Query 045715
Match_columns 199
No_of_seqs 293 out of 2715
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.1E-21 6.8E-26 177.8 14.8 166 8-196 27-230 (968)
2 PLN03150 hypothetical protein; 99.7 4.5E-17 9.8E-22 143.7 14.0 162 5-191 367-529 (623)
3 PLN00113 leucine-rich repeat r 99.5 2E-14 4.4E-19 132.8 8.6 113 73-196 477-589 (968)
4 KOG0617 Ras suppressor protein 99.4 4.4E-14 9.6E-19 103.8 -0.6 114 69-197 31-145 (264)
5 KOG4194 Membrane glycoprotein 99.4 3.5E-14 7.7E-19 120.6 -1.3 94 92-190 333-429 (873)
6 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.6E-19 106.8 -4.0 112 70-196 55-167 (264)
7 PLN03150 hypothetical protein; 99.4 1.3E-12 2.8E-17 115.6 7.9 91 101-197 419-509 (623)
8 PF14580 LRR_9: Leucine-rich r 99.3 1.4E-12 3E-17 97.4 5.7 106 71-190 19-126 (175)
9 KOG4194 Membrane glycoprotein 99.3 7.3E-12 1.6E-16 106.7 5.6 126 52-190 53-186 (873)
10 KOG0472 Leucine-rich repeat pr 99.2 8.2E-12 1.8E-16 102.3 4.0 114 64-190 389-541 (565)
11 PF13855 LRR_8: Leucine rich r 99.2 1.3E-11 2.9E-16 76.4 2.6 60 129-189 2-61 (61)
12 KOG4237 Extracellular matrix p 99.1 5.5E-12 1.2E-16 103.0 -1.0 132 55-198 50-183 (498)
13 PF13855 LRR_8: Leucine rich r 99.1 4.1E-11 8.8E-16 74.1 2.6 61 100-164 1-61 (61)
14 PRK15370 E3 ubiquitin-protein 99.1 1.6E-09 3.5E-14 97.4 13.4 76 101-190 221-296 (754)
15 KOG0444 Cytoskeletal regulator 99.1 1.7E-11 3.7E-16 105.5 -0.1 105 74-190 129-258 (1255)
16 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 86.2 4.2 102 70-184 41-147 (175)
17 KOG0444 Cytoskeletal regulator 99.1 3.5E-11 7.6E-16 103.7 0.7 110 70-190 77-186 (1255)
18 KOG0618 Serine/threonine phosp 99.0 9.7E-11 2.1E-15 104.2 -0.2 90 96-193 379-468 (1081)
19 KOG0618 Serine/threonine phosp 99.0 6.1E-11 1.3E-15 105.4 -1.5 106 70-188 382-487 (1081)
20 KOG1259 Nischarin, modulator o 99.0 7.9E-11 1.7E-15 93.6 -0.9 103 74-190 310-412 (490)
21 PF08263 LRRNT_2: Leucine rich 98.8 5.2E-09 1.1E-13 60.0 4.4 41 9-59 2-43 (43)
22 KOG0472 Leucine-rich repeat pr 98.8 5.9E-10 1.3E-14 91.6 -1.1 88 95-190 223-310 (565)
23 KOG1259 Nischarin, modulator o 98.8 1.6E-09 3.5E-14 86.3 0.6 101 74-190 287-387 (490)
24 cd00116 LRR_RI Leucine-rich re 98.8 6.4E-09 1.4E-13 84.4 3.9 116 73-190 110-234 (319)
25 KOG4237 Extracellular matrix p 98.7 3E-09 6.5E-14 87.2 1.4 93 93-190 267-359 (498)
26 cd00116 LRR_RI Leucine-rich re 98.7 8.2E-09 1.8E-13 83.8 3.5 38 152-190 250-291 (319)
27 PRK15370 E3 ubiquitin-protein 98.6 3.7E-08 8.1E-13 88.7 5.6 59 129-196 326-384 (754)
28 PRK15387 E3 ubiquitin-protein 98.6 6.5E-08 1.4E-12 87.1 6.3 79 100-192 382-460 (788)
29 KOG0532 Leucine-rich repeat (L 98.6 8.2E-09 1.8E-13 88.1 -1.1 93 93-196 159-251 (722)
30 PF12799 LRR_4: Leucine Rich r 98.5 1.3E-07 2.8E-12 54.3 3.5 36 153-190 2-37 (44)
31 PRK15387 E3 ubiquitin-protein 98.5 3.9E-07 8.5E-12 82.2 8.1 60 129-196 283-359 (788)
32 PLN03210 Resistant to P. syrin 98.5 8.6E-07 1.9E-11 83.9 9.9 103 72-187 612-714 (1153)
33 PLN03210 Resistant to P. syrin 98.5 1.1E-06 2.3E-11 83.3 9.9 104 72-190 779-883 (1153)
34 PF12799 LRR_4: Leucine Rich r 98.4 3.6E-07 7.8E-12 52.5 3.8 37 129-166 2-38 (44)
35 KOG4579 Leucine-rich repeat (L 98.4 3E-08 6.5E-13 70.6 -1.9 85 98-190 51-136 (177)
36 KOG0532 Leucine-rich repeat (L 98.4 3.1E-08 6.6E-13 84.7 -2.3 112 69-198 119-230 (722)
37 KOG1859 Leucine-rich repeat pr 98.4 1.5E-08 3.2E-13 88.9 -4.5 101 74-191 167-268 (1096)
38 COG4886 Leucine-rich repeat (L 98.3 4.1E-07 8.8E-12 76.4 3.8 85 98-190 114-199 (394)
39 KOG1859 Leucine-rich repeat pr 98.2 2.4E-08 5.3E-13 87.5 -5.6 107 70-190 186-292 (1096)
40 KOG1644 U2-associated snRNP A' 98.2 2.8E-06 6E-11 64.3 5.3 105 70-186 41-149 (233)
41 KOG0531 Protein phosphatase 1, 98.2 4.7E-07 1E-11 76.7 1.3 85 96-190 91-175 (414)
42 COG4886 Leucine-rich repeat (L 98.2 1E-06 2.2E-11 74.0 2.9 79 72-162 141-219 (394)
43 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.2E-12 67.9 -2.7 105 74-191 56-160 (177)
44 KOG0531 Protein phosphatase 1, 98.2 4.7E-07 1E-11 76.7 0.8 104 70-190 94-199 (414)
45 KOG3207 Beta-tubulin folding c 98.1 5.1E-07 1.1E-11 75.1 0.5 88 98-190 220-314 (505)
46 KOG4658 Apoptotic ATPase [Sign 98.1 1.8E-06 3.9E-11 79.2 2.9 107 73-188 547-653 (889)
47 KOG3207 Beta-tubulin folding c 98.0 2.4E-06 5.3E-11 71.2 1.4 111 72-190 223-339 (505)
48 KOG1909 Ran GTPase-activating 97.9 2.4E-06 5.3E-11 69.3 0.8 118 71-190 185-311 (382)
49 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 60.4 4.8 86 99-190 41-126 (233)
50 KOG4658 Apoptotic ATPase [Sign 97.7 2.2E-05 4.7E-10 72.2 2.9 85 99-189 544-630 (889)
51 KOG2739 Leucine-rich acidic nu 97.6 3.1E-05 6.7E-10 60.6 2.5 85 93-184 58-150 (260)
52 KOG1909 Ran GTPase-activating 97.4 5.9E-05 1.3E-09 61.4 1.7 118 72-190 93-226 (382)
53 KOG3665 ZYG-1-like serine/thre 97.4 0.00022 4.8E-09 64.2 4.7 111 70-190 147-263 (699)
54 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3E-09 57.1 2.9 84 99-190 42-129 (260)
55 KOG2123 Uncharacterized conser 97.3 1E-05 2.2E-10 64.3 -4.6 84 94-183 35-123 (388)
56 KOG2982 Uncharacterized conser 97.2 0.00012 2.7E-09 58.7 1.4 83 74-163 74-157 (418)
57 PF13306 LRR_5: Leucine rich r 97.2 0.0011 2.3E-08 46.5 5.8 97 91-199 26-122 (129)
58 KOG2982 Uncharacterized conser 97.2 0.00013 2.9E-09 58.5 1.2 91 98-190 69-159 (418)
59 PF13306 LRR_5: Leucine rich r 97.2 0.00083 1.8E-08 47.0 5.2 97 91-198 3-99 (129)
60 KOG3665 ZYG-1-like serine/thre 97.0 0.00043 9.3E-09 62.4 3.0 89 97-190 145-233 (699)
61 KOG2123 Uncharacterized conser 96.6 9.5E-05 2.1E-09 58.8 -4.2 87 98-192 17-103 (388)
62 KOG0473 Leucine-rich repeat pr 96.5 4E-05 8.6E-10 59.5 -6.5 83 99-189 41-123 (326)
63 smart00369 LRR_TYP Leucine-ric 96.4 0.0025 5.4E-08 31.8 1.7 20 177-198 2-21 (26)
64 smart00370 LRR Leucine-rich re 96.4 0.0025 5.4E-08 31.8 1.7 20 177-198 2-21 (26)
65 PRK15386 type III secretion pr 96.3 0.016 3.5E-07 49.0 7.1 14 71-84 52-65 (426)
66 PF00560 LRR_1: Leucine Rich R 96.2 0.0015 3.2E-08 31.4 0.1 11 155-165 3-13 (22)
67 PF00560 LRR_1: Leucine Rich R 96.0 0.0031 6.6E-08 30.3 1.0 16 102-118 2-17 (22)
68 COG5238 RNA1 Ran GTPase-activa 96.0 0.015 3.4E-07 46.4 5.1 46 96-141 88-133 (388)
69 KOG2120 SCF ubiquitin ligase, 95.8 0.00038 8.2E-09 56.0 -4.6 108 73-188 187-324 (419)
70 COG5238 RNA1 Ran GTPase-activa 95.7 0.014 3E-07 46.7 3.8 121 71-193 30-173 (388)
71 PF13504 LRR_7: Leucine rich r 95.7 0.007 1.5E-07 27.1 1.3 13 178-190 2-14 (17)
72 PRK15386 type III secretion pr 95.6 0.054 1.2E-06 45.9 7.1 31 153-187 157-187 (426)
73 smart00370 LRR Leucine-rich re 94.9 0.029 6.3E-07 27.8 2.3 21 152-173 2-22 (26)
74 smart00369 LRR_TYP Leucine-ric 94.9 0.029 6.3E-07 27.8 2.3 21 152-173 2-22 (26)
75 KOG0473 Leucine-rich repeat pr 93.5 0.0014 3.1E-08 51.0 -6.3 65 96-166 61-125 (326)
76 KOG2120 SCF ubiquitin ligase, 93.4 0.0047 1E-07 49.9 -3.8 88 100-190 185-273 (419)
77 smart00365 LRR_SD22 Leucine-ri 90.3 0.28 6E-06 24.5 1.9 13 178-190 3-15 (26)
78 smart00364 LRR_BAC Leucine-ric 90.1 0.22 4.8E-06 24.9 1.4 17 178-196 3-19 (26)
79 KOG3864 Uncharacterized conser 89.2 0.063 1.4E-06 41.0 -1.4 80 101-185 102-184 (221)
80 PF13516 LRR_6: Leucine Rich r 88.1 0.26 5.7E-06 23.7 0.9 14 177-190 2-15 (24)
81 KOG1947 Leucine rich repeat pr 88.0 0.5 1.1E-05 40.3 3.1 93 97-189 211-307 (482)
82 KOG3763 mRNA export factor TAP 84.0 0.59 1.3E-05 40.9 1.6 67 97-167 215-285 (585)
83 smart00368 LRR_RI Leucine rich 83.3 1.1 2.3E-05 22.6 1.8 14 177-190 2-15 (28)
84 KOG4308 LRR-containing protein 83.2 0.037 8E-07 48.0 -6.0 118 72-190 173-303 (478)
85 KOG3763 mRNA export factor TAP 77.2 1.4 3.1E-05 38.6 1.7 64 126-190 216-283 (585)
86 KOG1947 Leucine rich repeat pr 70.1 3.2 6.9E-05 35.3 2.1 65 96-164 239-307 (482)
87 KOG4308 LRR-containing protein 69.9 0.16 3.4E-06 44.2 -5.9 116 73-190 89-217 (478)
88 TIGR00864 PCC polycystin catio 59.4 7.6 0.00016 40.6 2.7 32 106-141 1-32 (2740)
89 KOG3864 Uncharacterized conser 53.9 4.6 9.9E-05 31.1 0.1 64 128-191 101-166 (221)
90 TIGR00864 PCC polycystin catio 53.4 9.5 0.00021 39.9 2.2 32 77-113 1-32 (2740)
91 smart00367 LRR_CC Leucine-rich 39.4 24 0.00052 17.0 1.5 15 176-190 1-16 (26)
92 PF06764 DUF1223: Protein of u 20.6 45 0.00097 25.6 0.7 19 2-21 8-26 (202)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=3.1e-21 Score=177.78 Aligned_cols=166 Identities=30% Similarity=0.440 Sum_probs=116.3
Q ss_pred cHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCC---------------
Q 045715 8 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNY--------------- 72 (199)
Q Consensus 8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~--------------- 72 (199)
