Query 045715
Match_columns 199
No_of_seqs 293 out of 2715
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-27 1.9E-31 189.6 11.3 162 6-190 2-187 (313)
2 3rgz_A Protein brassinosteroid 99.9 6E-23 2.1E-27 183.8 13.5 53 5-72 7-59 (768)
3 4eco_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 177.7 11.8 173 9-196 29-322 (636)
4 3e6j_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 143.1 13.7 133 46-190 15-148 (229)
5 4ecn_A Leucine-rich repeat pro 99.8 6.9E-21 2.3E-25 172.2 10.7 169 7-196 266-565 (876)
6 4fcg_A Uncharacterized protein 99.8 1.3E-21 4.3E-26 159.1 3.7 169 6-197 23-248 (328)
7 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.7E-24 138.0 13.2 128 50-190 11-141 (220)
8 2o6s_A Variable lymphocyte rec 99.8 4.7E-19 1.6E-23 134.6 13.8 130 50-190 7-137 (208)
9 3m19_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 137.4 11.9 107 74-190 62-168 (251)
10 4g8a_A TOLL-like receptor 4; l 99.8 5.5E-19 1.9E-23 153.4 11.8 133 55-197 35-168 (635)
11 2o6r_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 128.5 12.6 129 50-191 7-138 (177)
12 1w8a_A SLIT protein; signaling 99.8 6.7E-19 2.3E-23 132.6 10.5 131 50-191 8-140 (192)
13 2o6q_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 136.2 13.2 90 96-190 81-170 (270)
14 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-18 9.2E-23 132.0 13.0 130 50-190 11-142 (220)
15 2wfh_A SLIT homolog 2 protein 99.8 6.4E-18 2.2E-22 127.4 11.6 129 50-190 10-139 (193)
16 3m19_A Variable lymphocyte rec 99.7 2.1E-17 7.2E-22 129.1 13.6 107 74-190 86-192 (251)
17 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-17 5.1E-22 127.8 11.8 112 69-190 55-166 (220)
18 2v9t_B SLIT homolog 2 protein 99.7 2.9E-17 1E-21 126.2 12.2 111 70-190 55-165 (220)
19 2xot_A Amphoterin-induced prot 99.7 2.1E-17 7.1E-22 135.8 11.0 130 50-190 18-149 (361)
20 3o6n_A APL1; leucine-rich repe 99.7 1.2E-17 4.1E-22 138.1 8.9 93 93-190 86-178 (390)
21 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.8E-21 127.3 13.8 116 71-199 77-192 (290)
22 2z80_A TOLL-like receptor 2, v 99.7 5.6E-17 1.9E-21 132.5 11.1 133 46-190 26-163 (353)
23 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.9E-21 125.0 13.8 109 72-190 86-194 (272)
24 2o6s_A Variable lymphocyte rec 99.7 2.4E-16 8.2E-21 119.6 13.6 111 70-190 51-161 (208)
25 2o6q_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 124.5 13.7 109 72-190 86-194 (270)
26 3g39_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 116.9 12.2 86 100-190 30-115 (170)
27 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 122.4 12.4 111 70-191 63-173 (229)
28 2z81_A CD282 antigen, TOLL-lik 99.7 9E-17 3.1E-21 138.0 11.6 130 49-190 3-136 (549)
29 3oja_B Anopheles plasmodium-re 99.7 6.1E-17 2.1E-21 141.1 10.3 109 73-191 77-185 (597)
30 3rfs_A Internalin B, repeat mo 99.7 4.3E-16 1.5E-20 123.1 13.6 109 70-190 62-170 (272)
31 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.1E-21 124.8 11.3 109 72-190 53-162 (276)
32 2xot_A Amphoterin-induced prot 99.7 2.2E-16 7.7E-21 129.6 11.9 113 69-191 62-177 (361)
33 4b8c_D Glucose-repressible alc 99.7 1.5E-17 5.2E-22 148.1 5.3 104 73-190 226-329 (727)
34 2r9u_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 115.4 12.2 104 74-190 15-118 (174)
35 1ozn_A Reticulon 4 receptor; N 99.7 7.3E-16 2.5E-20 122.2 12.8 92 94-190 99-190 (285)
36 1p9a_G Platelet glycoprotein I 99.7 8.5E-16 2.9E-20 122.7 13.1 113 72-199 56-168 (290)
37 3vq2_A TLR4, TOLL-like recepto 99.7 5.6E-16 1.9E-20 134.6 13.0 93 93-190 73-166 (606)
38 2wfh_A SLIT homolog 2 protein 99.7 1.1E-15 3.8E-20 115.1 12.9 109 74-198 13-121 (193)
39 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.6E-20 121.3 12.9 107 74-190 59-166 (285)
40 3v47_A TOLL-like receptor 5B a 99.7 1.1E-15 3.8E-20 128.3 13.6 107 74-190 302-408 (455)
41 2je0_A Acidic leucine-rich nuc 99.7 6.8E-16 2.3E-20 111.1 10.4 110 71-191 17-127 (149)
42 1w8a_A SLIT protein; signaling 99.7 8.7E-16 3E-20 115.5 11.1 111 74-197 11-121 (192)
43 3rgz_A Protein brassinosteroid 99.6 4.5E-16 1.5E-20 139.3 10.6 114 74-198 445-558 (768)
44 3v47_A TOLL-like receptor 5B a 99.6 9.7E-16 3.3E-20 128.7 12.1 117 70-198 274-390 (455)
45 4fcg_A Uncharacterized protein 99.6 4.9E-16 1.7E-20 126.1 9.9 116 70-198 182-297 (328)
46 3t6q_A CD180 antigen; protein- 99.6 6.8E-16 2.3E-20 134.1 11.2 134 53-196 14-148 (606)
47 4g8a_A TOLL-like receptor 4; l 99.6 6.2E-16 2.1E-20 134.2 10.9 110 72-191 77-187 (635)
48 3zyi_A Leucine-rich repeat-con 99.6 1.3E-15 4.6E-20 128.3 12.2 124 53-186 56-180 (452)
49 2id5_A Lingo-1, leucine rich r 99.6 1.6E-15 5.6E-20 128.3 12.2 129 52-190 12-141 (477)
50 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.6E-20 120.2 10.8 114 72-195 29-142 (276)
51 2ell_A Acidic leucine-rich nuc 99.6 1E-15 3.4E-20 112.4 9.3 113 70-196 48-164 (168)
52 2o6r_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 109.5 13.1 110 74-198 10-119 (177)
53 2z66_A Variable lymphocyte rec 99.6 1.7E-15 5.9E-20 121.2 11.2 92 94-190 144-236 (306)
54 2ell_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 113.1 8.3 110 71-191 24-134 (168)
55 2xwt_C Thyrotropin receptor; s 99.6 4.5E-16 1.5E-20 120.5 7.1 114 72-197 32-174 (239)
56 1ogq_A PGIP-2, polygalacturona 99.6 3.1E-16 1.1E-20 126.4 6.4 109 71-190 101-210 (313)
57 3vq2_A TLR4, TOLL-like recepto 99.6 3.2E-15 1.1E-19 129.9 12.4 118 71-198 32-149 (606)
58 2ft3_A Biglycan; proteoglycan, 99.6 4E-15 1.4E-19 120.5 12.0 128 50-191 33-161 (332)
59 4ezg_A Putative uncharacterize 99.6 2.3E-15 7.7E-20 113.5 9.8 106 71-190 66-172 (197)
60 3zyj_A Leucine-rich repeat-con 99.6 4.6E-15 1.6E-19 124.6 12.5 124 53-186 45-169 (440)
61 2z66_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 122.3 8.2 136 50-196 7-169 (306)
62 2z63_A TOLL-like receptor 4, v 99.6 2.8E-15 9.6E-20 129.1 11.1 109 72-190 53-162 (570)
63 1ziw_A TOLL-like receptor 3; i 99.6 4.3E-15 1.5E-19 130.8 12.3 110 71-190 25-134 (680)
64 3o6n_A APL1; leucine-rich repe 99.6 1.2E-14 3.9E-19 120.2 13.1 141 35-190 3-154 (390)
65 1wwl_A Monocyte differentiatio 99.6 3.9E-15 1.3E-19 119.8 9.6 118 71-199 149-273 (312)
66 4ezg_A Putative uncharacterize 99.6 7.8E-15 2.7E-19 110.5 10.3 108 70-191 87-195 (197)
67 1a9n_A U2A', U2A'; complex (nu 99.6 7.2E-15 2.4E-19 108.8 9.9 105 72-189 43-152 (176)
68 2xwt_C Thyrotropin receptor; s 99.6 1.4E-15 4.7E-20 117.7 6.3 95 94-198 99-199 (239)
69 3oja_B Anopheles plasmodium-re 99.6 1.1E-14 3.9E-19 126.8 12.8 143 34-191 8-161 (597)
70 1xku_A Decorin; proteoglycan, 99.6 1.5E-14 5.2E-19 116.9 11.9 129 52-190 32-184 (330)
71 1dce_A Protein (RAB geranylger 99.6 1.4E-14 4.8E-19 125.7 12.2 105 72-191 442-547 (567)
72 2ifg_A High affinity nerve gro 99.6 1.3E-14 4.4E-19 118.1 11.3 89 96-190 27-116 (347)
73 1xku_A Decorin; proteoglycan, 99.6 1.8E-14 6.2E-19 116.5 11.9 85 100-190 192-276 (330)
74 3zyj_A Leucine-rich repeat-con 99.6 1.7E-14 5.7E-19 121.2 11.9 111 71-190 88-198 (440)
75 2je0_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 106.9 7.1 105 70-186 41-149 (149)
76 2id5_A Lingo-1, leucine rich r 99.6 8.7E-15 3E-19 123.8 10.1 107 74-190 83-189 (477)
77 3j0a_A TOLL-like receptor 5; m 99.6 7.7E-15 2.6E-19 132.6 9.9 111 73-191 50-162 (844)
78 2z63_A TOLL-like receptor 4, v 99.6 9.5E-15 3.3E-19 125.7 10.0 98 93-196 438-536 (570)
79 3zyi_A Leucine-rich repeat-con 99.6 2E-14 7E-19 121.1 11.8 110 72-190 100-209 (452)
80 3j0a_A TOLL-like receptor 5; m 99.6 1.3E-14 4.5E-19 131.0 11.2 117 69-194 22-140 (844)
81 3g39_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 105.8 9.8 107 50-166 9-116 (170)
82 2z81_A CD282 antigen, TOLL-lik 99.5 7.5E-15 2.6E-19 126.0 7.9 118 70-197 49-167 (549)
83 2z7x_B TOLL-like receptor 1, v 99.5 2E-14 6.9E-19 122.8 9.6 108 71-191 21-129 (520)
84 4glp_A Monocyte differentiatio 99.5 1.8E-14 6.3E-19 115.6 8.1 40 70-114 144-183 (310)
85 3oja_A Leucine-rich immune mol 99.5 2.9E-14 9.9E-19 121.6 9.5 110 73-197 122-232 (487)
86 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.7E-19 106.4 7.4 114 67-196 15-130 (176)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.1E-14 1.4E-18 122.2 10.6 108 71-191 52-160 (562)
88 3t6q_A CD180 antigen; protein- 99.5 4.7E-14 1.6E-18 122.5 11.0 110 71-190 57-166 (606)
89 2z7x_B TOLL-like receptor 1, v 99.5 2.4E-14 8.2E-19 122.3 8.8 111 70-197 44-159 (520)
90 2z80_A TOLL-like receptor 2, v 99.5 2.1E-14 7.4E-19 117.1 7.8 110 71-190 76-187 (353)
91 2ft3_A Biglycan; proteoglycan, 99.5 5.3E-14 1.8E-18 113.9 10.0 85 100-190 193-277 (332)
92 3o53_A Protein LRIM1, AGAP0063 99.5 3.4E-14 1.2E-18 114.5 8.7 109 74-197 123-232 (317)
93 4eco_A Uncharacterized protein 99.5 9.9E-14 3.4E-18 121.8 12.1 114 71-198 457-585 (636)
94 1ziw_A TOLL-like receptor 3; i 99.5 7.4E-14 2.5E-18 122.9 11.3 91 95-190 92-184 (680)
95 1wwl_A Monocyte differentiatio 99.5 2E-14 7E-19 115.6 7.0 87 70-166 94-187 (312)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 8.5E-14 2.9E-18 120.2 10.5 108 74-197 34-141 (562)
97 1h6t_A Internalin B; cell adhe 99.5 2.8E-13 9.7E-18 108.0 12.4 101 72-190 91-191 (291)
98 1h6u_A Internalin H; cell adhe 99.5 5.1E-13 1.7E-17 107.3 12.5 62 124-190 147-208 (308)
99 1xeu_A Internalin C; cellular 99.5 4.9E-13 1.7E-17 105.2 12.1 102 70-190 62-163 (263)
100 1h6t_A Internalin B; cell adhe 99.5 2.2E-13 7.4E-18 108.7 9.8 103 71-191 112-214 (291)
101 4ecn_A Leucine-rich repeat pro 99.5 4.2E-13 1.4E-17 121.5 12.9 115 71-199 697-826 (876)
102 2r9u_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 99.6 10.1 106 52-166 13-119 (174)
103 1h6u_A Internalin H; cell adhe 99.5 7.3E-13 2.5E-17 106.4 12.6 101 72-190 86-186 (308)
104 3oja_A Leucine-rich immune mol 99.5 4.7E-13 1.6E-17 114.1 11.9 109 72-194 145-254 (487)
105 4ay9_X Follicle-stimulating ho 99.5 5.7E-14 2E-18 114.7 5.9 136 50-199 9-174 (350)
106 4glp_A Monocyte differentiatio 99.4 1.2E-13 4E-18 110.9 7.3 120 69-194 167-289 (310)
107 4fmz_A Internalin; leucine ric 99.4 4.1E-13 1.4E-17 109.0 10.5 105 70-190 220-324 (347)
108 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.9E-18 122.1 8.9 169 8-198 130-312 (727)
109 1m9s_A Internalin B; cell inva 99.4 7.5E-13 2.6E-17 115.7 12.1 84 96-190 127-210 (605)
110 3o53_A Protein LRIM1, AGAP0063 99.4 3.2E-13 1.1E-17 108.8 8.9 106 71-190 144-250 (317)
111 1m9s_A Internalin B; cell inva 99.4 1.2E-12 4.1E-17 114.4 12.7 103 71-191 87-189 (605)
112 2ifg_A High affinity nerve gro 99.4 6.3E-13 2.2E-17 108.0 9.8 106 50-166 8-117 (347)
113 1xeu_A Internalin C; cellular 99.4 1.7E-12 5.7E-17 102.1 11.3 105 69-192 39-143 (263)
114 4fmz_A Internalin; leucine ric 99.4 3.2E-12 1.1E-16 103.6 12.1 103 72-190 244-346 (347)
115 1dce_A Protein (RAB geranylger 99.4 2.8E-12 9.6E-17 111.3 10.2 102 70-184 462-567 (567)
116 2ca6_A RAN GTPase-activating p 99.3 3.9E-13 1.3E-17 110.9 4.2 115 72-191 188-317 (386)
117 3bz5_A Internalin-J, INLJ; leu 99.3 8.4E-12 2.9E-16 105.6 11.8 96 71-188 64-159 (457)
118 3cvr_A Invasion plasmid antige 99.3 4.1E-12 1.4E-16 110.3 9.8 93 72-190 81-173 (571)
119 1o6v_A Internalin A; bacterial 99.3 1.4E-11 5E-16 104.0 12.3 84 96-190 283-366 (466)
120 1o6v_A Internalin A; bacterial 99.3 1.6E-11 5.5E-16 103.7 11.9 102 72-191 288-389 (466)
121 1ds9_A Outer arm dynein; leuci 99.3 3.2E-14 1.1E-18 107.1 -4.2 106 70-190 47-153 (198)
122 2ast_B S-phase kinase-associat 99.3 8.3E-13 2.8E-17 106.6 2.9 87 96-187 114-205 (336)
123 3cvr_A Invasion plasmid antige 99.3 4E-11 1.4E-15 104.0 12.2 94 71-190 100-193 (571)
124 2ast_B S-phase kinase-associat 99.3 7.2E-13 2.5E-17 106.9 0.8 88 98-190 91-182 (336)
125 3goz_A Leucine-rich repeat-con 99.2 5.5E-12 1.9E-16 103.3 4.3 118 72-191 52-181 (362)
126 4ay9_X Follicle-stimulating ho 99.2 1.6E-11 5.5E-16 100.2 6.8 90 100-196 30-121 (350)
127 3bz5_A Internalin-J, INLJ; leu 99.2 1.3E-10 4.6E-15 98.2 12.5 83 96-192 166-248 (457)
128 2ca6_A RAN GTPase-activating p 99.2 8.7E-12 3E-16 102.8 4.4 114 71-190 159-287 (386)
129 1ds9_A Outer arm dynein; leuci 99.2 2.6E-13 9E-18 102.1 -6.2 87 95-191 43-129 (198)
130 1jl5_A Outer protein YOPM; leu 99.1 2.9E-10 9.9E-15 96.0 11.7 100 72-190 132-250 (454)
131 1z7x_W Ribonuclease inhibitor; 99.1 1.1E-11 3.8E-16 104.0 2.3 119 72-191 285-412 (461)
132 3goz_A Leucine-rich repeat-con 99.1 3E-11 1E-15 98.9 4.6 114 72-191 23-152 (362)
133 1jl5_A Outer protein YOPM; leu 99.1 5.9E-10 2E-14 94.1 11.9 81 95-190 190-270 (454)
134 1z7x_W Ribonuclease inhibitor; 99.1 1.5E-11 5.2E-16 103.2 1.0 63 74-140 230-296 (461)
135 3g06_A SSPH2 (leucine-rich rep 99.1 6.5E-10 2.2E-14 97.4 11.2 78 100-191 221-298 (622)
136 3rw6_A Nuclear RNA export fact 99.1 1.5E-11 5E-16 97.0 0.0 81 97-183 167-257 (267)
137 3g06_A SSPH2 (leucine-rich rep 99.0 1.5E-09 5E-14 95.2 11.9 85 100-197 181-279 (622)
138 3un9_A NLR family member X1; l 99.0 7.2E-11 2.5E-15 97.4 3.4 116 74-190 129-252 (372)
139 3sb4_A Hypothetical leucine ri 98.9 3.1E-09 1.1E-13 85.8 9.3 92 99-199 225-317 (329)
140 3sb4_A Hypothetical leucine ri 98.9 2.4E-09 8.1E-14 86.4 8.6 103 70-184 225-328 (329)
141 1io0_A Tropomodulin; LRR prote 98.9 4.2E-10 1.4E-14 83.9 2.7 118 71-190 36-164 (185)
142 3un9_A NLR family member X1; l 98.9 2.7E-10 9.2E-15 94.0 1.2 115 72-191 102-225 (372)
143 3rw6_A Nuclear RNA export fact 98.8 4.9E-09 1.7E-13 82.6 6.3 136 49-191 77-234 (267)
144 3ogk_B Coronatine-insensitive 98.7 3.5E-09 1.2E-13 91.4 1.2 93 96-192 432-528 (592)
145 2p1m_B Transport inhibitor res 98.5 9.7E-09 3.3E-13 88.6 -0.4 90 96-190 428-519 (594)
146 1io0_A Tropomodulin; LRR prote 98.5 1.1E-07 3.8E-12 70.6 4.4 97 93-190 29-136 (185)
147 4fdw_A Leucine rich hypothetic 98.4 1.1E-06 3.6E-11 73.1 8.8 92 91-190 262-358 (401)
148 3ogk_B Coronatine-insensitive 98.4 4.4E-07 1.5E-11 78.2 5.9 88 70-159 163-250 (592)
149 2p1m_B Transport inhibitor res 98.3 2.2E-07 7.6E-12 80.0 1.8 61 99-163 129-195 (594)
150 3e4g_A ATP synthase subunit S, 98.2 4.6E-07 1.6E-11 66.8 2.9 82 101-187 62-149 (176)
151 4fdw_A Leucine rich hypothetic 98.1 7.3E-06 2.5E-10 68.0 8.3 65 123-190 266-335 (401)
152 2ra8_A Uncharacterized protein 98.1 5.4E-07 1.8E-11 73.9 0.7 117 70-190 192-320 (362)
153 3e4g_A ATP synthase subunit S, 97.9 3E-06 1E-10 62.4 1.7 85 73-166 63-154 (176)
154 1pgv_A TMD-1, tropomodulin TMD 97.9 7.3E-06 2.5E-10 61.4 3.1 116 72-189 42-169 (197)
155 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.7E-10 65.5 4.3 88 99-191 192-293 (362)
156 3rfe_A Platelet glycoprotein I 97.8 6.1E-05 2.1E-09 52.6 6.3 57 103-165 11-68 (130)
157 4h09_A Hypothetical leucine ri 97.6 0.00021 7.3E-09 58.2 8.6 88 93-187 256-343 (379)
158 3rfe_A Platelet glycoprotein I 97.6 0.0002 6.9E-09 49.9 6.7 38 100-141 31-68 (130)
159 4gt6_A Cell surface protein; l 97.5 0.00071 2.4E-08 55.5 10.2 88 93-188 281-368 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00013 4.5E-09 54.6 5.0 93 95-188 36-137 (197)
161 4fs7_A Uncharacterized protein 97.3 0.00049 1.7E-08 56.5 6.9 87 93-187 290-376 (394)
162 4gt6_A Cell surface protein; l 97.2 0.001 3.5E-08 54.6 7.9 90 91-190 302-391 (394)
163 4h09_A Hypothetical leucine ri 97.2 0.0013 4.4E-08 53.5 8.5 88 93-187 233-320 (379)
164 4fs7_A Uncharacterized protein 96.9 0.004 1.4E-07 51.0 8.7 92 94-198 270-361 (394)
165 2lz0_A Uncharacterized protein 70.1 9.9 0.00034 24.5 5.1 49 109-162 5-53 (100)
166 2lz0_A Uncharacterized protein 59.0 18 0.00061 23.2 4.7 43 91-138 11-53 (100)
167 3ox7_P MH027; urokinase-type p 24.2 29 0.00099 15.4 0.8 10 47-57 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.5e-27 Score=189.60 Aligned_cols=162 Identities=22% Similarity=0.393 Sum_probs=124.9
Q ss_pred CCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCceEecCCC--CCeEEEecCC---------
Q 045715 6 GCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDD--WVGVKCSATT--RRVMQLSLNY--------- 72 (199)
Q Consensus 6 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~C~~~~--~~v~~l~l~~--------- 72 (199)
.|.++|++||++||+++.+|. .+.+|.. +.+|| . |.||+|+... ++|+.+++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-------cccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 699999999999999996654 5789976 56888 7 9999998644 7888887653
Q ss_pred ---------ccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC
Q 045715 73 ---------TTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND 142 (199)
Q Consensus 73 ---------~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~ 142 (199)
+++|++++ |.+.. ..+..|.++++|++|++++|.+++.+|. .|..+++|++|++++|++++
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~ 139 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVG-----PIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSG 139 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEES-----CCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEES
T ss_pred ChhHhCCCCCCeeeCCCCCcccc-----cCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCC
Confidence 35677773 66653 2355677778888888888888777776 77778888888888888877
Q ss_pred CChhhhcCCCCCCEEecCCCcCCCccchhhccCCC-CCCEEeCcCCccC
Q 045715 143 NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK-NLEALDLSSNYYI 190 (199)
Q Consensus 143 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~Ls~N~l~ 190 (199)
.+|..+..+++|++|+|++|.+++.+|. .+..++ +|+.|++++|+++
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEE
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeee
Confidence 7777777888888888888888766775 677776 7788888887776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6e-23 Score=183.77 Aligned_cols=53 Identities=25% Similarity=0.529 Sum_probs=43.8
Q ss_pred CCCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCC
Q 045715 5 KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNY 72 (199)
Q Consensus 5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~ 72 (199)
..+.++|+.||++||+++.+|. .+++|.. +.+|| .|.||+|+ .++|+.+++++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-------~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~ 59 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-------LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSS 59 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-------cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCC
Confidence 3467889999999999997654 6889986 57899 99999998 58999998764
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=1.6e-22 Score=177.74 Aligned_cols=173 Identities=15% Similarity=0.147 Sum_probs=134.6
Q ss_pred HHhHHHHHHHHhccccCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC---CceEecCCCCCeEEEecCCc----------
Q 045715 9 ETERTALLEIKSFFISVSDIGYD--DKILPSWVGEDDGMPSDCCDDW---VGVKCSATTRRVMQLSLNYT---------- 73 (199)
Q Consensus 9 ~~~~~al~~~~~~~~~~~~~~~~--~~~~~~W~~~~~~~~~~~c~~w---~gv~C~~~~~~v~~l~l~~~---------- 73 (199)
..|+.||.+|++++.++.-...+ .....+|+. ..+|| .| .||+|+.. ++|++++|++.
