Query 045716
Match_columns 283
No_of_seqs 164 out of 679
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1E-79 2.2E-84 555.1 17.3 202 5-207 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 6.3E-78 1.4E-82 543.1 17.2 202 6-208 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 2E-77 4.4E-82 542.6 16.9 201 6-208 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 4.4E-74 9.5E-79 516.2 3.7 198 10-208 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 5.7E-57 1.2E-61 389.3 14.0 151 6-207 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 1.9E-50 4.2E-55 346.8 14.1 149 6-208 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 3.5E-49 7.6E-54 339.7 13.5 148 6-206 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.7 0.00034 7.3E-09 61.2 10.8 36 86-121 72-111 (155)
9 cd09216 GH64-LPHase-like glyco 95.0 0.078 1.7E-06 52.0 7.5 108 5-121 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 91.6 0.35 7.6E-06 47.8 5.7 80 35-121 62-146 (369)
11 cd09214 GH64-like glycosyl hyd 48.9 7.8 0.00017 37.7 0.9 32 89-121 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 48.5 12 0.00027 36.3 2.2 22 170-191 276-299 (319)
13 cd09220 GH64-GluB-like glycosi 45.8 9.7 0.00021 37.8 1.1 23 169-191 320-344 (369)
14 PHA03094 dUTPase; Provisional 40.7 30 0.00064 29.6 3.1 30 30-59 35-70 (144)
15 cd09216 GH64-LPHase-like glyco 39.1 14 0.00031 36.5 1.0 22 170-191 310-333 (353)
16 PF06282 DUF1036: Protein of u 34.2 49 0.0011 27.3 3.4 39 3-41 3-44 (115)
17 TIGR03096 nitroso_cyanin nitro 31.5 95 0.0021 26.8 4.7 43 4-52 71-115 (135)
18 cd00407 Urease_beta Urease bet 29.2 1E+02 0.0022 25.5 4.4 51 3-53 21-92 (101)
19 PF10633 NPCBM_assoc: NPCBM-as 27.9 84 0.0018 23.3 3.5 27 4-48 9-35 (78)
20 PF11142 DUF2917: Protein of u 27.5 62 0.0013 24.0 2.6 22 31-52 2-28 (63)
21 TIGR00192 urease_beta urease, 27.4 1.1E+02 0.0025 25.2 4.3 51 3-53 21-92 (101)
22 cd05468 pVHL von Hippel-Landau 24.8 97 0.0021 26.4 3.7 44 3-52 8-54 (141)
23 PRK13203 ureB urease subunit b 24.4 1.3E+02 0.0029 24.9 4.2 51 3-53 21-92 (102)
24 PF01847 VHL: von Hippel-Linda 24.1 52 0.0011 29.1 1.9 44 3-52 14-60 (156)
25 PRK13202 ureB urease subunit b 23.5 1.5E+02 0.0032 24.7 4.3 51 3-53 22-93 (104)
26 PF05991 NYN_YacP: YacP-like N 23.5 26 0.00057 30.4 -0.0 9 107-115 2-10 (166)
27 cd07557 trimeric_dUTPase Trime 21.2 1.2E+02 0.0027 22.9 3.3 29 30-58 13-47 (92)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1e-79 Score=555.12 Aligned_cols=202 Identities=67% Similarity=1.325 Sum_probs=190.8
Q ss_pred EEEEEeCCCCcccccee---CCCCCCCCCceecCCCeEEEecCCCCeeeeecccCccCCCCCCCCcccCCCCCCceecCC
Q 045716 5 TFTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNG 81 (283)
Q Consensus 5 tfTv~N~C~~TVWpgi~---g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g 81 (283)
+|||+|||+||||||++ |++.+..+||+|+||++++|.+|++|+|||||||||++|+.|++.|+||||+ |+|+|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-CeeecCC
Confidence 59999999999999998 5677888999999999999999999999999999999999999999999999 8899998
Q ss_pred CCCCCCcceeEEeec-CCCCccccccccccccCCceEecCCCC------CCCCCCCCCCCcccccc------CCcccccc
Q 045716 82 AGAAPPATLAEFTLG-SGSQDFYDVSLVDGYNIPIVVEGSGRS------GVAPPLDVSCPNELRVQ------GGCRSACE 148 (283)
Q Consensus 82 ~G~~pPaTlaEftl~-~~~~d~YDVSlVdGyNlPm~I~p~~g~------gC~~dln~~CP~eL~v~------~gC~SaC~ 148 (283)
.+++||+|||||||. .+++|||||||||||||||.|.|+++. +|..|||..||+||+++ .||+|||.