.+.|+.||++||+++.+|. ..+.+|.. ..+|| .|.||+|++ .++|+.+++++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~ 93 (968)
T PLN00113 27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP 93 (968)
T ss_pred CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence 6688999999999997665 46789976 57899 999999985 46888887653
Q ss_pred -ccceeccCCCccccccccccccccCCCCCCcEEECC----------------------CCccCccccccchhhccCCCC
Q 045715 73 -TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLP----------------------MNWFTGIYENRAYDSFGSLRQ 129 (199)
Q Consensus 73 -~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls----------------------~N~l~~~~p~~~~~~~~~l~~ 129 (199)
++.|+|++|.+... ++...+..+++|++|+|+ +|.+++.+|. .++.+++
T Consensus 94 ~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~ 165 (968)
T PLN00113 94 YIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSS 165 (968)
T ss_pred CCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCC
Confidence 47889999887531 223333344445555544 4444444554 6667777
Q ss_pred CCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 130 LKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 130 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
|++|++++|.+.+.+|..++++++|++|+|++|.+.+.+|. .++++++|++|++++|+++ +.+|.
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~~~p~ 230 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLS-GEIPY 230 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccC-CcCCh
Confidence 77777777777767777777777777777777777765665 6777777777777777776 34454
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=4.5e-17 Score=143.71 Aligned_cols=162 Identities=25% Similarity=0.320 Sum_probs=123.5
Q ss_pred CCCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCCccceeccCCCcc
Q 045715 5 KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVY 84 (199)
Q Consensus 5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~L~ls~N~~~ 84 (199)
....++|..||+.+|+.+..+. ..+|.. +.|. ...| .|.||.|....... ...++.|+|++|.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g-~~C~-p~~~-~w~Gv~C~~~~~~~----~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG-DPCV-PQQH-PWSGADCQFDSTKG----KWFIDGLGLDNQGLR 431 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc--------cCCCCC-CCCC-Cccc-ccccceeeccCCCC----ceEEEEEECCCCCcc
Confidence 4567789999999999885443 247875 1000 0113 69999995321110 001234555666665
Q ss_pred ccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcC
Q 045715 85 WEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSI 164 (199)
Q Consensus 85 ~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 164 (199)
. ..+..+..+++|+.|+|++|.+++.+|. .+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++
T Consensus 432 g-----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 432 G-----FIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred c-----cCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 4 3366788999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CCccchhhccC-CCCCCEEeCcCCccCC
Q 045715 165 EGSRTKQGLAK-LKNLEALDLSSNYYIH 191 (199)
Q Consensus 165 ~~~ip~~~~~~-l~~L~~L~Ls~N~l~~ 191 (199)
++.+|. .+.. ..++..+++.+|....
T Consensus 503 ~g~iP~-~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 503 SGRVPA-ALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cccCCh-HHhhccccCceEEecCCcccc
Confidence 998997 5665 3577889999998653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.53 E-value=2e-14 Score=132.83 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=96.2
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
++.|++++|.+.. ..+..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++.+|..+..++
T Consensus 477 L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 477 LENLDLSRNQFSG-----AVPRKLGSLSELMQLKLSENKLSGEIPD----ELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred ceEEECcCCccCC-----ccChhhhhhhccCEEECcCCcceeeCCh----HHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 4566666666654 3356677888999999999999988888 899999999999999999999999999999
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
+|+.|+|++|++++.+|. .+.++++|++|++++|+++ +.+|.
T Consensus 548 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~l~ls~N~l~-~~~p~ 589 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPK-NLGNVESLVQVNISHNHLH-GSLPS 589 (968)
T ss_pred cCCEEECCCCcccccCCh-hHhcCcccCEEeccCCcce-eeCCC
Confidence 999999999999988887 7889999999999999998 55664
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=4.4e-14 Score=103.76 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=86.1
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
+++..+.|.||+|.+.. + +..+..+.+|+.|++++|+++. +|. .++.++.|+.|+++-|++. ..|..|
T Consensus 31 ~~s~ITrLtLSHNKl~~-----v-ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-----V-PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred chhhhhhhhcccCceee-----c-CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-cCcccc
Confidence 45566777788888775 3 3446778888888888888887 666 7888888888888888887 678888
Q ss_pred cCCCCCCEEecCCCcCCCc-cchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 149 NTLTSLTTLNLRYNSIEGS-RTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
+.+|.|+.|||.+|++... +| +.|..+..|+.|+|++|.+. .+|.+
T Consensus 99 gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dndfe--~lp~d 145 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFE--ILPPD 145 (264)
T ss_pred CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCCcc--cCChh
Confidence 8888888888888887753 44 46777888888888888887 55654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.38 E-value=3.5e-14 Score=120.59 Aligned_cols=94 Identities=30% Similarity=0.388 Sum_probs=68.6
Q ss_pred cccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh---hhcCCCCCCEEecCCCcCCCcc
Q 045715 92 NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP---YLNTLTSLTTLNLRYNSIEGSR 168 (199)
Q Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~i 168 (199)
++..|..+.+|+.|+|+.|+++.+... .|..+++|++|||.+|.+++.+.+ .|.+|++|+.|+|.+|++.. |
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~----af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I 407 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEG----AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-I 407 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhh----HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-c
Confidence 333444444444444444444443333 677788888888888888765543 57789999999999999988 8
Q ss_pred chhhccCCCCCCEEeCcCCccC
Q 045715 169 TKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 169 p~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|...|.++..|++|||.+|.|.
T Consensus 408 ~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred chhhhccCcccceecCCCCcce
Confidence 8888999999999999999987
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-14 Score=106.75 Aligned_cols=112 Identities=29% Similarity=0.353 Sum_probs=87.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC-CCChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN-DNILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~ 148 (199)
+.+++.|++++|++.. + |..++.+++|+.|++..|++.- .|. .|+.++.|+.|||.+|.+. ..+|..|
T Consensus 55 l~nlevln~~nnqie~-----l-p~~issl~klr~lnvgmnrl~~-lpr----gfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEE-----L-PTSISSLPKLRILNVGMNRLNI-LPR----GFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred hhhhhhhhcccchhhh-----c-Chhhhhchhhhheecchhhhhc-Ccc----ccCCCchhhhhhccccccccccCCcch
Confidence 3455778888888864 3 4556788888888888888876 677 8888888888888888885 4567777
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
..+..|+.|+|+.|.+.- +|+ .++++++|+.|.+..|.+- ++|.
T Consensus 124 f~m~tlralyl~dndfe~-lp~-dvg~lt~lqil~lrdndll--~lpk 167 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEI-LPP-DVGKLTNLQILSLRDNDLL--SLPK 167 (264)
T ss_pred hHHHHHHHHHhcCCCccc-CCh-hhhhhcceeEEeeccCchh--hCcH
Confidence 778888888888888877 776 6888888888888888876 5554
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=115.63 Aligned_cols=91 Identities=34% Similarity=0.522 Sum_probs=85.3
Q ss_pred CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCC
Q 045715 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180 (199)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 180 (199)
.++.|+|++|.+++.+|. .+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|. .++++++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence 378899999999999998 999999999999999999999999999999999999999999998887 899999999
Q ss_pred EEeCcCCccCCCCcCCC
Q 045715 181 ALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 181 ~L~Ls~N~l~~~~ip~~ 197 (199)
.|+|++|+++ +.+|..
