BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045716
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/221 (52%), Positives = 144/221 (65%), Gaps = 17/221 (7%)
Query: 4 ATFTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFD 60
A TF N C TVWPG L P+L TGFEL SRS AP+ WSGRFWGRT C+ D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 61 SSGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEG 119
++G +C TADCGS QV CNGAGA PPATL E T+ + G QD+YDVSLVDG+N+P+ V
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 120 SGRSGVAPP------LDVSCPNELRVQGG------CRSACEAFGNPEYCCSGSFNSPATC 167
G +G P ++ CP L+V+ C+SAC AFG+ +YCC+ N+P TC
Sbjct: 121 QGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETC 180
Query: 168 KPSMYSSIFKNACPKSYSYAYDDATSTFTCTAA-DYTITFC 207
P+ YS IF+ CP++YSYAYDD STFTC+ DY ITFC
Sbjct: 181 PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 221
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 217 bits (553), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 118/221 (53%), Positives = 141/221 (63%), Gaps = 17/221 (7%)
Query: 4 ATFTFVNKCDYTVWPGILGS---PKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFD 60
AT +F N C Y VWPG L S P+L +TGFEL S P W+GRFW RTGC+ D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 61 SSGHGSCATADCGSNQVECNGAGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEG 119
+SG CATADC S QV CNG GA PPATLAEF + G QDFYDVSLVDG+N+P+ V
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 120 SGRSG----VAPPLDVS--CPNELRVQG------GCRSACEAFGNPEYCCSGSFNSPATC 167
G +G + P +V+ CP+EL+ +G C SAC FG P+YCC+ N+P TC
Sbjct: 121 QGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETC 180
Query: 168 KPSMYSSIFKNACPKSYSYAYDDATSTFTCTAA-DYTITFC 207
P+ YS IF NACP +YSYAYDD TFTC +Y ITFC
Sbjct: 181 PPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 221
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 121/213 (56%), Gaps = 17/213 (7%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDSS 62
A FT VN+C +TVW + G +L +G S AP G + R W RTGC FD+S
Sbjct: 1 AVFTVVNQCPFTVWAASVPV----GGGRQLNRGESWRITAPAGTTAARIWARTGCKFDAS 56
Query: 63 GHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEGSG 121
G GSC T DCG ++C G G AP TLAE+ L + DF+D+SL+DG+N+P+ G
Sbjct: 57 GRGSCRTGDCGG-VLQCTGYGRAP-NTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDG 114
Query: 122 RSGV------APPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSSI 175
SG A ++ CP ELR G C +AC F EYCC GS + C P+ YS
Sbjct: 115 GSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGS--AANDCHPTNYSRY 172
Query: 176 FKNACPKSYSYAYDDATSTFTCTAA-DYTITFC 207
FK CP +YSY DDATSTFTC A +Y + FC
Sbjct: 173 FKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 123/209 (58%), Gaps = 17/209 (8%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQA-PTGWSGRFWGRTGCNFDSS 62
ATF +NKC YTVW SP G L G S + P + R WGRT C FD++
Sbjct: 1 ATFDILNKCTYTVWAA--ASP---GGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDAN 55
Query: 63 GHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEGSG 121
G G C T DC + +EC G G+ PP TLAEF L + D+ D+SLVDG+NIP+ + SG
Sbjct: 56 GRGKCETGDC-NGLLECQGYGS-PPNTLAEFALNQPNNLDYIDISLVDGFNIPM--DFSG 111
Query: 122 RSGVAPPLDVS--CPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIFKNA 179
G+ +D++ CP+EL+ GGC + C F EYCC+ + P +C P+ YS FK+
Sbjct: 112 CRGIQCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCT---DGPGSCGPTTYSKFFKDR 168
Query: 180 CPKSYSYAYDDATSTFTC-TAADYTITFC 207
CP +YSY DD TS FTC + +Y +TFC
Sbjct: 169 CPDAYSYPQDDKTSLFTCPSGTNYKVTFC 197
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 115/215 (53%), Gaps = 22/215 (10%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWS-GRFWGRTGCNFDSS 62
AT N C YTVW + G L +G + AP G R WGRT CNF+++
Sbjct: 1 ATIEVRNNCPYTVW----AASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAA 56
Query: 63 GHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGS-QDFYDVSLVDGYNIPIVVEGSG 121
G G+C T DCG ++C G G PP TLAE+ L S DF+D+SLVDG+NIP+ +