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcCC-CCEEEEEecCcccCCcCChHH
Confidence 46899999999999777510000 012347987 67899 99 99999864 89999998754
Q ss_pred ------cceeccCCCcccc-------------------------------------------------------------
Q 045715 74 ------TKFNYSYNSVYWE------------------------------------------------------------- 86 (199)
Q Consensus 74 ------~~L~ls~N~~~~~------------------------------------------------------------- 86 (199)
+.|+|++|.+...
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 7899999965100
Q ss_pred ------------ccccccccccCCCCCCcEEECCCCccCcc-----------------ccccchhhcc--CCCCCCEEEc
Q 045715 87 ------------GVLVLNMSLFHPFEELQRLDLPMNWFTGI-----------------YENRAYDSFG--SLRQLKMLNL 135 (199)
Q Consensus 87 ------------~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~~~~~--~l~~L~~L~L 135 (199)
.+.. .|..+.++++|++|+|++|.+++. +|. .++ .+++|++|++
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEE
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEe
Confidence 1112 255688899999999999999985 787 888 9999999999
Q ss_pred CCCCCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchhhccCC------CCCCEEeCcCCccCCCCcCC
Q 045715 136 GNNDFNDNILPYLNTLTSLTTLNLRYNS-IEG-SRTKQGLAKL------KNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 136 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l------~~L~~L~Ls~N~l~~~~ip~ 196 (199)
++|++.+.+|..++++++|++|+|++|+ +++ .+|. .++.+ ++|++|++++|+++ .+|.
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~ 322 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK--TFPV 322 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS--SCCC
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC--ccCc
Confidence 9999999999999999999999999998 887 7776 56665 88888888888887 5665
No 4
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.9e-20 Score=143.12 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=102.8
Q ss_pred CCCCCCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc
Q 045715 46 PSDCCDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF 124 (199)
Q Consensus 46 ~~~~c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 124 (199)
....| +|.+|.|.+... .+..--..+++.|+|++|.+.. +.+..|..+++|++|+|++|.++...+. .|
T Consensus 15 ~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~N~l~~i~~~----~~ 84 (229)
T 3e6j_A 15 SQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----LEPGVFDSLINLKELYLGSNQLGALPVG----VF 84 (229)
T ss_dssp TTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred CCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----cCHHHhhCccCCcEEECCCCCCCCcChh----hc
Confidence 46778 999999976321 2222123677888999988876 5566778888888888888888775555 67
Q ss_pred cCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 125 GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 125 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|. .+..+++|++|+|++|+|+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCC
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCC
Confidence 888888888888888887666677888888888888888886 776 6788888888888888887
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=6.9e-21 Score=172.17 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=127.1
Q ss_pred CcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CceEecCCCCCeEEEecCC
Q 045715 7 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDC--CDDW------------VGVKCSATTRRVMQLSLNY 72 (199)
Q Consensus 7 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~C~~~~~~v~~l~l~~ 72 (199)
+..+|+.||++||+++.+| +|+..++....+| | .| .||+|+. .++|+.|+|++
T Consensus 266 ~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~ 332 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG 332 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT
T ss_pred cchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEECcc
Confidence 4557999999999999554 3443100001234 8 99 9999986 68999999875
Q ss_pred c----------------cceec-cCCCccccc------------------------------------------------
Q 045715 73 T----------------TKFNY-SYNSVYWEG------------------------------------------------ 87 (199)
Q Consensus 73 ~----------------~~L~l-s~N~~~~~~------------------------------------------------ 87 (199)
. +.|+| +.|.+....
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 4 78999 777543220
Q ss_pred ------------------------cccccccccCCCCCCcEEECCCCccCc-----------------cccccchhhcc-
Q 045715 88 ------------------------VLVLNMSLFHPFEELQRLDLPMNWFTG-----------------IYENRAYDSFG- 125 (199)
Q Consensus 88 ------------------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~~~~~- 125 (199)
+.. .|..|.++++|++|+|++|.+++ .+|. .++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f 487 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSW 487 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCG
T ss_pred cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhh
Confidence 000 25568889999999999999998 3777 766
Q ss_pred -CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchhhccCC-------CCCCEEeCcCCccCCCCcC
Q 045715 126 -SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNS-IEG-SRTKQGLAKL-------KNLEALDLSSNYYIHGSLE 195 (199)
Q Consensus 126 -~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l-------~~L~~L~Ls~N~l~~~~ip 195 (199)
.+++|++|+|++|++.+.+|..|+++++|+.|+|++|+ +++ .+|. .++.+ ++|++|+|++|+++ .+|
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip 564 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE--EFP 564 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence 89999999999999998999999999999999999998 887 6775 44444 48888888888887 566
Q ss_pred C
Q 045715 196 G 196 (199)
Q Consensus 196 ~ 196 (199)
.
T Consensus 565 ~ 565 (876)
T 4ecn_A 565 A 565 (876)
T ss_dssp C
T ss_pred C
Confidence 5
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-21 Score=159.15 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=103.4
Q ss_pred CCcHHhHHHHHHHHhccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCCeEEEecC-----
Q 045715 6 GCLETERTALLEIKSFFI-SVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA--------TTRRVMQLSLN----- 71 (199)
Q Consensus 6 ~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~--------~~~~v~~l~l~----- 71 (199)
.+..+|+.||++||..+. ++. .+...|.... ....++| .|.|+.|.. ...+|+.++++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~-~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~ 94 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRN------RWHSAWRQAN-SNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP 94 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHT-TTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred ccCchHHHHHHHHHHhccCCch------hhhhhhcccc-ccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence 356678999999999884 443 4678894100 0156788 999999952 23466666654
Q ss_pred ----------CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC---------------
Q 045715 72 ----------YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS--------------- 126 (199)
Q Consensus 72 ----------~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~--------------- 126 (199)
++++|++++|.+.. + +..+..+++|++|+|++|.++. +|. .+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~-----l-p~~~~~l~~L~~L~Ls~n~l~~-lp~----~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLME-----L-PDTMQQFAGLETLTLARNPLRA-LPA----SIASLNRLRELSIRACPEL 163 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCC-----C-CSCGGGGTTCSEEEEESCCCCC-CCG----GGGGCTTCCEEEEEEETTC
T ss_pred hcChhhhhCCCCCEEECCCCCccc-----h-hHHHhccCCCCEEECCCCcccc-CcH----HHhcCcCCCEEECCCCCCc
Confidence 34778888887763 2 3345556666666666666663 454 4444
Q ss_pred ------------------CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715 127 ------------------LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 127 ------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 188 (199)
+++|++|++++|+++ .+|..++.+++|++|+|++|.+++ +|. .+..+++|+.|++++|+
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCc
Confidence 445555555555555 445555566666666666666665 554 46666666666666666
Q ss_pred cCCCCcCCC
Q 045715 189 YIHGSLEGN 197 (199)
Q Consensus 189 l~~~~ip~~ 197 (199)
+. +.+|..
T Consensus 241 ~~-~~~p~~ 248 (328)
T 4fcg_A 241 AL-RNYPPI 248 (328)
T ss_dssp TC-CBCCCC
T ss_pred ch-hhhHHH
Confidence 65 344443
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=138.05 Aligned_cols=128 Identities=25% Similarity=0.345 Sum_probs=101.9
Q ss_pred CCCCCceEecCCCCCeEEE--e-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715 50 CDDWVGVKCSATTRRVMQL--S-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS 126 (199)
Q Consensus 50 c~~w~gv~C~~~~~~v~~l--~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 126 (199)
| .|..|.|.+.. ++.+ . ...++.|++++|.+.. +.+..|..+++|++|+|++|.+++..|. .|..
T Consensus 11 C-~~~~v~c~~~~--l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~ 78 (220)
T 2v9t_B 11 C-SNNIVDCRGKG--LTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPD----AFQG 78 (220)
T ss_dssp E-ETTEEECTTSC--CSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTT----TTTT
T ss_pred E-CCCEEEcCCCC--cCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHH----HhhC
Confidence 6 89999997632 2222 1 2467888899888875 5566788888999999999999887777 8888
Q ss_pred CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 127 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|++|+|++|+++...+..|..+++|++|+|++|++++ +++..|..+++|+.|+|++|+|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCC
Confidence 8999999999999886655667888889999999999888 54447888889999999999888
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=4.7e-19 Score=134.65 Aligned_cols=130 Identities=26% Similarity=0.293 Sum_probs=88.3
Q ss_pred CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715 50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128 (199)
Q Consensus 50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~ 128 (199)
| .|.+|.|..... .+..-..+.++.|++++|.+.. +.+..|..+++|++|++++|++++..+. .|..++
T Consensus 7 C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~ 76 (208)
T 2o6s_A 7 C-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNG----VFNKLT 76 (208)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred E-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChh----hcCCCC
Confidence 6 899999976322 1111123456778888877764 4455566777777777777777765444 566777
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|++|++++|++++..+..|..+++|++|++++|.+++ ++...+..+++|++|++++|+++
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccc
Confidence 77777777777775555556777777777777777776 55445677777777777777776
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=7.3e-19 Score=137.45 Aligned_cols=107 Identities=31% Similarity=0.400 Sum_probs=65.2
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
++|++++|.+.. +.+..|..+++|++|++++|.+++..+. .|..+++|++|+|++|++++..+..|..+++
T Consensus 62 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 62 TWLNLDYNQLQT-----LSAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp CEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEECCCCcCCc-----cCHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 444444444443 3344455566666666666666654444 5566666666666666666555555666667
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|++|+|++|++++ +|...|..+++|++|+|++|+|+
T Consensus 133 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 133 LKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCC
Confidence 7777777777666 55445666777777777777776
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=5.5e-19 Score=153.43 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=108.0
Q ss_pred ceEecCCCCCeEEEecC-CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEE
Q 045715 55 GVKCSATTRRVMQLSLN-YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKML 133 (199)
Q Consensus 55 gv~C~~~~~~v~~l~l~-~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L 133 (199)
.|.|.+.....+.-+++ .+++|+|++|.++. +++..|.++++|++|+|++|.|+++.|. +|..+++|++|
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L 105 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTL 105 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEE
Confidence 46786533222222443 67899999999986 6678899999999999999999987776 88999999999
Q ss_pred EcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 134 NLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 134 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
+|++|++++..+..|.++++|++|+|++|++++ +|...|+++++|++|++++|.+++..+|..
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchh
Confidence 999999987777788999999999999999988 776578899999999999999986666643
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.79 E-value=1.7e-18 Score=128.47 Aligned_cols=129 Identities=20% Similarity=0.325 Sum_probs=110.5
Q ss_pred CCCCCceEecCCCCCeEEE---ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715 50 CDDWVGVKCSATTRRVMQL---SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS 126 (199)
Q Consensus 50 c~~w~gv~C~~~~~~v~~l---~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 126 (199)
| .|.++.|.... ++.+ ..+.++.|++++|.+.. +++..|..+++|++|++++|.+++..+. .|..
T Consensus 7 C-~~~~l~~~~~~--l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 74 (177)
T 2o6r_A 7 C-SGTEIRCNSKG--LTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSQNQIQSLPDG----VFDK 74 (177)
T ss_dssp E-ETTEEECCSSC--CSSCCTTCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTT
T ss_pred e-CCCEEEecCCC--CccCCCCCCCCCcEEEeCCCcccE-----eCHHHhcCcccccEEECCCCcceEeChh----HccC
Confidence 5 89999997632 2222 23578999999999875 5567788999999999999999986665 6899
Q ss_pred CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 127 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|++++|++++..+..+..+++|++|++++|.+++ +|...+..+++|++|++++|++++
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence 9999999999999998777778999999999999999998 777567889999999999999983
No 12
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=6.7e-19 Score=132.60 Aligned_cols=131 Identities=27% Similarity=0.340 Sum_probs=110.7
Q ss_pred CCCCCceEecCCCC-CeEEEecCCccceeccCCCcccccccccccc-ccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715 50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMS-LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127 (199)
Q Consensus 50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l 127 (199)
| .|..+.|.+... .+..--...++.|++++|.+.. +.+. .|..+++|++|+|++|.+++..|. .|..+
T Consensus 8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l 77 (192)
T 1w8a_A 8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIEPN----AFEGA 77 (192)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBCTT----TTTTC
T ss_pred E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcCHh----HcCCc
Confidence 6 899999976322 2222123377999999999876 4443 588999999999999999998888 99999
Q ss_pred CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
++|++|+|++|++++..+..|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence 9999999999999988888899999999999999999995554 89999999999999999983
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.1e-18 Score=136.18 Aligned_cols=90 Identities=28% Similarity=0.342 Sum_probs=47.9
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|..+++|++|+|++|.+++ +|...|..
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~ 155 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccC
Confidence 34444444444444444443333 44555555555555555554444445555556666666665555 44434555
Q ss_pred CCCCCEEeCcCCccC
Q 045715 176 LKNLEALDLSSNYYI 190 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~ 190 (199)
+++|+.|++++|+++
T Consensus 156 l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 156 LTSLKELRLYNNQLK 170 (270)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CcccceeEecCCcCc
Confidence 666666666666665
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=131.99 Aligned_cols=130 Identities=23% Similarity=0.333 Sum_probs=85.2
Q ss_pred CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccc-cccccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715 50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVL-NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127 (199)
Q Consensus 50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l 127 (199)
| .|..+.|.+... .+..--...++.|++++|.+.. + +...|..+++|++|+|++|.+++..+. .|..+
T Consensus 11 C-~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l 80 (220)
T 2v70_A 11 C-EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV-----LEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGA 80 (220)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECCCCCGGGCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred E-CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc-----cCchhhhccCCCCCEEECCCCcCCEECHH----HhCCC
Confidence 5 788888875321 1111112345677777777765 3 234466677777777777777776555 67777
Q ss_pred CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|+|++|++++..+..|..+++|++|+|++|++++ +++..|..+++|+.|+|++|+|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCC
Confidence 777777777777776666667777777777777777776 43336777777777777777776
No 15
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=6.4e-18 Score=127.44 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=110.0
Q ss_pred CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715 50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128 (199)
Q Consensus 50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~ 128 (199)
| .|..+.|.+... .+..--..+++.|++++|.+.. + +..|..+++|++|+|++|.+++..+. .|..++
T Consensus 10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-----i-p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~ 78 (193)
T 2wfh_A 10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-----V-PKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMT 78 (193)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-----C-CGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCT
T ss_pred e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-----h-HHHhhcccCCCEEECCCCcCCEeCHh----HccCCC
Confidence 5 788899975321 1211123578999999999974 4 36788999999999999999997777 899999
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|++|+|++|++++..+..|..+++|++|+|++|.++. +|...|..+++|+.|++++|++.
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 99999999999998888889999999999999999998 77767999999999999999986
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2.1e-17 Score=129.11 Aligned_cols=107 Identities=23% Similarity=0.339 Sum_probs=53.5
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
++|++++|.+.. +++..|..+++|++|+|++|.+++..+. .|..+++|++|+|++|++++..+..|..+++
T Consensus 86 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 86 GTLGLANNQLAS-----LPLGVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp CEEECTTSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEECCCCcccc-----cChhHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 445555555543 3344444555555555555555543333 3445555555555555555444444555555
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|++|+|++|++++ ++...+..+++|+.|++++|+++
T Consensus 157 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCcee
Confidence 5555555555554 33334455555555555555554
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=127.81 Aligned_cols=112 Identities=23% Similarity=0.238 Sum_probs=102.0
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
.+..++.|++++|.+.. +.+..|..+++|++|+|++|.+++..+. .|..+++|++|+|++|++++..|..|
T Consensus 55 ~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 55 KLPQLRKINFSNNKITD-----IEEGAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp GCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred cCCCCCEEECCCCcCCE-----ECHHHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHc
Confidence 35678999999999986 6677899999999999999999997776 79999999999999999998889999
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+++|++|+|++|++++ +++..|..+++|+.|+|++|+++
T Consensus 126 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 126 IGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCc
Confidence 999999999999999999 54448999999999999999987
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.9e-17 Score=126.16 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=100.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+.+++.|+|++|.+.. +.+..|..+++|++|+|++|.++...+. .|..+++|++|+|++|++++..|..|.