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 888999999999994 457899999999999999999997542 58999999999999985 26999999
Q ss_pred ccCCCccccCCCCCCCCCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEec
Q 045716 149 AFGNPEYCCSGSFNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITFC 207 (283)
Q Consensus 149 a~~~~~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtFC 207 (283)
+|++|||||+|+|++|++|+|+.||++||++||+||+|+|||++++|+|++ ++|+||||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999986 89999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=6.3e-78 Score=543.15 Aligned_cols=202 Identities=59% Similarity=1.186 Sum_probs=190.5
Q ss_pred EEEEeCCCCcccccee--CCCCCCCCCceecCCCeEEEecCCCCe-eeeecccCccCCCCCCCCcccCCCCCCceecCCC
Q 045716 6 FTFVNKCDYTVWPGIL--GSPKLDSTGFELQKGGSRSFQAPTGWS-GRFWGRTGCNFDSSGHGSCATADCGSNQVECNGA 82 (283)
Q Consensus 6 fTv~N~C~~TVWpgi~--g~~~l~~~G~~L~pG~s~s~~vP~~Ws-GR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g~ 82 (283)
|||+|||+|||||||+ |++.|..+||+|+||++++|.+|++|. |||||||||++|++|++.|+||||| |+|+|++.
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~g~ 79 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCNGW 79 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecCCC
Confidence 7999999999999998 567777899999999999999999996 9999999999999999999999999 99999998
Q ss_pred CCCCCcceeEEee-cCCCCccccccccccccCCceEecCCCC------CCCCCCCCCCCcccccc-----CCcccccccc
Q 045716 83 GAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRS------GVAPPLDVSCPNELRVQ-----GGCRSACEAF 150 (283)
Q Consensus 83 G~~pPaTlaEftl-~~~~~d~YDVSlVdGyNlPm~I~p~~g~------gC~~dln~~CP~eL~v~-----~gC~SaC~a~ 150 (283)
+++||+||||||| +.+++|||||||||||||||.|.|+++. +|..|||..||+||+++ .||+|||.+|
T Consensus 80 gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 80 GGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 8899999999999 4567899999999999999999997432 58999999999999996 3599999999
Q ss_pred CCCccccCCCCCCCCCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEecC
Q 045716 151 GNPEYCCSGSFNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITFCP 208 (283)
Q Consensus 151 ~~~~yCC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtFCP 208 (283)
++|||||+|+|++|++|+|+.||++||++||+||+|+|||++++|+|++ ++|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999999987 899999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=2e-77 Score=542.62 Aligned_cols=201 Identities=44% Similarity=0.916 Sum_probs=183.6
Q ss_pred EEEEeCCCCcccccee---CCC---CCCCCCceecCCCeEEEecCCCCe-eeeecccCccCC-CCCCCCcccCCCCCCce
Q 045716 6 FTFVNKCDYTVWPGIL---GSP---KLDSTGFELQKGGSRSFQAPTGWS-GRFWGRTGCNFD-SSGHGSCATADCGSNQV 77 (283)
Q Consensus 6 fTv~N~C~~TVWpgi~---g~~---~l~~~G~~L~pG~s~s~~vP~~Ws-GR~WaRTGCs~d-~~g~~~C~TGDCgsG~l 77 (283)
|||+|||+|||||||+ |++ .+..+||+|+||++++|.+|++|+ |||||||||++| ..|+++|+||||| |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999998 444 456799999999999999999997 999999999999 4699999999999 899
Q ss_pred ecCCCCCCCCcceeEEeecCCCCccccccccccccCCceEecCC---CCCCCCCCCCCCCcccccc-------CCccccc
Q 045716 78 ECNGAGAAPPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG---RSGVAPPLDVSCPNELRVQ-------GGCRSAC 147 (283)
