Query 045712
Match_columns 268
No_of_seqs 183 out of 794
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 6.7E-06 2.3E-10 69.4 11.6 103 112-225 43-147 (174)
2 1xo8_A AT1G01470; structural g 98.1 3.3E-06 1.1E-10 69.6 6.3 104 112-225 20-124 (151)
3 3but_A Uncharacterized protein 97.9 0.00022 7.5E-09 57.7 12.3 72 134-207 16-89 (136)
4 3hd7_B Syntaxin-1A; membrane p 68.7 3.4 0.00012 31.5 3.0 9 95-103 97-105 (109)
5 3j1r_A Archaeal adhesion filam 55.8 5.3 0.00018 22.6 1.4 13 96-108 12-24 (26)
6 3hd7_B Syntaxin-1A; membrane p 52.0 1.5 5.1E-05 33.5 -1.8 7 94-100 100-106 (109)
7 2knc_B Integrin beta-3; transm 27.3 38 0.0013 24.2 2.5 20 88-107 14-33 (79)
8 3p5s_A CD38 molecule; cyclic A 27.1 13 0.00045 33.0 0.0 15 209-223 190-204 (278)
9 3kdp_B Sodium/potassium-transp 26.3 43 0.0015 29.8 3.2 26 95-121 27-55 (286)
10 3ixz_B Potassium-transporting 25.5 42 0.0014 29.9 3.0 20 99-118 56-75 (290)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.29 E-value=6.7e-06 Score=69.40 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeeccCC-ceeecCCCeEEEEE
Q 045712 112 DIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGKVS-EFYQGYKSIKRINI 190 (268)
Q Consensus 112 k~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~lP-~F~Q~~rntt~v~v 190 (268)
+.|++++.++++.+++.. ..+|.+.++++|||. ..+.+..+ +.++.-+|..|++|..+ ++..++.+++++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi-~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQI-SYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSE-EEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccce-EEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 689999999999887654 388999999999997 69999998 89999999999999987 58999999999999
Q ss_pred EEEeeccCChhHHHHHHhhh-cCCeEEEEEEEEEEE
Q 045712 191 PLQGKTEFSSGFQESLAEDK-KQGKIPLLIVVKAPI 225 (268)
Q Consensus 191 ~l~g~~~l~~~~~~~L~~d~-~~G~V~l~v~v~~~v 225 (268)
.++... .+.. .+..++ ..+.++.++++...+
T Consensus 116 pv~v~~---~~l~-~~~~~l~~~~~i~Y~L~g~L~i 147 (174)
T 1yyc_A 116 PVKVAY---SIAV-SLMKDMCTDWDIDYQLDIGLTF 147 (174)
T ss_dssp EEEESH---HHHH-HTCCCCCSSEEECEEEEEEEEE
T ss_pred EEEEEH---HHHH-HHHHhcCCCCccceEEEEEEEe
Confidence 988763 1111 122233 344566666554433
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.14 E-value=3.3e-06 Score=69.65 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=77.4
Q ss_pred CCcEEEEEeeEEEEEeeCCCCceeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeeccCC-ceeecCCCeEEEEE
Q 045712 112 DIPKYRIEEFKVEAFNVLPDLSLNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGKVS-EFYQGYKSIKRINI 190 (268)
Q Consensus 112 k~P~fsV~~~~v~~fnvs~~~~L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~lP-~F~Q~~rntt~v~v 190 (268)
+.|++++.++++.+++. ...+|.+.++++|||. +.+.+.++ +.+++-+|..+++|..+ ++..++.+++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi-~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEI-SFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEE-EEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccE-EEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 57888998888876543 3578999999999997 68999997 88888899999999987 68999999999999
Q ss_pred EEEeeccCChhHHHHHHhhhcCCeEEEEEEEEEEE
Q 045712 191 PLQGKTEFSSGFQESLAEDKKQGKIPLLIVVKAPI 225 (268)
Q Consensus 191 ~l~g~~~l~~~~~~~L~~d~~~G~V~l~v~v~~~v 225 (268)
.++... ......+.+-...+.++.+++++..+
T Consensus 93 pv~v~~---~~l~~~~~~l~~~~~i~Y~l~g~l~i 124 (151)
T 1xo8_A 93 PVVVPY---SILFNLARDVGVDWDIDYELQIGLTI 124 (151)
T ss_dssp CCCEEH---HHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred EEEEEH---HHHHHHHHhcccCCcccEEEEEEEEE
Confidence 887763 11112221112345677776655543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.87 E-value=0.00022 Score=57.74 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=60.1
Q ss_pred eeEEEEEEEEEeCCCCeeeEEEcCCcEEEEEeCCEEEeecc-CCceeecCCCeEEEEEEEEeec-cCChhHHHHHH
Q 045712 134 LNTEINVIVRAENPSDLISLQYEKGSSVTMNYIDKTICSGK-VSEFYQGYKSIKRINIPLQGKT-EFSSGFQESLA 207 (268)
Q Consensus 134 L~~~~~vtv~a~NPN~ki~i~Y~~~s~v~v~Y~g~~Lg~~~-lP~F~Q~~rntt~v~v~l~g~~-~l~~~~~~~L~ 207 (268)
-.+.|.+.+++.|||. +.+.++.+ +.+|+.+|..||+|. ...+..++.+.+++.+.+..+. .+.+...+-+.
