCC-ceeecCCCeEEEEEEEEeeccCChhHHHHHHhhh
Q 045712 132 LSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGKVS-EFYQGYKSIKRINIPLQGKTEFSSGFQESLAEDK 210 (268)
Q Consensus 132 ~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~lP-~F~Q~~rntt~v~v~l~g~~~l~~~~~~~L~~d~ 210 (268)
..++.++.+++++.|||. +.+.|++. +..++|+|..+|+|..+ .+..++++++.+.+.+...... ...+..++
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~-~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~~----~~~~~~~l 84 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGL-SYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLFL----AEALIWHI 84 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccE-EEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehhH----hHHHHHhh
Confidence 457799999999999997 79999996 99999999999999986 7999999999999988874222 23344444
Q ss_pred cCCe-EEEEEEE
Q 045712 211 KQGK-IPLLIVV 221 (268)
Q Consensus 211 ~~G~-V~l~v~v 221 (268)
.+|. ++++++.
T Consensus 85 ~~~~~~~y~l~g 96 (100)
T smart00769 85 ANGEEIPYRLDG 96 (100)
T ss_pred ccCCCccEEEEE
Confidence 4333 4444443
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.45 E-value=0.0042 Score=55.72 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhheeeeeccCCcEEEEEeeEEEEEeeCC-CCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEE
Q 045712 91 LFFLIIAFSIAGYVIYATFKIDIPKYRIEEFKVEAFNVLP-DLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKT 169 (268)
Q Consensus 91 l~~li~l~g~~~~ilylv~rPk~P~fsV~~~~v~~fnvs~-~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~ 169 (268)
+++-+++.|++++.++ |+.-.++-.++......++. +.++..++.-++.+.|+|. ..+.-.+. ++++.|..+.
T Consensus 82 V~~CLl~~~L~iFFLf----PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~-s~qv~~~~~V 155 (238)
T PF07092_consen 82 VLLCLLLSGLVIFFLF----PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNL-SIQVLYMKTV 155 (238)
T ss_pred HHHHHHHHHheEEEEe----CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeE-EEEEEEEEeE
Confidence 3333444444443333 76655554444433333333 4568888999999999995 79999997 9999999999
Q ss_pred EeeccCCce-eecCCCeEEEEEEEEee
Q 045712 170 ICSGKVSEF-YQGYKSIKRINIPLQGK 195 (268)
Q Consensus 170 Lg~~~lP~F-~Q~~rntt~v~v~l~g~ 195 (268)
+|.+..... ..++++...+..++...
T Consensus 156 VG~~~~~~~~~I~Prs~~q~~~tV~t~ 182 (238)
T PF07092_consen 156 VGKGKNSNITVIGPRSSKQVNYTVKTT 182 (238)
T ss_pred EeeeEecceEEecccCCceEEEEeeEE
Confidence 999987644 66777776666655544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.40 E-value=0.0009 Score=63.61 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHhhheeeeeccCCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEE
Q 045712 76 SGNCCLKCICFCYCCLFFLIIAFSIAGYVIYATFKIDIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQY 155 (268)
Q Consensus 76 ~~~cc~rc~~~~~~~l~~li~l~g~~~~ilylv~rPk~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y 155 (268)
+++||.|..+|+++.+++|++ +|.++++++..-+| --.|+-..|++.-.+ .--.-|+++|.|.|||. +.|..
T Consensus 295 ~r~~~~r~~~c~~~~i~~lL~-ig~~~gFv~AttKp---L~~v~v~~I~NVlaS---~qELmfdl~V~A~NPn~-~~V~I 366 (387)
T PF12751_consen 295 QRSWFSRFASCIYLSILLLLV-IGFAIGFVFATTKP---LTDVQVVSIQNVLAS---EQELMFDLTVEAFNPNW-FTVTI 366 (387)
T ss_pred cccHHhhhhHHHHHHHHHHHH-HHHHHHhhhhcCcc---cccceEEEeeeeeec---cceEEEeeEEEEECCCe-EEEEe
Confidence 466777766655544444444 44444444444454 223333333332222 23456999999999996 78999
Q ss_pred cCCcEEEEEeCCEEEe
Q 045712 156 EKGSSVTMNYIDKTIC 171 (268)
Q Consensus 156 ~~~s~v~v~Y~g~~Lg 171 (268)
++. +++|+-+..-++
T Consensus 367 ~d~-dldIFAKS~yvg 381 (387)
T PF12751_consen 367 DDM-DLDIFAKSRYVG 381 (387)
T ss_pred ccc-eeeeEecCCccC
Confidence 997 999986654444
No 6
>PLN03160 uncharacterized protein; Provisional
Probab=97.34 E-value=0.0011 Score=58.83 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhheeeeecc--CCcEEEEEeeEEEE-------EeeCC--C-CceeEEEEEEEEEeCC
Q 045712 80 CLKCICFCYCCLFFLIIAFSIAGYVIYATFKI--DIPKYRIEEFKVEA-------FNVLP--D-LSLNTEINVIVRAENP 147 (268)
Q Consensus 80 c~rc~~~~~~~l~~li~l~g~~~~ilylv~rP--k~P~fsV~~~~v~~-------fnvs~--~-~~L~~~~~vtv~a~NP 147 (268)
||+|++|++.++++|+++++++++++|-.-+| +.-.++++++.+.. +|++- + ..=|.|. +.+..+|
T Consensus 36 ~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~- 113 (219)
T PLN03160 36 CIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSN- 113 (219)
T ss_pred ceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcC-
Confidence 34455566667777788888888888888999 46777888877642 33221 1 1125555 5566654
Q ss_pred CCeeeEEEcCCcEEEEEeCCEEEeeccCCceeecCCCeEEE
Q 045712 148 SDLISLQYEKGSSVTMNYIDKTICSGKVSEFYQGYKSIKRI 188 (268)
Q Consensus 148 N~ki~i~Y~~~s~v~v~Y~g~~Lg~~~lP~F~Q~~rntt~v 188 (268)
..+.++|++. .+ +...+..|..+++.+..-+.+..
