BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045715
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 44 GMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ 103
PS C V CS + + + TT+ Y Y+ + L +F +L
Sbjct: 10 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYD----NQITKLEPGVFDRLTQLT 65
Query: 104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF 140
RLDL N T + F L QL L+L +N
Sbjct: 66 RLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDNQL 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 44 GMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ 103
PS C V CS + + + TT+ Y Y+ + L +F +L
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYD----NQITKLEPGVFDRLTQLT 57
Query: 104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF 140
RLDL N T + F L QL L+L +N
Sbjct: 58 RLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDNQL 90
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 44 GMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ 103
PS C V CS + + + TT+ Y Y+ + L +F +L
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYD----NRITKLEPGVFDRLTQLT 57
Query: 104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF 140
RLDL N T + F L QL L+L +N
Sbjct: 58 RLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDNQL 90
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 39 VGEDDGMPSDCCDDWVGVKCSATTRRVMQL-SLNYTTKFNYSYNSVYWEGVLVLNMSLFH 97
+ DD SDCC+ +QL +L++ N SYN L L F
Sbjct: 357 LSHDDIETSDCCN--------------LQLRNLSHLQSLNLSYNEP-----LSLKTEAFK 397
Query: 98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
+L+ LDL FT + A F +L LK+LNL ++
Sbjct: 398 ECPQLELLDLA---FTRLKVKDAQSPFQNLHLLKVLNLSHS 435
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 88 VLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND 142
+ V+ F P+++L+R+DL N + + A D+F LR L L L N +
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE 94
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 88 VLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND 142
+ V+ F P+++L+R+DL N + + A D+F LR L L L N +
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE 94
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 41 EDDGMPSDCCD-----DWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSL 95
++DGM +C ++ G++ R + N T++ + S ++ N S+
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN----NGSM 631
Query: 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXX 155
LD+ N +G GS+ L +LNLG+ND + +I
Sbjct: 632 MF-------LDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 156 XXXXRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
N ++G R Q ++ L L +DLS+N
Sbjct: 681 ILDLSSNKLDG-RIPQAMSALTMLTEIDLSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 41 EDDGMPSDCCD-----DWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSL 95
++DGM +C ++ G++ R + N T++ + S ++ N S+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN----NGSM 634
Query: 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXX 155
LD+ N +G GS+ L +LNLG+ND + +I
Sbjct: 635 MF-------LDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 156 XXXXRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
N ++G R Q ++ L L +DLS+N
Sbjct: 684 ILDLSSNKLDG-RIPQAMSALTMLTEIDLSNN 714
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 97 HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF-NDNILP 146
HP L+ LDL N F + FG++ QLK L L ++LP
Sbjct: 87 HPTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,843,795
Number of Sequences: 62578
Number of extensions: 218505
Number of successful extensions: 477
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 19
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)