Query 045719
Match_columns 384
No_of_seqs 239 out of 303
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 08:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.8 2.5E-21 8.5E-26 176.8 10.2 132 184-328 48-181 (185)
2 3by4_A OTU1, ubiquitin thioest 99.8 4.7E-20 1.6E-24 171.7 8.5 120 193-328 19-139 (212)
3 3phx_A RNA-directed RNA polyme 99.7 1.6E-17 5.5E-22 151.6 6.9 119 194-330 31-161 (185)
4 3phu_A RNA-directed RNA polyme 99.7 3.4E-17 1.2E-21 153.0 8.3 149 194-357 31-193 (219)
5 1tff_A Ubiquitin thiolesterase 99.4 3.9E-13 1.3E-17 126.8 11.7 132 189-331 35-233 (234)
6 4dhi_B Ubiquitin thioesterase 99.0 8.7E-10 3E-14 106.3 10.5 97 224-332 173-277 (284)
7 4ddg_A Ubiquitin-conjugating e 99.0 1E-09 3.5E-14 110.7 9.9 96 221-327 300-398 (399)
8 2zfy_A Ubiquitin thioesterase 98.8 9E-09 3.1E-13 96.9 7.2 124 191-327 107-233 (234)
9 3dkb_A Tumor necrosis factor, 98.7 1.2E-07 4.1E-12 93.4 13.3 132 197-330 115-284 (390)
10 3zrh_A Ubiquitin thioesterase 98.5 2.3E-07 7.8E-12 92.8 9.9 125 198-331 193-351 (454)
11 2zfy_A Ubiquitin thioesterase 95.1 0.012 4E-07 55.1 3.5 35 193-227 42-80 (234)
12 1ku3_A Sigma factor SIGA; heli 34.4 55 0.0019 23.5 4.6 52 182-233 8-59 (73)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.85 E-value=2.5e-21 Score=176.76 Aligned_cols=132 Identities=21% Similarity=0.199 Sum_probs=97.6
Q ss_pred hhhHHH-HhhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCC
Q 045719 184 EFPAAL-QSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENC 262 (384)
Q Consensus 184 q~p~~l-~~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~ 262 (384)
++-+.| +..++.+++|+|||||+|||||++|..+++.|..||+.++++|++++++|.+++.+ .|++|++.|
T Consensus 48 ~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m------ 119 (185)
T 3pfy_A 48 WFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINRK------ 119 (185)
T ss_dssp HHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-------------------
T ss_pred HHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHh------
Confidence 344555 68899999999999999999999999999999999999999999999999999864 699999987
Q ss_pred CCCCccccccchhHHhhhhcceEEEEEccCc-ceecccCCCCCCCCCCCCeEEEEEecCCcceEeec
Q 045719 263 PGSDKWMTMPDMGHLIASAYNIVVFHLSMKQ-CLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFL 328 (384)
Q Consensus 263 a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~-s~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~l 328 (384)
..++.|++.++ .+++|..|+++|++++.+. ...+|+-.. ....++|+|+|++++||+||.-
T Consensus 120 ~~~~~WGg~iE-L~AlS~~~~v~I~V~~~~~~~i~i~~g~~----~~~~~~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 120 RKNNCHGNHIE-MQAMAEMYNRPVEVYQYSTEPINTFHGIH----QNEDEPIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp ------CCHHH-HHHHHHHHTSCEEEESSCSSCSEEECTTS----CCTTSCEEEEEETTTEEEEEEC
T ss_pred hCCCccchHHH-HHHHHHhhCCcEEEEECCCCCeEEecCcc----CCCCCEEEEEECCCCCcccccC
Confidence 45789999985 5999999999999998754 244443211 1236899999999999999974
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.80 E-value=4.7e-20 Score=171.69 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=101.7
Q ss_pred hhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCcccccc
Q 045719 193 IHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDKWMTMP 272 (384)
Q Consensus 193 i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~kWl~~p 272 (384)
++.+++|+|||||+|||||+|| .+++.|..||+.++++|++|+++|.++|.+ ..|++|++.| ..++.|++.+