T Consensus 114 -~~~~v~Y~g~-~v----G~a~~p~g~~~ar~T~~l~~tv~ 148 (219)
T PLN03160 114 -TTTTIYYGGT-VV----GEARTPPGKAKARRTMRMNVTVD 148 (219)
T ss_pred -eEEEEEECCE-EE----EEEEcCCcccCCCCeEEEEEEEE
Confidence 5578999763 33 33457778888888888887753
No 7
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.30 E-value=0.03 Score=47.00 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=77.3
Q ss_pred CCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeecc-CCceeecCCCeEEEEE
Q 045712 112 DIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGK-VSEFYQGYKSIKRINI 190 (268)
Q Consensus 112 k~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~-lP~F~Q~~rntt~v~v 190 (268)
+.|...--.+..-... ....++-.++.++|||. +.|-..+. +..++-+|..+|+|. +-++..++++..++++
T Consensus 31 ~~p~ve~~ka~wGkvt-----~s~~EiV~t~KiyNPN~-fPipVtgl-~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKVT-----NSETEIVGTLKIYNPNP-FPIPVTGL-QYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEEe-----ccceEEEEEEEecCCCC-cceeeece-EEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 3455554444444332 23478999999999997 68999887 999999999999997 5679999999999999
Q ss_pred EEEeec-cCChhHHHHHHhhhcCCeE-EEEEEEEEEEEEEEceEeeeeEEEEE
Q 045712 191 PLQGKT-EFSSGFQESLAEDKKQGKI-PLLIVVKAPIIVELGRIPLKEVVINV 241 (268)
Q Consensus 191 ~l~g~~-~l~~~~~~~L~~d~~~G~V-~l~v~v~~~vr~kvG~~~~~~~~v~V 241 (268)
++.-+. .+. +.+...+.+|.= ++.++++ ..+++|... +.+.++.
T Consensus 104 ~l~~d~~~~k----e~w~~hi~ngErs~Ir~~i~--~~v~vg~~d-~eVpi~~ 149 (161)
T COG5608 104 PLRLDNSKIK----EWWVTHIENGERSTIRVRIK--GVVKVGGMD-YEVPIKD 149 (161)
T ss_pred EEEEehHHHH----HHHHHHhhccCcccEEEEEE--EEEEEccEE-EEEEEEE
Confidence 998775 333 234444555542 3444433 334444433 3444443
No 8
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=89.87 E-value=0.053 Score=36.83 Aligned_cols=9 Identities=44% Similarity=1.486 Sum_probs=3.5
Q ss_pred ccccchhhH
Q 045712 78 NCCLKCICF 86 (268)
Q Consensus 78 ~cc~rc~~~ 86 (268)
+|||||+||
T Consensus 25 gcccccc~c 33 (56)
T TIGR03602 25 GCCCCCCCC 33 (56)
T ss_pred CeEEEeccE
Confidence 344344333
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=81.15 E-value=2.9 Score=37.91 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=17.7
Q ss_pred ceeEEEEEEEEEeCCCCeeeEE
Q 045712 133 SLNTEINVIVRAENPSDLISLQ 154 (268)
Q Consensus 133 ~L~~~~~vtv~a~NPN~ki~i~ 154 (268)
++...=+++|.++|||.++.-.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 5677889999999999887433
No 10
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=72.85 E-value=9.2 Score=30.36 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=30.6
Q ss_pred eEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeecc--CCceeecCCCeEEEEEEEEe
Q 045712 121 FKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGK--VSEFYQGYKSIKRINIPLQG 194 (268)
Q Consensus 121 ~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~--lP~F~Q~~rntt~v~v~l~g 194 (268)
....+|++.++.++..+|+++- . |... .+- . --...|++..+|.-. +|+ +...+..+.+.+..
T Consensus 36 ~~~~gf~vv~d~~v~v~f~Vtr--~-~~~~--a~C--~-VrA~~~d~aeVGrreV~vp~---~~~~~~~~~v~v~T 100 (112)
T PF14155_consen 36 AEVIGFEVVDDSTVEVTFDVTR--D-PGRP--AVC--I-VRALDYDGAEVGRREVLVPP---SGERTVRVTVTVRT 100 (112)
T ss_pred EEEEEEEECCCCEEEEEEEEEE--C-CCCC--EEE--E-EEEEeCCCCEEEEEEEEECC---CCCcEEEEEEEEEe
Confidence 3445666655655555555543 2 5542 222 0 122346777788654 455 33334444554443
No 11
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=71.32 E-value=16 Score=29.64 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHHHHhhheee--eeccCCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCe
Q 045712 95 IIAFSIAGYVIYA--TFKIDIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDL 150 (268)
Q Consensus 95 i~l~g~~~~ilyl--v~rPk~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~k 150 (268)
+++++++.+++|. .-++++|.+++......+ .....+-+-++++|--.+
T Consensus 13 ~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r-------~~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 13 LILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER-------MQTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHhhccCCCCCeEEEeehheeE-------EeCCEEEEEEEEEeCCCc
Confidence 3444555555554 457789999987766544 223457778888885543
No 12
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=70.47 E-value=3 Score=43.64 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhheeeeec
Q 045712 88 YCCLFFLIIAFSIAGYVIYATFK 110 (268)
Q Consensus 88 ~~~l~~li~l~g~~~~ilylv~r 110 (268)
+|-+.++++++++++++++...+
T Consensus 154 ~~~l~Llvl~i~~ligv~~~fvt 176 (865)
T KOG4331|consen 154 CCELELLVLAIELLIGVFRAFVT 176 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777765443
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=67.50 E-value=46 Score=28.88 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=21.2
Q ss_pred ccCCcEEEEEeeEEEEEeeCCCCceeEEEEEE
Q 045712 110 KIDIPKYRIEEFKVEAFNVLPDLSLNTEINVI 141 (268)
Q Consensus 110 rPk~P~fsV~~~~v~~fnvs~~~~L~~~~~vt 141 (268)
.++.|.|.+++++...|+.+ ..++..+...