Sbjct: 57 GRGTCQTGDCGG-VLQCTGWGK-PPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTN 114
Query: 122 RSG-------VAPPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSS 174
SG ++ CP ELRV GGC + C FG +YCC+ C P+ +S
Sbjct: 115 PSGGKCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQ-----GPCGPTFFSK 169
Query: 175 IFKNACPKSYSYAYDDATSTFTCT--AADYTITFC 207
FK CP +YSY DD TSTFTC + +Y + FC
Sbjct: 170 FFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 204
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 116/211 (54%), Gaps = 19/211 (9%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDSS 62
ATF VN+C YTVW + + G +L +G S + G +G R WGRTGC+FD S
Sbjct: 1 ATFEIVNRCSYTVW-----AAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGS 55
Query: 63 GHGSCATADCGSNQVECNGAGAAPPATLAEFTLGS-GSQDFYDVSLVDGYNIPIVVEGS- 120
G G C T DCG + C G PP TLAEF L + DF+D+SLVDG+N+P+ +
Sbjct: 56 GRGRCQTGDCGG-VLSCTAYG-NPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTS 113
Query: 121 -GRSGVAPPLDVS--CPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIFK 177
G G+ D++ CP L+ GGC + C F +YCC+ C P+ YS FK
Sbjct: 114 GGCRGIRCAADINGQCPGALKAPGGCNNPCTVFKTDQYCCNS-----GACSPTDYSQFFK 168
Query: 178 NACPKSYSYAYDDATSTFTCTAA-DYTITFC 207
CP +YSY DD T+TFTC +Y + FC
Sbjct: 169 RNCPDAYSYPKDDQTTTFTCPGGTNYRVVFC 199
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 117/216 (54%), Gaps = 22/216 (10%)
Query: 3 AATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWS-GRFWGRTGCNFDS 61
+ F N C YTVW + G L++G S F AP G R WGRT CNFD
Sbjct: 1 SGVFEVHNNCPYTVW----AAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDG 56
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQ-DFYDVSLVDGYNIPI----V 116
+G G C T DCG +EC G G PP TLAE+ L S DF+D+S++DG+NIP+
Sbjct: 57 AGRGWCQTGDCGG-VLECKGWGK-PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPT 114
Query: 117 VEGSGR-SGVAPPLDVS--CPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYS 173
G G+ G+ +++ CP LRV GGC + C FG +YCC+ C P+ S
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCT-----QGPCGPTELS 169
Query: 174 SIFKNACPKSYSYAYDDATSTFTCTA--ADYTITFC 207
FK CP +YSY DD TSTFTCT+ DY + FC
Sbjct: 170 RWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 114/215 (53%), Gaps = 22/215 (10%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWS-GRFWGRTGCNFDSS 62
AT N C YTVW + G L +G + AP G R WGRTGCNF+++
Sbjct: 1 ATIEVRNNCPYTVW----AASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAA 56
Query: 63 GHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQ-DFYDVSLVDGYNIPIVVEGSG 121
G G+C T DCG ++C G G PP TLAE+ L S DF+D+SLVDG+NIP+ +
Sbjct: 57 GRGTCQTGDCGG-VLQCTGWG-KPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTK 114
Query: 122 RSG-------VAPPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSS 174
SG ++ CP L+V GGC + C FG +YCC + C P+ S
Sbjct: 115 PSGGKCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCC-----TQGPCGPTELSK 169
Query: 175 IFKNACPKSYSYAYDDATSTFTCT--AADYTITFC 207
FK CP +YSY DD TSTFTC + +Y + FC
Sbjct: 170 FFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 204
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG ++C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGRGICRTGDCG-GLLQCKRFGR-PPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQGG-CRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GG C AC F EYCC+ C P+ YS F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT-----TGKCGPTEYSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G +G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCGG-LLRCKRFGR-PPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQGG-CRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GG C AC F EYCC+ C P+ YS F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT-----TGKCGPTEYSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCG-GLLRCKRFGR-PPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQGG-CRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GG