T Consensus 55 l~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISE-----LAPDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp CTTCCEEECCSSCCCE-----ECTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCcCCC-----cCHHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 4567899999999986 6678899999999999999999986555 688999999999999999988899999
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|+.|+|++|.+++ ++...|..+++|+.|+|++|+++
T Consensus 126 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999999999999999 66657999999999999999986
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.1e-17 Score=135.79 Aligned_cols=130 Identities=23% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCCCCceEecCCCCCeEEEe-cCCccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCC
Q 045715 50 CDDWVGVKCSATTRRVMQLS-LNYTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSL 127 (199)
Q Consensus 50 c~~w~gv~C~~~~~~v~~l~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l 127 (199)
| .+..+.|.+.......-. ...++.|+|++|.+.. +.+..|. .+++|++|+|++|.+++..+. .|..+
T Consensus 18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l 87 (361)
T 2xot_A 18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPV 87 (361)
T ss_dssp E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred E-CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChh----hccCC
Confidence 5 778888865221110001 1224556666665544 3333333 444555555555555443333 44444
Q ss_pred CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|+|++|+++...+..|..+++|++|+|++|+|++ +++..|..+++|+.|+|++|+|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCC
Confidence 444444444444443333344444444444444444444 22223444444444444444444
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-17 Score=138.15 Aligned_cols=93 Identities=24% Similarity=0.259 Sum_probs=51.3
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
+..|..+++|++|++++|.+++..|. .|..+++|++|++++|+++...+..|..+++|++|++++|.+++ +++..
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 160 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDT 160 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTT
T ss_pred hhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhh
Confidence 34455555555555555555554444 45555566666666666553333334555566666666666555 33334
Q ss_pred ccCCCCCCEEeCcCCccC
Q 045715 173 LAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l~ 190 (199)
+..+++|+.|++++|+++
T Consensus 161 ~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TSSCTTCCEEECCSSCCS
T ss_pred ccCCCCCCEEECCCCcCC
Confidence 555666666666666555
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=1.4e-16 Score=127.26 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=95.7
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
..++.|++++|.+.. + +..+..+++|++|++++|++++..+. .|..+++|++|+|++|++++..+..|..
T Consensus 77 ~~L~~L~Ls~N~l~~-----l-~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-----L-PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp TTCCEEECCSSCCSS-----C-CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CcCCEEECCCCcCCc-----C-chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhccc
Confidence 445677777777763 2 44567888999999999999986666 7889999999999999999777777888
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
+++|+.|+|++|++++ +|...|..+++|+.|+|++|+|+ .+|..+|
T Consensus 147 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~ 192 (290)
T 1p9a_G 147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY--TIPKGFF 192 (290)
T ss_dssp CTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC--CCCTTTT
T ss_pred ccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC--ccChhhc
Confidence 9999999999999987 77766788999999999999998 6777665
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=132.50 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=103.6
Q ss_pred CCCCCCCCCceEecCCCCCeEEEe---cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchh
Q 045715 46 PSDCCDDWVGVKCSATTRRVMQLS---LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYD 122 (199)
Q Consensus 46 ~~~~c~~w~gv~C~~~~~~v~~l~---l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 122 (199)
...+| .|.++ |+-...+++.+. .+.+++|++++|.+.. +.+..|.++++|++|++++|.+++..|.
T Consensus 26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 94 (353)
T 2z80_A 26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEED---- 94 (353)
T ss_dssp -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHh----
Confidence 34567 89987 764444444442 2467889999998875 5566788899999999999999887676
Q ss_pred hccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCc-cC
Q 045715 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNY-YI 190 (199)
Q Consensus 123 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~-l~ 190 (199)
.|..+++|++|++++|++++..+..+..+++|++|++++|++++ +|. ..+..+++|++|++++|. ++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCcccc
Confidence 78888999999999999986666668888999999999998887 665 467888888888888884 55
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2e-16 Score=124.96 Aligned_cols=109 Identities=27% Similarity=0.329 Sum_probs=63.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++++|++++|.+.. +.+..|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..+..+
T Consensus 86 ~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 86 NLTYLILTGNQLQS-----LPNGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156 (272)
T ss_dssp TCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECCCCccCc-----cChhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccC
Confidence 34566666666553 3344455666666666666666654444 45556666666666666665444455566
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|++++|++++ ++...+..+++|++|++++|+++
T Consensus 157 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 157 TNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCC
Confidence 666666666666665 44334555666666666666665
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.4e-16 Score=119.60 Aligned_cols=111 Identities=24% Similarity=0.281 Sum_probs=98.6
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+..+++|++++|.+.. +++..|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|.
T Consensus 51 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~ 121 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFD 121 (208)
T ss_dssp CTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCcEEECCCCccCc-----cChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhc
Confidence 4567899999998875 5567788999999999999999986665 689999999999999999977777789
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|++|++++|.+++ ++...+..+++|+.|++++|.+.
T Consensus 122 ~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee
Confidence 99999999999999998 67656899999999999999987
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.2e-16 Score=124.52 Aligned_cols=109 Identities=26% Similarity=0.328 Sum_probs=81.7
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.+++|++++|.+.. +++..|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|..+
T Consensus 86 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 86 NLETLWVTDNKLQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TCCEEECCSSCCCC-----CCTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECCCCcCCc-----CCHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 34556666665553 4455677788888888888888886665 67788888888888888886655667788
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|+|++|.+++ ++...|..+++|++|++++|+++
T Consensus 157 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 157 TSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCC
Confidence 888888888888887 55546777888888888888887
No 26
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.9e-16 Score=116.94 Aligned_cols=86 Identities=29% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 179 (199)
+.|++|+|++|.+++..|. .|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++ +|...|..+++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence 7788999999999987777 78889999999999999987767778888999999999999988 666568888999
Q ss_pred CEEeCcCCccC
Q 045715 180 EALDLSSNYYI 190 (199)
Q Consensus 180 ~~L~Ls~N~l~ 190 (199)
+.|+|++|+++
T Consensus 105 ~~L~L~~N~~~ 115 (170)
T 3g39_A 105 THIWLLNNPWD 115 (170)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEeCCCCCC
Confidence 99999999887
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.8e-16 Score=122.44 Aligned_cols=111 Identities=24% Similarity=0.257 Sum_probs=99.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+.+++.|+|++|.+.. +++..|..+++|++|+|++|.+++..+. .|..+++|++|+|++|+++ .+|..+.
T Consensus 63 l~~L~~L~L~~N~l~~-----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 63 LINLKELYLGSNQLGA-----LPVGVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp CTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred ccCCcEEECCCCCCCC-----cChhhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccc
Confidence 3456899999999965 6677789999999999999999997666 7899999999999999999 7888899
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
.+++|++|+|++|++++ ++...+..+++|+.|++++|+++.
T Consensus 133 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp GCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999999999999998 776579999999999999999973
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=9e-17 Score=138.02 Aligned_cols=130 Identities=25% Similarity=0.360 Sum_probs=104.3
Q ss_pred CCCCCCceEecCCCCCeEEEe---cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc
Q 045715 49 CCDDWVGVKCSATTRRVMQLS---LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG 125 (199)
Q Consensus 49 ~c~~w~gv~C~~~~~~v~~l~---l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 125 (199)
.| .|.|+ |+.....++++. .+.+++|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|.
T Consensus 3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~ 71 (549)
T 2z81_A 3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGD----AFY 71 (549)
T ss_dssp EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTT----TTT
T ss_pred cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChh----hcc
Confidence 37 89998 875433443332 3577899999998875 5567788899999999999999987777 888
Q ss_pred CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 126 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|++|++++|++++..+..|+.+++|++|++++|.+++ .+|. .+.++++|++|++++|.+.
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSC
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccc
Confidence 99999999999999998777779999999999999999886 2454 6888888999999888843
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=6.1e-17 Score=141.14 Aligned_cols=109 Identities=22% Similarity=0.240 Sum_probs=67.1
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
++.|++++|.+.. +.+..|..+++|++|+|++|.+++..|. .|+.+++|++|+|++|.+++..+..|+.++
T Consensus 77 L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 77 VELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp CSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcEEECCCCCCCC-----CChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 3455555555543 3444566666666666666666665554 566666666666666666644444456666
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+|++|+|++|.+++ +++..|..+++|++|++++|.+++
T Consensus 148 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 148 KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCC
Confidence 66666666666666 333356666667777777666663
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=4.3e-16 Score=123.05 Aligned_cols=109 Identities=29% Similarity=0.269 Sum_probs=97.9
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+++++.|++++|.+.. ...+..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|.
T Consensus 62 l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CTTCCEEECTTSCCCC-------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCcEEECCCCCCCC-------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 6678899999998875 34678999999999999999997766 789999999999999999987777899
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus 131 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcC
Confidence 99999999999999998 66657899999999999999999
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.1e-16 Score=124.85 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=70.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++++|++++|.+.. +.+..|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..+..+
T Consensus 53 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 123 (276)
T 2z62_A 53 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL 123 (276)
T ss_dssp TCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccC
Confidence 34566666665543 3444566666777777777776665555 66667777777777777765555456667
Q ss_pred CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|++++|.+++ .+|. .+..+++|++|++++|+++
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCC
Confidence 777777777777765 2344 5667777777777777776
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=2.2e-16 Score=129.62 Aligned_cols=113 Identities=28% Similarity=0.286 Sum_probs=100.6
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
.+.+++.|+|++|.+.. +.+..|..+++|++|+|++|+++...+. .|..+++|++|+|++|++++..+..|
T Consensus 62 ~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp CCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHh
Confidence 56778999999999986 6677899999999999999999997776 79999999999999999998888899
Q ss_pred cCCCCCCEEecCCCcCCCccchhhc---cCCCCCCEEeCcCCccCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGL---AKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~---~~l~~L~~L~Ls~N~l~~ 191 (199)
..+++|+.|+|++|.+++ +|...| ..+++|+.|+|++|+|++
T Consensus 133 ~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp TTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999999999999999998 887555 579999999999999993
No 33
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.5e-17 Score=148.11 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=74.9
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
++.|+|++|.+.. ++.. +..+++|++|+|++|.|+ .+|. .|..+++|++|+|++|+|+ .+|..|+.++
T Consensus 226 L~~L~Ls~n~l~~-----l~~~-~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 226 WHALDLSNLQIFN-----ISAN-IFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp CCEEECTTSCCSC-----CCGG-GGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred CcEEECCCCCCCC-----CChh-hcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 3556666666653 3333 336777777777777777 4666 7777788888888888877 5677777778
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|++|+|++|.|+. +|. .|+.+++|++|+|++|+|+
T Consensus 294 ~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccC
Confidence 88888888887775 776 5777888888888888777
No 34
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=4.6e-16 Score=115.39 Aligned_cols=104 Identities=24% Similarity=0.216 Sum_probs=87.4
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.+++++|.+.. ++. .+ .+.|++|+|++|.+++..|. .|..+++|++|+|++|++++..+..|..+++
T Consensus 15 ~~l~~~~n~l~~-----iP~-~~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLAS-----VPA-GI--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSS-----CCS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCc-----cCC-Cc--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 345666666654 333 22 27899999999999998787 8999999999999999999766667889999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|++|+|++|+|++ +|...|..+++|++|+|++|++.
T Consensus 83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence 9999999999998 77656999999999999999998
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=7.3e-16 Score=122.23 Aligned_cols=92 Identities=25% Similarity=0.261 Sum_probs=44.6
Q ss_pred cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715 94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL 173 (199)
Q Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 173 (199)
..|..+++|++|++++|.+++..|. .+..+++|++|++++|++++..+..|+.+++|++|+|++|++++ ++...+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 173 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAF 173 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHh
Confidence 3344444444444444444443333 44445555555555555544333444455555555555555544 333234
Q ss_pred cCCCCCCEEeCcCCccC
Q 045715 174 AKLKNLEALDLSSNYYI 190 (199)
Q Consensus 174 ~~l~~L~~L~Ls~N~l~ 190 (199)
..+++|+.|++++|+++
T Consensus 174 ~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred cCccccCEEECCCCccc
Confidence 45555555555555554
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=8.5e-16 Score=122.71 Aligned_cols=113 Identities=23% Similarity=0.208 Sum_probs=87.8
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.++.|++++|.+.. +.. ...+++|++|++++|.++. +|. .+..+++|++|++++|++++..+..|..+
T Consensus 56 ~L~~L~L~~n~l~~-----~~~--~~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l 123 (290)
T 1p9a_G 56 RLTQLNLDRAELTK-----LQV--DGTLPVLGTLDLSHNQLQS-LPL----LGQTLPALTVLDVSFNRLTSLPLGALRGL 123 (290)
T ss_dssp TCCEEECTTSCCCE-----EEC--CSCCTTCCEEECCSSCCSS-CCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred CCCEEECCCCccCc-----ccC--CCCCCcCCEEECCCCcCCc-Cch----hhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence 34556666666554 212 2567778888888888875 566 78889999999999999997777889999
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
++|++|+|++|++++ +|...|..+++|+.|+|++|+|+ .+|..+|
T Consensus 124 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~ 168 (290)
T 1p9a_G 124 GELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT--ELPAGLL 168 (290)
T ss_dssp TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCS--CCCTTTT
T ss_pred CCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCC--ccCHHHh
Confidence 999999999999998 67667888999999999999998 5665543
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=5.6e-16 Score=134.64 Aligned_cols=93 Identities=26% Similarity=0.239 Sum_probs=46.4
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC-ccchh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG-SRTKQ 171 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~ 171 (199)
+..|.++++|++|++++|.+++..|. .|..+++|++|++++|++++..+..++.+++|++|++++|.+++ .+|.
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~- 147 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA- 147 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-
T ss_pred HHHhhchhhcCEeECCCCcccccChh----hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-
Confidence 34444455555555555555544444 45555555555555555544333445555555555555555543 2343
Q ss_pred hccCCCCCCEEeCcCCccC
Q 045715 172 GLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 172 ~~~~l~~L~~L~Ls~N~l~ 190 (199)
.++++++|++|++++|+++
T Consensus 148 ~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 148 YFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp GGGTCTTCCEEECCSSCCC
T ss_pred hHhhcCCCCEEEccCCcce
Confidence 4555555555555555554
No 38
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=115.10 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=92.1
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.+++++|.+.. ++.. + .+.|++|++++|.++. +|. .|..+++|++|+|++|++++..+..|..+++
T Consensus 13 ~~l~~~~~~l~~-----ip~~-~--~~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKG-I--PRDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCSS-----CCSC-C--CTTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEcCCCCCCc-----CCCC-C--CCCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 356666677764 4332 2 3689999999999996 677 8999999999999999999888888999999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
|++|+|++|.+++ +++..|..+++|++|+|++|+|+ .+|...
T Consensus 80 L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N~l~--~~~~~~ 121 (193)
T 2wfh_A 80 LLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS--VVPEGA 121 (193)
T ss_dssp CCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCCC--BCCTTT
T ss_pred CCEEECCCCccCE-eCHHHhCCCCCCCEEECCCCCCC--eeChhh
Confidence 9999999999999 66658999999999999999999 566543
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.1e-15 Score=121.32 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=68.7
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
++|++++|.+.. +.+..|..+++|++|++++|. ++...|. .|..+++|++|++++|++++..+..+..++
T Consensus 59 ~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 59 TILWLHSNVLAR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp CEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CEEECCCCccce-----eCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 455555555543 334556666666666666665 5554455 666667777777777777665566666677
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus 130 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 130 ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcccc-cCHhHhccCCCccEEECCCCccc
Confidence 77777777777766 45435666777777777777776
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=1.1e-15 Score=128.34 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=61.4
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|..+++|++|++++|++++..|..|..+++
T Consensus 302 ~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 302 EQLTLAQNEINK-----IDDNAFWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp CEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEEECCCCcccc-----cChhHhcCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhcccccc
Confidence 444444444433 3344455556666666666666554444 5556666666666666666555555666666
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|++|+|++|++++ +|...+..+++|+.|++++|+++
T Consensus 373 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 373 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcc
Confidence 6666666666665 44434556666666666666665
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=6.8e-16 Score=111.09 Aligned_cols=110 Identities=27% Similarity=0.266 Sum_probs=91.9
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
++++.|++++|.+.... + +..+..+++|++|++++|.+++. . .+..+++|++|++++|++++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~---~-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---L-EGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTB---C-CSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCChhH---H-HHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 45677888888876211 2 45678899999999999999985 4 8899999999999999999878888888
Q ss_pred CCCCCEEecCCCcCCCccc-hhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEGSRT-KQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip-~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|++++|.+++ ++ ...+..+++|++|++++|++++
T Consensus 87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc
Confidence 9999999999999988 43 1378899999999999999983
No 42
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.7e-16 Score=115.48 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=90.7
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.+++++|.++. ++. .+ ...|++|++++|.+++..+.. .|..+++|++|+|++|++++..|..|..+++
T Consensus 11 ~~l~~s~~~l~~-----ip~-~~--~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IPR-DI--PLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSS-----CCS-CC--CTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCc-----Ccc-CC--CCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 456777777754 433 22 238999999999999865530 3889999999999999999888999999999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
|++|+|++|++++ ++...|.++++|++|+|++|+|++ .+|+.
T Consensus 80 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~ 121 (192)
T 1w8a_A 80 IQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC-VMPGS 121 (192)
T ss_dssp CCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCE-ECTTS
T ss_pred CCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCe-eCHHH
Confidence 9999999999999 555579999999999999999993 33443
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=4.5e-16 Score=139.30 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=86.9
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.|++++|.+.. ..+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|..++.+++
T Consensus 445 ~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 445 RDLKLWLNMLEG-----EIPQELMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp CEEECCSSCCCS-----CCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred CEEECCCCcccC-----cCCHHHcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 444555554443 2355566777888888888888877777 7888888888888888888888888888888
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
|++|+|++|++++.+|. .+..+++|+.|++++|+++ +.+|..+
T Consensus 516 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-g~ip~~~ 558 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFN-GTIPAAM 558 (768)
T ss_dssp CCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEE-SBCCGGG
T ss_pred CCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccC-CcCChHH
Confidence 88888888888877776 7888888888888888887 5667654
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=9.7e-16 Score=128.70 Aligned_cols=117 Identities=28% Similarity=0.354 Sum_probs=104.0
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
...++.|++++|.+.. +.+..+..+++|++|++++|.+++..|. .|..+++|++|++++|++++..|..|.
T Consensus 274 ~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFA-----LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp TSCCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred ccCceEEEecCccccc-----cchhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhc
Confidence 4578899999999876 5577889999999999999999998887 899999999999999999988889999
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
.+++|++|+|++|++++..| ..+..+++|++|++++|+|+ .+|...
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~--~~~~~~ 390 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLK--SVPDGI 390 (455)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCS--CCCTTT
T ss_pred CcccCCEEECCCCcccccCh-hhccccccccEEECCCCccc--cCCHhH
Confidence 99999999999999998445 48999999999999999999 455443
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=4.9e-16 Score=126.13 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=95.1
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+..++.|++++|.+.. + +..+..+++|++|++++|.+++ +|. .+..+++|++|++++|++.+.+|..++
T Consensus 182 l~~L~~L~L~~n~l~~-----l-p~~l~~l~~L~~L~L~~N~l~~-l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS-----L-PASIANLQNLKSLKIRNSPLSA-LGP----AIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp STTCCEEEEEEECCCC-----C-CGGGGGCTTCCEEEEESSCCCC-CCG----GGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred CCCCCEEECcCCCcCc-----c-hHhhcCCCCCCEEEccCCCCCc-Cch----hhccCCCCCEEECcCCcchhhhHHHhc
Confidence 5566777777777652 3 4457788899999999999987 666 788899999999999999888888899
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
.+++|++|+|++|.+.+.+|. .+.++++|+.|+|++|++. +.+|..+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~-~~iP~~l 297 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNL-SRLPSLI 297 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTC-CCCCGGG
T ss_pred CCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCch-hhccHHH
Confidence 999999999999888887886 7889999999999998887 5677654
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=6.8e-16 Score=134.11 Aligned_cols=134 Identities=23% Similarity=0.145 Sum_probs=101.8
Q ss_pred CCceEecCCCCCeEEEe-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715 53 WVGVKCSATTRRVMQLS-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK 131 (199)
Q Consensus 53 w~gv~C~~~~~~v~~l~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 131 (199)
+..+.|.+.......-. -..++.|++++|.++. +.+..|.++++|++|++++|.+++..|. .|..+++|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~ 84 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLD 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChh----hccCccccC
Confidence 45677865321111111 2356888888888875 5577788888899999999988887777 888888899
Q ss_pred EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
+|++++|++++..|..|+.+++|++|++++|.+++ ++...+.++++|++|++++|++++..+|.