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~--G~l~y~l~a~ 66 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE--GALSYKLVAQ 66 (192)
T ss_pred CCCCCCEEEeccEEEEECCC--CCEEEEEEec
Confidence 45779999999999988764 3444444443
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=67.46 E-value=4.8 Score=32.57 Aligned_cols=7 Identities=14% Similarity=0.481 Sum_probs=2.9
Q ss_pred chhhHHH
Q 045712 82 KCICFCY 88 (268)
Q Consensus 82 rc~~~~~ 88 (268)
||+.|.+
T Consensus 1 RW~l~~i 7 (130)
T PF12273_consen 1 RWVLFAI 7 (130)
T ss_pred CeeeHHH
Confidence 3444433
No 15
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=65.85 E-value=20 Score=30.12 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=8.8
Q ss_pred EEEcCCcEEEEEeCCEE
Q 045712 153 LQYEKGSSVTMNYIDKT 169 (268)
Q Consensus 153 i~Y~~~s~v~v~Y~g~~ 169 (268)
-+|=.. .+++.+.+..
T Consensus 78 ~rylkv-~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYV-GLTLRLPDEA 93 (162)
T ss_pred ceEEEE-EEEEEECCHH
Confidence 455554 5666665543
No 16
>PRK05529 cell division protein FtsQ; Provisional
Probab=65.35 E-value=13 Score=33.61 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=12.6
Q ss_pred CcEEEEEeeEEEEEe
Q 045712 113 IPKYRIEEFKVEAFN 127 (268)
Q Consensus 113 ~P~fsV~~~~v~~fn 127 (268)
.|.|.|..+.|++-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 489999999998754
No 17
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=65.15 E-value=39 Score=27.48 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=39.3
Q ss_pred EEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEE-eCCEEEeeccC
Q 045712 116 YRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMN-YIDKTICSGKV 175 (268)
Q Consensus 116 fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~-Y~g~~Lg~~~l 175 (268)
-.++.+++.+..+.....-.-.+.++.++.|...+ ...|-.+ +++++ -+|+.+++-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~-~~~~P~l-~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRADF-PQALPAL-ELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCC-cccCceE-EEEEECCCCCEEEEEEE
Confidence 45666666555554333456778889999997764 7888776 77776 56777776554
No 18
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=61.57 E-value=5 Score=42.31 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=11.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHh
Q 045712 81 LKCICFCYCCLFFLIIAFSIAG 102 (268)
Q Consensus 81 ~rc~~~~~~~l~~li~l~g~~~ 102 (268)
.|+++.++++++++++++|++.
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444555555544
No 19
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=61.53 E-value=70 Score=26.09 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=36.8
Q ss_pred Hhhheeeeecc--CCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeec
Q 045712 101 AGYVIYATFKI--DIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSG 173 (268)
Q Consensus 101 ~~~ilylv~rP--k~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~ 173 (268)
+.+++|.++.. +.+..++...+- ++. +-.+.+..+++|-.+ ..+..=.+ ++++..++...++.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~-~~i~~c~i-~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY------SESFYVDGTVTNTGK-FTIKKCKI-TVKLYNDKQVSGNK 97 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee------ccEEEEEEEEEECCC-CEeeEEEE-EEEEEeCCCccCch
Confidence 33444545444 566666655442 332 356788889999654 45666555 67777755444443
No 20
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=56.97 E-value=14 Score=24.90 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhheeeeecc
Q 045712 88 YCCLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 88 ~~~l~~li~l~g~~~~ilylv~rP 111 (268)
++++++..++++++.+.+|..|-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 344566677889999999999987
No 21
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=55.20 E-value=16 Score=31.67 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeccCCc
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYATFKIDIP 114 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilylv~rPk~P 114 (268)
|-.+|++++.+++++++++++.+++|..+
T Consensus 3 WK~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 44445566777778888888889999866
No 22
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=52.98 E-value=8.5 Score=22.57 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhheeeeeccC
Q 045712 92 FFLIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 92 ~~li~l~g~~~~ilylv~rPk 112 (268)
+.+++.+++++.++|..++|.
T Consensus 3 l~~~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 3 LGGIVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 345556677777778788885
No 23
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=52.87 E-value=23 Score=29.46 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhe
Q 045712 83 CICFCYCCLFFLIIAFSIAGYVI 105 (268)
Q Consensus 83 c~~~~~~~l~~li~l~g~~~~il 105 (268)
|.-+.++++=+|++++|++..++
T Consensus 37 s~Sg~~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 37 SPSGLFLLLGILVLLVGIAMAVL 59 (141)
T ss_pred cHHHHHHHHHHHHHHHhhHhhee
Confidence 43333333334566666665544
No 24
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=52.86 E-value=12 Score=24.80 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhheeeeecc
Q 045712 89 CCLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 89 ~~l~~li~l~g~~~~ilylv~rP 111 (268)
+.+++..++++++.+.+|..|-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 34556677888999999999976
No 25
>CHL00020 psbN photosystem II protein N
Probab=52.67 E-value=15 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhheeeeecc
Q 045712 88 YCCLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 88 ~~~l~~li~l~g~~~~ilylv~rP 111 (268)
+.++++..++++++.+.+|..|-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 344566677889999999999987
No 26
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=50.31 E-value=53 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.329 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeee
Q 045712 84 ICFCYCCLFFLIIAFSIAGYVIYATF 109 (268)
Q Consensus 84 ~~~~~~~l~~li~l~g~~~~ilylv~ 109 (268)
..|++++++++++++|+.++.+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 34666666666777777777777775
No 27
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.17 E-value=8.5 Score=32.36 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhhheeeeecc
Q 045712 82 KCICFCYCCLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 82 rc~~~~~~~l~~li~l~g~~~~ilylv~rP 111 (268)
+++.|+..++++++++++.+++.+|.+..|
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P 33 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKP 33 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCc
Confidence 466677777777777888888888988887
No 28
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=45.18 E-value=12 Score=30.06 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=8.0
Q ss_pred HHhhheeeeeccC
Q 045712 100 IAGYVIYATFKID 112 (268)
Q Consensus 100 ~~~~ilylv~rPk 112 (268)
++++++|+.+||+
T Consensus 11 v~~~i~yf~iRPQ 23 (113)
T PRK06531 11 VMLGLIFFMQRQQ 23 (113)
T ss_pred HHHHHHHheechH
Confidence 3444456679994
No 29
>PHA02650 hypothetical protein; Provisional
Probab=45.00 E-value=20 Score=26.91 Aligned_cols=22 Identities=0% Similarity=-0.226 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhheee
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilyl 107 (268)
|..+++++++++++++..++||
T Consensus 49 ~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 49 GQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4443444444444445555565
No 30
>PHA02819 hypothetical protein; Provisional
Probab=44.36 E-value=21 Score=26.14 Aligned_cols=22 Identities=23% Similarity=0.310 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhhheee
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilyl 107 (268)
|...++++++++++++...+||
T Consensus 46 ~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 46 RYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444454
No 31
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=44.33 E-value=61 Score=24.75 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=37.0
Q ss_pred CCceeEEEEEEEEEeCCCCee--eEEEcCCcEEEEEeCCEEEe--eccCCceeecCCCeEEEEEEEE
Q 045712 131 DLSLNTEINVIVRAENPSDLI--SLQYEKGSSVTMNYIDKTIC--SGKVSEFYQGYKSIKRINIPLQ 193 (268)
Q Consensus 131 ~~~L~~~~~vtv~a~NPN~ki--~i~Y~~~s~v~v~Y~g~~Lg--~~~lP~F~Q~~rntt~v~v~l~ 193 (268)
+..+.-++++.+++.||...- .+...= +...+.|.|.... .-.......+++++..+.+.+.