Q Consensus 78 ~C~g~G~~pPaTlaEftl~~~~~d~YDVSlVdGyNlPm~I~p~~---g~gC~~dln~~CP~eL~v~-------~gC~SaC 147 (283)
+|++ ++.||+|||||+|..+++|||||||||||||||.|.|.. ..+|..|||..||+||+++ .||+|||
T Consensus 80 ~C~~-~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~~~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~SaC 158 (229)
T cd09219 80 TCEN-SDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNNITCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCISPC 158 (229)
T ss_pred ecCC-CCCCCcceeeEEecCCCCceeEEEEecccccceEeccCCCCCCCcccCCCcccCCHHHccccCCCCccceecCHh
Confidence 9995 567999999999954478999999999999999999954 2368999999999999985 2699999
Q ss_pred cc-cCC--CccccCCCCCCCCCCCC--CcchHHHHhhCCCCccCCCCCCC--CceeecC---CCeEEEecC
Q 045716 148 EA-FGN--PEYCCSGSFNSPATCKP--SMYSSIFKNACPKSYSYAYDDAT--STFTCTA---ADYTITFCP 208 (283)
Q Consensus 148 ~a-~~~--~~yCC~G~~~~p~~C~p--t~Ys~~FK~~CP~AYsya~DD~t--StftC~~---~~Y~VtFCP 208 (283)
.+ |+. |||||+|+|++|++|+| +.||++||++||+||||||||++ ++|||++ ++|+|||||
T Consensus 159 ~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 159 NRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 99 655 99999999999999999 88999999999999999999999 6799986 899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=4.4e-74 Score=516.24 Aligned_cols=198 Identities=63% Similarity=1.280 Sum_probs=160.3
Q ss_pred eCCCCcccccee---CCCCCCCCCceecCCCeEEEecCCCCeeeeecccCccCCCCCCCCcccCCCCCCceecCCCCCCC
Q 045716 10 NKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAP 86 (283)
Q Consensus 10 N~C~~TVWpgi~---g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g~G~~p 86 (283)
|||+||||||++ |++.+..+||+|+||++++|.+|++|+|||||||||++++.|+++|+||||+ |+|+|++.++++
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccCcc
Confidence 999999999999 3445567899999999999999999999999999999999999999999999 999999877889
Q ss_pred CcceeEEee-cCCCCccccccccccccCCceEecCCCC-----CCCCCCCCCCCcccccc-----CCccccccccCCCcc
Q 045716 87 PATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRS-----GVAPPLDVSCPNELRVQ-----GGCRSACEAFGNPEY 155 (283)
Q Consensus 87 PaTlaEftl-~~~~~d~YDVSlVdGyNlPm~I~p~~g~-----gC~~dln~~CP~eL~v~-----~gC~SaC~a~~~~~y 155 (283)
|+|||||+| +.+++|||||||||||||||.|+|.++. +|..||+..||.||+++ .+|+|+|.+|++|+|
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCccccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 999999999 5778999999999999999999999543 47889999999999984 359999999999999
Q ss_pred ccCCCCCCCCCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEecC
Q 045716 156 CCSGSFNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITFCP 208 (283)
Q Consensus 156 CC~G~~~~p~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtFCP 208 (283)
||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|++ ++|+|||||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 99999999999999999999999999999999999999999997 899999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=5.7e-57 Score=389.35 Aligned_cols=151 Identities=52% Similarity=1.153 Sum_probs=134.1
Q ss_pred EEEEeCCCCcccccee---CCCCCCCCCceecCCCeEEEecCCCCeeeeecccCccCCC-CCCCCcccCCCCCCceecCC
