BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045717
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 13/212 (6%)
Query: 155 PTHPSFGDKDMPPPPAKWRGKCEFAGGAGCNNKIIGARNFLNKSEP--------PTDNEG 206
P PSF D+ PPP KW+G CE + CN KIIGAR++ + P P D G
Sbjct: 35 PESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSY-HIGRPISPGDVNGPRDTNG 93
Query: 207 HGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDA 266
HGTHT+STAAG V+ AN+ G GTA G PLA +A YK C +N C ++ + AA D
Sbjct: 94 HGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVC--WNDGCSDTDILAAYDD 151
Query: 267 AIEDGVDVLSLSIGLGPYQHKEXXXXXXXXXXXXXXXXXXXVSISAGNWGPKPFSVVNDA 326
AI DGVD++SLS+G +H S SAGN GP F+ + +
Sbjct: 152 AIADGVDIISLSVGGANPRH--YFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLS 209
Query: 327 PWMLTVGASTTDRSIVTSVQLGNQETYDGESL 358
PW+L+V AST DR VT VQ+GN +++ G S+
Sbjct: 210 PWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI 241
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 129/274 (47%), Gaps = 30/274 (10%)
Query: 119 TTHTPRFLGLHQNSGFWKDSNFXXXXXXXXXXXXXXPTHPSFGDKDMPPPPAKWRGKCEF 178
TTHT FL L+ +SG W S P SF D MP P +W+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 179 A---GGAGCNNKIIGARNFLNK---SEPPT---------DNEGHGTHTSSTAAGTFVNGA 223
+ CN K+IGA N+ NK + PT D +GHGTH +S AG F G
Sbjct: 61 GTQFNASMCNRKLIGA-NYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGV 119
Query: 224 NILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+ G A GTA G+AP A LA+YK +N S + AA+D A+ DGVD++S+S G
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKF--SFNEGTFTSDLIAAMDQAVADGVDMISISYG--- 174
Query: 284 YQHKEXXXXXXXXXXXXXXXXXXXVSISAGNWGPKPFSVVNDAPWMLTVGASTTDRSIVT 343
Y+ VS SAGN GP S+ N +PW+L V + TDR+
Sbjct: 175 YRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAG 234
Query: 344 SVQLGNQETYDGESLLQWTDIPSEQL----PLVY 373
++ LGN G + W+ P+ P++Y
Sbjct: 235 TLTLGN-----GLKIRGWSLFPARAFVRDSPVIY 263
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 187 KIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
K+IG +F+N P D+ GHGTH +S AAGT GA +NG GMAP A L K
Sbjct: 160 KVIGWVDFVNGKTTPYDDNGHGTHVASIAAGT---GA----ASNGKYKGMAPGAKLVGIK 212
Query: 247 ACDDYNGTCPESSVSAALDAAIED----GVDVLSLSIGLGPYQHKEXXXXXXXXXXXXXX 302
+ G+ S + +D A+++ G+ V++LS+G
Sbjct: 213 VLNG-QGSGSISDIINGVDWAVQNKDKYGIKVINLSLGS---SQSSDGTDSLSQAVNNAW 268
Query: 303 XXXXXVSISAGNWGPKPFSVVN--DAPWMLTVGA 334
V ++AGN GP ++V + A ++TVGA
Sbjct: 269 DAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 187 KIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
K++G +F++ P + GHGTH + AA N I G AP A + +
Sbjct: 51 KVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGI--------AGTAPKASILAVR 102
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
D+ +G+ ++V+ + A + G V+SLS+G
Sbjct: 103 VLDN-SGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 187 KIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
K++G +F++ P + GHGTH + AA N I G AP A + +
Sbjct: 51 KVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGI--------AGTAPKASILAVR 102
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
D+ +G+ ++V+ + A + G V+SLS+G
Sbjct: 103 VLDN-SGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 187 KIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
K+I +F++ P D HGTH + AA N I GMAP + +
Sbjct: 52 KVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGI--------AGMAPNTRILAVR 103
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
A D NG+ S ++ A+ A + G +V++LS+G
Sbjct: 104 ALDR-NGSGTLSDIADAIIYAADSGAEVINLSLG 136
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 187 KIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
K++G +F++ TD GHGTH + T A N +L G+AP L K
Sbjct: 43 KVVGGASFVSGESYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPNVSLYAIK 93
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+ +G+ S++ + ++ A ++G+DV+++S+G GP
Sbjct: 94 VLNS-SGSGSYSAIVSGIEWATQNGLDVINMSLG-GP 128