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l-~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNL-CAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEE-EEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEE-EEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 456778999999999986421 111111 2566789887653 2334556667777777666664
No 32
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=44.11 E-value=16 Score=23.57 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhheeeee
Q 045712 92 FFLIIAFSIAGYVIYATF 109 (268)
Q Consensus 92 ~~li~l~g~~~~ilylv~ 109 (268)
.++++++-+...|+|.++
T Consensus 15 ~~llflv~imliif~f~l 32 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334344444555544
No 33
>PHA03054 IMV membrane protein; Provisional
Probab=43.91 E-value=22 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhheee
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilyl 107 (268)
|...++++++++++++...+||
T Consensus 48 ~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 48 WYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444443
No 34
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=43.83 E-value=16 Score=33.05 Aligned_cols=14 Identities=21% Similarity=0.833 Sum_probs=6.8
Q ss_pred chhhHHHHHHHHHH
Q 045712 82 KCICFCYCCLFFLI 95 (268)
Q Consensus 82 rc~~~~~~~l~~li 95 (268)
+|+||.+|++++++
T Consensus 250 ki~c~gI~~iii~v 263 (280)
T COG5074 250 KIRCYGICFIIIIV 263 (280)
T ss_pred ceehhhhHHHHHHH
Confidence 35556555544433
No 35
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=41.79 E-value=26 Score=25.30 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHhhheeeeeccC
Q 045712 95 IIAFSIAGYVIYATFKID 112 (268)
Q Consensus 95 i~l~g~~~~ilylv~rPk 112 (268)
+++.+++..+.|++.+|+
T Consensus 11 ~avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 11 VAVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHHhhhceeEEEEECCC
Confidence 335556667789899997
No 36
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=41.63 E-value=8.8 Score=22.73 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhheeeeeccC
Q 045712 93 FLIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 93 ~li~l~g~~~~ilylv~rPk 112 (268)
.+++.+++++.++|..++|.
T Consensus 3 ~~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 3 LLVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHHhCHH
Confidence 34556667777777778885
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=41.54 E-value=14 Score=24.63 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhheeeeeccCC
Q 045712 92 FFLIIAFSIAGYVIYATFKIDI 113 (268)
Q Consensus 92 ~~li~l~g~~~~ilylv~rPk~ 113 (268)
+.++++.+++++++|.+++|+.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 3445555666666677788863
No 38
>PHA02844 putative transmembrane protein; Provisional
Probab=40.87 E-value=26 Score=25.95 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhheee
Q 045712 90 CLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 90 ~l~~li~l~g~~~~ilyl 107 (268)
++++++++++++...+||
T Consensus 52 ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 52 ILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444555565
No 39
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=40.05 E-value=19 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhheeeeeccC
Q 045712 92 FFLIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 92 ~~li~l~g~~~~ilylv~rPk 112 (268)
+..++.+|+++.++|..+||.
T Consensus 7 l~~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 7 LAGAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 344556667777777788885
No 40
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=38.27 E-value=20 Score=37.61 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeeeeccCCcEEE
Q 045712 83 CICFCYCCLFFLIIAFSIAGYVIYATFKIDIPKYR 117 (268)
Q Consensus 83 c~~~~~~~l~~li~l~g~~~~ilylv~rPk~P~fs 117 (268)
.+++++.++++++++.+.+++++|+.+.|+.|.+.
T Consensus 4 ~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 4 LIKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 44566666666666666677777888899999875
No 41
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=37.88 E-value=2e+02 Score=22.68 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=39.4
Q ss_pred EEeeccCCceeecCCCeEEEEEEEEeecc-CChhHHHHHHhh-hcCCeEEEEEEEEEEEEEEEceEeeeeEEEEEE
Q 045712 169 TICSGKVSEFYQGYKSIKRINIPLQGKTE-FSSGFQESLAED-KKQGKIPLLIVVKAPIIVELGRIPLKEVVINVN 242 (268)
Q Consensus 169 ~Lg~~~lP~F~Q~~rntt~v~v~l~g~~~-l~~~~~~~L~~d-~~~G~V~l~v~v~~~vr~kvG~~~~~~~~v~V~ 242 (268)
.+|.-.+|+... +.+.+. .+ ..+.-. .+.+...++..+ .....+.+.++.+ ...++|.++...+.+...