Q 045716 6 FTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDS-SGHGSCATADCGSNQVECNG 81 (283)
Q Consensus 6 fTv~N~C~~TVWpgi~---g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~WaRTGCs~d~-~g~~~C~TGDCgsG~l~C~g 81 (283)
|||+|||+||||||++ |++ +..+||+|+||++++|.+|++|+|||||||||++|+ .|++.|+||||+ |+|+|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC
Confidence 7999999999999998 444 678999999999999999999999999999999998 799999999999 8999998
Q ss_pred CCCCCCcceeEEee-cCCCCccccccccccccCCceEecCCCCCCCCCCCCCCCccccccCCccccccccCCCccccCCC
Q 045716 82 AGAAPPATLAEFTL-GSGSQDFYDVSLVDGYNIPIVVEGSGRSGVAPPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGS 160 (283)
Q Consensus 82 ~G~~pPaTlaEftl-~~~~~d~YDVSlVdGyNlPm~I~p~~g~gC~~dln~~CP~eL~v~~gC~SaC~a~~~~~yCC~G~ 160 (283)
++.||+||||||| +.+++|||||||||||||||.|.|+++ . |+
T Consensus 79 -~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~-~--------C~-------------------------- 122 (157)
T cd09215 79 -TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPG-E--------CP-------------------------- 122 (157)
T ss_pred -CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCC-C--------CC--------------------------
Confidence 4569999999999 456789999999999999999999742 1 21
Q ss_pred CCCCCCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEec
Q 045716 161 FNSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITFC 207 (283)
Q Consensus 161 ~~~p~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtFC 207 (283)
+..|.. ||+||+|||||++++|+|++ ++|+|+||
T Consensus 123 ---~~~C~~----------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 123 ---TPICAA----------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---CCcccc----------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 012221 99999999999999999997 89999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=1.9e-50 Score=346.79 Aligned_cols=149 Identities=52% Similarity=1.098 Sum_probs=130.5
Q ss_pred EEEEeCCCCccccceeCCCCCCCCCceecCCCeEEEecCCC-CeeeeecccCccCCCCCCCCcccCCCCCCceecCCCCC
Q 045716 6 FTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTG-WSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGA 84 (283)
Q Consensus 6 fTv~N~C~~TVWpgi~g~~~l~~~G~~L~pG~s~s~~vP~~-WsGR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g~G~ 84 (283)
|||+|||+||||||++. ..+||+|+||++++|.+|++ |+|||||||||++|++|+++|+||||| |+++|.+ ++
T Consensus 1 ~~~~N~C~~tvWp~~~~----~~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~-~g 74 (151)
T cd09217 1 FTITNNCGYTVWPAATP----VGGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG-SG 74 (151)
T ss_pred CEEEeCCCCcccceEec----CCCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC-CC
Confidence 79999999999999982 35899999999999999997 999999999999999999999999999 8999995 55
Q ss_pred CCCcceeEEeecCCCCccccccccccccCCceEecCCCCCCCCCCCCCCCccccccCCccccccccCCCccccCCCCCCC
Q 045716 85 APPATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSGRSGVAPPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGSFNSP 164 (283)
Q Consensus 85 ~pPaTlaEftl~~~~~d~YDVSlVdGyNlPm~I~p~~g~gC~~dln~~CP~eL~v~~gC~SaC~a~~~~~yCC~G~~~~p 164 (283)
.||+||+||+|..+++||||||+||||||||.|.|+++ + |+ .