C AC F EYCC+ C P+ YS F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT-----TGKCGPTEYSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G +G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCGG-LLRCKRFGR-PPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQGG-CRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GG C AC F EYCC+ C P+ YS F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT-----TGKCGPTEYSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G +G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCGG-LLRCKRFGR-PPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQGG-CRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GG C AC F EYCC+ C P+ YS F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT-----TGKCGPTEYSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C YTVW G LD+ G +L G S + G +G + W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D+ D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCGG-LLRCKRFG-RPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQ-GGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GGC AC F EYCC + C P+ S F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGPTEXSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 4 ATFTFVNKCDYTVWPGI-LGSPKLDSTGFELQKGGSRSFQAPTGWSG-RFWGRTGCNFDS 61
ATF VN+C TVW G LD+ G +L G S + G +G + W RT C FD
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDD 60
Query: 62 SGHGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121
SG G C T DCG + C G PP TLAEF+L +D D+S + G+N+P+ +
Sbjct: 61 SGSGICKTGDCGG-LLRCKRFG-RPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFSPTT 118
Query: 122 R--SGVAPPLDV--SCPNELRVQ-GGCRSACEAFGNPEYCCSGSFNSPATCKPSMYSSIF 176
R GV D+ CP +L+ GGC AC F EYCC + C P+ S F
Sbjct: 119 RGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGPTEXSRFF 173
Query: 177 KNACPKSYSYAYDDATSTFTCTAADYTITFC 207
K CP ++SY D T+ +++Y +TFC
Sbjct: 174 KRLCPDAFSYVLDKPTTVTCPGSSNYRVTFC 204
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSG 63
A T N+C +TVWP + G EL G S S P S WGRTGC+FD +G
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRAG 60
Query: 64 HGSCATADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVE 118
G C T DCG + + C G A P T+AE ++ G+ + S + G+N+P+ ++
Sbjct: 61 KGRCQTGDCGGSSLTC-GGNPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLK 114
>pdb|3K2E|A Chain A, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K2E|B Chain B, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K31|A Chain A, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
pdb|3K31|B Chain B, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
Length = 296
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 70 ADCGSNQVECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPI 115
D G Q+ N A P TLA SG DF+ + + YN P+
Sbjct: 198 VDLGKQQIRVNAISAGPVRTLAS----SGISDFHYILTWNKYNSPL 239
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 134 PNELRVQGGCRSACEAFGNPE-YCCSGSFNSPATCKPS 170
P+ RV+ CRS E FG+ E C +G++ P CK S
Sbjct: 147 PSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 184
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 134 PNELRVQGGCRSACEAFGNPE-YCCSGSFNSPATCKPS 170
P+ RV+ CRS E FG+ E C +G++ P CK S
Sbjct: 1050 PSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 1087
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 134 PNELRVQGGCRSACEAFGNPE-YCCSGSFNSPATCKPS 170
P+ RV+ CRS E FG+ E C +G++ P CK S
Sbjct: 1050 PSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 1087
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 134 PNELRVQGGCRSACEAFGNPE-YCCSGSFNSPATCKPS 170
P+ RV+ CRS E FG+ E C +G++ P CK S
Sbjct: 25 PSGERVRYQCRSPYEMFGDEEVMCLNGNWTEPPQCKDS 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,181,432
Number of Sequences: 62578
Number of extensions: 340666
Number of successful extensions: 746
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 34
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)