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl-~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGY-HYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEE-EEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeece-EEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 4578999999999996 79999987 999999999999997 6789999999999999998885 55554444443
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=68.68 E-value=3.4 Score=31.47 Aligned_cols=9 Identities=11% Similarity=-0.326 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 045712 95 IIAFSIAGY 103 (268)
Q Consensus 95 i~l~g~~~~ 103 (268)
+++++++++
T Consensus 97 ~~i~~~~~~ 105 (109)
T 3hd7_B 97 GIIIASTIG 105 (109)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 333444443
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=55.78 E-value=5.3 Score=22.63 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHHHhhheeee
Q 045712 96 IAFSIAGYVIYAT 108 (268)
Q Consensus 96 ~l~g~~~~ilylv 108 (268)
++..+++.++|++
T Consensus 12 viav~aaVllylW 24 (26)
T 3j1r_A 12 LIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444544
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=52.01 E-value=1.5 Score=33.53 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 045712 94 LIIAFSI 100 (268)
Q Consensus 94 li~l~g~ 100 (268)
+.+++|+
T Consensus 100 ~~~~~~~ 106 (109)
T 3hd7_B 100 IASTIGG 106 (109)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 3334443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.27 E-value=38 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhheee
Q 045712 88 YCCLFFLIIAFSIAGYVIYA 107 (268)
Q Consensus 88 ~~~l~~li~l~g~~~~ilyl 107 (268)
++.+++.++++|++++++|-
T Consensus 14 v~gvi~gilliGllllliwk 33 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777764
No 8
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=27.11 E-value=13 Score=33.02 Aligned_cols=15 Identities=0% Similarity=0.058 Sum_probs=9.5
Q ss_pred hhcCCeEEEEEEEEE
Q 045712 209 DKKQGKIPLLIVVKA 223 (268)
Q Consensus 209 d~~~G~V~l~v~v~~ 223 (268)
+.+.|.|.+.+....
T Consensus 190 ~~A~G~V~VmLNGS~ 204 (278)
T 3p5s_A 190 ESACNTVRVVLNGSL 204 (278)
T ss_dssp HHCCSEEEEEEETTS
T ss_pred HhCCCeEEEEEcCCC
Confidence 457888776665443
No 9
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=26.27 E-value=43 Score=29.77 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=16.9
Q ss_pred HHHHHHHhh---heeeeeccCCcEEEEEee
Q 045712 95 IIAFSIAGY---VIYATFKIDIPKYRIEEF 121 (268)
Q Consensus 95 i~l~g~~~~---ilylv~rPk~P~fsV~~~ 121 (268)
++|+|++++ ++++.+.|+.|++. +..
T Consensus 27 ~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 27 GCLAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp HHHHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 444444444 44555899999999 555
No 10
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=25.50 E-value=42 Score=29.91 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=12.9
Q ss_pred HHHhhheeeeeccCCcEEEE
Q 045712 99 SIAGYVIYATFKIDIPKYRI 118 (268)
Q Consensus 99 g~~~~ilylv~rPk~P~fsV 118 (268)
++.+.+++..+.|+.|++.-
T Consensus 56 a~~m~v~l~Tld~~~Pkyqd 75 (290)
T 3ixz_B 56 ALCIYVLMRTIDPYTPDYQD 75 (290)
T ss_pred HHHHHHHHHhCCCCCCCccc
Confidence 33344555567889999863
Done!