T Consensus 75 ~pp~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~~-~--------C~----------~------------------- 116 (151)
T cd09217 75 KPPATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTGG-G--------CH----------A------------------- 116 (151)
T ss_pred CCCceeEEEEecCCCCccEEEEeecccccceEEecCCC-C--------CC----------C-------------------
Confidence 89999999999545789999999999999999999732 2 22 1
Q ss_pred CCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEecC
Q 045716 165 ATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITFCP 208 (283)
Q Consensus 165 ~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtFCP 208 (283)
..|... ||+||+|++|| .++|+|+. ++|+|||||
T Consensus 117 ~~C~~d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 117 IPCAAN---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred CcCCCC---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 123321 99999999984 79999987 899999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=3.5e-49 Score=339.67 Aligned_cols=148 Identities=47% Similarity=0.805 Sum_probs=130.1
Q ss_pred EEEEeCCCCccccceeC---CCCCCCCCceecCCCeEEEecCCCCeeeeecccCccCCCCCCCCcccCCCCCCceecCCC
Q 045716 6 FTFVNKCDYTVWPGILG---SPKLDSTGFELQKGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGA 82 (283)
Q Consensus 6 fTv~N~C~~TVWpgi~g---~~~l~~~G~~L~pG~s~s~~vP~~WsGR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g~ 82 (283)
|||+|||+|||||++++ ++.+..+||+|+||++++|++|.+|+||||+||||+++..+++.|+||||+ + +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccCCC
Confidence 79999999999999984 445567899999999999999999999999999999998899999999998 5 788877
Q ss_pred CCCCCcceeEEeec-CCCCccccccccccccCCceEecCCCCCCCCCCCCCCCccccccCCccccccccCCCccccCCCC
Q 045716 83 GAAPPATLAEFTLG-SGSQDFYDVSLVDGYNIPIVVEGSGRSGVAPPLDVSCPNELRVQGGCRSACEAFGNPEYCCSGSF 161 (283)
Q Consensus 83 G~~pPaTlaEftl~-~~~~d~YDVSlVdGyNlPm~I~p~~g~gC~~dln~~CP~eL~v~~gC~SaC~a~~~~~yCC~G~~ 161 (283)
++.||+||+||||. .+++|||||||||||||||.|+|+++.
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~-------------------------------------- 120 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD-------------------------------------- 120 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC--------------------------------------
Confidence 78899999999994 457899999999999999999997432
Q ss_pred CCCCCCCCCcchHHHHhhCCCCccCCCCCCCCceeecC-CCeEEEe
Q 045716 162 NSPATCKPSMYSSIFKNACPKSYSYAYDDATSTFTCTA-ADYTITF 206 (283)
Q Consensus 162 ~~p~~C~pt~Ys~~FK~~CP~AYsya~DD~tStftC~~-~~Y~VtF 206 (283)
..|++.. |||+|+|||+.++|+|++ .+|.|+|
T Consensus 121 ---g~C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 121 ---GTCLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---CCccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 1233221 999999999999999987 8999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.75 E-value=0.00034 Score=61.19 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCcceeEEeec-CCCCcccccccccccc---CCceEecCC
Q 045716 86 PPATLAEFTLG-SGSQDFYDVSLVDGYN---IPIVVEGSG 121 (283)
Q Consensus 86 pPaTlaEftl~-~~~~d~YDVSlVdGyN---lPm~I~p~~ 121 (283)
.|.|.+||+|. .+.+-|||+|.|.|.. -+|.|.|.+
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~ 111 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD 111 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC
Confidence 58999999994 4568999999999974 346666643
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.03 E-value=0.078 Score=52.00 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=63.4
Q ss_pred EEEEEeCCCC--ccccceeCCCC----------------CCC-----C-----Ccee-cCCCeEEEecCCCCeeeeeccc
Q 045716 5 TFTFVNKCDY--TVWPGILGSPK----------------LDS-----T-----GFEL-QKGGSRSFQAPTGWSGRFWGRT 55 (283)
Q Consensus 5 tfTv~N~C~~--TVWpgi~g~~~----------------l~~-----~-----G~~L-~pG~s~s~~vP~~WsGR~WaRT 55 (283)
.|+|+||=.. +||..|+|... +.. . .+.| ++|++..+.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 5899999977 89987764310 000 0 1122 257888899998 999999322