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 164 DMPPPPAKWRGKCEFAG------GAGCN-------NKIIGARNFLNK----SEPPTDNEG 206
++ PA WR + AG GC +IIG N +DN G
Sbjct: 26 EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNG 85
Query: 207 HGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDA 266
HGTH + T A + VG+AP A L + KA +G+ ++ A+
Sbjct: 86 HGTHVAGTVAAA---------ETGSGVVGVAPKADLFIIKALSG-DGSGEMGWIAKAIRY 135
Query: 267 AIE------DGVDVLSLSIGLGPYQHKE 288
A++ + + ++++S+G GP +E
Sbjct: 136 AVDWRGPKGEQMRIITMSLG-GPTDSEE 162
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 164 DMPPPPAKWRGKCEFAG------GAGCN-------NKIIGARNFLNK----SEPPTDNEG 206
++ PA WR + AG GC +IIG N +DN G
Sbjct: 26 EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNG 85
Query: 207 HGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDA 266
HGTH + T A + VG+AP A L + KA +G+ ++ A+
Sbjct: 86 HGTHVAGTVAAA---------ETGSGVVGVAPKADLFIIKALSG-DGSGEMGWIAKAIRY 135
Query: 267 AIE------DGVDVLSLSIGLGPYQHKE 288
A++ + + ++++S+G GP +E
Sbjct: 136 AVDWRGPKGEQMRIITMSLG-GPTDSEE 162
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPCASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPCASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 164 DMPPPPAKWRGKCEFAG------GAGCN-------NKIIGARNFLNK----SEPPTDNEG 206
++ PA WR + AG GC +IIG N +DN G
Sbjct: 8 EIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNG 67
Query: 207 HGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDA 266
HGTH + T A + VG+AP A L + KA +G+ ++ A+
Sbjct: 68 HGTHVAGTVAAA---------ETGSGVVGVAPKADLFIIKALSG-DGSGEMGWIAKAIRY 117
Query: 267 AIE------DGVDVLSLSIGLGPYQHKE 288
A++ + + ++++S+G GP +E
Sbjct: 118 AVDWRGPKGEQMRIITMSLG-GPTDSEE 144
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALDNSIG-----VLGVAPSASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALDNSIG-----VLGVAPSASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH AGT N +G +G+AP A L
Sbjct: 43 KVAGGASFVPSETNPFQDNNSHGTHV----AGTVAALDNSIG-----VLGVAPSASLYAV 93
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 94 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 187 KIIGARNFLNKSEPPT-DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
I G +F+ EP T D GHGTH AGT N +G +G+AP A L
Sbjct: 42 NIRGGASFV-PGEPSTQDGNGHGTHV----AGTIAALDNSIG-----VLGVAPSAELYAV 91
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
K +G+ SS++ L+ A +G+ V +LS+G
Sbjct: 92 KVL-GASGSGAISSIAQGLEWAGNNGMHVANLSLG 125
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 187 KIIGARNFLNKSEPPT-DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
I G +F+ EP T D GHGTH AGT N +G +G+AP A L
Sbjct: 42 NIRGGASFV-PGEPSTQDGNGHGTHV----AGTIAALDNSIG-----VLGVAPSAELYAV 91
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
K +G+ SS++ L+ A +G+ V +LS+G
Sbjct: 92 KVLGA-SGSGAISSIAQGLEWAGNNGMHVANLSLG 125
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P D HGTH AGT N +G +G+AP A L K
Sbjct: 44 VRGGASFVPSETNPYQDGSSHGTHV----AGTIAALNNSIG-----VLGVAPSASLYAVK 94
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
D G+ S + ++ AI + +DV+++S+G GP
Sbjct: 95 VLDS-TGSGQYSWIINGIEWAISNNMDVINMSLG-GP 129
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P D HGTH AGT N +G +G+AP A L K
Sbjct: 44 VRGGASFVPSETNPYQDGSSHGTHV----AGTIAALNNSIG-----VLGVAPSASLYAVK 94
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
D G+ S + ++ AI + +DV+++S+G GP
Sbjct: 95 VLDS-TGSGQYSWIINGIEWAISNNMDVINMSLG-GP 129
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 187 KIIGARNFLNKSEPPT-DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
I G +F+ EP T D GHGTH AGT N +G +G+AP A L
Sbjct: 42 NIRGGASFV-PGEPSTQDGNGHGTHV----AGTIAALNNSIG-----VLGVAPSAELYAV 91
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
K +G SS++ L+ A +G+ V +LS+G
Sbjct: 92 KVLGA-DGRGAISSIAQGLEWAGNNGMHVANLSLG 125