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred eeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc
Confidence 99999888887778888888888888888888888 54347888888888888888888555554
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=6.2e-16 Score=134.17 Aligned_cols=110 Identities=23% Similarity=0.211 Sum_probs=98.4
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++++|+|++|.++. +++..|.++++|++|+|++|++++..+. .|.++++|++|+|++|++++..+..|+.+
T Consensus 77 ~L~~L~Ls~N~i~~-----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 77 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCEEECCCCcCCC-----cChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 44899999999986 7788899999999999999999997666 89999999999999999997777789999
Q ss_pred CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715 152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
++|++|+|++|.+++ .+|. .+..+++|++|++++|+|++
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred cccCeeccccCccccCCCch-hhccchhhhhhcccCccccc
Confidence 999999999999986 2454 78899999999999999983
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.3e-15 Score=128.34 Aligned_cols=124 Identities=25% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715 53 WVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK 131 (199)
Q Consensus 53 w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 131 (199)
|..|.|.+.... +..--.++++.|+|++|.+.. +.+..|.++++|++|+|++|.+++..+. .|..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCC
Confidence 567888753211 111112456777777777765 4456667777777777777777776555 677777777
Q ss_pred EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715 132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186 (199)
Q Consensus 132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~ 186 (199)
+|+|++|+++...+..|..+++|++|+|++|+++. +|...|.++++|+.|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCC
Confidence 77777777775555556667777777777776665 4443444444444444443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=128.31 Aligned_cols=129 Identities=24% Similarity=0.252 Sum_probs=83.8
Q ss_pred CCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715 52 DWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL 130 (199)
Q Consensus 52 ~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L 130 (199)
.|..|.|...... +..--...++.|+|++|.+.. +.+..|..+++|++|+|++|.+++..|. .|..+++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L 82 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----LNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNL 82 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----ECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccC
Confidence 4678888753211 111112456777888777765 4456677777777777777777776666 67777777
Q ss_pred CEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 131 KMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 131 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+|++|+++...+..|..+++|++|+|++|.+++..+ ..|..+++|+.|++++|.++
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccc
Confidence 777777777775545556677777777777777766333 35666666777776666665
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.4e-15 Score=120.16 Aligned_cols=114 Identities=26% Similarity=0.302 Sum_probs=65.5
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.+++|++++|.+.. +.+..|..+++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|..+
T Consensus 29 ~l~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCE-----ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccEEECCCCcccc-----cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCC
Confidence 35556666665554 3344555566666666666666654444 55566666666666666655555556666
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLE 195 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip 195 (199)
++|++|++++|.+++ ++...+..+++|++|++++|.+++..+|
T Consensus 100 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 100 SSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp TTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred ccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCc
Confidence 666666666666655 3333455666666666666666543344
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1e-15 Score=112.35 Aligned_cols=113 Identities=20% Similarity=0.159 Sum_probs=86.9
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~ 148 (199)
+.+++.|++++|.+.. + ..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.. +..+
T Consensus 48 l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 48 FVNLEFLSLINVGLIS-----V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp GGGCCEEEEESSCCCC-----C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred CCCCCEEeCcCCCCCC-----h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcchhHHHH
Confidence 5667788888888765 2 5677788888888888888886666 6667888888888888887532 2677
Q ss_pred cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
..+++|+.|++++|.+++ +|. ..+..+++|+.|++++|.+. .+|.
T Consensus 117 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~ 164 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ--EAPD 164 (168)
T ss_dssp SSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC--BCCS
T ss_pred hcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh--hccc
Confidence 888888888888888887 553 36788888888888888887 5554
No 52
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=5.1e-15 Score=109.55 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=90.0
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.++++.|.+.. ++.. -.++|++|++++|.+++..+. .|..+++|++|++++|++++..+..|..+++
T Consensus 10 ~~l~~~~~~l~~-----~p~~---~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 10 TEIRCNSKGLTS-----VPTG---IPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TEEECCSSCCSS-----CCTT---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEecCCCCcc-----CCCC---CCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCc
Confidence 345555565654 3222 247899999999999986665 7899999999999999999777777899999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
|++|++++|.+++ +|...+..+++|+.|++++|+++ .+|..+
T Consensus 78 L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~ 119 (177)
T 2o6r_A 78 LTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK--SVPDGI 119 (177)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS--CCCTTT
T ss_pred cCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcce--EeCHHH
Confidence 9999999999998 66657899999999999999999 455544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-15 Score=121.17 Aligned_cols=92 Identities=26% Similarity=0.354 Sum_probs=62.8
Q ss_pred cccCCCCCCcEEECCCCccCc-cccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 94 SLFHPFEELQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
..+..+++|++|++++|.+++ ..|. .+..+++|++|++++|++++..|..+..+++|++|+|++|.+++ ++...
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~ 218 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFP 218 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGG
T ss_pred hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhh
Confidence 345556666666666666655 3455 66677777777777777776666677777777777777777776 44435
Q ss_pred ccCCCCCCEEeCcCCccC
Q 045715 173 LAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~l~ 190 (199)
+..+++|+.|++++|+++
T Consensus 219 ~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp GTTCTTCCEEECTTSCCC
T ss_pred ccCcccCCEeECCCCCCc
Confidence 677777777777777776
No 54
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.4e-16 Score=113.08 Aligned_cols=110 Identities=23% Similarity=0.208 Sum_probs=94.8
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
+.++.|++++|.+.... + +..+..+++|++|++++|.+++. . .+..+++|++|++++|++++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~---i-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK---I-EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTB---C-SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhh---H-HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 56788888888886211 2 45578899999999999999985 5 8999999999999999999878888888
Q ss_pred CCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|+|++|.+++ +|. ..+..+++|++|++++|++++
T Consensus 94 l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred CCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc
Confidence 9999999999999998 552 378999999999999999983
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.5e-16 Score=120.54 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=57.6
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCCCCCCEEEcCC-CCCCCCChhhhc
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSLRQLKMLNLGN-NDFNDNILPYLN 149 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~ 149 (199)
.++.|++++|.++. +++..|..+++|++|++++|. ++...+. .|..+++|++|++++ |++++..+..|.
T Consensus 32 ~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred cccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 45556666655553 333444555555555555554 4443333 444455555555554 454433333444
Q ss_pred CCCCCC-------------------------EEecCCC-cCCCccchhhccCCCCCC-EEeCcCCccCCCCcCCC
Q 045715 150 TLTSLT-------------------------TLNLRYN-SIEGSRTKQGLAKLKNLE-ALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 150 ~l~~L~-------------------------~L~Ls~N-~l~~~ip~~~~~~l~~L~-~L~Ls~N~l~~~~ip~~ 197 (199)
.+++|+ +|++++| .+++ +|...|..+++|+ .|++++|+++ .+|..
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~ 174 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT--SVQGY 174 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC--EECTT
T ss_pred CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc--ccCHh
Confidence 444444 5555555 4544 4443455566666 6666666665 44443
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=3.1e-16 Score=126.41 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
.++++|++++|.+.. ..+..|..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|..+..
T Consensus 101 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 101 TQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp TTCSEEEEEEECCEE-----ECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred CCCCEEECcCCeeCC-----cCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 345788888888863 3355677788888888888888777776 7777778888888888877777777777
Q ss_pred CC-CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LT-SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++ +|++|++++|.+++.+|. .+..++ |+.|++++|+++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEE
T ss_pred hhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCccc
Confidence 76 777777777777654554 454444 555555555554
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=3.2e-15 Score=129.88 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=105.4
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
+.++.|++++|.+.. +.+..|.++++|++|++++|.+++..|. .|..+++|++|+|++|++++..|..|++
T Consensus 32 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCC
Confidence 567899999999976 6677899999999999999999997787 8999999999999999999888999999
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
+++|++|+|++|.+++ ++...++++++|++|++++|.++++.+|..|
T Consensus 103 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 149 (606)
T 3vq2_A 103 LTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149 (606)
T ss_dssp CTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred cccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhH
Confidence 9999999999999998 6644799999999999999999976777644
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=4e-15 Score=120.51 Aligned_cols=128 Identities=27% Similarity=0.337 Sum_probs=100.8
Q ss_pred CCCCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715 50 CDDWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128 (199)
Q Consensus 50 c~~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~ 128 (199)
| .|..+.|...... +..--.+.++.|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|..++
T Consensus 33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~ 102 (332)
T 2ft3_A 33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLR 102 (332)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCT
T ss_pred c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcC
Confidence 5 7999999753211 111123577899999998875 5567788999999999999999987787 899999
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+|++|++++|+++ .+|..+. ++|++|++++|.+++ +|...+.++++|+.|++++|.++.
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcccc
Confidence 9999999999998 4555444 788999999999887 666568888899999998888863
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.3e-15 Score=113.45 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
.+++.|++++|.+.. ...+..+++|++|++++|.+++..+. .+..+++|++|++++|++++..+..+..
T Consensus 66 ~~L~~L~l~~n~~~~-------~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 66 HNIKDLTINNIHATN-------YNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp TTCSEEEEESCCCSC-------CGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred CCCCEEEccCCCCCc-------chhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 345556666664433 22445566666666666666554454 5556666666666666665555555666
Q ss_pred CCCCCEEecCCCc-CCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LTSLTTLNLRYNS-IEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|++|++++|. ++. +| .+..+++|+.|++++|+++
T Consensus 135 l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCC
T ss_pred CCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCc
Confidence 6666666666665 443 43 3555666666666666655
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=124.61 Aligned_cols=124 Identities=25% Similarity=0.288 Sum_probs=67.9
Q ss_pred CCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715 53 WVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK 131 (199)
Q Consensus 53 w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~ 131 (199)
|..|.|.+.... +..--...++.|+|++|.+.. +.+..|.++++|++|+|++|.+++..+. .|..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCC
Confidence 567888653211 111112345666777776654 4445566666666666666666665444 566666666
Q ss_pred EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715 132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186 (199)
Q Consensus 132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~ 186 (199)
+|+|++|+++...+..|..+++|++|+|++|.++. ++...|..+++|+.|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCC
Confidence 66666666664444455666666666666665554 3333344444444444443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-15 Score=122.31 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=80.5
Q ss_pred CCCCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc-------------
Q 045715 50 CDDWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI------------- 115 (199)
Q Consensus 50 c~~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~------------- 115 (199)
| .|.+|.|.....+ +..-..++++.|++++|.+.. ++...|..+++|++|++++|.++..
T Consensus 7 C-~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred e-CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 6 8999999763211 111112456677777776654 4444455666666666666665532
Q ss_pred ------------ccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEE
Q 045715 116 ------------YENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182 (199)
Q Consensus 116 ------------~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 182 (199)
+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 81 ~~L~Ls~n~i~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 155 (306)
T 2z66_A 81 KYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVL 155 (306)
T ss_dssp CEEECCSCSEEEEEE----EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEE
T ss_pred CEEECCCCccccChh----hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEE
Confidence 232 45566666666666666654333 356666777777777777766333 356677777777
Q ss_pred eCcCCccCCCCcCC
Q 045715 183 DLSSNYYIHGSLEG 196 (199)
Q Consensus 183 ~Ls~N~l~~~~ip~ 196 (199)
++++|.+++..+|.
T Consensus 156 ~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 156 KMAGNSFQENFLPD 169 (306)
T ss_dssp ECTTCEEGGGEECS
T ss_pred ECCCCccccccchh
Confidence 77777776323443
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=129.06 Aligned_cols=109 Identities=23% Similarity=0.213 Sum_probs=69.8
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++++|++++|.+.. +.+..|.++++|++|++++|.+++..|. .|..+++|++|++++|++++..+..++.+
T Consensus 53 ~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 53 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp SCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred CceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCcccccc
Confidence 34566666665554 4455566666677777777666665555 66666777777777776664444456667
Q ss_pred CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|++++|.+++ .+|. .+.++++|++|++++|+++
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred ccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc
Confidence 777777777777665 2454 5666777777777777766
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=4.3e-15 Score=130.76 Aligned_cols=110 Identities=30% Similarity=0.309 Sum_probs=64.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
..++.|++++|.+.. +.+..|.++++|++|++++|.+++..|. .|..+++|++|+|++|++++..+..|+.
T Consensus 25 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence 355666666666654 4444556666666666666666665555 5556666666666666665433334556
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|++|+|++|.+++ +++..|.++++|++|++++|.++
T Consensus 96 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCccc
Confidence 6666666666666655 44334555666666666666555
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=1.2e-14 Score=120.17 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEecCCC-----------CCeEEEecCCccceeccCCCccccccccccccccCCCCCCc
Q 045715 35 LPSWVGEDDGMPSDCCDDWVGVKCSATT-----------RRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ 103 (199)
Q Consensus 35 ~~~W~~~~~~~~~~~c~~w~gv~C~~~~-----------~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~ 103 (199)
+++|.. ..+||..|.+..|.... .....+.+.+++.+++++|.+.. +++..|..+++|+
T Consensus 3 ~~~~~~-----~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~-----l~~~~~~~l~~L~ 72 (390)
T 3o6n_A 3 VKPRQP-----EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----LPAALLDSFRQVE 72 (390)
T ss_dssp ----CC-----EECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESE-----ECTHHHHHCCCCS
T ss_pred cCCCCC-----ccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhh-----CChhHhcccccCc
Confidence 566776 56777445544442111 11224467888999999998876 6666788899999
Q ss_pred EEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEe
Q 045715 104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALD 183 (199)
Q Consensus 104 ~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 183 (199)
+|++++|.+++..+. .|..+++|++|++++|++++..|..|+.+++|++|+|++|.++. +|...|.++++|++|+
T Consensus 73 ~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLS 147 (390)
T ss_dssp EEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred EEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEE
Confidence 999999999987777 89999999999999999998888889999999999999999997 8875678999999999
Q ss_pred CcCCccC
Q 045715 184 LSSNYYI 190 (199)
Q Consensus 184 Ls~N~l~ 190 (199)
+++|+++
T Consensus 148 L~~n~l~ 154 (390)
T 3o6n_A 148 MSNNNLE 154 (390)
T ss_dssp CCSSCCC
T ss_pred CCCCccC
Confidence 9999998
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=3.9e-15 Score=119.80 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=82.8
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc--ccccchhhc--cCCCCCCEEEcCCCCCCC--CC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI--YENRAYDSF--GSLRQLKMLNLGNNDFND--NI 144 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~ 144 (199)
+++++|++++|.+.. +.+..|..+++|++|++++|++.+. .+. .+ ..+++|++|++++|++++ .+
T Consensus 149 ~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN-----FSCEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp TTCCEEEEESCSCCC-----CCTTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred CCCcEEEeeCCCCcc-----chHHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHH
Confidence 566777777777755 5556777888888888888887764 222 33 677888888888888873 12
Q ss_pred h-hhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715 145 L-PYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 145 p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
+ ..+..+++|++|+|++|++++..|...+..+++|+.|+|++|+|+ .+|..+|
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~ 273 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP 273 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC
T ss_pred HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc
Confidence 2 234577888888888888887544335666788888888888887 6676553
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=7.8e-15 Score=110.50 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=91.6
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~ 148 (199)
++.+++|++++|.+.. ..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|+ ++ .++ .+
T Consensus 87 l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~-~~~-~l 155 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTS-----DKIPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAIT-DIM-PL 155 (197)
T ss_dssp CTTCCEEEEECTTCBG-----GGSCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCC-CCG-GG
T ss_pred CCCCCEEEeECCccCc-----ccChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcc-ccH-hh
Confidence 4567899999999875 3356788999999999999999987777 89999999999999998 65 555 68
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+|.+
T Consensus 156 ~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC----
T ss_pred cCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCcccCC
Confidence 999999999999999998 66 58899999999999999873
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=7.2e-15 Score=108.77 Aligned_cols=105 Identities=24% Similarity=0.212 Sum_probs=49.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh--hhc
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--YLN 149 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~ 149 (199)
.++.|++++|.+.. + ..+..+++|++|++++|.+++..+. .+..+++|++|++++|+++ .+|. .+.
T Consensus 43 ~L~~L~Ls~N~l~~-----~--~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-----L--DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCSEEECCSSCCCE-----E--CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCEEECCCCCCCc-----c--cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 34445555554443 1 2344455555555555555543222 3344555555555555553 2333 444
Q ss_pred CCCCCCEEecCCCcCCCccchh---hccCCCCCCEEeCcCCcc
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQ---GLAKLKNLEALDLSSNYY 189 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~Ls~N~l 189 (199)
.+++|+.|++++|.++. +|.. .+..+++|+.|+++.|.+
T Consensus 111 ~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555555555543 3431 144455555555555443
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=1.4e-15 Score=117.74 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=64.6
Q ss_pred cccCCCCCCcEEECCCCccCccccccchhhccCCCCCC---EEEcCCC-CCCCCChhhhcCCCCCC-EEecCCCcCCCcc
Q 045715 94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK---MLNLGNN-DFNDNILPYLNTLTSLT-TLNLRYNSIEGSR 168 (199)
Q Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~i 168 (199)
..|..+++|++|++++|.+++ +| .|..+++|+ +|++++| ++++..+..|..+++|+ .|++++|.++. +
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i 171 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V 171 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E
T ss_pred HHhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c
Confidence 334444555555555555444 33 244455555 6666666 67655556688899999 99999999996 8
Q ss_pred chhhccCCCCCCEEeCcCCc-cCCCCcCCCC
Q 045715 169 TKQGLAKLKNLEALDLSSNY-YIHGSLEGNF 198 (199)
Q Consensus 169 p~~~~~~l~~L~~L~Ls~N~-l~~~~ip~~~ 198 (199)
|...+.. ++|+.|++++|+ ++ .+|...