Q ss_pred CccCCCCCCCCcccCCCCCCceecCCCCCCCC-----cceeEEeecCCCCccccccccccccCCceEecCC
Q 045716 56 GCNFDSSGHGSCATADCGSNQVECNGAGAAPP-----ATLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121 (283)
Q Consensus 56 GCs~d~~g~~~C~TGDCgsG~l~C~g~G~~pP-----aTlaEftl~~~~~d~YDVSlVdGyNlPm~I~p~~ 121 (283)
|=.. .|.=. . +.+.++-...-.+-| -..+|||+... .-|-++|.||-|.+||.|+-.+
T Consensus 81 g~~L----~F~~~-~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~-gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSKL----RFKVV-T--NPALVQPAGWNPSDPNFNILHDWVEFTFNDA-GLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCee----EEEec-C--CCcccCCCCCCCCCCCccceEEEEEEEecCC-ceEecccceeeeccceEEEEec
Confidence 1100 11111 1 112222222111111 14599999633 4689999999999999998664
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.61 E-value=0.35 Score=47.79 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=48.3
Q ss_pred CCCeEEEecCCCCeeeeecccCccCCCCCCCCcccCCCCCCceecCCCCCCCC-----cceeEEeecCCCCccccccccc
Q 045716 35 KGGSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCATADCGSNQVECNGAGAAPP-----ATLAEFTLGSGSQDFYDVSLVD 109 (283)
Q Consensus 35 pG~s~s~~vP~~WsGR~WaRTGCs~d~~g~~~C~TGDCgsG~l~C~g~G~~pP-----aTlaEftl~~~~~d~YDVSlVd 109 (283)
+|++.++.+|.-++||||=-.+=.. .|- ...+ |.+.++-...-.+-| -..+|||+.. ..-|-++|.||
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~-~~l~~N~S~VD 134 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS-GQLYANISYVD 134 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC-CceEeccccee
Confidence 5788899999989999993221100 011 1111 223333222111111 1459999964 45689999999
Q ss_pred cccCCceEecCC
Q 045716 110 GYNIPIVVEGSG 121 (283)
Q Consensus 110 GyNlPm~I~p~~ 121 (283)
-|.+||.|+-.+
T Consensus 135 ~~~~P~~l~l~~ 146 (369)
T cd09220 135 FVGLPLGLSLTT 146 (369)
T ss_pred eeccCeEEEEEc
Confidence 999999987654
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=48.91 E-value=7.8 Score=37.67 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=26.8
Q ss_pred ceeEEeecCCCCccccccccccccCCceEecCC
Q 045716 89 TLAEFTLGSGSQDFYDVSLVDGYNIPIVVEGSG 121 (283)
Q Consensus 89 TlaEftl~~~~~d~YDVSlVdGyNlPm~I~p~~ 121 (283)
..+|||+. ...-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n-~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYN-ATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEec-CCceEecccceeeeccCeEEEEEc
Confidence 45999996 357889999999999999987654
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=48.51 E-value=12 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=19.0
Q ss_pred CcchHHHHhhCC--CCccCCCCCC
Q 045716 170 SMYSSIFKNACP--KSYSYAYDDA 191 (283)
Q Consensus 170 t~Ys~~FK~~CP--~AYsya~DD~ 191 (283)
+.|++++++... .+|.|+|||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 568999999997 7899999994
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=45.80 E-value=9.7 Score=37.84 Aligned_cols=23 Identities=35% Similarity=0.801 Sum_probs=20.4
Q ss_pred CCcchHHHHhhCC--CCccCCCCCC
Q 045716 169 PSMYSSIFKNACP--KSYSYAYDDA 191 (283)
Q Consensus 169 pt~Ys~~FK~~CP--~AYsya~DD~ 191 (283)
-++|++++++.-+ .+|.|||||-
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred chHHHHHHHHhccCCCeeccccccc
Confidence 3679999999998 7899999995
No 14
>PHA03094 dUTPase; Provisional
Probab=40.67 E-value=30 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=24.8
Q ss_pred CceecCCCeEE------EecCCCCeeeeecccCccC
Q 045716 30 GFELQKGGSRS------FQAPTGWSGRFWGRTGCNF 59 (283)
Q Consensus 30 G~~L~pG~s~s------~~vP~~WsGR~WaRTGCs~ 59 (283)
.+.|.||+... +.+|.+|.|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccc
Confidence 46789999876 6889999999999976543
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=39.09 E-value=14 Score=36.49 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=19.5
Q ss_pred CcchHHHHhhCC--CCccCCCCCC
Q 045716 170 SMYSSIFKNACP--KSYSYAYDDA 191 (283)
Q Consensus 170 t~Ys~~FK~~CP--~AYsya~DD~ 191 (283)