T Consensus 494 ~L~Ls~N~l~-g~iP~~ 509 (623)
T PLN03150 494 ILNLNGNSLS-GRVPAA 509 (623)
T ss_pred EEECcCCccc-ccCChH
Confidence 9999999998 667754
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.4e-12 Score=97.40 Aligned_cols=106 Identities=28% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh-
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL- 148 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~- 148 (199)
...+.|+|++|.|.. .+.+. .+.+|+.|++++|.++. ++ .+..++.|+.|++++|+++. +...+
T Consensus 19 ~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~~-i~~~l~ 84 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRISS-ISEGLD 84 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--CHHHH
T ss_pred ccccccccccccccc-------ccchhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCCc-cccchH
Confidence 345778888888876 22343 57889999999999987 43 57788999999999999984 43334
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+++|+.|+|++|+|...-.-..+..+++|+.|+|.+|+++
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 468899999999999886322235778899999999999987
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.25 E-value=7.3e-12 Score=106.75 Aligned_cols=126 Identities=23% Similarity=0.261 Sum_probs=71.4
Q ss_pred CCCceEecCCCCCeEEE--------ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhh
Q 045715 52 DWVGVKCSATTRRVMQL--------SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDS 123 (199)
Q Consensus 52 ~w~gv~C~~~~~~v~~l--------~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 123 (199)
.-.-..|+. .++..+ -.+..++|++++|.++- +....|.++++|+.+++.+|.++. +|. .
T Consensus 53 ~~~lldcs~--~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~-----id~~~f~nl~nLq~v~l~~N~Lt~-IP~----f 120 (873)
T KOG4194|consen 53 NTRLLDCSD--RELEAIDKSRLKGFLPSQTQTLDLSNNKLSH-----IDFEFFYNLPNLQEVNLNKNELTR-IPR----F 120 (873)
T ss_pred CceeeecCc--cccccccccccCCcCccceeeeecccccccc-----CcHHHHhcCCcceeeeeccchhhh-ccc----c
Confidence 555566764 233333 23344789999999987 556677788888888888888876 564 2
Q ss_pred ccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 124 FGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 124 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.....+|+.|+|.+|.++..-.+.+..++.|++||||.|.|+. +|...|..-.++++|+|++|+|+
T Consensus 121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccc
Confidence 2222335555555555554444445555555555555555544 44333433344444444444444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.22 E-value=8.2e-12 Score=102.29 Aligned_cols=114 Identities=27% Similarity=0.337 Sum_probs=94.1
Q ss_pred CeEEEecCCc----------------cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715 64 RVMQLSLNYT----------------TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127 (199)
Q Consensus 64 ~v~~l~l~~~----------------~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l 127 (199)
-|+.+++++. +.+.+++|.+.. .+..+..+++|..|+|++|.+.. +|. +++.+
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf------v~~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~l 457 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF------VPLELSQLQKLTFLDLSNNLLND-LPE----EMGSL 457 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc------chHHHHhhhcceeeecccchhhh-cch----hhhhh
Confidence 3777777765 456777777765 25567889999999999999987 788 88899
Q ss_pred CCCCEEEcCCCCCCC-----------------------CChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeC
Q 045715 128 RQLKMLNLGNNDFND-----------------------NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL 184 (199)
Q Consensus 128 ~~L~~L~Ls~N~l~~-----------------------~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 184 (199)
..|+.|++++|+|.- ..|+.+.+|.+|.+|||.+|.+.. +|+ .++++++|++|++
T Consensus 458 v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 458 VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLEL 535 (565)
T ss_pred hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CCh-hhccccceeEEEe
Confidence 999999999988752 122336778999999999999998 998 8999999999999
Q ss_pred cCCccC
Q 045715 185 SSNYYI 190 (199)
Q Consensus 185 s~N~l~ 190 (199)
++|+|.
T Consensus 536 ~gNpfr 541 (565)
T KOG0472|consen 536 DGNPFR 541 (565)
T ss_pred cCCccC
Confidence 999997
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.18 E-value=1.3e-11 Score=76.37 Aligned_cols=60 Identities=32% Similarity=0.442 Sum_probs=37.0
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCcc
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l 189 (199)
+|++|++++|+++...+..|..+++|++|++++|+++. ++++.|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 45666666666664444556666666666666666665 5555666666666666666654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=5.5e-12 Score=102.96 Aligned_cols=132 Identities=26% Similarity=0.246 Sum_probs=106.5
Q ss_pred ceEecCCCCCeEEEecCC-ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEE
Q 045715 55 GVKCSATTRRVMQLSLNY-TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKML 133 (199)
Q Consensus 55 gv~C~~~~~~v~~l~l~~-~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L 133 (199)
-|+|++....-+..+|+. .+.+.|..|.|+. +++..|..+++|+.||||+|.|+.+.|+ +|.++.+|..|
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~L 120 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSL 120 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHH
Confidence 378876554444455653 4678888999987 8899999999999999999999999998 99999999887
Q ss_pred EcCC-CCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 134 NLGN-NDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 134 ~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
-+-+ |+|+......|+++.+|+.|.+.-|++.- ++.+.|..+++|..|.+-+|.+. .+++..
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q--~i~~~t 183 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQ--SICKGT 183 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhh--hhcccc
Confidence 6655 99996666678888888888888888887 66668888888888888888887 565543
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=4.1e-11 Score=74.15 Aligned_cols=61 Identities=33% Similarity=0.446 Sum_probs=43.9
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSI 164 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 164 (199)
++|++|++++|+++...+. .|..+++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777765555 677777777777777777765566777777777777777764
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=1.6e-09 Score=97.36 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=41.8
Q ss_pred CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCC
Q 045715 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180 (199)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 180 (199)
+|+.|++++|.++. +|. .+. .+|+.|+|++|+++ .+|..+. .+|+.|++++|+++. +|. .+. ++|+
T Consensus 221 nL~~L~Ls~N~Lts-LP~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~-~l~--~sL~ 286 (754)
T PRK15370 221 NIKTLYANSNQLTS-IPA----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE-NLP--EELR 286 (754)
T ss_pred CCCEEECCCCcccc-CCh----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc-ccC--CCCc
Confidence 45555555555554 333 221 24555555555555 3444432 356667777776665 554 332 4677
Q ss_pred EEeCcCCccC
Q 045715 181 ALDLSSNYYI 190 (199)
Q Consensus 181 ~L~Ls~N~l~ 190 (199)
.|++++|+|+
T Consensus 287 ~L~Ls~N~Lt 296 (754)
T PRK15370 287 YLSVYDNSIR 296 (754)
T ss_pred EEECCCCccc
Confidence 7777777776
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.08 E-value=1.7e-11 Score=105.54 Aligned_cols=105 Identities=34% Similarity=0.410 Sum_probs=62.5
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC------------
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN------------ 141 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~------------ 141 (199)
.+|+||+|+|.. ++...|.+++-|-+||||+|++.. +|+ ....+..|+.|.|++|.+.
T Consensus 129 iVLNLS~N~Iet-----IPn~lfinLtDLLfLDLS~NrLe~-LPP----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 129 IVLNLSYNNIET-----IPNSLFINLTDLLFLDLSNNRLEM-LPP----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS 198 (1255)
T ss_pred EEEEcccCcccc-----CCchHHHhhHhHhhhccccchhhh-cCH----HHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence 467888888876 666777788888888888888877 444 3333444444444444331
Q ss_pred -------------CCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 142 -------------DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 142 -------------~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+|.++..+.+|..++||.|.+.. +|. .+.++++|+.|+||+|+|+
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chH-HHhhhhhhheeccCcCcee
Confidence 1234444445555555555555554 554 5555666666666666555
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.7e-10 Score=86.24 Aligned_cols=102 Identities=27% Similarity=0.323 Sum_probs=51.8
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCC-Chhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDN-ILPY 147 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~-~p~~ 147 (199)
+..++.|++++|.+.. .+.+..++.|+.|++++|+++.. +. .+ ..+++|++|++++|++... .-..
T Consensus 41 l~~L~~L~Ls~N~I~~-------l~~l~~L~~L~~L~L~~N~I~~i-~~----~l~~~lp~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-------LEGLPGLPRLKTLDLSNNRISSI-SE----GLDKNLPNLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp -TT--EEE-TTS--S---------TT----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred hcCCCEEECCCCCCcc-------ccCccChhhhhhcccCCCCCCcc-cc----chHHhCCcCCEEECcCCcCCChHHhHH
Confidence 5677899999999986 34577899999999999999984 33 34 4689999999999999642 2356
Q ss_pred hcCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeC
Q 045715 148 LNTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDL 184 (199)
Q Consensus 148 ~~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~L 184 (199)
+..+++|+.|+|.+|+++. .+. ..+..+|+|+.||-
T Consensus 109 L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred HHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 7889999999999999986 332 13678999999974
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.05 E-value=3.5e-11 Score=103.66 Aligned_cols=110 Identities=23% Similarity=0.217 Sum_probs=82.7
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
|+.++.+.+..|++...|+ |..+..+..|+.||||.|++.. .|. .+..-+++-+|+||+|+|..+.-+.|.
T Consensus 77 Lp~LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~IetIPn~lfi 147 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIETIPNSLFI 147 (1255)
T ss_pred chhhHHHhhhccccccCCC----Cchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccccCCchHHH
Confidence 4555677777777777664 4445568888888888888887 676 777778888888888888743334466
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++.|-.|+||+|++.. +|+ .+..+..|++|+|++|.+.
T Consensus 148 nLtDLLfLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhHhHhhhccccchhhh-cCH-HHHHHhhhhhhhcCCChhh
Confidence 88888888888888877 777 5777888888888888764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=9.7e-11 Score=104.18 Aligned_cols=90 Identities=28% Similarity=0.382 Sum_probs=41.0
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
+.++++|+.|+|++|++.. +|. ..+.++..|++|+||+|+++ .+|..+..++.|++|...+|.+.. +| .+..