T Consensus 172 ~~~~~~~-~~L~~L~L~~n~~l~--~i~~~~ 199 (239)
T 2xwt_C 172 QGYAFNG-TKLDAVYLNKNKYLT--VIDKDA 199 (239)
T ss_dssp CTTTTTT-CEEEEEECTTCTTCC--EECTTT
T ss_pred CHhhcCC-CCCCEEEcCCCCCcc--cCCHHH
Confidence 8755555 899999999995 98 555443
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.1e-14 Score=126.76 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=116.3
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCceEecCC--------CCCeEEEecCCccceeccCCCccccccccccccccCCCCCC
Q 045715 34 ILPSWVGEDDGMPSDCCDD---WVGVKCSAT--------TRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEEL 102 (199)
Q Consensus 34 ~~~~W~~~~~~~~~~~c~~---w~gv~C~~~--------~~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L 102 (199)
.+++|.. ..+||.. |.++.|+.. ...+..+.+.+++.+++++|.+.. +++..|..+++|
T Consensus 8 ~l~~~~~-----~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~-----lp~~~~~~l~~L 77 (597)
T 3oja_B 8 NVKPRQP-----EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----LPAALLDSFRQV 77 (597)
T ss_dssp ---CCCS-----EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE-----ECTHHHHHCCCC
T ss_pred cccCCCC-----CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC-----cCHHHHccCCCC
Confidence 4678876 5677633 555444320 112345567888999999998876 667778899999
Q ss_pred cEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEE
Q 045715 103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182 (199)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 182 (199)
++|+|++|.+++..|. .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++ +|...|.++++|++|
T Consensus 78 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTL 152 (597)
T ss_dssp SEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred cEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEE
Confidence 9999999999998887 89999999999999999998888889999999999999999998 777567999999999
Q ss_pred eCcCCccCC
Q 045715 183 DLSSNYYIH 191 (199)
Q Consensus 183 ~Ls~N~l~~ 191 (199)
+|++|.+++
T Consensus 153 ~Ls~N~l~~ 161 (597)
T 3oja_B 153 SMSNNNLER 161 (597)
T ss_dssp ECCSSCCCB
T ss_pred EeeCCcCCC
Confidence 999999983
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.5e-14 Score=116.92 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=79.3
Q ss_pred CCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715 52 DWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL 130 (199)
Q Consensus 52 ~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L 130 (199)
.|..+.|.+... .+..--.+.++.|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|..+++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCC
Confidence 899999975321 1111112466778888887765 4455677788888888888888876676 77777777
Q ss_pred CEEEcCCCCCCC---------------------CChhhhcCCCCCCEEecCCCcCCC--ccchhhccCCCCCCEEeCcCC
Q 045715 131 KMLNLGNNDFND---------------------NILPYLNTLTSLTTLNLRYNSIEG--SRTKQGLAKLKNLEALDLSSN 187 (199)
Q Consensus 131 ~~L~Ls~N~l~~---------------------~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~Ls~N 187 (199)
++|++++|+++. ..+..+..+++|++|++++|.++. ..+ ..+..+++|+.|++++|
T Consensus 103 ~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCC
Confidence 777777777652 222334455555555555555532 122 24555566666666666
Q ss_pred ccC
Q 045715 188 YYI 190 (199)
Q Consensus 188 ~l~ 190 (199)
.++
T Consensus 182 ~l~ 184 (330)
T 1xku_A 182 NIT 184 (330)
T ss_dssp CCC
T ss_pred ccc
Confidence 655
No 71
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.4e-14 Score=125.69 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=93.3
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.++.|+|++|.++. + +. +..+++|+.|+|++|.++. +|. .++.+++|+.|+|++|++++ +| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~-----l-p~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----L-CH-LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS-----C-CC-GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCC-----C-cC-ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 34678999998875 3 33 8899999999999999995 788 99999999999999999996 67 89999
Q ss_pred CCCCEEecCCCcCCCcc-chhhccCCCCCCEEeCcCCccCC
Q 045715 152 TSLTTLNLRYNSIEGSR-TKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
++|+.|+|++|.+++.. |. .+..+++|+.|+|++|+|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGG
T ss_pred CCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCC
Confidence 99999999999999943 65 89999999999999999993
No 72
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.57 E-value=1.3e-14 Score=118.08 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=73.1
Q ss_pred cCCCCCCcEEECCC-CccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715 96 FHPFEELQRLDLPM-NWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 174 (199)
+..+++|++|+|++ |.+++..+. .|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence 77788888888885 888886666 78888888888888888888778888888888888888888887 7764555
Q ss_pred CCCCCCEEeCcCCccC
Q 045715 175 KLKNLEALDLSSNYYI 190 (199)
Q Consensus 175 ~l~~L~~L~Ls~N~l~ 190 (199)
.++ |+.|+|++|+|.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 555 888888888886
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.57 E-value=1.8e-14 Score=116.45 Aligned_cols=85 Identities=26% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 179 (199)
++|++|++++|.+++..|. .+..+++|++|++++|++++..+..+..+++|++|+|++|+++. +|. .+..+++|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L 265 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYI 265 (330)
T ss_dssp TTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSC
T ss_pred ccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh-hhccCCCc
Confidence 4555666666666655455 66777777777777777776656667777777777777777775 665 56777777
Q ss_pred CEEeCcCCccC
Q 045715 180 EALDLSSNYYI 190 (199)
Q Consensus 180 ~~L~Ls~N~l~ 190 (199)
+.|++++|+|+
T Consensus 266 ~~L~l~~N~i~ 276 (330)
T 1xku_A 266 QVVYLHNNNIS 276 (330)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCcCC
Confidence 77777777777
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=121.23 Aligned_cols=111 Identities=24% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
.+++.|+|++|.+.. +.+..|.++++|++|+|++|.++...+. .|..+++|++|+|++|+++...+..|..
T Consensus 88 ~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 88 RHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp SSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred CCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhh
Confidence 345788888888765 5566777888888888888888875555 6777788888888888777555555666
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|+.|+|++|+..+.++...|.++++|+.|++++|+++
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 6666666666533333344444555555555555555554
No 75
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.2e-15 Score=106.90 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=91.0
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~ 148 (199)
+++++.|++++|.+.. + ..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++. .+..+
T Consensus 41 l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTS-----I--ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp CTTCCEEECTTSCCCC-----C--TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred cCCCcEEECcCCCCCC-----c--hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 5678899999998876 3 5678899999999999999997777 777899999999999999863 34789
Q ss_pred cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSS 186 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~ 186 (199)
..+++|++|++++|.+++ +|. ..+..+++|+.|++++
T Consensus 110 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 999999999999999998 554 4688999999999874
No 76
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=8.7e-15 Score=123.84 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
++|+|++|.+.. +++..|..+++|++|+|++|.+++..+. .|..+++|++|++++|++++..+..|..+++
T Consensus 83 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 153 (477)
T 2id5_A 83 RTLGLRSNRLKL-----IPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153 (477)
T ss_dssp CEEECCSSCCCS-----CCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred CEEECCCCcCCc-----cCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCC
Confidence 444444444433 3333444555555555555555554444 4555555555555555555444445555555
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
|+.|+|++|.+++ ++...+.++++|+.|++++|.++
T Consensus 154 L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCc
Confidence 5555555555555 44334555555555555555554
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=132.55 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=83.0
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh--hcC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNT 150 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~ 150 (199)
+++|+|++|.... .+.+..|.++++|++|+|++|.+++..|. .|..+++|++|+|++|++++.+|.. +..
T Consensus 50 L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 50 LQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred CeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccc
Confidence 3566666663321 24466778888888888888888887777 8888888888888888888766654 778
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|+|++|.+++..+...|+++++|++|++++|.+++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 88888888888888774443367888888888888888873
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=9.5e-15 Score=125.73 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=69.1
Q ss_pred ccccCCCCCCcEEECCCCccC-ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchh
Q 045715 93 MSLFHPFEELQRLDLPMNWFT-GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQ 171 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 171 (199)
+..+..+++|++|++++|.++ +.+|. .+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|+.
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 512 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDG 512 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchh----hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC-CCHH
Confidence 344556667777777777765 34565 67777777777777777776667777777778888888777777 4444
Q ss_pred hccCCCCCCEEeCcCCccCCCCcCC
Q 045715 172 GLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 172 ~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
.+.++++|+.|++++|+++ +..|.
T Consensus 513 ~~~~l~~L~~L~l~~N~~~-~~~~~ 536 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWD-CSCPR 536 (570)
T ss_dssp TTTTCTTCCEEECCSSCBC-CCTTT
T ss_pred HhhcccCCcEEEecCCccc-CCCcc
Confidence 6777777888888888777 34443
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=2e-14 Score=121.07 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=80.1
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|+|++|.+.. +.+..|..+++|++|+|++|.++...+. .|..+++|++|+|++|+++...+..|..+
T Consensus 100 ~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQ-----IEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCEEECCCCccCC-----cChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 45789999998875 5567788899999999999999886665 68888889999999988886555566666
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|++++|+..+.++...|.++++|+.|++++|+++
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 667777766643333355545666666666666666665
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=131.03 Aligned_cols=117 Identities=27% Similarity=0.290 Sum_probs=94.2
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccc-cccchhhccCCCCCCEEEcCCCCCCCCChhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIY-ENRAYDSFGSLRQLKMLNLGNNDFNDNILPY 147 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 147 (199)
-.+.++.|+|++|.++. +.+..|.++++|++|+|++|...+.+ |. .|..+++|++|+|++|++++..|..
T Consensus 22 lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEECCCCcCcccCHhH
Confidence 45677888888888875 55777888999999999998665555 55 7888899999999999998878888
Q ss_pred hcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCCCCc
Q 045715 148 LNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIHGSL 194 (199)
Q Consensus 148 ~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~i 194 (199)
|.++++|++|+|++|.+++.+|. ..+.++++|++|+|++|.+++..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 88999999999999998875554 137888999999999998885443
No 81
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=2.2e-14 Score=105.81 Aligned_cols=107 Identities=27% Similarity=0.292 Sum_probs=90.2
Q ss_pred CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715 50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128 (199)
Q Consensus 50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~ 128 (199)
| .|..+.|.+... .+..--...++.|+|++|.++. +.+..|..+++|++|+|++|++++..+. .|..++
T Consensus 9 C-~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~ 78 (170)
T 3g39_A 9 C-SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK-----LEPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLT 78 (170)
T ss_dssp E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred c-CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc-----cChhhhcCcccCCEEECCCCCcCccChh----hccCCC
Confidence 5 899999976321 1211113678999999999987 6678899999999999999999997666 789999
Q ss_pred CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
+|++|+|++|++++..+..|..+++|++|+|++|.++.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999999999997777789999999999999999987
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.55 E-value=7.5e-15 Score=126.04 Aligned_cols=118 Identities=20% Similarity=0.257 Sum_probs=100.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~ 148 (199)
+.++++|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|..+++|++|++++|++++ ..|..+
T Consensus 49 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINT-----IEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCCcCc-----cChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccchhhhh
Confidence 4566899999999876 6677899999999999999999997776 79999999999999999986 356788
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
+.+++|++|++++|.+.+.+|...+.++++|++|++++|.+++ .+|..
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~ 167 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQS 167 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTT
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhh
Confidence 9999999999999995555776679999999999999999983 34443
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=122.78 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=96.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
+.++.|++++|.+.. +.+..|..+++|++|++++|++++..|. .|..+++|++|+|++|+++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISE-----LWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCC-----CCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCCcccc-----cChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ecCcc--c
Confidence 678899999999876 5567889999999999999999998788 8999999999999999998 56665 8
Q ss_pred CCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|+|++|.+++ .+|. .++++++|++|++++|++++
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG
T ss_pred cCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch
Confidence 9999999999999987 4565 79999999999999999985
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=115.65 Aligned_cols=40 Identities=18% Similarity=0.039 Sum_probs=22.3
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG 114 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 114 (199)
++++++|++++|.+.. +.+..|..+++|++|+|++|++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA-----FSCEQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CSCCCEEEEECCSSCC-----CCTTSCCCCTTCCEEECCSCTTCH
T ss_pred ccCCCEEEeeCCCcch-----hhHHHhccCCCCCEEECCCCCCcc
Confidence 3444555555555543 334555566666666666666543
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=2.9e-14 Score=121.58 Aligned_cols=110 Identities=20% Similarity=0.122 Sum_probs=71.6
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc-CCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG-SLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++.|++++|.+.. +.+..+..+++|++|+|++|.+++..|. .+. .+++|++|+|++|.+++. + .+..+
T Consensus 122 L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l 190 (487)
T 3oja_A 122 KKNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVF 190 (487)
T ss_dssp CEEEECCSSCCCS-----GGGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred CCEEECCCCCCCC-----CCchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-c-ccccC
Confidence 3445555555543 3345566677777777777777776665 554 567777777777777643 2 23346
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
++|+.|+|++|.+++ +|+ .+..+++|+.|+|++|.|+ .+|..
T Consensus 191 ~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~--~lp~~ 232 (487)
T 3oja_A 191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLV--LIEKA 232 (487)
T ss_dssp TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCC--EECTT
T ss_pred CCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCc--ccchh
Confidence 777777777777777 665 4777777777777777777 35543
No 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2e-14 Score=106.39 Aligned_cols=114 Identities=21% Similarity=0.165 Sum_probs=94.0
Q ss_pred EEecCCccceeccCCCccccccccccccccCCC-CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh
Q 045715 67 QLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPF-EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL 145 (199)
Q Consensus 67 ~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 145 (199)
..+...++.|++++|.+.. + +. +..+ ++|++|++++|.+++. . .+..+++|++|++++|++++..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-----i-~~-~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-----I-EN-LGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-----C-CC-GGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEECS
T ss_pred cCCcCCceEEEeeCCCCch-----h-HH-hhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccCc
Confidence 4556777888999998875 3 22 3444 4999999999999985 4 79999999999999999996555
Q ss_pred hhhcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCCCCcCC
Q 045715 146 PYLNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 146 ~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~ip~ 196 (199)
..+..+++|++|+|++|.++. +|. ..+..+++|+.|++++|+++ .+|.
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~--~~~~ 130 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT--NKKH 130 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG--GSTT
T ss_pred chhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC--CcHh
Confidence 566899999999999999977 664 36889999999999999998 4554
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=4.1e-14 Score=122.21 Aligned_cols=108 Identities=26% Similarity=0.303 Sum_probs=95.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
+.++.|++++|.+.. +.+..|..+++|++|++++|.+++..|. .|..+++|++|+|++|+++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 577999999999986 6677899999999999999999998787 8999999999999999998 56655 7
Q ss_pred CCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|++|+|++|++++ .+|. .|+++++|++|++++|++++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc
Confidence 9999999999999988 2344 79999999999999999874
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=4.7e-14 Score=122.48 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
.++++|++++|.+.. +.+..|.++++|++|++++|.+++..|. .|..+++|++|++++|++++..+..++.
T Consensus 57 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 57 INLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp TTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred ccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhcc
Confidence 345677777777654 4456667777777777777777766666 6666777777777777766544555666
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|++|++++|.+++ ++...+..+++|++|++++|+++
T Consensus 128 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 128 QKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccc
Confidence 6666666666666665 32113444666666666666665
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=122.30 Aligned_cols=111 Identities=23% Similarity=0.233 Sum_probs=93.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~ 148 (199)
+.++++|++++|.+.. +.+..|..+++|++|++++|.++. +|. . .+++|++|++++|++++ .+|..|
T Consensus 44 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 44 LSKLRILIISHNRIQY-----LDISVFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp CTTCCEEECCSSCCCE-----EEGGGGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred cccccEEecCCCccCC-----cChHHhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhh
Confidence 4567899999999876 557789999999999999999996 775 4 79999999999999987 478899
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCC--CEEeCcCCcc--CCCCcCCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL--EALDLSSNYY--IHGSLEGN 197 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L--~~L~Ls~N~l--~~~~ip~~ 197 (199)
+.+++|++|++++|.+++ ..+..+++| +.|++++|.+ + +.+|+.
T Consensus 112 ~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~-~~~~~~ 159 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE-KEDPEG 159 (520)
T ss_dssp GGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS-SCCTTT
T ss_pred ccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc-cccccc
Confidence 999999999999999987 246677777 9999999999 4 344544
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=117.12 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=91.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhc
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLN 149 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 149 (199)
++++.|++++|.+.. +.+..|..+++|++|++++|.+++..+. .|..+++|++|++++|+++...+ ..+.
T Consensus 76 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 146 (353)
T 2z80_A 76 VNLQALVLTSNGINT-----IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFS 146 (353)
T ss_dssp TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred CCCCEEECCCCccCc-----cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhc
Confidence 345889999998875 5567788999999999999999985554 58899999999999999985433 3788
Q ss_pred CCCCCCEEecCCCc-CCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNS-IEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|++|++++|. +.. ++...+..+++|+.|++++|.++
T Consensus 147 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp TCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcC
Confidence 89999999999984 655 65557888999999999999988
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=5.3e-14 Score=113.85 Aligned_cols=85 Identities=28% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 179 (199)
++|++|++++|.+++..+. .+..+++|++|++++|++++..+..+..+++|+.|+|++|+++. +|. .+..+++|
T Consensus 193 ~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L 266 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA-GLPDLKLL 266 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTT----SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCT-TGGGCTTC
T ss_pred CCCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cCh-hhhcCccC
Confidence 3556666666666665444 56666666677777776666555566666667777777666664 665 56666667
Q ss_pred CEEeCcCCccC
Q 045715 180 EALDLSSNYYI 190 (199)
Q Consensus 180 ~~L~Ls~N~l~ 190 (199)
+.|++++|+|+
T Consensus 267 ~~L~l~~N~l~ 277 (332)
T 2ft3_A 267 QVVYLHTNNIT 277 (332)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 77777766666
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=3.4e-14 Score=114.51 Aligned_cols=109 Identities=20% Similarity=0.123 Sum_probs=64.7
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDNILPYLNTLT 152 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 152 (199)
+.|++++|.+.. +.+..+..+++|++|++++|.+++..+. .+ ..+++|++|++++|++++. + ....++
T Consensus 123 ~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~ 191 (317)
T 3o53_A 123 KNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFA 191 (317)
T ss_dssp EEEECCSSCCCS-----GGGBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCT
T ss_pred CEEECCCCCCCC-----ccchhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccc
Confidence 344444444443 3344555667777777777777765554 44 3566666666666666533 2 223466
Q ss_pred CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
+|++|+|++|++++ +|. .+..+++|+.|++++|+|+ .+|..
T Consensus 192 ~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~L~~N~l~--~l~~~ 232 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLV--LIEKA 232 (317)
T ss_dssp TCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCC--EECTT
T ss_pred cCCEEECCCCcCCc-chh-hhcccCcccEEECcCCccc--chhhH
Confidence 67777777777766 555 4666677777777777766 44543
No 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=9.9e-14 Score=121.80 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCccceeccCCCccccccccccccccCC-------CCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCCCCCC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHP-------FEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGNNDFN 141 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~-------l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~N~l~ 141 (199)
+.++.|++++|.+.. ++...+.. +++|++|+|++|.++. +|. .+. .+++|++|+|++|+++
T Consensus 457 ~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 457 SPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD----DFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp CCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCG----GGSTTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCCCCC-----cCHHHhccccccccccCCccEEECcCCcCCc-cCh----hhhhccCCCcCEEECCCCCCC
Confidence 344677777777763 33333332 2378888888888884 666 665 7888888888888888
Q ss_pred CCChhhhcCCCCCCEEec------CCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 142 DNILPYLNTLTSLTTLNL------RYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 142 ~~~p~~~~~l~~L~~L~L------s~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
+ +|..+..+++|+.|+| ++|++.+.+|. .+..+++|+.|+|++|+++ .+|..+
T Consensus 527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~--~ip~~~ 585 (636)
T 4eco_A 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIR--KVNEKI 585 (636)
T ss_dssp S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCC--BCCSCC
T ss_pred C-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcCC--ccCHhH
Confidence 6 7777778888888888 45667776775 7788888888888888885 667654
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=7.4e-14 Score=122.87 Aligned_cols=91 Identities=29% Similarity=0.295 Sum_probs=42.3
Q ss_pred ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715 95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174 (199)
Q Consensus 95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 174 (199)
.|.++++|++|++++|.+++..|. .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ++...+.
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 166 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELD 166 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHG
T ss_pred hhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhh
Confidence 344444455555554444443333 44444555555555555544444444445555555555555444 2222222
Q ss_pred --CCCCCCEEeCcCCccC
Q 045715 175 --KLKNLEALDLSSNYYI 190 (199)
Q Consensus 175 --~l~~L~~L~Ls~N~l~ 190 (199)
.+++|+.|++++|+++
T Consensus 167 ~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIK 184 (680)
T ss_dssp GGTTCEESEEECTTCCCC
T ss_pred ccccccccEEECCCCccc
Confidence 2344555555555554
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=2e-14 Score=115.56 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=47.3
Q ss_pred cCCccceeccCCCcccccccccccccc--CCCCCCcEEECCCCccCccccccchhhccCC-----CCCCEEEcCCCCCCC
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLF--HPFEELQRLDLPMNWFTGIYENRAYDSFGSL-----RQLKMLNLGNNDFND 142 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~~ 142 (199)
+.++++|++++|.+... + +..+ ..+++|++|++++|.+++. |. .+..+ ++|++|++++|++++
T Consensus 94 l~~L~~L~L~~n~l~~~----~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT----A-PPPLLEATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TSCCCEEEEEEEBCBSC----C-CCCSSSCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred cCCccEEEccCCcccch----h-HHHHHHhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 45667777777777641 1 2222 5666666666666666664 44 44333 455555555555554
Q ss_pred CChhhhcCCCCCCEEecCCCcCCC
Q 045715 143 NILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 143 ~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
..+..|+.+++|++|+|++|++.+
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chHHHhccCCCCCEEECCCCCcCc
Confidence 444445555555555555555433
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=8.5e-14 Score=120.24 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=92.2
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
+.+++++|.++. ++.. + .++|++|++++|.+++..|. .|..+++|++|+|++|++++..|..|..+++
T Consensus 34 ~~l~ls~~~L~~-----ip~~-~--~~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTH-----VPKD-L--PPRTKALSLSQNSISELRMP----DISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCS-----CCTT-S--CTTCCEEECCSSCCCCCCGG----GTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCCCCcc-----CCCC-C--CCCcCEEECCCCCccccChh----hhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 556666677764 3332 2 27999999999999997777 8999999999999999999888999999999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
|++|+|++|+++. +|. . .+++|++|++++|++++..+|+.