T Consensus 2 ~f~~~~lP~~~~-~~~~~~-~~-~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~k~ 72 (125)
T PF12505_consen 2 PFATLDLPQIKI-KGNGTI-SI-IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFDKT 72 (125)
T ss_pred ceEEEECCCEEe-cCCceE-EE-eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeecce
Confidence 467778898888 333221 11 222222 234455566666 3566677777766 478889986655555443
No 42
>PHA02692 hypothetical protein; Provisional
Probab=37.84 E-value=37 Score=24.88 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.4
Q ss_pred HHHHHhhheee
Q 045712 97 AFSIAGYVIYA 107 (268)
Q Consensus 97 l~g~~~~ilyl 107 (268)
+++++...+||
T Consensus 57 ~~~vll~flYL 67 (70)
T PHA02692 57 AIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 43
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=36.23 E-value=26 Score=31.25 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhheeeeeccCCcEE
Q 045712 93 FLIIAFSIAGYVIYATFKIDIPKY 116 (268)
Q Consensus 93 ~li~l~g~~~~ilylv~rPk~P~f 116 (268)
++|+++|+.++.+|-++|||....
T Consensus 167 llv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHhhcceEEEEEEeccccccc
Confidence 333344443444444778876543
No 44
>PHA02975 hypothetical protein; Provisional
Probab=35.48 E-value=35 Score=24.91 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhhheee
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilyl 107 (268)
|..++++++.++++++...+||
T Consensus 44 ~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 44 SIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333333333344444443
No 45
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=34.89 E-value=52 Score=21.29 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=12.4
Q ss_pred HHHHHHHHhhheeeeeccC
Q 045712 94 LIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 94 li~l~g~~~~ilylv~rPk 112 (268)
+++++-++..++|+++..+
T Consensus 28 ~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 28 VILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHHhheEEEeCC
Confidence 4445566777778887653
No 46
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.79 E-value=39 Score=29.40 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=17.9
Q ss_pred HhhheeeeeccCCcEEEEEeeE---EEEEeeCC
Q 045712 101 AGYVIYATFKIDIPKYRIEEFK---VEAFNVLP 130 (268)
Q Consensus 101 ~~~ilylv~rPk~P~fsV~~~~---v~~fnvs~ 130 (268)
++++..+++.|+.|...+.+.+ ...|.+++
T Consensus 26 ~~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 26 AVLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 3666667888988666555543 33455543
No 47
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.72 E-value=1e+02 Score=24.70 Aligned_cols=17 Identities=12% Similarity=-0.017 Sum_probs=11.7
Q ss_pred eeEEEEEEEEEeCCCCe
Q 045712 134 LNTEINVIVRAENPSDL 150 (268)
Q Consensus 134 L~~~~~vtv~a~NPN~k 150 (268)
.+...+.++.+.|-|.+
T Consensus 50 ~~~~y~y~i~ayn~~Gk 66 (113)
T COG5294 50 GSPGYEYTITAYNKNGK 66 (113)
T ss_pred CCccceeeehhhccCCc
Confidence 33456788888887754
No 48
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=34.71 E-value=3.5e+02 Score=25.20 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=22.3
Q ss_pred cEEEEEeeEEEEEeeCC------C-CceeEEEEEEEEEeCCC
Q 045712 114 PKYRIEEFKVEAFNVLP------D-LSLNTEINVIVRAENPS 148 (268)
Q Consensus 114 P~fsV~~~~v~~fnvs~------~-~~L~~~~~vtv~a~NPN 148 (268)
=+|+..++++..||+.+ | .+++.+-.+-.+++||-
T Consensus 90 Dt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi 131 (288)
T KOG2621|consen 90 DTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPI 131 (288)
T ss_pred ceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHH
Confidence 36788888999998864 1 24444444555556654
No 49
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.69 E-value=64 Score=26.51 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=5.0
Q ss_pred EEEEEeCCE
Q 045712 160 SVTMNYIDK 168 (268)
Q Consensus 160 ~v~v~Y~g~ 168 (268)
++.+.+++.
T Consensus 68 ~i~l~~~~~ 76 (142)
T PRK07718 68 QFKIETDSK 76 (142)
T ss_pred EEEEEECCH
Confidence 555655544
No 50
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=33.95 E-value=29 Score=29.41 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHhhheeeeecc
Q 045712 96 IAFSIAGYVIYATFKI 111 (268)
Q Consensus 96 ~l~g~~~~ilylv~rP 111 (268)
+++|+++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3444444888989998
No 51
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=33.47 E-value=24 Score=24.74 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=6.7
Q ss_pred eeccCCcEE
Q 045712 108 TFKIDIPKY 116 (268)
Q Consensus 108 v~rPk~P~f 116 (268)
.|-|+-|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 567888877
No 52
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=32.75 E-value=33 Score=37.92 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=15.3
Q ss_pred CCeEEEEEEEEEEEEEEE---ceEeeeeEEEEEEEE
Q 045712 212 QGKIPLLIVVKAPIIVEL---GRIPLKEVVINVNIS 244 (268)
Q Consensus 212 ~G~V~l~v~v~~~vr~kv---G~~~~~~~~v~V~C~ 244 (268)
.|.+-+-.+.-..-.+++ |.+.++...+.+.|.
T Consensus 319 n~i~rii~r~pi~~ey~vafp~lynsrprsvav~~y 354 (2365)
T COG5178 319 NGIVRIIRRPPIDDEYPVAFPGLYNSRPRSVAVECY 354 (2365)
T ss_pred cceeeEEEeCCcCCccccccchhhcCcccceeeecc
Confidence 454444443333333332 444555566666663
No 53
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=32.59 E-value=1.7e+02 Score=25.07 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=5.4
Q ss_pred eccCCcEEEEE
Q 045712 109 FKIDIPKYRIE 119 (268)
Q Consensus 109 ~rPk~P~fsV~ 119 (268)
+.+..|..+|.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 44545555543
No 54
>PRK01844 hypothetical protein; Provisional
Probab=32.25 E-value=44 Score=24.63 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhhe
Q 045712 90 CLFFLIIAFSIAGYVI 105 (268)
Q Consensus 90 ~l~~li~l~g~~~~il 105 (268)
++.++.+++|++++++
T Consensus 8 ~l~I~~li~G~~~Gff 23 (72)
T PRK01844 8 LVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666666554
No 55
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.12 E-value=47 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhee
Q 045712 90 CLFFLIIAFSIAGYVIY 106 (268)
Q Consensus 90 ~l~~li~l~g~~~~ily 106 (268)
.+++++++++++++++.