++|++++++.-. .+|.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999994
No 16
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.25 E-value=49 Score=27.32 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.3
Q ss_pred ceEEEEEeCCCCcccccee--CCCCCCCCCc-eecCCCeEEE
Q 045716 3 AATFTFVNKCDYTVWPGIL--GSPKLDSTGF-ELQKGGSRSF 41 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~--g~~~l~~~G~-~L~pG~s~s~ 41 (283)
.+-|+|-|+-++.|+.+|. ....-.+-|| .|+||+-..+
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 4679999999999999996 2222334454 7999987665
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.52 E-value=95 Score=26.78 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=29.5
Q ss_pred eEEEEEeC--CCCccccceeCCCCCCCCCceecCCCeEEEecCCCCeeeee
Q 045716 4 ATFTFVNK--CDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWSGRFW 52 (283)
Q Consensus 4 ~tfTv~N~--C~~TVWpgi~g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~W 52 (283)
.+++|+|. |++++....+ .--..|+||+++++.++..-.|++|
T Consensus 71 Vtl~vtN~d~~~H~f~i~~~------gis~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 71 VKVTVENKSPISEGFSIDAY------GISEVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred EEEEEEeCCCCccceEECCC------CcceEECCCCeEEEEEECCCCEEEE
Confidence 34566775 5555442221 1245799999999999888899998
No 18
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.16 E-value=1e+02 Score=25.48 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=33.7
Q ss_pred ceEEEEEeCCCCcccccee-----CCCCC---------------CCCCceecCCCeEEEecC-CCCeeeeec
Q 045716 3 AATFTFVNKCDYTVWPGIL-----GSPKL---------------DSTGFELQKGGSRSFQAP-TGWSGRFWG 53 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~-----g~~~l---------------~~~G~~L~pG~s~s~~vP-~~WsGR~Wa 53 (283)
.++++|+|..+-+|+.|.. -++.| .++....+||+++++++- -+=..+|+|
T Consensus 21 ~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 21 AVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred EEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 4789999999999999985 22222 234456678888888753 222335553
No 19
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.93 E-value=84 Score=23.34 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=13.5
Q ss_pred eEEEEEeCCCCccccceeCCCCCCCCCceecCCCeEEEecCCCCe
Q 045716 4 ATFTFVNKCDYTVWPGILGSPKLDSTGFELQKGGSRSFQAPTGWS 48 (283)
Q Consensus 4 ~tfTv~N~C~~TVWpgi~g~~~l~~~G~~L~pG~s~s~~vP~~Ws 48 (283)
.+++|+|....++--. +.++.+|.+|.
T Consensus 9 ~~~tv~N~g~~~~~~v------------------~~~l~~P~GW~ 35 (78)
T PF10633_consen 9 VTLTVTNTGTAPLTNV------------------SLSLSLPEGWT 35 (78)
T ss_dssp EEEEEE--SSS-BSS-------------------EEEEE--TTSE
T ss_pred EEEEEEECCCCceeeE------------------EEEEeCCCCcc
Confidence 5678888886654322 24666788886
No 20
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=27.54 E-value=62 Score=24.01 Aligned_cols=22 Identities=50% Similarity=0.903 Sum_probs=17.7
Q ss_pred ceecCCCeEEEecCCCC-----eeeee
Q 045716 31 FELQKGGSRSFQAPTGW-----SGRFW 52 (283)
Q Consensus 31 ~~L~pG~s~s~~vP~~W-----sGR~W 52 (283)
|+|.||+..++.+..+. +|++|
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vW 28 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVW 28 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEE
Confidence 78999999998887664 47888
No 21
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.38 E-value=1.1e+02 Score=25.23 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCcccccee-----CCCCC---------------CCCCceecCCCeEEEecC-CCCeeeeec
Q 045716 3 AATFTFVNKCDYTVWPGIL-----GSPKL---------------DSTGFELQKGGSRSFQAP-TGWSGRFWG 53 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~-----g~~~l---------------~~~G~~L~pG~s~s~~vP-~~WsGR~Wa 53 (283)
.+++.|+|..+-+|+.|.. -++.| .++....+||+++++++- -+=..+++|
T Consensus 21 ~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 21 TVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred EEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 4789999999999999985 22222 234456678998888753 232345554
No 22