T Consensus 379 l~~~~hLKVLhLsyNrL~~-fpa---s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e~~~ 450 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNS-FPA---SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--ELAQ 450 (1081)
T ss_pred hccccceeeeeeccccccc-CCH---HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--hhhh
Confidence 3444445555555554444 222 13444444455555555554 344444444444444444444443 34 2444
Q ss_pred CCCCCEEeCcCCccCCCC
Q 045715 176 LKNLEALDLSSNYYIHGS 193 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~~~~ 193 (199)
++.|+.+|+|.|+|+...
T Consensus 451 l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred cCcceEEecccchhhhhh
Confidence 444444444444444333
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=6.1e-11 Score=105.41 Aligned_cols=106 Identities=26% Similarity=0.314 Sum_probs=90.1
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
..+++.|+|++|+++. ++...+.++..|+.|+||+|+++. +|. .+..+..|++|....|++. ..| .+.
T Consensus 382 ~~hLKVLhLsyNrL~~-----fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNS-----FPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccceeeeeeccccccc-----CCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 4466899999999986 677788999999999999999998 777 8999999999999999998 567 789
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 188 (199)
.++.|+.+|++.|+++...-+ ....-++|++||+++|.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCc
Confidence 999999999999999873322 22233899999999997
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=7.9e-11 Score=93.62 Aligned_cols=103 Identities=28% Similarity=0.295 Sum_probs=68.6
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.|++|+|.+.. ...+..+++|+.||||+|.++.. .+ .-..+.+++.|.|+.|.+. ....++.+.+
T Consensus 310 r~L~lS~N~i~~-------v~nLa~L~~L~~LDLS~N~Ls~~-~G----wh~KLGNIKtL~La~N~iE--~LSGL~KLYS 375 (490)
T KOG1259|consen 310 RRLILSQNRIRT-------VQNLAELPQLQLLDLSGNLLAEC-VG----WHLKLGNIKTLKLAQNKIE--TLSGLRKLYS 375 (490)
T ss_pred eEEeccccceee-------ehhhhhcccceEeecccchhHhh-hh----hHhhhcCEeeeehhhhhHh--hhhhhHhhhh
Confidence 555666665554 22345566677777777766653 22 3345666667777777664 2334667788
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|..||+++|+|...-.-..++++|.|+++.|.+|++.
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8999999999886323345888999999999999988
No 21
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.85 E-value=5.2e-09 Score=59.96 Aligned_cols=41 Identities=39% Similarity=0.738 Sum_probs=29.1
Q ss_pred HHhHHHHHHHHhcccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 045715 9 ETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCS 59 (199)
Q Consensus 9 ~~~~~al~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~ 59 (199)
++|++||++||+++.+ +. ..+.+|.... ..+|| +|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C-~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPC-SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CC-CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCe-eeccEEeC
Confidence 6799999999999985 43 4799999810 27999 99999995
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.79 E-value=5.9e-10 Score=91.57 Aligned_cols=88 Identities=25% Similarity=0.287 Sum_probs=46.2
Q ss_pred ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715 95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174 (199)
Q Consensus 95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 174 (199)
.|..+..|.+|++..|+++- +|. +....++++..|||..|+++ ..|..+--+.+|+.||+++|.|++ +|. .++
T Consensus 223 ef~gcs~L~Elh~g~N~i~~-lpa---e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~-sLg 295 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEM-LPA---EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY-SLG 295 (565)
T ss_pred CCCccHHHHHHHhcccHHHh-hHH---HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc-ccc
Confidence 34444444444444444443 222 02235555666666666665 455555555556666666666655 554 555
Q ss_pred CCCCCCEEeCcCCccC
Q 045715 175 KLKNLEALDLSSNYYI 190 (199)
Q Consensus 175 ~l~~L~~L~Ls~N~l~ 190 (199)
++ +|+.|.+.+|.+.
T Consensus 296 nl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLR 310 (565)
T ss_pred cc-eeeehhhcCCchH
Confidence 55 5566666555553
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.6e-09 Score=86.27 Aligned_cols=101 Identities=32% Similarity=0.361 Sum_probs=78.0
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+++|||+|.|+. + .+.+.-+|.++.|++|+|.+... + .+..+++|+.|||++|.++ .+...-..+.+
T Consensus 287 telDLS~N~I~~-----i-DESvKL~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 287 TELDLSGNLITQ-----I-DESVKLAPKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred hhccccccchhh-----h-hhhhhhccceeEEeccccceeee--h----hhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 678888888875 2 33445578889999999988863 2 6778888999999999887 34444456777
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.++|.|+.|.+.. +. .++.+-+|..||+++|+|.
T Consensus 354 IKtL~La~N~iE~-LS--GL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 354 IKTLKLAQNKIET-LS--GLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred EeeeehhhhhHhh-hh--hhHhhhhheeccccccchh
Confidence 8888999998876 43 5788889999999999886
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=6.4e-09 Score=84.42 Aligned_cols=116 Identities=27% Similarity=0.312 Sum_probs=56.3
Q ss_pred ccceeccCCCccccccccccccccCCC-CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Chhh
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPF-EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPY 147 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 147 (199)
++.|+++.|.+...+.. .....+..+ ++|+.|++++|.+++.........+..+++|++|++++|.+++. ++..
T Consensus 110 L~~L~ls~~~~~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLR-LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHH-HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 45556666555432211 111223344 56666666666666321111111344555666666666666532 2223
Q ss_pred hcCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 148 LNTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 148 ~~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+..+++|+.|++++|.+++. ++. .+..+++|++|++++|.++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEecCCCcCc
Confidence 34445666666666665531 111 3445556666666666655
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=3e-09 Score=87.18 Aligned_cols=93 Identities=27% Similarity=0.315 Sum_probs=82.7
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
...|..+++|+.|+|++|+++++-+. +|.++..+++|.|..|++.......|.++..|++|+|.+|+|+...| ..
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GA 341 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-cc
Confidence 44588999999999999999998888 99999999999999999986666778999999999999999998444 58
Q ss_pred ccCCCCCCEEeCcCCccC
Q 045715 173 LAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l~ 190 (199)
|..+.+|..|+|-.|.+.
T Consensus 342 F~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccccceeeeeehccCccc
Confidence 999999999999999874
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=8.2e-09 Score=83.78 Aligned_cols=38 Identities=37% Similarity=0.388 Sum_probs=17.1
Q ss_pred CCCCEEecCCCcCCC----ccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEG----SRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+.|+.|++++|.++. .+.. .+..+++|+.+++++|.++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCCCc
Confidence 445555555555441 1111 2333445555555555554
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=3.7e-08 Score=88.69 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=33.7
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
+|+.|++++|.++. +|..+. ++|+.|++++|+++. +|. .+ .++|+.|+|++|+|+ .+|.
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~-~l--p~~L~~LdLs~N~Lt--~LP~ 384 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPE-TL--PPTITTLDVSRNALT--NLPE 384 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CCh-hh--cCCcCEEECCCCcCC--CCCH
Confidence 45555555555542 333332 466677777777665 554 33 256777777777776 4554
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.62 E-value=6.5e-08 Score=87.11 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 179 (199)
..|+.|++++|.+++ +|. . .++|+.|++++|+++. +|..+ .+|+.|++++|+++. +|. .+.++++|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~----l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~-sl~~L~~L 447 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPV----L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPE-SLIHLSSE 447 (788)
T ss_pred cccceEEecCCcccC-CCC----c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cCh-HHhhccCC
Confidence 357778888888776 553 2 3578888888888874 56432 467889999999986 887 78999999
Q ss_pred CEEeCcCCccCCC
Q 045715 180 EALDLSSNYYIHG 192 (199)
Q Consensus 180 ~~L~Ls~N~l~~~ 192 (199)
+.|+|++|+|++.
T Consensus 448 ~~LdLs~N~Ls~~ 460 (788)
T PRK15387 448 TTVNLEGNPLSER 460 (788)
T ss_pred CeEECCCCCCCch
Confidence 9999999999843
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=8.2e-09 Score=88.11 Aligned_cols=93 Identities=24% Similarity=0.301 Sum_probs=71.2
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
+..++.+.+|..||.+.|.+.. +|. .++.+.+|+.|.+..|++. .+|.++..|+ |..||++.|++.. ||. .
T Consensus 159 p~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~-iPv-~ 229 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY-LPV-D 229 (722)
T ss_pred CcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee-cch-h
Confidence 3344556667777777777766 454 6777888888888888887 5677777554 8899999999988 897 7
Q ss_pred ccCCCCCCEEeCcCCccCCCCcCC
Q 045715 173 LAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
|.+|+.|++|-|.+|.++ +.|+
T Consensus 230 fr~m~~Lq~l~LenNPLq--SPPA 251 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ--SPPA 251 (722)
T ss_pred hhhhhhheeeeeccCCCC--CChH
Confidence 999999999999999998 5453
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.51 E-value=1.3e-07 Score=54.33 Aligned_cols=36 Identities=39% Similarity=0.469 Sum_probs=16.9
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|++|++++|+|+. +|+ .+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCC
Confidence 34455555555544 443 3455555555555555554
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.50 E-value=3.9e-07 Score=82.17 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=34.3
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc-------------CC----CCCCEEeCcCCccCC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA-------------KL----KNLEALDLSSNYYIH 191 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~-------------~l----~~L~~L~Ls~N~l~~ 191 (199)
.|+.|++++|+++ .+|. ..++|+.|+|++|++++ +|. ... .+ .+|+.|+|++|+|+
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls- 355 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA- 355 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCC-CcccccccccccCccccccccccccceEecCCCccC-
Confidence 4555666666665 2333 23567888888888776 543 111 11 25666666666666
Q ss_pred CCcCC
Q 045715 192 GSLEG 196 (199)
Q Consensus 192 ~~ip~ 196 (199)
.+|.