T Consensus 102 L~~L~Ls~N~l~~-lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~ 141 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISC-C--PMASLRHLDLSFNDFDVLPVCKE 141 (562)
T ss_dssp CCEEECTTSCCCE-ECS-C--CCTTCSEEECCSSCCSBCCCCGG
T ss_pred CCEEECCCCcCCc-cCc-c--ccccCCEEECCCCCccccCchHh
Confidence 9999999999997 887 3 89999999999999996666544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=2.8e-13 Score=108.02 Aligned_cols=101 Identities=34% Similarity=0.338 Sum_probs=57.0
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|++++|.+.. ...+..+++|++|++++|.+++. + .+..+++|+.|++++|++++. ..+..+
T Consensus 91 ~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l 155 (291)
T 1h6t_A 91 NLGWLFLDENKVKD-------LSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRL 155 (291)
T ss_dssp TCCEEECCSSCCCC-------GGGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred CCCEEECCCCcCCC-------ChhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccC
Confidence 34556666665543 22355566666666666666552 2 455556666666666666543 345555
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|++++|.+++ ++. +..+++|+.|++++|+++
T Consensus 156 ~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 156 TKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp TTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence 666666666666655 332 555666666666666655
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=5.1e-13 Score=107.35 Aligned_cols=62 Identities=35% Similarity=0.506 Sum_probs=30.1
Q ss_pred ccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 124 FGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 124 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+..+++|++|++++|++++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++++|+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCC
T ss_pred ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccC
Confidence 3444445555555555443 222 4455555555555555544 332 445555555555555554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=4.9e-13 Score=105.18 Aligned_cols=102 Identities=26% Similarity=0.318 Sum_probs=52.8
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+.+++.|++++|.+.. +.+ +..+++|++|++++|++++ +|. +.. ++|++|++++|++++ + ..+.
T Consensus 62 l~~L~~L~L~~N~i~~-----~~~--l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~-~~l~ 125 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-----LSP--LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T-DSLI 125 (263)
T ss_dssp CTTCCEEECCSSCCCC-----CGG--GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S-GGGT
T ss_pred CCCCCEEECCCCccCC-----Chh--hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C-hhhc
Confidence 3455666666666654 222 5566666666666666665 332 122 455555555555543 1 2345
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|+.|+|++|++++ ++ .+..+++|+.|++++|+++
T Consensus 126 ~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp TCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCC
T ss_pred CcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCc
Confidence 55555555555555554 33 3445555555555555554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.2e-13 Score=108.72 Aligned_cols=103 Identities=29% Similarity=0.337 Sum_probs=90.7
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
..++.|++++|.+.. ...+..+++|++|++++|.+++. . .+..+++|++|++++|++++..+ +..
T Consensus 112 ~~L~~L~L~~n~i~~-------~~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 112 KKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp TTCCEEECTTSCCCC-------CGGGGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CCCCEEECCCCcCCC-------ChhhcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcC
Confidence 345889999999876 24577899999999999999985 4 78999999999999999996544 899
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 177 l~~L~~L~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCB-CG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCC-Ch--hhccCCCCCEEECcCCcccC
Confidence 9999999999999998 66 48999999999999999874
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=4.2e-13 Score=121.49 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCccceeccCCCccccccccccccccC-------CCCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCCCCCC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFH-------PFEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGNNDFN 141 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~N~l~ 141 (199)
+.++.|+|++|.+.. ++...+. ++++|+.|+|++|+++. +|. .+. .+++|+.|+|++|+++
T Consensus 697 ~~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~----~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 697 SPISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD----DFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp CCCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCG----GGSTTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-chH----HhhhccCCCcCEEEeCCCCCC
Confidence 345778888887763 3333333 23388888888888884 666 665 7888888888888888
Q ss_pred CCChhhhcCCCCCCEEecCC------CcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715 142 DNILPYLNTLTSLTTLNLRY------NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 142 ~~~p~~~~~l~~L~~L~Ls~------N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
+ +|..+..+++|+.|+|++ |++.+.+|. .+.++++|+.|+|++|+|. .+|..++
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~--~Ip~~l~ 826 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR--KVDEKLT 826 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCC--BCCSCCC
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCCC--ccCHhhc
Confidence 6 677788888888888866 777776776 7888888888888888885 7776653
No 102
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.7e-13 Score=99.62 Aligned_cols=106 Identities=25% Similarity=0.249 Sum_probs=86.5
Q ss_pred CCCceEecCCC-CCeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715 52 DWVGVKCSATT-RRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL 130 (199)
Q Consensus 52 ~w~gv~C~~~~-~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L 130 (199)
....+.|.+.. ..+..--...++.|+|++|.+.. +.+..|..+++|++|+|++|++++..+. .|..+++|
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L 83 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITK-----LEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQL 83 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTC
T ss_pred CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccc-----cCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchh
Confidence 56667776522 12211123678999999999986 6678899999999999999999996555 67899999
Q ss_pred CEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715 131 KMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 131 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999999999997666679999999999999999987
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=7.3e-13 Score=106.40 Aligned_cols=101 Identities=25% Similarity=0.278 Sum_probs=66.2
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|++++|.+.. ...+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++..+ +..+
T Consensus 86 ~L~~L~L~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l 150 (308)
T 1h6u_A 86 KITELELSGNPLKN-------VSAIAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNISP--LAGL 150 (308)
T ss_dssp SCCEEECCSCCCSC-------CGGGTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CCCEEEccCCcCCC-------chhhcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcCcc--ccCC
Confidence 34556666666544 1245666667777777777665 33 46667777777777777764322 6677
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|++++|.+++ ++. +..+++|+.|++++|+++
T Consensus 151 ~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred CCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccC
Confidence 777777777777776 543 677777777777777776
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=4.7e-13 Score=114.07 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=91.9
Q ss_pred CccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
.++.|+|++|.+.. +.+..+. .+++|++|+|++|.+++. | .+..+++|+.|+|++|++++. |..+..
T Consensus 145 ~L~~L~Ls~N~l~~-----~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 212 (487)
T 3oja_A 145 RVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAFM-GPEFQS 212 (487)
T ss_dssp SEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred CCCEEECCCCCCCC-----cChHHHhhhCCcccEEecCCCccccc-c-----ccccCCCCCEEECCCCCCCCC-CHhHcC
Confidence 34789999999876 3355554 789999999999999985 4 345699999999999999964 445889
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCc
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~i 194 (199)
+++|+.|+|++|.+++ +|. .+..+++|+.|++++|.++.+.+
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCccEEEecCCcCcc-cch-hhccCCCCCEEEcCCCCCcCcch
Confidence 9999999999999998 887 79999999999999999973333
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=5.7e-14 Score=114.71 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=97.0
Q ss_pred CCCCCceEecCCCCCeEEE--e-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715 50 CDDWVGVKCSATTRRVMQL--S-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS 126 (199)
Q Consensus 50 c~~w~gv~C~~~~~~v~~l--~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 126 (199)
| ++..|.|.+. +++++ + ..++++|+|++|.++. +++..|.++++|++|+|++|.+.+.+|.. .|.+
T Consensus 9 C-~~~~v~C~~~--~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~ 77 (350)
T 4ay9_X 9 C-SNRVFLCQES--KVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSN 77 (350)
T ss_dssp E-ETTEEEEEST--TCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCS
T ss_pred e-eCCEEEecCC--CCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhc
Confidence 6 8899999753 33333 2 2568999999999986 77788999999999999999987766541 5677
Q ss_pred CCCCCE-EEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch-------------------------hhccCCC-CC
Q 045715 127 LRQLKM-LNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK-------------------------QGLAKLK-NL 179 (199)
Q Consensus 127 l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-------------------------~~~~~l~-~L 179 (199)
++++++ +.++.|+++...|..|..+++|++|++++|+++. +|. ..|..+. .+
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred chhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 777665 5566778876667777888888888888877765 332 1223332 46
Q ss_pred CEEeCcCCccCCCCcCCCCC
Q 045715 180 EALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 180 ~~L~Ls~N~l~~~~ip~~~f 199 (199)
+.|++++|+|+ .+|...|
T Consensus 157 ~~L~L~~N~i~--~i~~~~f 174 (350)
T 4ay9_X 157 VILWLNKNGIQ--EIHNSAF 174 (350)
T ss_dssp EEEECCSSCCC--EECTTSS
T ss_pred hhhcccccccc--CCChhhc
Confidence 67777777777 5555544
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=110.94 Aligned_cols=120 Identities=25% Similarity=0.243 Sum_probs=73.5
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
.++.+++|++++|.+...... .....+..+++|++|++++|.++. ++......+..+++|++|+|++|++++..|..+
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGL-MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHH-HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred cCCCCCEEECCCCCCccchhh-hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 356778888888876431100 112223567777777777777764 222000013566777777777777776666666
Q ss_pred cCC---CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCc
Q 045715 149 NTL---TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194 (199)
Q Consensus 149 ~~l---~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~i 194 (199)
..+ ++|++|+|++|+++. +|. .+. ++|+.|+|++|+|++.++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~-lp~-~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQ-VPK-GLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCS-CCS-CCC--SCCSCEECCSCCCCSCCC
T ss_pred HhccCcCcCCEEECCCCCCCc-hhh-hhc--CCCCEEECCCCcCCCCch
Confidence 555 577777777777775 665 342 677777777777774433
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=4.1e-13 Score=108.96 Aligned_cols=105 Identities=28% Similarity=0.375 Sum_probs=73.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+..++.|++++|.+.. +.+ +..+++|++|++++|.+++. + .+..+++|++|++++|++++. ..+.
T Consensus 220 ~~~L~~L~l~~n~l~~-----~~~--~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~ 284 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-----LSP--LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLN 284 (347)
T ss_dssp CTTCCEEECCSSCCCC-----CGG--GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred CCcCCEEEccCCccCC-----Ccc--hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhc
Confidence 3456778888887765 222 66777788888888877763 2 567777777777777777743 3466
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|+.|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCC
T ss_pred CCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccc
Confidence 77777777777777776333 36777777777777777777
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.7e-13 Score=122.07 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=97.8
Q ss_pred cHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecC----------Ccccee
Q 045715 8 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLN----------YTTKFN 77 (199)
Q Consensus 8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~----------~~~~L~ 77 (199)
.+.+..+|+++..+...+. . .....|.. ..+... .|.++.+.. .+++.+.+. .++.++
T Consensus 130 ~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~----~~~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~ 197 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSK----T-AKKQQPTG----DSTPSG-TATNSAVST--PLTPKIELFANGKDEANQALLQHKK 197 (727)
T ss_dssp --CCCHHHHHHHHHHHHHH----T-TC-----------------------------------------------------
T ss_pred cccchhhhhhhhhhccccc----C-cccCCCcC----CCCccc-cCCCceecC--CccceEEeeCCCCCcchhhHhhcCc
Confidence 4456789999998875554 2 23455754 244556 888887754 456666653 235677
Q ss_pred ccCCCcccccc----ccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715 78 YSYNSVYWEGV----LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153 (199)
Q Consensus 78 ls~N~~~~~~~----~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 153 (199)
|+.|.+..... ..+.+..|..++.|+.|+|++|.+.. +|. .+..+++|++|+|++|+++ .+|..|+.+++
T Consensus 198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ------------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred cCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 77777654221 12446778899999999999999996 676 7779999999999999999 78999999999
Q ss_pred CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
|++|+|++|.|+. +|. .|..+++|++|+|++|.|+ .+|..|
T Consensus 272 L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~--~lp~~~ 312 (727)
T 4b8c_D 272 LRVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVT--TLPWEF 312 (727)
T ss_dssp CCEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCC--CCCSST
T ss_pred CCEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCC--ccChhh
Confidence 9999999999995 887 7999999999999999998 778764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=7.5e-13 Score=115.66 Aligned_cols=84 Identities=35% Similarity=0.417 Sum_probs=49.7
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
+..+++|+.|+|++|.+++. . .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.|++ ++ .+..
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~ 195 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR--ALAG 195 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG--GGTT
T ss_pred ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch--HHcc
Confidence 44455555555555555553 2 45566666666666666664433 5666666666666666665 43 3666
Q ss_pred CCCCCEEeCcCCccC
Q 045715 176 LKNLEALDLSSNYYI 190 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~ 190 (199)
+++|+.|+|++|+++
T Consensus 196 l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 196 LKNLDVLELFSQECL 210 (605)
T ss_dssp CTTCSEEECCSEEEE
T ss_pred CCCCCEEEccCCcCc
Confidence 666666666666665
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=3.2e-13 Score=108.77 Aligned_cols=106 Identities=23% Similarity=0.304 Sum_probs=90.0
Q ss_pred CCccceeccCCCcccccccccccccc-CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLF-HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
..++.|++++|.+.. +.+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+.
T Consensus 144 ~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 144 SRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp SSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred CCCCEEECCCCCCCc-----ccHHHHhhccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhc
Confidence 345789999999876 334444 4789999999999999985 4 34468999999999999995 455589
Q ss_pred CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|+.|+|++|.++. +|. .+..+++|+.|++++|+++
T Consensus 212 ~l~~L~~L~L~~N~l~~-l~~-~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCCB
T ss_pred ccCcccEEECcCCcccc-hhh-HhhcCCCCCEEEccCCCcc
Confidence 99999999999999997 887 7899999999999999997
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.2e-12 Score=114.42 Aligned_cols=103 Identities=31% Similarity=0.319 Sum_probs=81.6
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
..++.|+|++|.+.. ...+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++. ..+..
T Consensus 87 ~~L~~L~Ls~N~l~~-------l~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~ 151 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-------LSSLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSR 151 (605)
T ss_dssp TTCCEEECCSSCCCC-------CTTSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGS
T ss_pred CCCCEEECcCCCCCC-------ChhhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcc
Confidence 345677777777654 2357778888888888888887 33 678888899999999998864 56888
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
+++|+.|+|++|.+++ +++ +..+++|+.|+|++|+|++
T Consensus 152 l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB
T ss_pred cCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCC
Confidence 8999999999999988 543 7888999999999998884
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=6.3e-13 Score=108.05 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCCCceEecCC-CC-CeEEE-ecCCccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc
Q 045715 50 CDDWVGVKCSAT-TR-RVMQL-SLNYTTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG 125 (199)
Q Consensus 50 c~~w~gv~C~~~-~~-~v~~l-~l~~~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 125 (199)
| .|..|.|.+. .. .+..+ .+.+++.|+|++ |.+.. +++..|..+++|++|+|++|+|++..|. .|.
T Consensus 8 C-~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~ 77 (347)
T 2ifg_A 8 H-GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVKSGLRFVAPD----AFH 77 (347)
T ss_dssp S-SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCSSCCCEECTT----GGG
T ss_pred c-cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCC-----cChhHhccccCCCEEECCCCccceeCHH----Hhc
Confidence 7 8999999764 11 12221 244679999996 99986 6678899999999999999999998887 899
Q ss_pred CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166 (199)
Q Consensus 126 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (199)
.+++|++|+|++|+|++..+..|..++ |+.|+|.+|.+..
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999999999999999976666676666 9999999999985
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.7e-12 Score=102.14 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=88.8
Q ss_pred ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715 69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148 (199)
Q Consensus 69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 148 (199)
.+..++.|++++|.+.. + ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ +|. +
T Consensus 39 ~l~~L~~L~l~~n~i~~-----l--~~l~~l~~L~~L~L~~N~i~~-~~-----~l~~l~~L~~L~L~~N~l~~-l~~-~ 103 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS-----L--AGMQFFTNLKELHLSHNQISD-LS-----PLKDLTKLEELSVNRNRLKN-LNG-I 103 (263)
T ss_dssp HHTTCSEEECTTSCCCC-----C--TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCSC-CTT-C
T ss_pred hcCcCcEEECcCCCccc-----c--hHHhhCCCCCEEECCCCccCC-Ch-----hhccCCCCCEEECCCCccCC-cCc-c
Confidence 46778899999998875 3 257889999999999999998 44 47889999999999999985 443 3
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG 192 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~ 192 (199)
.. ++|+.|+|++|.+++ ++ .+..+++|+.|++++|++++.
T Consensus 104 ~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC
T ss_pred cc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC
Confidence 33 899999999999998 65 589999999999999999843
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.39 E-value=3.2e-12 Score=103.64 Aligned_cols=103 Identities=25% Similarity=0.312 Sum_probs=75.6
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|++++|.+.. ...+..+++|++|++++|.+++. + .+..+++|++|++++|++++..+..+..+
T Consensus 244 ~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 244 QLTWLEIGTNQISD-------INAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp TCCEEECCSSCCCC-------CGGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCEEECCCCccCC-------ChhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 44677788777765 23467778888888888888773 3 67778888888888888877777778888
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|++++|++++ +++ +..+++|+.|++++|.|+
T Consensus 311 ~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence 888888888888877 443 667788888888888775
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=2.8e-12 Score=111.26 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=88.0
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~ 148 (199)
+.+++.|+|++|.+.. + |..+..+++|+.|+|++|.+++ +| .+..+++|++|+|++|++++.. |..+
T Consensus 462 l~~L~~L~Ls~N~l~~-----l-p~~~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRA-----L-PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp GTTCCEEECCSSCCCC-----C-CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred cccCcEeecCcccccc-----c-chhhhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 5678999999999974 4 5578899999999999999998 55 6899999999999999999876 9999
Q ss_pred cCCCCCCEEecCCCcCCCccchh---hccCCCCCCEEeC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQ---GLAKLKNLEALDL 184 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L 184 (199)
+.+++|+.|+|++|.+++ +|+. .+..+++|+.|++
T Consensus 530 ~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence 999999999999999998 4431 2344899999975
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=3.9e-13 Score=110.88 Aligned_cols=115 Identities=25% Similarity=0.290 Sum_probs=82.1
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccC----ccccccchhhccCCCCCCEEEcCCCCCCCC----
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT----GIYENRAYDSFGSLRQLKMLNLGNNDFNDN---- 143 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~---- 143 (199)
.++.|++++|.+...+...+.+..+..+++|++|+|++|.++ ..+|. .+..+++|++|+|++|++++.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHH
Confidence 345666666666543322233335677888888888888885 44565 778888888888888888754
Q ss_pred Chhhhc--CCCCCCEEecCCCcCCC----ccchhhc-cCCCCCCEEeCcCCccCC
Q 045715 144 ILPYLN--TLTSLTTLNLRYNSIEG----SRTKQGL-AKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 144 ~p~~~~--~l~~L~~L~Ls~N~l~~----~ip~~~~-~~l~~L~~L~Ls~N~l~~ 191 (199)
++..+. .+++|+.|+|++|.+++ .+|. .+ .++++|+.|++++|++++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCc
Confidence 455553 38888888888888887 4665 44 668888899999888874
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=8.4e-12 Score=105.56 Aligned_cols=96 Identities=23% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
+++++|++++|.+.. + .+..+++|++|++++|.+++. .+..+++|++|++++|++++ ++ ++.
T Consensus 64 ~~L~~L~Ls~n~l~~-----~---~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-----L---DLSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp TTCSEEECCSSCCSC-----C---CCTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred CCCCEEEccCCcCCe-----E---ccccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 445566666666554 2 145566666666666666652 24556666666666666664 22 566
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~ 188 (199)
+++|++|++++|++++ ++ +..+++|+.|++++|+
T Consensus 126 l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCS
T ss_pred CCcCCEEECCCCccce-ec---cccCCcCCEEECCCCC
Confidence 6666666666666666 42 5566666666666663
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=4.1e-12 Score=110.26 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=51.4
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
+++.|++++|.+.. ++ ..+++|++|++++|.+++ +|. +.. +|++|+|++|++++ +|. .+
T Consensus 81 ~L~~L~Ls~N~l~~-----ip----~~l~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l 139 (571)
T 3cvr_A 81 QITVLEITQNALIS-----LP----ELPASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LP 139 (571)
T ss_dssp TCSEEECCSSCCSC-----CC----CCCTTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CC
T ss_pred CCCEEECcCCCCcc-----cc----cccCCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cC
Confidence 35778888887763 32 235677777777777776 442 222 55566666665554 333 34
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|+.|+|++|.+++ +|. .+++|+.|+|++|+|+
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS
T ss_pred ccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCC
Confidence 555555555555554 442 2344445555555444
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=1.4e-11 Score=103.98 Aligned_cols=84 Identities=26% Similarity=0.326 Sum_probs=36.2
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
+..+++|+.|++++|.+++. + .+..+++|++|++++|++++..| +..+++|+.|++++|++++ ++ .+..