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPCASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH + T A N +L G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHVAGTVA-ALNNSIGVL--------GVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 34/148 (22%)
Query: 164 DMPPPPAKWRGKCEFAG--------GAGCN-----NKIIGARNFLNK----SEPPTDNEG 206
++ PA WR + AG G + +IIG N +DN G
Sbjct: 26 EIVEAPAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTDYGGDETNFSDNNG 85
Query: 207 HGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESSVSAALDA 266
HGTH + T A + VG+AP A L + KA +G+ ++ A+
Sbjct: 86 HGTHVAGTVAAA---------ETGSGVVGVAPKADLFIIKALSG-DGSGEMGWIAKAIRY 135
Query: 267 AIE------DGVDVLSLSIGLGPYQHKE 288
A++ + + ++++S+G GP +E
Sbjct: 136 AVDWRGPKGEQMRIITMSLG-GPTDSEE 162
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P D HGTH AGT N +G +G++P A L K
Sbjct: 44 VRGGASFVPSETNPYQDGSSHGTHV----AGTIAALNNSIG-----VLGVSPSASLYAVK 94
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
D G+ S + ++ AI + +DV+++S+G GP
Sbjct: 95 VLDS-TGSGQYSWIINGIEWAISNNMDVINMSLG-GP 129
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 203 DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESS--V 260
D +GHGT S + ANG +G+AP MY+ G+ V
Sbjct: 173 DRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVF----GSKKTELLWV 216
Query: 261 SAALDAAIEDGVDVLSLSIG 280
S A+ A DG V+++S+G
Sbjct: 217 SKAIVQAANDGNQVINISVG 236
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 203 DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACDDYNGTCPESS--V 260
D +GHGT S + ANG +G+AP MY+ G+ V
Sbjct: 197 DRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVF----GSKKTELLWV 240
Query: 261 SAALDAAIEDGVDVLSLSIG 280
S A+ A DG V+++S+G
Sbjct: 241 SKAIVQAANDGNQVINISVG 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 21/98 (21%)
Query: 187 KIIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMY 245
K+ G +F+ +++ P DN HGTH + GT + +AP A L
Sbjct: 40 KVAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAV 81
Query: 246 KACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K +G+ S + ++ AI + +DV+++S+G GP
Sbjct: 82 KVLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 117
>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
Length = 404
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 209 THTSSTAAGTFVNGANILGQANG----TAVGMAPLAHLAMYKACDDYNGTCPESSVSAAL 264
+H+ A G++ G NG T++G + LA L M C D + T P +
Sbjct: 202 SHSKIIACHLGTGGSSCCGIVNGKSFDTSMGNSTLAGLVMSTRCGDIDPTIP---IDMIQ 258
Query: 265 DAAIEDGVDVLSLSIGL 281
IE VD+L+ GL
Sbjct: 259 QVGIEKVVDILNKKSGL 275
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 44 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 94
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 95 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 44 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 94
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 95 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 45 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 95
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 96 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 127
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 45 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 95
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 96 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 127
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 44 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 94
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 95 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 44 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 94
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 95 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 188 IIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKA 247
++G +F+ TD GHGTH + T A N +L G+AP L K
Sbjct: 44 VVGGASFVAGEAYNTDGNGHGTHVAGTVA-ALDNTTGVL--------GVAPSVSLYAVKV 94