T Consensus 356 -~LP~ 359 (788)
T PRK15387 356 -SLPT 359 (788)
T ss_pred -CCCC
Confidence 6664
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.47 E-value=8.6e-07 Score=83.95 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=59.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|++++|.+.. + +..+..+++|+.|+|+++.....+| .+..+++|+.|+|++|..-..+|..++.+
T Consensus 612 ~L~~L~L~~s~l~~-----L-~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEK-----L-WDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCccccc-----c-ccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhcc
Confidence 44556666665543 1 2234556677777777655434344 45666677777777665545666666777
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N 187 (199)
++|+.|++++|.....+|. .+ ++++|+.|++++|
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCC
Confidence 7777777776543333554 22 4555555555554
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=1.1e-06 Score=83.35 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=58.6
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.++.|++++|.... ..|..+.++++|+.|++++|..-+.+|. .+ .+++|+.|++++|..-..+|.. .
T Consensus 779 sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 779 SLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred cchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---c
Confidence 34555555554322 1144566777777777777654444554 33 4566666666665433233322 2
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC-CccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS-NYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~-N~l~ 190 (199)
++|+.|+|++|.++. +|. .+..+++|+.|+|++ |++.
T Consensus 846 ~nL~~L~Ls~n~i~~-iP~-si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 846 TNISDLNLSRTGIEE-VPW-WIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred cccCEeECCCCCCcc-ChH-HHhcCCCCCEEECCCCCCcC
Confidence 456666666666665 665 566666777776665 4444
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=3.6e-07 Score=52.50 Aligned_cols=37 Identities=41% Similarity=0.610 Sum_probs=21.6
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
+|++|++++|+++ .+|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4566666666666 345456666666666666666655
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=3e-08 Score=70.57 Aligned_cols=85 Identities=28% Similarity=0.421 Sum_probs=47.5
Q ss_pred CCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715 98 PFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 176 (199)
...+|+..+|++|.+.. +|. .| ..++.++.|+|++|.++ .+|.++..++.|+.|+++.|.+.. .|. .+..+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-vi~~L 122 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-VIAPL 122 (177)
T ss_pred CCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-HHHHH
Confidence 34455555666666655 333 33 23345566666666665 455556666666666666666655 443 45555
Q ss_pred CCCCEEeCcCCccC
Q 045715 177 KNLEALDLSSNYYI 190 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (199)
.+|-.|+...|.+.
T Consensus 123 ~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 123 IKLDMLDSPENARA 136 (177)
T ss_pred HhHHHhcCCCCccc
Confidence 56666666555554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.36 E-value=3.1e-08 Score=84.70 Aligned_cols=112 Identities=29% Similarity=0.329 Sum_probs=84.5
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
+|..++.+|++.|++.. + +..+..+ -|+.|-+++|+++. +|. .++.+..|..||.+.|.+. .+|..+
T Consensus 119 ~L~~lt~l~ls~NqlS~-----l-p~~lC~l-pLkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql 185 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSH-----L-PDGLCDL-PLKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQL 185 (722)
T ss_pred hhhHHHHhhhccchhhc-----C-ChhhhcC-cceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHh
Confidence 34555777787777765 3 3333433 47788888888876 666 7778888888888888887 577888
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
+.+.+|+.|.+..|++.. +|. .+..| .|..||+|.|+++ .||-.|
T Consensus 186 ~~l~slr~l~vrRn~l~~-lp~-El~~L-pLi~lDfScNkis--~iPv~f 230 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLED-LPE-ELCSL-PLIRLDFSCNKIS--YLPVDF 230 (722)
T ss_pred hhHHHHHHHHHhhhhhhh-CCH-HHhCC-ceeeeecccCcee--ecchhh
Confidence 888888888888888888 787 56654 4888999999998 777654
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.5e-08 Score=88.86 Aligned_cols=101 Identities=30% Similarity=0.409 Sum_probs=67.5
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh-hcCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLT 152 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~ 152 (199)
.+.+.++|.+.. + ...+.-++.|+.|||+.|+++... .+..++.|++|||++|.++ .+|.. ..++.
T Consensus 167 ~~a~fsyN~L~~-----m-D~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 167 ATASFSYNRLVL-----M-DESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred hhhhcchhhHHh-----H-HHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhhh
Confidence 445556666654 1 334455677888888888887642 5677788888888888887 44432 22333
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
|+.|.+++|.++. +- .+.++.+|+.||+++|-|.+
T Consensus 234 -L~~L~lrnN~l~t-L~--gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTT-LR--GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred -heeeeecccHHHh-hh--hHHhhhhhhccchhHhhhhc
Confidence 7888888888776 32 46777888888888887764
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=4.1e-07 Score=76.40 Aligned_cols=85 Identities=34% Similarity=0.463 Sum_probs=47.7
Q ss_pred CCCCCcEEECCCCccCccccccchhhccCCC-CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715 98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLR-QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 176 (199)
.++.++.|++.+|.++. ++. ....+. +|+.|++++|++. .+|..+..++.|+.|+++.|+++. +|. ....+
T Consensus 114 ~~~~l~~L~l~~n~i~~-i~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~~~~ 185 (394)
T COG4886 114 ELTNLTSLDLDNNNITD-IPP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LLSNL 185 (394)
T ss_pred cccceeEEecCCccccc-Ccc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hhhhh
Confidence 34556666666666665 332 344442 5666666666665 344445566666666666666665 554 33355
Q ss_pred CCCCEEeCcCCccC
Q 045715 177 KNLEALDLSSNYYI 190 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (199)
+.|+.|++++|+++
T Consensus 186 ~~L~~L~ls~N~i~ 199 (394)
T COG4886 186 SNLNNLDLSGNKIS 199 (394)
T ss_pred hhhhheeccCCccc
Confidence 66666666666665
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=2.4e-08 Score=87.52 Aligned_cols=107 Identities=28% Similarity=0.301 Sum_probs=83.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
++.++.|||+.|++.. ...+..+++|++|||++|.+.. +|.. .-.++ .|+.|.+.+|.++. ...+.
T Consensus 186 l~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc-~L~~L~lrnN~l~t--L~gie 251 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGC-KLQLLNLRNNALTT--LRGIE 251 (1096)
T ss_pred HHHhhhhccchhhhhh-------hHHHHhcccccccccccchhcc-cccc---chhhh-hheeeeecccHHHh--hhhHH
Confidence 4567899999999986 3467789999999999999987 5531 12233 39999999999973 33467
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++.+|+.|||++|-|.+.-....++.+..|+.|.|.+|.+.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88999999999999987333334677889999999999885
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.21 E-value=2.8e-06 Score=64.26 Aligned_cols=105 Identities=27% Similarity=0.229 Sum_probs=78.3
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~ 148 (199)
+.....+||+.|.+.. ...|..++.|..|.|.+|+|+.+.|. --..++.|+.|.|.+|.+... ....+
T Consensus 41 ~d~~d~iDLtdNdl~~-------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pL 109 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPL 109 (233)
T ss_pred ccccceecccccchhh-------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchh
Confidence 3444677888888865 55677889999999999999987765 444567899999999998621 12346
Q ss_pred cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSS 186 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~ 186 (199)
..+|+|++|.+-+|.++. ... -.+..+++|++||...
T Consensus 110 a~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 788999999999998876 221 1366789999998764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=4.7e-07 Score=76.74 Aligned_cols=85 Identities=38% Similarity=0.408 Sum_probs=56.1
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
+..+++|+.|++.+|.+..... .+..+++|++|++++|.|+... .+..++.|+.|++++|.|+. +. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~--~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-IS--GLES 160 (414)
T ss_pred cccccceeeeeccccchhhccc-----chhhhhcchheecccccccccc--chhhccchhhheeccCcchh-cc--CCcc
Confidence 4566777777777777776321 2566777777777777776332 24555667777777777766 44 3556
Q ss_pred CCCCCEEeCcCCccC
Q 045715 176 LKNLEALDLSSNYYI 190 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~ 190 (199)
++.|+.+++++|+++
T Consensus 161 l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIV 175 (414)
T ss_pred chhhhcccCCcchhh
Confidence 777777777777776
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=1e-06 Score=74.01 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=43.8
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|+++.|.+.. + +..+..++.|+.|++++|+++. +|. ....++.|+.|++++|+++ .+|......
T Consensus 141 nL~~L~l~~N~i~~-----l-~~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~ 208 (394)
T COG4886 141 NLKELDLSDNKIES-----L-PSPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELL 208 (394)
T ss_pred hcccccccccchhh-----h-hhhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhh
Confidence 56778888887765 1 1344566777777777777766 333 3335555666666666655 334332223
Q ss_pred CCCCEEecCCC
Q 045715 152 TSLTTLNLRYN 162 (199)
Q Consensus 152 ~~L~~L~Ls~N 162 (199)
..|+++.+++|
T Consensus 209 ~~L~~l~~~~N 219 (394)
T COG4886 209 SALEELDLSNN 219 (394)
T ss_pred hhhhhhhhcCC
Confidence 33444444444
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=1e-07 Score=67.94 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=79.5
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.++|+.|.+.. +++..-..++.++.|+|++|.++. +|. ++..++.|+.|++++|.+. ..|..+..+.+
T Consensus 56 ~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 56 TKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred EEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 445667777764 445545567899999999999998 788 8999999999999999998 67777777999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
|..|+..+|.+.. +|-+ +-.-...-..++.++.+.+
T Consensus 125 l~~Lds~~na~~e-id~d-l~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 125 LDMLDSPENARAE-IDVD-LFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred HHHhcCCCCcccc-CcHH-HhccccHHHHHhcCCcccc
Confidence 9999999999876 7764 3222333334456666653
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=4.7e-07 Score=76.73 Aligned_cols=104 Identities=33% Similarity=0.395 Sum_probs=81.1
Q ss_pred cCCccceeccCCCccccccccccccc-cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSL-FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
+.++..+++..|.+.. ... +..+++|++|++++|.|+.+. .+..++.|+.|++++|.++. ...+
T Consensus 94 ~~~l~~l~l~~n~i~~-------i~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~--~~~~ 158 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-------IENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD--ISGL 158 (414)
T ss_pred ccceeeeeccccchhh-------cccchhhhhcchheecccccccccc------chhhccchhhheeccCcchh--ccCC
Confidence 3455677888888865 222 567899999999999999854 56777889999999999973 3445
Q ss_pred cCCCCCCEEecCCCcCCCccchhh-ccCCCCCCEEeCcCCccC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~-~~~l~~L~~L~Ls~N~l~ 190 (199)
..++.|+.+++++|.+.. +.. . ...+.+|+.+.++.|.+.