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~ 351 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDI-S-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN 351 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCC-G-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred ccCCCccCeEEcCCCcccCc-h-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence 33444444444444444442 1 23344444444444444443322 3344444444444444444 22 2344
Q ss_pred CCCCCEEeCcCCccC
Q 045715 176 LKNLEALDLSSNYYI 190 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~ 190 (199)
+++|+.|++++|+++
T Consensus 352 l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 352 LTNINWLSAGHNQIS 366 (466)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEeCCCCccC
Confidence 444444444444443
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.6e-11 Score=103.71 Aligned_cols=102 Identities=26% Similarity=0.286 Sum_probs=84.7
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
.++.|++++|.+.. + ..+..+++|++|++++|.+++.. .+..+++|++|++++|++++. ..+..+
T Consensus 288 ~L~~L~L~~n~l~~-----~--~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 288 ALTNLELNENQLED-----I--SPISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp TCSEEECCSSCCSC-----C--GGGGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccCeEEcCCCcccC-----c--hhhcCCCCCCEEECcCCcCCCch------hhccCccCCEeECCCCccCCc--hhhccC
Confidence 34566666666654 2 22678999999999999999854 367899999999999999964 578999
Q ss_pred CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
++|+.|++++|++++ +++ +..+++|+.|++++|++++
T Consensus 353 ~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 353 TNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCB-CGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCEEeCCCCccCc-cch--hhcCCCCCEEeccCCcccC
Confidence 999999999999999 443 7899999999999999985
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=3.2e-14 Score=107.15 Aligned_cols=106 Identities=25% Similarity=0.249 Sum_probs=88.3
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
+..+++|++++|.+.. ++ .+..+++|++|++++|.++. +|. .+..+++|++|++++|++++ +| .+.
T Consensus 47 l~~L~~L~ls~n~l~~-----l~--~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-----IS--SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp TTTCSEEECSEEEESC-----CC--CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred CCCCCEEECCCCCCcc-----cc--ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 5678889999988865 32 67788999999999999986 676 77778899999999999985 44 688
Q ss_pred CCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~ 190 (199)
.+++|++|++++|.+++ ++. ..+..+++|++|++++|+++
T Consensus 113 ~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence 88999999999999987 443 36888999999999999886
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=8.3e-13 Score=106.56 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=43.5
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC-CCCCC-ChhhhcCCCCCCEEecCCC-cCCCc-cchh
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDN-ILPYLNTLTSLTTLNLRYN-SIEGS-RTKQ 171 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~ 171 (199)
+..+++|++|++++|.+++..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~- 188 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV- 188 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-
T ss_pred HhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-
Confidence 44455555555555555544444 4555555555555555 34431 3334445555555555555 55432 222
Q ss_pred hccCCC-CCCEEeCcCC
Q 045715 172 GLAKLK-NLEALDLSSN 187 (199)
Q Consensus 172 ~~~~l~-~L~~L~Ls~N 187 (199)
.+..++ +|++|++++|
T Consensus 189 ~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 189 AVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHSCTTCCEEECCSC
T ss_pred HHHhcccCCCEEEeCCC
Confidence 344555 5555555555
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=4e-11 Score=104.03 Aligned_cols=94 Identities=27% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 150 (199)
++++.|++++|.+.. ++. +.. +|++|++++|.+++ +| . .+++|+.|++++|++++ +|. .
T Consensus 100 ~~L~~L~Ls~N~l~~-----ip~--l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L~Ls~N~l~~-lp~---~ 158 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-----LPE--LPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYINADNNQLTM-LPE---L 158 (571)
T ss_dssp TTCCEEECCSSCCSC-----CCC--CCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEEECCSSCCSC-CCC---C
T ss_pred CCCCEEEccCCCCCC-----cch--hhc--CCCEEECCCCcCCC-CC-----C--cCccccEEeCCCCccCc-CCC---c
Confidence 456788888887765 222 333 67777777777766 44 2 35566666666666664 333 3
Q ss_pred CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+++|++|+|++|.+++ +|. +. ++|+.|+|++|+|+
T Consensus 159 l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC
Confidence 4556666666666655 553 33 55666666666555
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=7.2e-13 Score=106.94 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCCCCcEEECCCCccCcc-ccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCC-cCCCc-cchhhcc
Q 045715 98 PFEELQRLDLPMNWFTGI-YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYN-SIEGS-RTKQGLA 174 (199)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~~~~ 174 (199)
.+++|++|++++|.+++. ++. .+..+++|++|++++|++++..+..++.+++|++|++++| .+++. ++. .+.
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~ 165 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLS 165 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHH
T ss_pred cCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHh
Confidence 455555555555555443 333 4455555555555555555444455555555555555555 34431 232 344
Q ss_pred CCCCCCEEeCcCC-ccC
Q 045715 175 KLKNLEALDLSSN-YYI 190 (199)
Q Consensus 175 ~l~~L~~L~Ls~N-~l~ 190 (199)
.+++|++|++++| .++
T Consensus 166 ~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HCTTCCEEECCCCTTCC
T ss_pred cCCCCCEEcCCCCCCcC
Confidence 5555555555555 444
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=5.5e-12 Score=103.33 Aligned_cols=118 Identities=24% Similarity=0.305 Sum_probs=68.4
Q ss_pred CccceeccCCCccccccccccccccCC-CCCCcEEECCCCccCccccccchhhccCC-CCCCEEEcCCCCCCCCChhhhc
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHP-FEELQRLDLPMNWFTGIYENRAYDSFGSL-RQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
.++.|+|++|.+...+...+ ...+.. .++|++|+|++|.+++..+......+..+ ++|++|++++|++++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 45667777776665322111 111112 26777777777777765443111123344 6777777877777765554433
Q ss_pred ----C-CCCCCEEecCCCcCCCc----cchhhccCCC-CCCEEeCcCCccCC
Q 045715 150 ----T-LTSLTTLNLRYNSIEGS----RTKQGLAKLK-NLEALDLSSNYYIH 191 (199)
Q Consensus 150 ----~-l~~L~~L~Ls~N~l~~~----ip~~~~~~l~-~L~~L~Ls~N~l~~ 191 (199)
. .++|++|+|++|.+++. ++. .+..++ +|+.|+|++|++++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCch
Confidence 3 25778888888777742 222 344554 78888888887763
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=1.6e-11 Score=100.16 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=76.4
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhcCCCCCCE-EecCCCcCCCccchhhccCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLNTLTSLTT-LNLRYNSIEGSRTKQGLAKLK 177 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~ 177 (199)
+++++|+|++|+|+.+.+. .|.++++|++|+|++|++.+.+| ..|.++++|+. +.++.|+++. ++++.|..++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP 104 (350)
T ss_dssp TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence 6799999999999986556 79999999999999999976555 46788988775 6677899998 7666899999
Q ss_pred CCCEEeCcCCccCCCCcCC
Q 045715 178 NLEALDLSSNYYIHGSLEG 196 (199)
Q Consensus 178 ~L~~L~Ls~N~l~~~~ip~ 196 (199)
+|++|++++|+++ .+|.
T Consensus 105 ~L~~L~l~~n~l~--~~~~ 121 (350)
T 4ay9_X 105 NLQYLLISNTGIK--HLPD 121 (350)
T ss_dssp TCCEEEEEEECCS--SCCC
T ss_pred ccccccccccccc--cCCc
Confidence 9999999999998 4444
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.21 E-value=1.3e-10 Score=98.19 Aligned_cols=83 Identities=25% Similarity=0.240 Sum_probs=55.2
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK 175 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 175 (199)
+..+++|++|++++|.+++ + .+..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~ 231 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-L------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTP 231 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-C------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTT
T ss_pred cccCCcCCEEECCCCccce-e------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccc
Confidence 4456666777777776666 2 245566677777777777653 26667777777777777777 55 566
Q ss_pred CCCCCEEeCcCCccCCC
Q 045715 176 LKNLEALDLSSNYYIHG 192 (199)
Q Consensus 176 l~~L~~L~Ls~N~l~~~ 192 (199)
+++|+.|++++|++++.
T Consensus 232 l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CTTCSEEECCSSCCSCC
T ss_pred cCCCCEEEeeCCcCCCc
Confidence 77777777777777743
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=8.7e-12 Score=102.78 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=78.4
Q ss_pred CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc-----cccccchhhccCCCCCCEEEcCCCCCC----
Q 045715 71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG-----IYENRAYDSFGSLRQLKMLNLGNNDFN---- 141 (199)
Q Consensus 71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~l~~L~~L~Ls~N~l~---- 141 (199)
+.++.|++++|.+...+...+ ...+..+++|++|++++|.++. ..+. .+..+++|++|+|++|+++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHH
Confidence 455666667766653222101 1345567788888888888772 2343 5677888888888888885
Q ss_pred CCChhhhcCCCCCCEEecCCCcCCCc----cchhhc--cCCCCCCEEeCcCCccC
Q 045715 142 DNILPYLNTLTSLTTLNLRYNSIEGS----RTKQGL--AKLKNLEALDLSSNYYI 190 (199)
Q Consensus 142 ~~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~--~~l~~L~~L~Ls~N~l~ 190 (199)
..+|..+..+++|+.|+|++|.+++. ++. .+ +.+++|+.|+|++|.++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCC
Confidence 45677778888888888888888763 343 45 34888888888888887
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=2.6e-13 Score=102.13 Aligned_cols=87 Identities=26% Similarity=0.377 Sum_probs=78.7
Q ss_pred ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715 95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174 (199)
Q Consensus 95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 174 (199)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence 67889999999999999998 55 6788999999999999999 678878888999999999999998 66 488
Q ss_pred CCCCCCEEeCcCCccCC
Q 045715 175 KLKNLEALDLSSNYYIH 191 (199)
Q Consensus 175 ~l~~L~~L~Ls~N~l~~ 191 (199)
.+++|++|++++|++++
T Consensus 113 ~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHHSSEEEESEEECCC
T ss_pred cCCCCCEEECCCCcCCc
Confidence 89999999999999983
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.15 E-value=2.9e-10 Score=96.04 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=55.1
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 151 (199)
++++|++++|.+.. ++ .|..+++|++|++++|++++ +|. .+ .+|++|++++|++++ +| .++.+
T Consensus 132 ~L~~L~L~~n~l~~-----lp--~~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l 194 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-----LP--ELQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNL 194 (454)
T ss_dssp TCCEEECCSSCCSS-----CC--CCTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCEEECcCCCCCC-----Cc--ccCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCC
Confidence 44566666666553 22 36677777777777777776 443 21 245555555555553 33 34444
Q ss_pred CCCCEEecCCCcCCC-------------------ccchhhccCCCCCCEEeCcCCccC
Q 045715 152 TSLTTLNLRYNSIEG-------------------SRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 152 ~~L~~L~Ls~N~l~~-------------------~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
++|++|++++|.+++ .+| .+..+++|+.|++++|+++
T Consensus 195 ~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCC
Confidence 444444444444433 144 2556666666666666666
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=1.1e-11 Score=103.96 Aligned_cols=119 Identities=24% Similarity=0.164 Sum_probs=75.2
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC-
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT- 150 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 150 (199)
.++.|++++|.+...+...+........++|++|++++|.+++.........+..+++|++|++++|++++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 3455666666554322211211122233577777777777765421101115667788888888888887554444432
Q ss_pred ----CCCCCEEecCCCcCCC----ccchhhccCCCCCCEEeCcCCccCC
Q 045715 151 ----LTSLTTLNLRYNSIEG----SRTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 151 ----l~~L~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
.++|++|+|++|.+++ .+|. .+..+++|+.|++++|++++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCH
Confidence 6788899999988885 4665 67778889999999998873
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=3e-11 Score=98.89 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=88.2
Q ss_pred CccceeccCCCccccccccccccccCCCC-CCcEEECCCCccCccccccchhhccCC-----CCCCEEEcCCCCCCCCCh
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFE-ELQRLDLPMNWFTGIYENRAYDSFGSL-----RQLKMLNLGNNDFNDNIL 145 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p 145 (199)
+++.|++++|.+...+...+ ...|..++ +|++|+|++|.+++..+. .+..+ ++|++|+|++|++++..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCCcCChHHH
Confidence 47889999999876332111 15677888 899999999999987666 55554 899999999999997777
Q ss_pred hhhc----CC-CCCCEEecCCCcCCCccchhh----ccC-CCCCCEEeCcCCccCC
Q 045715 146 PYLN----TL-TSLTTLNLRYNSIEGSRTKQG----LAK-LKNLEALDLSSNYYIH 191 (199)
Q Consensus 146 ~~~~----~l-~~L~~L~Ls~N~l~~~ip~~~----~~~-l~~L~~L~Ls~N~l~~ 191 (199)
..+. .+ ++|++|+|++|.+++ .+... +.. .++|++|+|++|.+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 6544 44 899999999999988 44323 334 3699999999999984
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.11 E-value=5.9e-10 Score=94.13 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=54.6
Q ss_pred ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715 95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174 (199)
Q Consensus 95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 174 (199)
.+..+++|++|++++|.+++ +|. . .++|++|++++|+++ .+| .++.+++|++|++++|++++ +|. .
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~----~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~-~-- 255 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPD----L---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-L-- 255 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCC----C---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS-C--
T ss_pred cccCCCCCCEEECCCCcCCc-CCC----C---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc-c--
Confidence 46677777777777777776 443 2 246777777777776 455 37777888888888888877 654 2
Q ss_pred CCCCCCEEeCcCCccC
Q 045715 175 KLKNLEALDLSSNYYI 190 (199)
Q Consensus 175 ~l~~L~~L~Ls~N~l~ 190 (199)
+++|+.|++++|+++
T Consensus 256 -~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLT 270 (454)
T ss_dssp -CTTCCEEECCSSCCS
T ss_pred -ccccCEEECCCCccc
Confidence 356666666666666
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.08 E-value=1.5e-11 Score=103.15 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=27.2
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc----ccccchhhccCCCCCCEEEcCCCCC
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI----YENRAYDSFGSLRQLKMLNLGNNDF 140 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l 140 (199)
+.|++++|.+...+...+.+..+..+++|++|++++|.++.. ++. .+..+++|++|++++|.+
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAGNEL 296 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCTTCCEEECTTCCC
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH----HHhhCCCcceEECCCCCC
Confidence 445555554443222222222223345555555555555542 222 333344444444444444
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=6.5e-10 Score=97.38 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 179 (199)
++|+.|++++|.+++ +|. .+++|+.|++++|+++ .+|. .+++|+.|+|++|+++. +|. .+.++++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPE-SLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCG-GGGGSCTT
T ss_pred CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCH-HHhhcccc
Confidence 567777777777776 443 3467888888888887 3554 56788999999999985 886 78889999
Q ss_pred CEEeCcCCccCC
Q 045715 180 EALDLSSNYYIH 191 (199)
Q Consensus 180 ~~L~Ls~N~l~~ 191 (199)
+.|+|++|++++
T Consensus 287 ~~L~L~~N~l~~ 298 (622)
T 3g06_A 287 TTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSCCCCH
T ss_pred CEEEecCCCCCC
Confidence 999999998873
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.06 E-value=1.5e-11 Score=97.01 Aligned_cols=81 Identities=25% Similarity=0.288 Sum_probs=57.8
Q ss_pred CCCCCCcEEECCCCccCcc--ccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC--CCCEEecCCCcCCCccch--
Q 045715 97 HPFEELQRLDLPMNWFTGI--YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT--SLTTLNLRYNSIEGSRTK-- 170 (199)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~ip~-- 170 (199)
.++++|+.|+|++|++++. +|. .+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence 3577888888888888873 344 566788888888888888754 2333333 788888888888775552
Q ss_pred ----hhccCCCCCCEEe
Q 045715 171 ----QGLAKLKNLEALD 183 (199)
Q Consensus 171 ----~~~~~l~~L~~L~ 183 (199)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 1366788888776
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=1.5e-09 Score=95.16 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=54.2
Q ss_pred CCCcEEECCCCccCccccccchhhcc--------------CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFG--------------SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE 165 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~--------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 165 (199)
++|+.|++++|.+++ +|.. ...+. .+++|+.|++++|++++ +| ..+++|+.|+|++|.|+
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCCC-CCCc-cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 666777777777665 3320 00111 12567777777777774 44 44567788888888877
Q ss_pred CccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715 166 GSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197 (199)
Q Consensus 166 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~ 197 (199)
. +|. .+++|+.|+|++|+|+ .+|..
T Consensus 255 ~-lp~----~~~~L~~L~Ls~N~L~--~lp~~ 279 (622)
T 3g06_A 255 S-LPM----LPSGLLSLSVYRNQLT--RLPES 279 (622)
T ss_dssp C-CCC----CCTTCCEEECCSSCCC--SCCGG
T ss_pred c-CCc----ccccCcEEeCCCCCCC--cCCHH
Confidence 6 664 4677888888888887 56654
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=7.2e-11 Score=97.37 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=79.5
Q ss_pred cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Chhhhc
Q 045715 74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLN 149 (199)
Q Consensus 74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~ 149 (199)
+.|+|++|.+...+...+........+.|+.|+|++|.++..........+..+++|++|+|++|+++.. ++..+.
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 6778888887654432221111135678999999999887532221111457788899999999998642 244566
Q ss_pred CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 150 TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 150 ~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..++|++|+|++|.|+.. +.. .+...++|++|+|++|.|+
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCC
Confidence 778899999999999762 222 3556788999999999987
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=3.1e-09 Score=85.78 Aligned_cols=92 Identities=20% Similarity=0.193 Sum_probs=78.9
Q ss_pred CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCC-EEecCCCcCCCccchhhccCCC
Q 045715 99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT-TLNLRYNSIEGSRTKQGLAKLK 177 (199)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~ 177 (199)
+++|+.++|++|.++.+.+. .|.++.+|+.++|++| ++...+..|.++++|+ .+++.+ .++. |+...|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCc
Confidence 67899999999999986666 8999999999999998 7766667899999999 999988 7776 7777899999
Q ss_pred CCCEEeCcCCccCCCCcCCCCC
Q 045715 178 NLEALDLSSNYYIHGSLEGNFF 199 (199)
Q Consensus 178 ~L~~L~Ls~N~l~~~~ip~~~f 199 (199)
+|+.++++.|.++ .|+...|
T Consensus 298 ~L~~l~l~~n~i~--~I~~~aF 317 (329)
T 3sb4_A 298 NLRYVLATGDKIT--TLGDELF 317 (329)
T ss_dssp TEEEEEECSSCCC--EECTTTT
T ss_pred cCCEEEeCCCccC--ccchhhh
Confidence 9999999999998 6766555
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=2.4e-09 Score=86.43 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=91.5
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC-EEEcCCCCCCCCChhhh
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK-MLNLGNNDFNDNILPYL 148 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~ 148 (199)
..+++.++++.|++.. ++...|.++++|+.+++++| ++.+.+. +|.++.+|+ .+++.+ .++...+..|
T Consensus 225 ~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred cCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchhhh
Confidence 5678999999988876 77889999999999999998 7876666 899999999 999998 7776667889
Q ss_pred cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeC
Q 045715 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL 184 (199)
Q Consensus 149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 184 (199)
.++++|+.++++.|.++. ++...|.++++|+.++.