T Consensus 143 ~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 143 GILLLLLTLIILFGVIC 159 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555543
No 56
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=30.73 E-value=32 Score=21.60 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=7.4
Q ss_pred HHHHHHHHhhheee
Q 045712 94 LIIAFSIAGYVIYA 107 (268)
Q Consensus 94 li~l~g~~~~ilyl 107 (268)
++.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34455555555554
No 57
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.61 E-value=28 Score=32.57 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhheeeeec
Q 045712 91 LFFLIIAFSIAGYVIYATFK 110 (268)
Q Consensus 91 l~~li~l~g~~~~ilylv~r 110 (268)
.+++|+++.++++|+||++|
T Consensus 261 SiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777888875
No 58
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=29.26 E-value=55 Score=29.29 Aligned_cols=12 Identities=0% Similarity=0.102 Sum_probs=8.1
Q ss_pred HHhhheeeeecc
Q 045712 100 IAGYVIYATFKI 111 (268)
Q Consensus 100 ~~~~ilylv~rP 111 (268)
+++++.|+.|||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 445566888887
No 59
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=28.91 E-value=4.1e+02 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.3
Q ss_pred CCceeEEEEEEEEEeCCCCeeeEEEcC-CcEEEEEeCCEEEe
Q 045712 131 DLSLNTEINVIVRAENPSDLISLQYEK-GSSVTMNYIDKTIC 171 (268)
Q Consensus 131 ~~~L~~~~~vtv~a~NPN~ki~i~Y~~-~s~v~v~Y~g~~Lg 171 (268)
+..+...-+.+|.++=||+ +.+.+.. ..+..++|+|..+.
T Consensus 34 gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 4678888899999999995 7888733 23577889987654
No 60
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=28.62 E-value=42 Score=30.78 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=16.9
Q ss_pred ceeEEEEEEEEEeCCCCe--eeEEEcCC
Q 045712 133 SLNTEINVIVRAENPSDL--ISLQYEKG 158 (268)
Q Consensus 133 ~L~~~~~vtv~a~NPN~k--i~i~Y~~~ 158 (268)
.+..+=++++.++|.|.. -.+..++.
T Consensus 83 ~i~s~~~v~~~~r~~~g~~~~~l~v~~~ 110 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGSVTSRLVVGPD 110 (264)
T ss_pred EEEecCceEEEEecCCCcccceEEECCC
Confidence 455666788888998876 24444443
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.56 E-value=36 Score=27.65 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=10.8
Q ss_pred HHHHHHHHhhheeeeecc-CCcEEEEEe
Q 045712 94 LIIAFSIAGYVIYATFKI-DIPKYRIEE 120 (268)
Q Consensus 94 li~l~g~~~~ilylv~rP-k~P~fsV~~ 120 (268)
++.++|++++|+|++-|= |.+...++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 344556666777777643 444444443
No 62
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=28.35 E-value=39 Score=32.77 Aligned_cols=6 Identities=17% Similarity=0.971 Sum_probs=2.9
Q ss_pred hhhHHH
Q 045712 83 CICFCY 88 (268)
Q Consensus 83 c~~~~~ 88 (268)
|.-|++
T Consensus 61 c~~~~~ 66 (406)
T PF04906_consen 61 CLTWSL 66 (406)
T ss_pred chHHHH
Confidence 454553
No 63
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.15 E-value=47 Score=22.38 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=11.9
Q ss_pred HHHHHHHHhhheeeeeccCC
Q 045712 94 LIIAFSIAGYVIYATFKIDI 113 (268)
Q Consensus 94 li~l~g~~~~ilylv~rPk~ 113 (268)
+++++++++++++.+|+|+.
T Consensus 16 l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 34445556666666777853
No 64
>PRK00523 hypothetical protein; Provisional
Probab=27.86 E-value=58 Score=24.01 Aligned_cols=15 Identities=7% Similarity=-0.243 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhe
Q 045712 91 LFFLIIAFSIAGYVI 105 (268)
Q Consensus 91 l~~li~l~g~~~~il 105 (268)
+.++++++|++++++
T Consensus 10 l~i~~li~G~~~Gff 24 (72)
T PRK00523 10 LGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445566655554
No 65
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=26.89 E-value=34 Score=31.74 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=14.7
Q ss_pred HHHHHHHHhhheeeeeccCCcEEEE
Q 045712 94 LIIAFSIAGYVIYATFKIDIPKYRI 118 (268)
Q Consensus 94 li~l~g~~~~ilylv~rPk~P~fsV 118 (268)
|+.++++.+.++|..+.++.|++.-
T Consensus 51 La~lfa~~m~v~l~tld~~~Pk~~~ 75 (289)
T PF00287_consen 51 LAALFAICMWVFLQTLDPDVPKYQD 75 (289)
T ss_dssp HHHHHHHHHHHHHHTSSSSS-S-ST
T ss_pred HHHHHHHHHHHHHHHCCCCCCceec
Confidence 3444444555666678899999874
No 66
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=26.86 E-value=3e+02 Score=21.34 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=21.5
Q ss_pred CCcEEEEEeeEEEEE-eeCC---C-----CceeEEEEEEEEEeCCCCeeeEE
Q 045712 112 DIPKYRIEEFKVEAF-NVLP---D-----LSLNTEINVIVRAENPSDLISLQ 154 (268)
Q Consensus 112 k~P~fsV~~~~v~~f-nvs~---~-----~~L~~~~~vtv~a~NPN~ki~i~ 154 (268)
+.|..++..--++.= +... + ..-+..+-+++..+|-- ++.+.