T Consensus 159 ~~l~~L~~l~l~~n~i~~-ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVD-IEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccchhhhcccCCcchhhh-hhh-hhhhhccchHHHhccCCchh
Confidence 668889999999999987 554 1 477888899999999886
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.1e-07 Score=75.10 Aligned_cols=88 Identities=30% Similarity=0.290 Sum_probs=41.2
Q ss_pred CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh--hhhcCCCCCCEEecCCCcCCCc-cchh---
Q 045715 98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL--PYLNTLTSLTTLNLRYNSIEGS-RTKQ--- 171 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-ip~~--- 171 (199)
.+|.|+.|+|..|........ ...-+..|+.|||++|++-. .+ ...+.++.|..|+++.+.+... +|..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccch
Confidence 345555555555532221111 23334556666666665531 12 2344555555555555555441 1110
Q ss_pred -hccCCCCCCEEeCcCCccC
Q 045715 172 -GLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 172 -~~~~l~~L~~L~Ls~N~l~ 190 (199)
....+++|+.|+++.|++.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhcccccceeeecccCccc
Confidence 0234555666666666553
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.09 E-value=1.8e-06 Score=79.19 Aligned_cols=107 Identities=25% Similarity=0.256 Sum_probs=82.7
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
+++|-+..|.. ....+....|..++.|++|||++|.--+.+|. .++.|-+|++|++++..++ .+|..++++.
T Consensus 547 L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk 618 (889)
T KOG4658|consen 547 LRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLK 618 (889)
T ss_pred cceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence 44555555542 01114455688899999999999887777898 9999999999999999998 7899999999
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 188 (199)
+|.+|++..+.....+|. ....+.+|++|.+-.-.
T Consensus 619 ~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 999999998876554543 56669999999886543
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.4e-06 Score=71.17 Aligned_cols=111 Identities=24% Similarity=0.293 Sum_probs=76.5
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhh---
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPY--- 147 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~--- 147 (199)
++..|+|.+|.... +.......+..|+.|||++|++-. .+. ....+.++.|+.|+++.+.+... .|+.
T Consensus 223 sl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhcccccc-----eecchhhhhhHHhhccccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccch
Confidence 34556666664221 122333457889999999999876 331 01577899999999999999643 2222
Q ss_pred --hcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 148 --LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 148 --~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
...+++|++|+++.|++...-.-..+..+++|++|.+..|.|+
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 3568999999999999976222224556788899998899887
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=2.4e-06 Score=69.26 Aligned_cols=118 Identities=25% Similarity=0.204 Sum_probs=87.2
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh--
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-- 148 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-- 148 (199)
+.++.+.+++|.|...|. .+....|..+++|+.|||..|-++..-.......+..+++|++|+++++.+...-...|
T Consensus 185 ~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 345678888888887776 24456678899999999999998753221111267788899999999999975444433
Q ss_pred ---cCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 149 ---NTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 149 ---~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
...|+|++|.+.+|.|+.. +.. .+...+.|..|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~-~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAA-CMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHH-HHhcchhhHHhcCCccccc
Confidence 2478999999999999852 111 3566889999999999993
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.5e-05 Score=60.38 Aligned_cols=86 Identities=28% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCC
Q 045715 99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN 178 (199)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 178 (199)
+.+...+||++|.+-. ++ .|..++.|..|.|++|+|+..-|..-.-++.|..|.|.+|.|...-..+.+..+++
T Consensus 41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 4467889999999886 33 78899999999999999997667665677899999999999986222234778999
Q ss_pred CCEEeCcCCccC
Q 045715 179 LEALDLSSNYYI 190 (199)
Q Consensus 179 L~~L~Ls~N~l~ 190 (199)
|+.|.+-+|+++
T Consensus 115 L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 115 LEYLTLLGNPVE 126 (233)
T ss_pred cceeeecCCchh
Confidence 999999999887
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.71 E-value=2.2e-05 Score=72.24 Aligned_cols=85 Identities=28% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCCcEEECCCCc--cCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715 99 FEELQRLDLPMNW--FTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176 (199)
Q Consensus 99 l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 176 (199)
.+.|+.|-+..|. +...... .|..++.|++|||++|.=-+.+|..++.+-+|++|+|+...+.. +|. .+.++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHH
Confidence 4478888888886 4443333 58889999999999987777899999999999999999999997 998 89999
Q ss_pred CCCCEEeCcCCcc
Q 045715 177 KNLEALDLSSNYY 189 (199)
Q Consensus 177 ~~L~~L~Ls~N~l 189 (199)
..|.+|++..+.-
T Consensus 618 k~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 618 KKLIYLNLEVTGR 630 (889)
T ss_pred Hhhheeccccccc
Confidence 9999999998764
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=3.1e-05 Score=60.61 Aligned_cols=85 Identities=29% Similarity=0.366 Sum_probs=56.8
Q ss_pred ccccCCCCCCcEEECCCC--ccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh---hcCCCCCCEEecCCCcCCCc
Q 045715 93 MSLFHPFEELQRLDLPMN--WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY---LNTLTSLTTLNLRYNSIEGS 167 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~ 167 (199)
...|..+++|+.|.+|.| ++.+..+. ....+++|++|+++.|++.. ++. +..+.+|..|++.++..+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~- 130 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN- 130 (260)
T ss_pred cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-
Confidence 445667788899999998 55554444 44556889999999998862 333 3456667788888877665
Q ss_pred cc---hhhccCCCCCCEEeC
Q 045715 168 RT---KQGLAKLKNLEALDL 184 (199)
Q Consensus 168 ip---~~~~~~l~~L~~L~L 184 (199)
+- ...|.-+++|++|+-
T Consensus 131 l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 131 LDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cccHHHHHHHHhhhhccccc
Confidence 21 113556777777653
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=5.9e-05 Score=61.39 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=53.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcccccc---------chhhccCCCCCCEEEcCCCCCCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR---------AYDSFGSLRQLKMLNLGNNDFND 142 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---------~~~~~~~l~~L~~L~Ls~N~l~~ 142 (199)
.++.||||.|.+...+...+ -..+.....|++|+|.+|.+.-.-... -......-+.|+++..++|++..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 44677777777776554211 223344566666666666654211110 00012233445555555555532
Q ss_pred CCh----hhhcCCCCCCEEecCCCcCCCc---cchhhccCCCCCCEEeCcCCccC
Q 045715 143 NIL----PYLNTLTSLTTLNLRYNSIEGS---RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 143 ~~p----~~~~~l~~L~~L~Ls~N~l~~~---ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.-. ..|...+.|+.+.++.|.|... .-...+..+++|+.|||.+|-|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 111 1233444555555555544320 00112444555555555555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00022 Score=64.16 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=68.3
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~ 148 (199)
|+.++.|.+++-.+....+ .....++++|..||+|+..++.. . .++.+++|+.|.+.+=.+.. ..-..+
T Consensus 147 LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl--~----GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNL--S----GISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCc--H----HHhccccHHHHhccCCCCCchhhHHHH
Confidence 4444555544433332111 23345788888888888888874 2 67778888888777666642 233456
Q ss_pred cCCCCCCEEecCCCcCCCc--cchh---hccCCCCCCEEeCcCCccC
Q 045715 149 NTLTSLTTLNLRYNSIEGS--RTKQ---GLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~--ip~~---~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+|++|+.||+|....... +... .-..+|.|+.||.|+..++
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6788888888887665541 1110 1235788888888876554
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.37 E-value=0.00014 Score=57.06 Aligned_cols=84 Identities=30% Similarity=0.346 Sum_probs=48.2
Q ss_pred CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC--CCCCCChhhhcCCCCCCEEecCCCcCCC--ccchhhcc
Q 045715 99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--DFNDNILPYLNTLTSLTTLNLRYNSIEG--SRTKQGLA 174 (199)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~ 174 (199)
+..|+.|.+.+..++... .|..|++|+.|.++.| ++++.++...-.+|+|++|+|+.|+|.. .++ .+.
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~ 113 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK 113 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence 444555555555555422 4556667777777777 4444444444455777777777777653 122 245
Q ss_pred CCCCCCEEeCcCCccC
Q 045715 175 KLKNLEALDLSSNYYI 190 (199)
Q Consensus 175 ~l~~L~~L~Ls~N~l~ 190 (199)
.+.+|..|++..|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 5666666777666554
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1e-05 Score=64.25 Aligned_cols=84 Identities=32% Similarity=0.343 Sum_probs=63.6
Q ss_pred cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhhcCCCCCCEEecCCCcCCCccchh-
Q 045715 94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYLNTLTSLTTLNLRYNSIEGSRTKQ- 171 (199)
Q Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ip~~- 171 (199)
.....++.|++|.||-|+|+... .+..++.|++|+|..|.|.... ...+.++|+|+.|.|..|.-.+.-+..
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY 108 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY 108 (388)
T ss_pred HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence 34567899999999999998754 5778889999999999997322 234678999999999999888744431
Q ss_pred ---hccCCCCCCEEe
Q 045715 172 ---GLAKLKNLEALD 183 (199)
Q Consensus 172 ---~~~~l~~L~~L~ 183 (199)
.+..||+|+.||
T Consensus 109 R~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 109 RRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHcccchhcc
Confidence 255678887775
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00012 Score=58.70 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=43.8
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh-hhcCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLT 152 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~ 152 (199)
+.+||..|.++.+... ...+.++|.|+.|+|+.|.+...+.. .-..+.+|+.|-|.+..+...... .+..+|
T Consensus 74 ~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 4556666666543321 33445666666666666666654432 112445666666666665433322 334556
Q ss_pred CCCEEecCCCc
Q 045715 153 SLTTLNLRYNS 163 (199)
Q Consensus 153 ~L~~L~Ls~N~ 163 (199)
.++.|.++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 66666666553
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.20 E-value=0.0011 Score=46.47 Aligned_cols=97 Identities=21% Similarity=0.360 Sum_probs=56.4
Q ss_pred ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715 91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK 170 (199)
Q Consensus 91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 170 (199)
+....|...++|+.+.+..+ +...... .|..++.|+.+.+.. .+.......|..+++|+.+.+..+ +.. ++.