T Consensus 19 ~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m------~~~~~WGg~i 90 (212)
T 3by4_A 19 VLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQWI------LKMESWGGAI 90 (212)
T ss_dssp EEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHHT------TSTTSCCCHH
T ss_pred CeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHHh------cCCCEEccHH
Confidence 6788999999999999999999 789999999999999999999999865543 5799999998 5578999998
Q ss_pred chhHHhhhhcceEEEEEccC-cceecccCCCCCCCCCCCCeEEEEEecCCcceEeec
Q 045719 273 DMGHLIASAYNIVVFHLSMK-QCLTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFL 328 (384)
Q Consensus 273 ~~g~iiAn~ynrpVi~ls~~-~s~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~l 328 (384)
+ .+++|..|+++|++++.. .....|+- .. ..++|+|+|. ++||.+|++
T Consensus 91 E-L~Als~~~~~~I~V~~~~~~~~~~~~~----~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 91 E-IGIISDALAVAIYVVDIDAVKIEKFNE----DK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp H-HHHHHHHHTCEEEEEETTTTEEEEEST----TT--CSEEEEEEEC-SSCEEEEEE
T ss_pred H-HHHHHHHHCCCEEEEECCCCCeEEeCC----CC--CCCeEEEEEc-CCcceEEec
Confidence 5 599999999999999864 33334421 11 2679999997 899999999
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.69 E-value=1.6e-17 Score=151.61 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=95.1
Q ss_pred hcccccCCCCCcchHHHHhHhcCC-chh-----HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCc
Q 045719 194 HHIKDVAPDGNCGFRAIADLMGFG-ENG-----WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDK 267 (384)
Q Consensus 194 ~~i~dV~gDGnCgFRAiA~~Lg~~-ed~-----~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~k 267 (384)
..++.|+|||||.|||||+||+.+ ++. |..||+.++++|++|++++ +. +..|++|++.+ ..++.
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~--~~--~~~~~~Y~~~m------~~~~~ 100 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRM------LSDNE 100 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHH--HH--CCCHHHHHHHH------TSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhh--hc--CCCHHHHHHHh------hCCCc
Confidence 456778999999999999999988 666 9999999999999999882 22 34799999998 56789
Q ss_pred cccccchhHHhhhhcceEEEEEccCcc------eecccCCCCCCCCCCCCeEEEEEecCCcceEeecCC
Q 045719 268 WMTMPDMGHLIASAYNIVVFHLSMKQC------LTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLP 330 (384)
Q Consensus 268 Wl~~p~~g~iiAn~ynrpVi~ls~~~s------~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~ 330 (384)
|++..+ ..++|..|+++|++++.+.. ..|- +.. ..++|+|+|..++||.+|....
T Consensus 101 WGg~iE-L~Als~~~~v~I~V~~~d~~~~~~~i~~f~-----~~~--~~~~I~L~Y~g~~HYdsl~~~~ 161 (185)
T 3phx_A 101 WGSTLE-ASMLAKEMGITIIIWTVAASDEVEAGIKFG-----DGD--VFTAVNLLHSGQTHFDALRILP 161 (185)
T ss_dssp CCBHHH-HHHHHHHHCCCEEEEEC--CCBCCEEEEES-----SCC--TTTSEEEEEETTTEEEEEEECG
T ss_pred cCcHHH-HHHHHHHHCCcEEEEEecCCCCceEEEEcC-----CCC--CCCEEEEEECCCcCchhceECC
Confidence 999985 58999999999998875322 2221 211 2689999998669999999853
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.69 E-value=3.4e-17 Score=152.97 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=101.5
Q ss_pred hcccccCCCCCcchHHHHhHhcCC-chh-----HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHHHhccCCCCCCCCc
Q 045719 194 HHIKDVAPDGNCGFRAIADLMGFG-ENG-----WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIHAISYFENCPGSDK 267 (384)
Q Consensus 194 ~~i~dV~gDGnCgFRAiA~~Lg~~-ed~-----~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~~L~~~~~~a~~~k 267 (384)
..|+.|+|||||.|||||+||+.+ ++. |..||+.++++|++|++++ ++ +..|++|++.+ ..++.