T Consensus 31 ~aP~~sv~a~Vv~Kr~~~~~~~~~~~~~~~~~~~~YyvtFe~e~G~-r~ef~ 81 (110)
T PF10694_consen 31 NAPVRSVPATVVDKRTEVSTHRRSRQREVGSESTEYYVTFEFESGD-RREFR 81 (110)
T ss_dssp ---EEEEEEEEEEEEEEEEEESGG--SS-SS-EEEEEEEEEESSSS-SEEEE
T ss_pred CCCcEEEEEEEEEeEeEEeCCCCCCCCccCCCceEEEEEEEECCCC-EEEEE
Confidence 568888776554442 2211 0 12466788888888844 44444
No 67
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.76 E-value=73 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhhhe
Q 045712 86 FCYCCLFFLIIAFSIAGYVI 105 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~il 105 (268)
|++.+.++|++++|++++.+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I 23 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYI 23 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhh
Confidence 44555566666777766654
No 68
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=45 Score=23.70 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=11.7
Q ss_pred HHHHHHHHhhheeeeeccC
Q 045712 94 LIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 94 li~l~g~~~~ilylv~rPk 112 (268)
++++...+++++|.+|+|+
T Consensus 15 t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3344445556667788885
No 69
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.27 E-value=1.4e+02 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=9.2
Q ss_pred EEEcCCcEEEEEeCCEE
Q 045712 153 LQYEKGSSVTMNYIDKT 169 (268)
Q Consensus 153 i~Y~~~s~v~v~Y~g~~ 169 (268)
.+|=.. .+++-+.+..
T Consensus 86 ~ryLkv-~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKL-KVVLEVKDEK 101 (166)
T ss_pred ceEEEE-EEEEEECCHH
Confidence 356555 6666666543
No 70
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=25.92 E-value=81 Score=28.58 Aligned_cols=32 Identities=13% Similarity=0.341 Sum_probs=24.0
Q ss_pred HHHHHHHhhheeeeeccCCcEEEEEeeEEEEE
Q 045712 95 IIAFSIAGYVIYATFKIDIPKYRIEEFKVEAF 126 (268)
Q Consensus 95 i~l~g~~~~ilylv~rPk~P~fsV~~~~v~~f 126 (268)
++++++.++++|...-++.|.|.+..+.|++=
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn 70 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSGN 70 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEecC
Confidence 34455566667777788889999999998873
No 71
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.25 E-value=3.1e+02 Score=23.31 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=7.4
Q ss_pred CChhHHHHHHh
Q 045712 198 FSSGFQESLAE 208 (268)
Q Consensus 198 l~~~~~~~L~~ 208 (268)
.+.+++++|++
T Consensus 135 mPpEv~~al~~ 145 (159)
T PRK13150 135 TPPEVEKAMQE 145 (159)
T ss_pred CCHHHHHHHHH
Confidence 56777777764
No 72
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=83 Score=23.10 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 045712 86 FCYCCLFFLIIAFSIAGYV 104 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~i 104 (268)
|..++++++.+++|++.+.
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444555566666663
No 73
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.13 E-value=57 Score=29.43 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=3.0
Q ss_pred hhhHHHH
Q 045712 83 CICFCYC 89 (268)
Q Consensus 83 c~~~~~~ 89 (268)
|-|||.+
T Consensus 213 ~~~~~~i 219 (235)
T KOG3202|consen 213 CSQWCAI 219 (235)
T ss_pred ccchhHH
Confidence 4444443
No 74
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.56 E-value=32 Score=32.09 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=3.6
Q ss_pred cchhhHHHH
Q 045712 81 LKCICFCYC 89 (268)
Q Consensus 81 ~rc~~~~~~ 89 (268)
-.|+|++++
T Consensus 270 ~k~i~ii~~ 278 (297)
T KOG0810|consen 270 WKIIIIIIL 278 (297)
T ss_pred ceeeeehHH
Confidence 344444333
No 75
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.55 E-value=84 Score=26.52 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhheeeeecc
Q 045712 90 CLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 90 ~l~~li~l~g~~~~ilylv~rP 111 (268)
.+++|++++...++.+|.+-+.
T Consensus 15 gi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 15 GISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHhcceEEEeecc
Confidence 3444555666667777876653
No 76
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=23.32 E-value=24 Score=30.54 Aligned_cols=9 Identities=44% Similarity=1.552 Sum_probs=5.4
Q ss_pred cccchhhHH
Q 045712 79 CCLKCICFC 87 (268)
Q Consensus 79 cc~rc~~~~ 87 (268)
|-|||.||+
T Consensus 113 c~cccscw~ 121 (214)
T PF15482_consen 113 CLCCCSCWC 121 (214)
T ss_pred hheeccccC
Confidence 444567776
No 77
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.90 E-value=3e+02 Score=22.90 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=6.5
Q ss_pred CChhHHHHHHhh
Q 045712 198 FSSGFQESLAED 209 (268)
Q Consensus 198 l~~~~~~~L~~d 209 (268)
-+.++.++|+++
T Consensus 128 ~p~ev~~~~~~~ 139 (148)
T PRK13254 128 MPKEVADALKKA 139 (148)
T ss_pred CCHHHHHHHHHh
Confidence 345555566543
No 78
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=22.65 E-value=1.1e+02 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhheee---eeccCCcEEEEEe
Q 045712 91 LFFLIIAFSIAGYVIYA---TFKIDIPKYRIEE 120 (268)
Q Consensus 91 l~~li~l~g~~~~ilyl---v~rPk~P~fsV~~ 120 (268)
+++-+++++++++.+|. .+.|+.|++. ++
T Consensus 52 ivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 52 IVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 33334555555555544 4689999999 44
No 79
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=22.46 E-value=2.1e+02 Score=22.64 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=16.6
Q ss_pred eeEEEEEEEEEeCCCCeeeEEEcCC
Q 045712 134 LNTEINVIVRAENPSDLISLQYEKG 158 (268)
Q Consensus 134 L~~~~~vtv~a~NPN~ki~i~Y~~~ 158 (268)
-..++..++.+.||.. +++..+..