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~-i~~ 97 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITE-IGS 97 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BE-EHT
T ss_pred eChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc-ccE-Ech
Confidence 45667888888999998875 6664444 788888899999976 443233456777889999999776 554 666
Q ss_pred hhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715 171 QGLAKLKNLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 171 ~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
..|.+. .|+.+.+.. .++ .++...|
T Consensus 98 ~~f~~~-~l~~i~~~~-~~~--~i~~~~F 122 (129)
T PF13306_consen 98 SSFSNC-NLKEINIPS-NIT--KIEENAF 122 (129)
T ss_dssp TTTTT--T--EEE-TT-B-S--S----GG
T ss_pred hhhcCC-CceEEEECC-Ccc--EECCccc
Confidence 677777 889888876 444 3454443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00013 Score=58.54 Aligned_cols=91 Identities=22% Similarity=0.266 Sum_probs=66.0
Q ss_pred CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCC
Q 045715 98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK 177 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 177 (199)
..+.++.+||.+|.|+.-. +.+.-+.+|+.|+.|+|+.|++...+...-..+.+|++|-|.+..+.-.--...+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3567899999999998632 11225678999999999999997544332245678999999887776433333567888
Q ss_pred CCCEEeCcCCccC
Q 045715 178 NLEALDLSSNYYI 190 (199)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (199)
.++.|++|.|.+.
T Consensus 147 ~vtelHmS~N~~r 159 (418)
T KOG2982|consen 147 KVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhccchhh
Confidence 8999999998554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.00083 Score=47.03 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=61.2
Q ss_pred ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715 91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK 170 (199)
Q Consensus 91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 170 (199)
+....|...++|+.+.+.. .+..+-.. .|..+++|+.+.+..+ +...-...|..+++|+.+.+.+ .+.. ++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-T
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccc
Confidence 3456788888999999985 56765555 8889989999999886 6644455788888999999976 5544 566
Q ss_pred hhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 171 QGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 171 ~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
..|..+++|+.+.+..+ ++ .++...
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~--~i~~~~ 99 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-IT--EIGSSS 99 (129)
T ss_dssp TTTTT-TTECEEEETTT--B--EEHTTT
T ss_pred ccccccccccccccCcc-cc--EEchhh
Confidence 67888999999999776 54 344433
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.00043 Score=62.36 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=64.8
Q ss_pred CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715 97 HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176 (199)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 176 (199)
..||.|+.|.+++-.+...- +...+..+++|..||+|+.+++.. ..++.+++|+.|.+.+=.+...---..+.+|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 35788888888887665421 112566788999999999998843 5678889999998887666642112247789
Q ss_pred CCCCEEeCcCCccC
Q 045715 177 KNLEALDLSSNYYI 190 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (199)
++|++||+|.....
T Consensus 220 ~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 220 KKLRVLDISRDKNN 233 (699)
T ss_pred cCCCeeeccccccc
Confidence 99999999987665
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=9.5e-05 Score=58.84 Aligned_cols=87 Identities=26% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCC
Q 045715 98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK 177 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 177 (199)
.+...+.|++-++.++++. ....|+.|++|.|+-|+++. ...+..+++|+.|+|..|.|...-....+.+++
T Consensus 17 dl~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 4567788898899988742 56789999999999999984 345788999999999999998732333578999
Q ss_pred CCCEEeCcCCccCCC
Q 045715 178 NLEALDLSSNYYIHG 192 (199)
Q Consensus 178 ~L~~L~Ls~N~l~~~ 192 (199)
+|+.|-|..|.=.+.
T Consensus 89 sLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGE 103 (388)
T ss_pred hhhhHhhccCCcccc
Confidence 999999999976643
No 62
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.53 E-value=4e-05 Score=59.48 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=36.6
Q ss_pred CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCC
Q 045715 99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN 178 (199)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 178 (199)
+.+.+.||++.|++.. ... .|+-++.|.+|+++.|++. ..|..++.+..+..+++..|..+. .|. .++..+.
T Consensus 41 ~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~-s~~k~~~ 112 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK-SQKKEPH 112 (326)
T ss_pred cceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-cccccCC
Confidence 3444444444444433 122 3444444444444444444 334444444444444444444443 443 4444444
Q ss_pred CCEEeCcCCcc
Q 045715 179 LEALDLSSNYY 189 (199)
Q Consensus 179 L~~L~Ls~N~l 189 (199)
++.+++-.|.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 44444444443
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.37 E-value=0.0025 Score=31.84 Aligned_cols=20 Identities=45% Similarity=0.433 Sum_probs=11.2
Q ss_pred CCCCEEeCcCCccCCCCcCCCC
Q 045715 177 KNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~--~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS--SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC--cCCHHH
Confidence 45566666666665 445443
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.37 E-value=0.0025 Score=31.84 Aligned_cols=20 Identities=45% Similarity=0.433 Sum_probs=11.2
Q ss_pred CCCCEEeCcCCccCCCCcCCCC
Q 045715 177 KNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
++|+.|+|++|+|+ .+|...
T Consensus 2 ~~L~~L~L~~N~l~--~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS--SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC--cCCHHH
Confidence 45566666666665 445443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.31 E-value=0.016 Score=49.04 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=7.3
Q ss_pred CCccceeccCCCcc
Q 045715 71 NYTTKFNYSYNSVY 84 (199)
Q Consensus 71 ~~~~~L~ls~N~~~ 84 (199)
..++.|+++++.+.
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 44455666655443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.15 E-value=0.0015 Score=31.44 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.4
Q ss_pred CEEecCCCcCC
Q 045715 155 TTLNLRYNSIE 165 (199)
Q Consensus 155 ~~L~Ls~N~l~ 165 (199)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.0031 Score=30.28 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=8.9
Q ss_pred CcEEECCCCccCccccc
Q 045715 102 LQRLDLPMNWFTGIYEN 118 (199)
Q Consensus 102 L~~L~Ls~N~l~~~~p~ 118 (199)
|++|||++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 555666666655 3554
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.97 E-value=0.015 Score=46.44 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=26.3
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN 141 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 141 (199)
+..+++|+..+||.|.+....|...-+.++.-+.|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3455666666666666665555422233445556666666666653
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.00038 Score=56.01 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=65.4
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC-CCCCCChh-hhcC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDNILP-YLNT 150 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~ 150 (199)
++.||||...++...+ ...+..+.+|+.|.|.++++.+.+.. .+..-..|+.|+|+.+ .|+..-.. -+.+
T Consensus 187 lq~lDLS~s~it~stl----~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTL----HGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHH----HHHHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHh
Confidence 4778888877776433 23455667778888888887776655 6666666777776654 33321111 2455
Q ss_pred CCCCCEEecCCCcCCCcc----------------------------chhhccCCCCCCEEeCcCCc
Q 045715 151 LTSLTTLNLRYNSIEGSR----------------------------TKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~i----------------------------p~~~~~~l~~L~~L~Ls~N~ 188 (199)
++.|..|+|+.+.+.... -......+++|.+||||+|.
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 666666666665443310 01123467888899998753
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.69 E-value=0.014 Score=46.73 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc---ccccc---chhhccCCCCCCEEEcCCCCCCCCC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG---IYENR---AYDSFGSLRQLKMLNLGNNDFNDNI 144 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~---~~p~~---~~~~~~~l~~L~~L~Ls~N~l~~~~ 144 (199)
..++.++||+|.|.......+ ...+.+-.+|+..+++.-.... .++.. ....+.++++|+..+||+|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 344667777777765322111 2344556778888777643221 11110 0125678899999999999998777
Q ss_pred hhh----hcCCCCCCEEecCCCcCCCccchhh-------------ccCCCCCCEEeCcCCccCCCC
Q 045715 145 LPY----LNTLTSLTTLNLRYNSIEGSRTKQG-------------LAKLKNLEALDLSSNYYIHGS 193 (199)
Q Consensus 145 p~~----~~~l~~L~~L~Ls~N~l~~~ip~~~-------------~~~l~~L~~L~Ls~N~l~~~~ 193 (199)
|.. ++.-+.|.+|.|++|.+.- +.... ..+-|.|+.+....|++..++
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 764 4566789999999998742 32222 335688999999999987554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.68 E-value=0.007 Score=27.12 Aligned_cols=13 Identities=54% Similarity=0.667 Sum_probs=5.9
Q ss_pred CCCEEeCcCCccC
Q 045715 178 NLEALDLSSNYYI 190 (199)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (199)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666655
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.56 E-value=0.054 Score=45.93 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=18.7
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N 187 (199)
+|++|+++++.... +|. .+- .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i~-LP~-~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII-LPE-KLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc-Ccc-ccc--ccCcEEEeccc
Confidence 57777777766543 343 222 46777777665
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.93 E-value=0.029 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=13.2
Q ss_pred CCCCEEecCCCcCCCccchhhc
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGL 173 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~ 173 (199)
++|+.|+|++|+|+. +|.+.|
T Consensus 2 ~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCc-CCHHHc
Confidence 456777777777766 665433
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.93 E-value=0.029 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=13.2
Q ss_pred CCCCEEecCCCcCCCccchhhc
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGL 173 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~ 173 (199)
++|+.|+|++|+|+. +|.+.|
T Consensus 2 ~~L~~L~L~~N~l~~-lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSS-LPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCc-CCHHHc
Confidence 456777777777766 665433
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.52 E-value=0.0014 Score=51.02 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=54.9
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
|.-++.|..|+++.|++.. .|. .+..+..+..+++..|.++ ..|.+++..+.++++++..|.+..