T Consensus 294 ~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 999999999999999998 88778999999999874
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=4.2e-10 Score=83.89 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=86.4
Q ss_pred CCccceeccCC-CccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Ch
Q 045715 71 NYTTKFNYSYN-SVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----IL 145 (199)
Q Consensus 71 ~~~~~L~ls~N-~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p 145 (199)
..++.|+|++| .+...+...+ ...+...++|++|+|++|.+...-.......+...+.|++|+|++|.++.. +.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 45677888888 8876554323 344567789999999999998632211112556678999999999999743 34
Q ss_pred hhhcCCCCCCEEec--CCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 146 PYLNTLTSLTTLNL--RYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 146 ~~~~~l~~L~~L~L--s~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+...++|++|+| ++|.+... +.. .+...++|+.|+|++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 45677789999999 88999862 222 4566789999999999885
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.89 E-value=2.7e-10 Score=93.95 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=77.6
Q ss_pred CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCC----Chh
Q 045715 72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDN----ILP 146 (199)
Q Consensus 72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~ 146 (199)
.++.|+|++|.+...+.. .....+++|+.|+|++|.++..........+ ...+.|++|+|++|.++.. ++.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp CEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 345677777777653331 1122345788899999988764333000122 3467899999999998642 334
Q ss_pred hhcCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccCC
Q 045715 147 YLNTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~~ 191 (199)
.+..+++|++|+|++|.++.. ++. .+...++|+.|+|++|.|++
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCH
Confidence 457788999999999998752 232 56778899999999999873
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.83 E-value=4.9e-09 Score=82.56 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCCCCCceEecCCCCCeEEEecCCc------------------cceeccCCCccccccccccccccCCCCCCcE--EECC
Q 045715 49 CCDDWVGVKCSATTRRVMQLSLNYT------------------TKFNYSYNSVYWEGVLVLNMSLFHPFEELQR--LDLP 108 (199)
Q Consensus 49 ~c~~w~gv~C~~~~~~v~~l~l~~~------------------~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~--L~Ls 108 (199)
.| .|.|+.|+....+|+.+..++. ..+..++|..+. .++.+.|...+.|.. ++++
T Consensus 77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~----~LdLs~l~~dp~L~~~~l~l~ 151 (267)
T 3rw6_A 77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQ----ALDLKGLRSDPDLVAQNIDVV 151 (267)
T ss_dssp HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTT----EEECTTGGGCHHHHHTTCCCC
T ss_pred HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhcc----ccCHHHcCCCcchhhcCcccc
Confidence 46 8999999875556644433221 122233333322 133444555666666 7788
Q ss_pred CCccCccccccchhhccCCCCCCEEEcCCCCCCC--CChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715 109 MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND--NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186 (199)
Q Consensus 109 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~ 186 (199)
.|.... ++.........+++|+.|+|++|++++ .++..+..+++|+.|+|++|+|++.-....+..+ +|+.|+|++
T Consensus 152 ~N~~~~-~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~ 229 (267)
T 3rw6_A 152 LNRRSC-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDG 229 (267)
T ss_dssp TTSHHH-HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTT
T ss_pred CCHHHH-HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccC
Confidence 885432 222000023568899999999999997 3456778899999999999999983122233444 999999999
Q ss_pred CccCC
Q 045715 187 NYYIH 191 (199)
Q Consensus 187 N~l~~ 191 (199)
|.+++
T Consensus 230 Npl~~ 234 (267)
T 3rw6_A 230 NSLCD 234 (267)
T ss_dssp STTGG
T ss_pred CcCcc
Confidence 99983
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.67 E-value=3.5e-09 Score=91.39 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=68.4
Q ss_pred cCCCCCCcEEECCCCc--cCccccccchhhcc-CCCCCCEEEcCCCCCCCC-ChhhhcCCCCCCEEecCCCcCCCccchh
Q 045715 96 FHPFEELQRLDLPMNW--FTGIYENRAYDSFG-SLRQLKMLNLGNNDFNDN-ILPYLNTLTSLTTLNLRYNSIEGSRTKQ 171 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 171 (199)
+..+++|++|+++++. +++..+. .+. .+++|++|++++|++++. ++..+..+++|++|+|++|.+++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 4457788888886533 5554333 343 478899999999998753 3455678999999999999987643332
Q ss_pred hccCCCCCCEEeCcCCccCCC
Q 045715 172 GLAKLKNLEALDLSSNYYIHG 192 (199)
Q Consensus 172 ~~~~l~~L~~L~Ls~N~l~~~ 192 (199)
.+..+++|+.|+|++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 456789999999999999854
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=9.7e-09 Score=88.58 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=65.1
Q ss_pred cCCCCCCcEEECCCCccCccccccchhhccC-CCCCCEEEcCCCCCCCCChhhh-cCCCCCCEEecCCCcCCCccchhhc
Q 045715 96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGS-LRQLKMLNLGNNDFNDNILPYL-NTLTSLTTLNLRYNSIEGSRTKQGL 173 (199)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~~~~ 173 (199)
+..+++|+.|++++ .+++.... .+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++......+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HhhCCCccEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 45677888888877 56554443 4544 7889999999999875555444 6688999999999998653332234
Q ss_pred cCCCCCCEEeCcCCccC
Q 045715 174 AKLKNLEALDLSSNYYI 190 (199)
Q Consensus 174 ~~l~~L~~L~Ls~N~l~ 190 (199)
..+++|+.|++++|+++
T Consensus 503 ~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGSSEEEEESSCCB
T ss_pred HhCCCCCEEeeeCCCCC
Confidence 56889999999998875
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.1e-07 Score=70.60 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=73.3
Q ss_pred ccccCCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCCC----hhhhcCCCCCCEEecCCCcCCCc
Q 045715 93 MSLFHPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI----LPYLNTLTSLTTLNLRYNSIEGS 167 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ 167 (199)
...+...+.|++|+|++| .+...-.......+...++|++|+|++|++.... ...+...++|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667899999999999 8875322111225677899999999999997432 33455668999999999999862
Q ss_pred ----cchhhccCCCCCCEEeC--cCCccC
Q 045715 168 ----RTKQGLAKLKNLEALDL--SSNYYI 190 (199)
Q Consensus 168 ----ip~~~~~~l~~L~~L~L--s~N~l~ 190 (199)
+.. .+...++|++|+| ++|.|+
T Consensus 109 g~~~l~~-~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVE-ALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHH-GGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHH-HHHhCCCceEEEecCCCCCCC
Confidence 233 5777889999999 889987
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.39 E-value=1.1e-06 Score=73.09 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=70.3
Q ss_pred ccccccCCCCCCcEEECCCCccC-----ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715 91 LNMSLFHPFEELQRLDLPMNWFT-----GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE 165 (199)
Q Consensus 91 l~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 165 (199)
+....|.++++|+.+++.+|.+. .+.+. .|.++++|+.+.+. +.++......|.++++|+.+.|..| ++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 45667788888888888887765 33344 78888888888888 4466555667888889999998655 65
Q ss_pred CccchhhccCCCCCCEEeCcCCccC
Q 045715 166 GSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 166 ~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
. ++...|.++ +|+.+++.+|.+.
T Consensus 336 ~-I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 336 Q-INFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp E-ECTTSSSSS-CCCEEEECCSSCC
T ss_pred E-EcHHhCCCC-CCCEEEEcCCCCc
Confidence 5 666678888 8999999988876
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.35 E-value=4.4e-07 Score=78.18 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=45.7
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 149 (199)
++++++|+|++|.+...+.. .....+..+++|++|++++|.+++..+......+..+++|++|++++|.+.+ ++..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGK-WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSH-HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCCEEECccccccCcchh-HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 46778888888876543210 0122334566777777777776632111000134556667777777666543 333344
Q ss_pred CCCCCCEEec
Q 045715 150 TLTSLTTLNL 159 (199)
Q Consensus 150 ~l~~L~~L~L 159 (199)
.+++|+.|++
T Consensus 241 ~~~~L~~L~l 250 (592)
T 3ogk_B 241 AAANLEEFCG 250 (592)
T ss_dssp HCTTCCEEEE
T ss_pred hhhHHHhhcc
Confidence 4444444444
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.26 E-value=2.2e-07 Score=80.02 Aligned_cols=61 Identities=30% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCCCcEEECCCC-ccCcc-ccccchhhccCCCCCCEEEcCCCCCCCCChhhhc----CCCCCCEEecCCCc
Q 045715 99 FEELQRLDLPMN-WFTGI-YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN----TLTSLTTLNLRYNS 163 (199)
Q Consensus 99 l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~Ls~N~ 163 (199)
+++|++|++++| .++.. ++. .+..+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 455555555555 33221 111 223455555555555555443333222 34455555555554
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4.6e-07 Score=66.82 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=43.2
Q ss_pred CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhhcCC----CCCCEEecCCCc-CCCccchhhcc
Q 045715 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYLNTL----TSLTTLNLRYNS-IEGSRTKQGLA 174 (199)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~ip~~~~~ 174 (199)
+|+.||++++.++..--. .+..+++|++|+|+++. ++..--..++.+ ++|++|+|+++. ++.. -...+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGG
T ss_pred eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHh
Confidence 466666666665543222 45566666666666663 443333344443 246666666653 5431 112345
Q ss_pred CCCCCCEEeCcCC
Q 045715 175 KLKNLEALDLSSN 187 (199)
Q Consensus 175 ~l~~L~~L~Ls~N 187 (199)
.+++|++|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 5666666666654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=7.3e-06 Score=68.01 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=44.7
Q ss_pred hccCCCCCCEEEcCCCCCC-----CCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715 123 SFGSLRQLKMLNLGNNDFN-----DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 123 ~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+|..+++|+.+.+.+|.+. ......|.++++|+.+.|.+ .++. ++...|.++++|+.+.|..| ++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT-CC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc-cc
Confidence 6777777777777776654 23345677777888888773 4655 66667777888888887554 44
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=5.4e-07 Score=73.94 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=69.1
Q ss_pred cCCccceeccCCCccccccccccccccCCCCCCcEEECCC--CccCccc-cccchhhc--cCCCCCCEEEcCCCCCCCCC
Q 045715 70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM--NWFTGIY-ENRAYDSF--GSLRQLKMLNLGNNDFNDNI 144 (199)
Q Consensus 70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~--N~l~~~~-p~~~~~~~--~~l~~L~~L~Ls~N~l~~~~ 144 (199)
+++++.|++..+.+...+...+ ....+++|+.|+|+. |...+.. .......+ ..+++|++|+|.+|.++...
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l---~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDI---LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHH---HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHH---HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence 4556666666665544222111 112578888888753 2211110 00000022 24788999999988886433
Q ss_pred hhhhc---CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715 145 LPYLN---TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 145 p~~~~---~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~ 190 (199)
+..+. .+++|++|+|+.|.+.+. ++. .+..+++|+.|+|++|.|+
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence 33332 577899999999988762 222 2345788999999999876
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=3e-06 Score=62.40 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=63.2
Q ss_pred ccceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCC----CCCCEEEcCCCC-CCCCChh
Q 045715 73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSL----RQLKMLNLGNND-FNDNILP 146 (199)
Q Consensus 73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~ 146 (199)
++.||++++.++..|+ ..+..+++|+.|+|+++. +++.--. .+..+ ++|++|+|+++. ++..--.
T Consensus 63 L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLE----RLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp EEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHH----HHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred EeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHH----HHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4566777777776554 235689999999999995 6653222 56654 479999999985 8755556
Q ss_pred hhcCCCCCCEEecCCCc-CCC
Q 045715 147 YLNTLTSLTTLNLRYNS-IEG 166 (199)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~-l~~ 166 (199)
.+..+++|+.|+|+++. ++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 78889999999999986 544
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=7.3e-06 Score=61.44 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=76.8
Q ss_pred CccceeccCC-CccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh----h
Q 045715 72 YTTKFNYSYN-SVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL----P 146 (199)
Q Consensus 72 ~~~~L~ls~N-~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~ 146 (199)
.++.|+|++| .+...|...+ ...+..-+.|+.|+|++|.+...-.....+.+..-+.|++|+|++|.|+..-. .
T Consensus 42 ~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 3466777764 7766554322 34556678999999999999864322111245567889999999999974322 2
Q ss_pred hhcCCCCCCEEecCCCc---CCC----ccchhhccCCCCCCEEeCcCCcc
Q 045715 147 YLNTLTSLTTLNLRYNS---IEG----SRTKQGLAKLKNLEALDLSSNYY 189 (199)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~---l~~----~ip~~~~~~l~~L~~L~Ls~N~l 189 (199)
.+..-+.|+.|+|++|. +.. .+.. .+..-++|+.|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence 34555779999998653 332 1222 466678999999987764
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=1.4e-05 Score=65.51 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCC--CCCCCC-----Chhhh--cCCCCCCEEecCCCcCCCc
Q 045715 99 FEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGN--NDFNDN-----ILPYL--NTLTSLTTLNLRYNSIEGS 167 (199)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~ 167 (199)
+++|+.|+|..+.++..... .+. .+++|++|+|+. |...+. +...+ ..+++|++|+|++|.+...
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~----~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVE----DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHH----HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred CCCCcEEEEecCCCChHHHH----HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 67778888777766543222 343 688999998853 222111 11222 2578999999999988753
Q ss_pred cchhhc---cCCCCCCEEeCcCCccCC
Q 045715 168 RTKQGL---AKLKNLEALDLSSNYYIH 191 (199)
Q Consensus 168 ip~~~~---~~l~~L~~L~Ls~N~l~~ 191 (199)
.+. .+ ..+++|++|+|+.|.|++
T Consensus 268 ~~~-~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 268 VVE-MFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHH-HHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHH-HHHhCccCCCCCEEECCCCCCCh
Confidence 332 22 257899999999999874
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.76 E-value=6.1e-05 Score=52.56 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=44.0
Q ss_pred cEEECCCCccC-ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715 103 QRLDLPMNWFT-GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE 165 (199)
Q Consensus 103 ~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 165 (199)
..++.+++.++ ..+|. .+ ..+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 22665 33 346889999999998666677888889999999998875
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.00021 Score=58.16 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=61.8
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
...|.+...|+.+.+..+ ++..... .|..+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++. |....
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a 328 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYA 328 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT
T ss_pred ccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHH
Confidence 445666677777777543 4443333 6778888888888888777555667888888888888654 555 66667
Q ss_pred ccCCCCCCEEeCcCC
Q 045715 173 LAKLKNLEALDLSSN 187 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N 187 (199)
|.++.+|+.+.+..+
T Consensus 329 F~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 329 FKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCCCCCCTT
T ss_pred hhCCCCCCEEEECCc
Confidence 888888888877544
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.57 E-value=0.0002 Score=49.87 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC
Q 045715 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN 141 (199)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~ 141 (199)
++|++|+|++|+|+.+.+. .|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence 4699999999999996666 7889999999999999985
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.00071 Score=55.49 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=63.2
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
...|.+.+.|+.+.+. +.++.+-.. +|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++. |....
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~~a 352 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPESA 352 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCGGG
T ss_pred CcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhHhH
Confidence 4556677778877775 345554444 7888888888888764 55344567888888888888654 555 66667
Q ss_pred ccCCCCCCEEeCcCCc
Q 045715 173 LAKLKNLEALDLSSNY 188 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N~ 188 (199)
|.++++|+.+++.++.
T Consensus 353 F~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSR 368 (394)
T ss_dssp GTTCTTCCEEEESSCH
T ss_pred hhCCCCCCEEEECCce
Confidence 8888888888887764
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=0.00013 Score=54.56 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=67.0
Q ss_pred ccCCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCC----ChhhhcCCCCCCEEecCCCcCCCc--
Q 045715 95 LFHPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSIEGS-- 167 (199)
Q Consensus 95 ~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-- 167 (199)
.+.+-+.|+.|+|++| .+...--....+.+..-..|+.|+|++|++... +...+..-+.|+.|+|++|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4456688999999986 776431111223677788999999999999733 233445568899999999999862
Q ss_pred --cchhhccCCCCCCEEeCcCCc
Q 045715 168 --RTKQGLAKLKNLEALDLSSNY 188 (199)
Q Consensus 168 --ip~~~~~~l~~L~~L~Ls~N~ 188 (199)
+-. .+..-+.|+.|+|++|.
T Consensus 116 ~ala~-aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 116 ARLLR-STLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHH-HTTTTCCCSEEECCCCS
T ss_pred HHHHH-HHhhCCceeEEECCCCc
Confidence 222 46677889999998753
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.30 E-value=0.00049 Score=56.49 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=65.5
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
...|.....|+.+.+..+ ++.+-.. +|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..| ++. |+...
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a 361 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANA 361 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTT
T ss_pred cccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHH
Confidence 345666778888887654 5554444 7888899999998754 65455667889999999999876 665 77778
Q ss_pred ccCCCCCCEEeCcCC
Q 045715 173 LAKLKNLEALDLSSN 187 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N 187 (199)
|.++++|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 999999999988754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.21 E-value=0.001 Score=54.56 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=63.6
Q ss_pred ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715 91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK 170 (199)
Q Consensus 91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~ 170 (199)
+....|.++.+|+.++|..+ ++.+-.. +|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.++....
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---- 371 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---- 371 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----
T ss_pred cCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----
Confidence 55678889999999999865 6665555 8999999999999765 665567789999999999999876532
Q ss_pred hhccCCCCCCEEeCcCCccC
Q 045715 171 QGLAKLKNLEALDLSSNYYI 190 (199)
Q Consensus 171 ~~~~~l~~L~~L~Ls~N~l~ 190 (199)
..+.....|+.+.+..|.+.
T Consensus 372 ~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 372 NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp HTCBCCCCC-----------
T ss_pred hhhhccCCCCEEEeCCCCEE
Confidence 25777889999988877664
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.21 E-value=0.0013 Score=53.49 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=66.1
Q ss_pred ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715 93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG 172 (199)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 172 (199)
...|.....|+.+.+..+ ++.+-.. .|..+.+|+.+.+..+ ++......|.++.+|+.+.+.++.++. |+...
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~a 305 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRV 305 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTT
T ss_pred cccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhh
Confidence 345566677777777665 5554444 7778888888888654 443445578899999999999988887 77778
Q ss_pred ccCCCCCCEEeCcCC
Q 045715 173 LAKLKNLEALDLSSN 187 (199)
Q Consensus 173 ~~~l~~L~~L~Ls~N 187 (199)
|.++.+|+.+.|..+
T Consensus 306 F~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTCTTCCEEECCTT
T ss_pred hcCCCCCCEEEcCcc
Confidence 999999999999754
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.91 E-value=0.004 Score=50.99 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715 94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL 173 (199)
Q Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 173 (199)
..|.....++.+....+.+. .. .|..+.+|+.+.+..+ ++..-...|.++.+|+.++|..+ ++. |+...|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF 339 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EK----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSF 339 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TT----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTT
T ss_pred cccccccccceeccCceeec---cc----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhc
Confidence 34444555555554443322 12 6777888999998765 55445667889999999999754 665 777789
Q ss_pred cCCCCCCEEeCcCCccCCCCcCCCC
Q 045715 174 AKLKNLEALDLSSNYYIHGSLEGNF 198 (199)
Q Consensus 174 ~~l~~L~~L~Ls~N~l~~~~ip~~~ 198 (199)
.++.+|+.+.+..| ++ .|++.-
T Consensus 340 ~~c~~L~~i~lp~~-l~--~I~~~a 361 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-LR--KIGANA 361 (394)
T ss_dssp TTCTTCCEECCCTT-CC--EECTTT
T ss_pred cCCCCCCEEEECcc-cc--EehHHH
Confidence 99999999999876 55 454443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.12 E-value=9.9 Score=24.46 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=34.1
Q ss_pred CCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCC
Q 045715 109 MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYN 162 (199)
Q Consensus 109 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 162 (199)
+..++.+-.. +|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~----aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKS----LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSC----TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHH----HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445554444 7888888888888765 34345667888888888888654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.98 E-value=18 Score=23.23 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=34.1
Q ss_pred ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC
Q 045715 91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138 (199)
Q Consensus 91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N 138 (199)
+....|.++..|+.+.|..+ ++.+-.. +|.++.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~----aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDG----MFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTT----SSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHH----HHhccCCccEEEEcCC
Confidence 66778999999999998875 5554455 8999999999988764
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=24.19 E-value=29 Score=15.39 Aligned_cols=10 Identities=30% Similarity=1.162 Sum_probs=6.7
Q ss_pred CCCCCCCCceE
Q 045715 47 SDCCDDWVGVK 57 (199)
Q Consensus 47 ~~~c~~w~gv~ 57 (199)
...| +|.|..
T Consensus 5 dgac-swrgle 14 (23)
T 3ox7_P 5 DGAC-SWRGLE 14 (26)
T ss_pred Cccc-ccccch
Confidence 4557 898863
Done!