Query: 248 CDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+ + S + + ++ A +G+DV+++S+G
Sbjct: 95 LNSSG-SGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
Query: 184 CNNKIIGARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLA 243
C + +G NF + S TD +GHGTH + +A G+ + G+AP A L
Sbjct: 51 CKDFTVG-TNFTDNS--CTDRQGHGTHVAGSALANGGTGSGVY--------GVAPEADLW 99
Query: 244 MYKACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGPYQHKEXXXXXXXXXXXXXXX 303
YK D +G+ ++ A+ A D L+ + +
Sbjct: 100 AYKVLGD-DGSGYADDIAEAIRHA-GDQATALNTKVVINMSLGSSGESSLITNAVDYAYD 157
Query: 304 XXXXVSISAGNWGPKPFSV 322
+ +AGN GPKP S+
Sbjct: 158 KGVLIIAAAGNSGPKPGSI 176
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 190 GARNFLNKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYKACD 249
GA +++ P DN HGTH AGT N +G +G+AP A L K
Sbjct: 47 GASMVPSETNPFQDNNSHGTHV----AGTVAALNNSIG-----VLGVAPSASLYAVKVLG 97
Query: 250 DYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + DV++ S+G GP
Sbjct: 98 A-DGSGQYSWIINGIEWAIANNXDVINXSLG-GP 129
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 186 NKIIGARNFLNKSEPP----TDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAH 241
N + ++F + P TD GHGTH + TA +G G G+AP A
Sbjct: 46 NNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTA---LADG----GSDQAGIYGVAPDAD 98
Query: 242 LAMYKACDDYNGTCPESSVSAAL----DAAIEDGVD-VLSLSIG 280
L YK D +G+ ++AA+ D A G ++S+S+G
Sbjct: 99 LWAYKVLLD-SGSGYSDDIAAAIRHAADQATATGTKTIISMSLG 141
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 186 NKIIGARNFLNKSEPP----TDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAH 241
N + ++F + P TD GHGTH + TA +G G G+AP A
Sbjct: 46 NNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTA---LADG----GSDQAGIYGVAPDAD 98
Query: 242 LAMYKACDDYNGTCPESSVSAAL----DAAIEDGVD-VLSLSIG 280
L YK D +G+ ++AA+ D A G ++S+S+G
Sbjct: 99 LWAYKVLLD-SGSGYSDDIAAAIRHAADQATATGTKTIISMSLG 141
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 187 KIIGARNFLNKSEPPT--DNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAM 244
K+ G + + SE P D+ HGTH AGT N +G +G+AP + L
Sbjct: 43 KVAGGASMV-PSETPNFQDDNSHGTHV----AGTVAALNNSIG-----VLGVAPSSALYA 92
Query: 245 YKACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
K D G+ S + ++ AI + +DV+++S+G GP
Sbjct: 93 VKVLGDA-GSGQYSWIINGIEWAIANNMDVINMSLG-GP 129
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 86 VLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 120
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+G+ S + ++ AI + +DV+++S+G
Sbjct: 86 VLGA-DGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIG 280
+G+ S + ++ AI + +DV+++S+G
Sbjct: 86 VLGA-DGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 194 FLNKSEPPTDNEGHGT-----HTSSTAAGTFVNGANILGQANGTAVGMAPLAH 241
LN++ EG G HT + A ++ GAN LGQ T G P+ H
Sbjct: 407 LLNRAMAFLLAEGVGVLHPAAHTVAQRAADYLFGANPLGQCYVTGFGQRPVRH 459
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 86 VLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 120
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 86 VLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 120
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 86 VLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 120
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 188 IIGARNFL-NKSEPPTDNEGHGTHTSSTAAGTFVNGANILGQANGTAVGMAPLAHLAMYK 246
+ G +F+ +++ P DN HGTH + GT + +AP A L K
Sbjct: 44 VAGGASFVPSETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 247 ACDDYNGTCPESSVSAALDAAIEDGVDVLSLSIGLGP 283
+G+ S + ++ AI + +DV+++S+G GP
Sbjct: 86 VLGA-DGSGQYSWIINGIEWAIANNMDVINMSLG-GP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,427,720
Number of Sequences: 62578
Number of extensions: 401657
Number of successful extensions: 702
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 69
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)