T Consensus 61 ~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred hHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 4556788889999999887 677 7888888899999999988 678889999999999999888754
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.0047 Score=49.90 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=66.6
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCc-CCCccchhhccCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNS-IEGSRTKQGLAKLKN 178 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~ 178 (199)
+.|++||||+..++...-. --+..+.+|+.|.|.++++...+...++.-..|+.|+|+... ++..--.-.+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 4599999999888753211 145678899999999999998888889988999999998754 443111113678899
Q ss_pred CCEEeCcCCccC
Q 045715 179 LEALDLSSNYYI 190 (199)
Q Consensus 179 L~~L~Ls~N~l~ 190 (199)
|..|+|+-+-++
T Consensus 262 L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 262 LDELNLSWCFLF 273 (419)
T ss_pred HhhcCchHhhcc
Confidence 999999887665
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.33 E-value=0.28 Score=24.52 Aligned_cols=13 Identities=62% Similarity=0.652 Sum_probs=6.4
Q ss_pred CCCEEeCcCCccC
Q 045715 178 NLEALDLSSNYYI 190 (199)
Q Consensus 178 ~L~~L~Ls~N~l~ 190 (199)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555544
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.07 E-value=0.22 Score=24.87 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=11.1
Q ss_pred CCCEEeCcCCccCCCCcCC
Q 045715 178 NLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 178 ~L~~L~Ls~N~l~~~~ip~ 196 (199)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt--~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT--SLPE 19 (26)
T ss_pred ccceeecCCCccc--cCcc
Confidence 5666777777776 5554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=0.063 Score=41.01 Aligned_cols=80 Identities=29% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC-CCChhhhc-CCCCCCEEecCCCc-CCCccchhhccCCC
Q 045715 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN-DNILPYLN-TLTSLTTLNLRYNS-IEGSRTKQGLAKLK 177 (199)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~ 177 (199)
.++.+|-++..|... +++.+..++.++.|.+.++.-- ....+-++ -.++|+.|+|++|. |+. -....+..++
T Consensus 102 ~IeaVDAsds~I~~e----Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE----GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHH----HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhh
Confidence 455666666655542 2225555566666665555432 11111222 23566666666554 443 2222345555
Q ss_pred CCCEEeCc
Q 045715 178 NLEALDLS 185 (199)
Q Consensus 178 ~L~~L~Ls 185 (199)
+|+.|.+.
T Consensus 177 nLr~L~l~ 184 (221)
T KOG3864|consen 177 NLRRLHLY 184 (221)
T ss_pred hhHHHHhc
Confidence 55555544
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.10 E-value=0.26 Score=23.73 Aligned_cols=14 Identities=57% Similarity=0.667 Sum_probs=8.8
Q ss_pred CCCCEEeCcCCccC
Q 045715 177 KNLEALDLSSNYYI 190 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (199)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777775
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=87.95 E-value=0.5 Score=40.25 Aligned_cols=93 Identities=24% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhhc-CCCCCCEEecCCCc-CCCccchhh
Q 045715 97 HPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYLN-TLTSLTTLNLRYNS-IEGSRTKQG 172 (199)
Q Consensus 97 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~ip~~~ 172 (199)
...+.|+.|+++++ ......+.........+++|+.|++++.. ++...-..+. .+++|+.|.+.++. ++..--...
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45677888888763 11111110000133445778888888777 5544444444 36788888876666 443111113
Q ss_pred ccCCCCCCEEeCcCCcc
Q 045715 173 LAKLKNLEALDLSSNYY 189 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l 189 (199)
...++.|++|+++.+..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 44577788888886543
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.95 E-value=0.59 Score=40.86 Aligned_cols=67 Identities=22% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC--CCCCCChhhhcC--CCCCCEEecCCCcCCCc
Q 045715 97 HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--DFNDNILPYLNT--LTSLTTLNLRYNSIEGS 167 (199)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~ 167 (199)
.+.+.+..+.|++|++.....-. .--...+.|+.|+|++| .+. ...++.. ...|++|.+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhh--HHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 35678888889999887642110 01234578899999998 333 1222222 23478889999988763
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.32 E-value=1.1 Score=22.62 Aligned_cols=14 Identities=43% Similarity=0.422 Sum_probs=10.5
Q ss_pred CCCCEEeCcCCccC
Q 045715 177 KNLEALDLSSNYYI 190 (199)
Q Consensus 177 ~~L~~L~Ls~N~l~ 190 (199)
++|+.|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.20 E-value=0.037 Score=47.96 Aligned_cols=118 Identities=30% Similarity=0.330 Sum_probs=60.3
Q ss_pred CccceeccCCCcccccccccccc---ccCCCCCCcEEECCCCccCccccccchhhccCCCC-CCEEEcCCCCCCCCC---
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMS---LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQ-LKMLNLGNNDFNDNI--- 144 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~-L~~L~Ls~N~l~~~~--- 144 (199)
.++.++++.|.+...|...+... .+....++++|.++++.++...-...-..+...++ +..|++..|++....
T Consensus 173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~ 252 (478)
T KOG4308|consen 173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK 252 (478)
T ss_pred chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence 34566666666654333222111 12245667777777777663211000012333444 555777777765321
Q ss_pred -hhhhcCC-CCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 145 -LPYLNTL-TSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 145 -p~~~~~l-~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+.+..+ +.++.++++.|.|+.. +.. .+..++.++.+.++.|.+.
T Consensus 253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~-~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 253 LLPCLSVLSETLRVLDLSRNSITEKGVRDLAE-VLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhcccchhhhhhhhhcCCccccchHHHHH-HHhhhHHHHHhhcccCccc
Confidence 1223334 4567777777777652 121 3445567777777777665
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.22 E-value=1.4 Score=38.56 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCCCCCEEEcCCCCCCCC--ChhhhcCCCCCCEEecCCC--cCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 126 SLRQLKMLNLGNNDFNDN--ILPYLNTLTSLTTLNLRYN--SIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 126 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N--~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+.+.+..++|++|++... +...-...|+|..|+|++| .+........++ ...|+.|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 456788899999999622 1112235688999999999 554411111222 335788999999886
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.14 E-value=3.2 Score=35.30 Aligned_cols=65 Identities=25% Similarity=0.183 Sum_probs=39.3
Q ss_pred cCCCCCCcEEECCCCc-cCccccccchhhcc-CCCCCCEEEcCCCC-CCCCChhh-hcCCCCCCEEecCCCcC
Q 045715 96 FHPFEELQRLDLPMNW-FTGIYENRAYDSFG-SLRQLKMLNLGNND-FNDNILPY-LNTLTSLTTLNLRYNSI 164 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~N~l 164 (199)
...+++|+.|++++.. +++..-. .+. .+++|+.|.+.++. ++...-.. ...++.|++|+++.+..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~----~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLS----ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHH----HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3445778888888777 4442211 232 26778888877666 45333333 34577788888886654
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.90 E-value=0.16 Score=44.18 Aligned_cols=116 Identities=20% Similarity=0.163 Sum_probs=65.0
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCC-CCCCEEEcCCCCCCCC----Chhh
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL-RQLKMLNLGNNDFNDN----ILPY 147 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~ 147 (199)
+..+.|.+|.+...+.. .....+...++|+.|++++|.+.+.--......+... ..+++|++..+.+++. +...
T Consensus 89 l~~L~L~~~~l~~~~~~-~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAE-ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHH-HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 45677777777765443 2244566778888888888888743111001122222 4456666666666533 2233
Q ss_pred hcCCCCCCEEecCCCcCCC----ccchhhc----cCCCCCCEEeCcCCccC
Q 045715 148 LNTLTSLTTLNLRYNSIEG----SRTKQGL----AKLKNLEALDLSSNYYI 190 (199)
Q Consensus 148 ~~~l~~L~~L~Ls~N~l~~----~ip~~~~----~~l~~L~~L~Ls~N~l~ 190 (199)
+.....++.++++.|.+.. .++. .+ ....++++|.++++.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcC
Confidence 4445667777777776632 0111 22 23556777777776665
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.40 E-value=7.6 Score=40.59 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=28.0
Q ss_pred ECCCCccCccccccchhhccCCCCCCEEEcCCCCCC
Q 045715 106 DLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN 141 (199)
Q Consensus 106 ~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 141 (199)
||++|+|+.+.+. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g----~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG----ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH----HhccCCCceEEEeeCCccc
Confidence 6899999986666 8888999999999999985
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.90 E-value=4.6 Score=31.11 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc-CCCCCCEEeCcCCc-cCC
Q 045715 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA-KLKNLEALDLSSNY-YIH 191 (199)
Q Consensus 128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~-~l~~L~~L~Ls~N~-l~~ 191 (199)
..++.++-++..+.+.--..+..+++++.|.+.++.--+.--.+.++ -.++|+.|++++|. ||+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 35788999999998777778889999999999887644322211233 35799999999764 653
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.45 E-value=9.5 Score=39.94 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=28.6
Q ss_pred eccCCCccccccccccccccCCCCCCcEEECCCCccC
Q 045715 77 NYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT 113 (199)
Q Consensus 77 ~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~ 113 (199)
||++|+|.. ++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Lst-----Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST-----IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc-----cChHHhccCCCceEEEeeCCccc
Confidence 688999987 77889999999999999999876
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.38 E-value=24 Score=16.97 Aligned_cols=15 Identities=40% Similarity=0.366 Sum_probs=10.5
Q ss_pred CCCCCEEeCcCCc-cC
Q 045715 176 LKNLEALDLSSNY-YI 190 (199)
Q Consensus 176 l~~L~~L~Ls~N~-l~ 190 (199)
+++|++|+|+++. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3678888888764 54
No 92
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=20.59 E-value=45 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=10.8
Q ss_pred CCCCCCcHHhHHHHHHHHhc
Q 045715 2 HGYKGCLETERTALLEIKSF 21 (199)
Q Consensus 2 ~~~~~~~~~~~~al~~~~~~ 21 (199)
-||++|.|.|. .|-++...
T Consensus 8 QGCsSCPpAD~-~L~~l~~~ 26 (202)
T PF06764_consen 8 QGCSSCPPADR-LLSELAAR 26 (202)
T ss_dssp TT-TT-HHHHH-HHHHHHHH
T ss_pred CCCCCCcHHHH-HHHHhhcC
Confidence 38999999885 34444443
Done!