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=24.77 E-value=97 Score=26.38 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCcccccee---CCCCCCCCCceecCCCeEEEecCCCCeeeee
Q 045716 3 AATFTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFW 52 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~---g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~W 52 (283)
.+.++|+|+++.+|-+=++ |.+.. =..|+||+...+. .+.|..|
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~---Y~~l~pg~~~~~~---Ty~~H~W 54 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVS---YGTLQPGETVRQN---TYVGHPW 54 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEE---eeeeCCCCEEeec---ccCCCcE
Confidence 3689999999999876676 44321 1369999987543 4666777
No 23
>PRK13203 ureB urease subunit beta; Reviewed
Probab=24.45 E-value=1.3e+02 Score=24.87 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCcccccee-----CCCCC---------------CCCCceecCCCeEEEecC-CCCeeeeec
Q 045716 3 AATFTFVNKCDYTVWPGIL-----GSPKL---------------DSTGFELQKGGSRSFQAP-TGWSGRFWG 53 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~-----g~~~l---------------~~~G~~L~pG~s~s~~vP-~~WsGR~Wa 53 (283)
..++.|+|..+-+|+.|.. -++.| .++....+||+++++.+- -+=..+++|
T Consensus 21 ~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 21 TVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred EEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 4789999999999999985 12222 234456678888887753 222335554
No 24
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=24.14 E-value=52 Score=29.09 Aligned_cols=44 Identities=27% Similarity=0.292 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCCcccccee---CCCCCCCCCceecCCCeEEEecCCCCeeeee
Q 045716 3 AATFTFVNKCDYTVWPGIL---GSPKLDSTGFELQKGGSRSFQAPTGWSGRFW 52 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~---g~~~l~~~G~~L~pG~s~s~~vP~~WsGR~W 52 (283)
...+.|+|+++.+|-+-++ |.+..- ..|+||+...++ .+.|..|
T Consensus 14 ~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW 60 (156)
T PF01847_consen 14 PSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPW 60 (156)
T ss_dssp EEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EE
T ss_pred ceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcE
Confidence 3679999999999855555 554322 359999988876 3455555
No 25
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.54 E-value=1.5e+02 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCCcccccee-----CCCCC---------------CCCCceecCCCeEEEecC-CCCeeeeec
Q 045716 3 AATFTFVNKCDYTVWPGIL-----GSPKL---------------DSTGFELQKGGSRSFQAP-TGWSGRFWG 53 (283)
Q Consensus 3 a~tfTv~N~C~~TVWpgi~-----g~~~l---------------~~~G~~L~pG~s~s~~vP-~~WsGR~Wa 53 (283)
.++++|+|..+-+|+.|.. -++.| .++....+||+++++.+- -+=..+++|
T Consensus 22 ~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 93 (104)
T PRK13202 22 RLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPG 93 (104)
T ss_pred eEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEc
Confidence 4689999999999999985 22222 234456678888888753 222345554
No 26
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.54 E-value=26 Score=30.43 Aligned_cols=9 Identities=56% Similarity=1.036 Sum_probs=6.7
Q ss_pred ccccccCCc
Q 045716 107 LVDGYNIPI 115 (283)
Q Consensus 107 lVdGyNlPm 115 (283)
+||||||=-
T Consensus 2 lIDGYNli~ 10 (166)
T PF05991_consen 2 LIDGYNLIH 10 (166)
T ss_pred eEcchhhhC
Confidence 689999643
No 27
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=21.16 E-value=1.2e+02 Score=22.91 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=21.7
Q ss_pred CceecCCCeEE------EecCCCCeeeeecccCcc
Q 045716 30 GFELQKGGSRS------FQAPTGWSGRFWGRTGCN 58 (283)
Q Consensus 30 G~~L~pG~s~s------~~vP~~WsGR~WaRTGCs 58 (283)
.+.|+|++..- +.+|.++.|.|++|.+-.
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~~ 47 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLA 47 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchhh
Confidence 47788887544 457889999999996543
Done!