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v 121 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNV 121 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccE
Confidence 3567788888888885 66665543
No 80
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.45 E-value=44 Score=24.82 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=7.6
Q ss_pred HHHHHHHhhheeeeec
Q 045712 95 IIAFSIAGYVIYATFK 110 (268)
Q Consensus 95 i~l~g~~~~ilylv~r 110 (268)
++++.++++.+|++++
T Consensus 10 livf~ifVap~WL~lH 25 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555555543
No 81
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.28 E-value=5.7e+02 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=10.4
Q ss_pred EEee-ccCCc---eeecCCCeEEEEEEE
Q 045712 169 TICS-GKVSE---FYQGYKSIKRINIPL 192 (268)
Q Consensus 169 ~Lg~-~~lP~---F~Q~~rntt~v~v~l 192 (268)
.|++ |-+|+ -.|.++..+--.+.|
T Consensus 178 FLASSgLWPa~sdTWkRakqltg~~l~m 205 (227)
T PF05399_consen 178 FLASSGLWPAESDTWKRAKQLTGPNLMM 205 (227)
T ss_pred eeeccccCccccchhhhhhhccCcccee
Confidence 3443 44554 244444444333333
No 82
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.01 E-value=42 Score=26.67 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=6.8
Q ss_pred HhhheeeeeccC
Q 045712 101 AGYVIYATFKID 112 (268)
Q Consensus 101 ~~~ilylv~rPk 112 (268)
+++++|+.+||+
T Consensus 14 ~~i~yF~~iRPQ 25 (109)
T PRK05886 14 MGGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHHccHH
Confidence 334445567884
No 83
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=21.90 E-value=1.2e+02 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeccCCcEEEEEe
Q 045712 86 FCYCCLFFLIIAFSIAGYVIYATFKIDIPKYRIEE 120 (268)
Q Consensus 86 ~~~~~l~~li~l~g~~~~ilylv~rPk~P~fsV~~ 120 (268)
|++++++.++.+++++++++.+-++=+.|.+--.+
T Consensus 44 ~~va~~~~~l~v~~~~~Ia~llPLK~~epy~v~vd 78 (239)
T COG3736 44 WRVAILFTLLAVAAVIAIAILLPLKKTEPYVVRVD 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccEEEEEc
Confidence 55555666666666666666677777778765433
No 84
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=21.81 E-value=93 Score=30.45 Aligned_cols=12 Identities=0% Similarity=-0.039 Sum_probs=5.9
Q ss_pred HHhhheeeeecc
Q 045712 100 IAGYVIYATFKI 111 (268)
Q Consensus 100 ~~~~ilylv~rP 111 (268)
+.....|+.++|
T Consensus 47 ~~~~Y~~~~~~~ 58 (416)
T PF04415_consen 47 VYNIYYFLQNQP 58 (416)
T ss_pred HHHHHHHhhhhH
Confidence 333344555666
No 85
>PHA03049 IMV membrane protein; Provisional
Probab=21.75 E-value=57 Score=23.68 Aligned_cols=20 Identities=25% Similarity=0.747 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhheeeeec
Q 045712 91 LFFLIIAFSIAGYVIYATFK 110 (268)
Q Consensus 91 l~~li~l~g~~~~ilylv~r 110 (268)
++++++-++++++++|-+|+
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455666667777764
No 86
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.31 E-value=68 Score=27.33 Aligned_cols=12 Identities=8% Similarity=0.093 Sum_probs=4.5
Q ss_pred hhhHHHHHHHHH
Q 045712 83 CICFCYCCLFFL 94 (268)
Q Consensus 83 c~~~~~~~l~~l 94 (268)
|.|-+...+++|
T Consensus 6 ~~~~~~~~~llL 17 (163)
T PF06679_consen 6 ALPHLLAPWLLL 17 (163)
T ss_pred cccchhHHHHHH
Confidence 333333333333
No 87
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.24 E-value=93 Score=25.01 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhheeeeecc
Q 045712 87 CYCCLFFLIIAFSIAGYVIYATFKI 111 (268)
Q Consensus 87 ~~~~l~~li~l~g~~~~ilylv~rP 111 (268)
++.++++|++-++++.++++|+++-
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeec
Confidence 3444555666677777787887763
No 88
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=21.11 E-value=94 Score=21.81 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=10.9
Q ss_pred HHHHHHHhhheeeeeccC
Q 045712 95 IIAFSIAGYVIYATFKID 112 (268)
Q Consensus 95 i~l~g~~~~ilylv~rPk 112 (268)
++++.++++++|+.-||+
T Consensus 39 ~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 39 AAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHhheeEEeccCC
Confidence 334444566678777774
No 89
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=21.10 E-value=60 Score=19.64 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhheeeeeccC
Q 045712 92 FFLIIAFSIAGYVIYATFKID 112 (268)
Q Consensus 92 ~~li~l~g~~~~ilylv~rPk 112 (268)
+..++.+++++.++|-.+||.
T Consensus 7 ls~a~a~~Lf~YLv~ALlRae 27 (29)
T PRK14740 7 LSLALATGLFVYLLVALLRAD 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 334555666666777777875
No 90
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=21.04 E-value=59 Score=23.67 Aligned_cols=20 Identities=25% Similarity=0.780 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhheeeeec
Q 045712 91 LFFLIIAFSIAGYVIYATFK 110 (268)
Q Consensus 91 l~~li~l~g~~~~ilylv~r 110 (268)
++++++-++++++|+|-+|.
T Consensus 5 ~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455666667777664
No 91
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=20.95 E-value=88 Score=27.37 Aligned_cols=9 Identities=0% Similarity=-0.211 Sum_probs=4.0
Q ss_pred ccchhhHHH
Q 045712 80 CLKCICFCY 88 (268)
Q Consensus 80 c~rc~~~~~ 88 (268)
||.|+.|.+
T Consensus 101 cc~~lr~vc 109 (192)
T PTZ00201 101 GCTIHRWVC 109 (192)
T ss_pred ccchHHHHH
Confidence 444444443
Done!