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~--~~~feeY~~~m------~~~g~ 100 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LV--GLSLEDYLKRM------LSDNE 100 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HH--CCCHHHHHHHH------HSTTC
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hc--CCCHHHHHHHh------cCCCc
Confidence 567788999999999999999988 566 9999999999999999882 22 34699999998 45689
Q ss_pred cccccchhHHhhhhcceEEEEEccCcc---eecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCC-C--CCCCCcchh
Q 045719 268 WMTMPDMGHLIASAYNIVVFHLSMKQC---LTFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPG-H--PIPHVAINW 341 (384)
Q Consensus 268 Wl~~p~~g~iiAn~ynrpVi~ls~~~s---~tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~-~--piP~~~~~W 341 (384)
|++..+ ..++|..|+++|++++.+.. .... .++ +.. ..++|+|+|.+++||.+|....+ . +.+|.+..=
T Consensus 101 WGG~iE-L~AlS~~~~v~I~V~~~d~~g~~~~i~-~fg-e~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~l~~ 175 (219)
T 3phu_A 101 WGSTLE-ASMLAKEMGITIIIWTVAASDEVEAGI-KFG-DGD--VFTAVNLLHSGQTHFDALRILPQFETDTREALSLMD 175 (219)
T ss_dssp CCCHHH-HHHHHHHTTCCEEEEEESSSSBEEEEE-EES-SCC--TTTSEEEEEETTTEEEEEEECTTTCCSCCCCCCHHH
T ss_pred cCCHHH-HHHHHHHhCCCEEEEEecCCCCceeEE-Eec-CCC--CCCeEEEEECCCcCchhheECCCCCCCCCcchhHHH
Confidence 999985 58999999999998864322 1111 112 221 26899999986799999998643 3 233333321
Q ss_pred hhhc--cccccCchHHHH
Q 045719 342 QRFH--SFCAKGWETIYN 357 (384)
Q Consensus 342 ~~~~--~~~A~~W~~~~~ 357 (384)
+.-. .--+.+|++.++
T Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (219)
T 3phu_A 176 RVIAVDQLTSSSSDELQD 193 (219)
T ss_dssp HHHHHHHHHC--------
T ss_pred HHHHHHHHHhccHHhhhh
Confidence 2111 233567766554
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.44 E-value=3.9e-13 Score=126.76 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=96.3
Q ss_pred HHhhhhcccccCCCCCcchHHHH----------------------------hHhcCCch---------------------
Q 045719 189 LQSYIHHIKDVAPDGNCGFRAIA----------------------------DLMGFGEN--------------------- 219 (384)
Q Consensus 189 l~~~i~~i~dV~gDGnCgFRAiA----------------------------~~Lg~~ed--------------------- 219 (384)
|..--..++.|.|||||+|||++ .++|.++.
T Consensus 35 L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edF~~~f~~ll~~i~~~~~ 114 (234)
T 1tff_A 35 LSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGS 114 (234)
T ss_dssp HHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhhheeecCCCccHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445678999999999999999 24565533
Q ss_pred ----------------hHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhc
Q 045719 220 ----------------GWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAY 282 (384)
Q Consensus 220 ----------------~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~y 282 (384)
.-..+|.....+|++|+++|.+++.++..+++++. .+ .+.++|++...+ .+||+++
T Consensus 115 ~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~v------e~~~~~~~~iei-~ALa~aL 187 (234)
T 1tff_A 115 VSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEV------EPMATECDHIQI-TALSQAL 187 (234)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHh------hhhhcccccHHH-HHHHHHh
Confidence 12346777788999999999999977668999998 55 467899999865 8999999
Q ss_pred ceEEEEEccCcce-ecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCC
Q 045719 283 NIVVFHLSMKQCL-TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPG 331 (384)
Q Consensus 283 nrpVi~ls~~~s~-tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~ 331 (384)
+++|.++..+.+. .+-+... |+. ..+.|+|+|. +.||.+|+.+++
T Consensus 188 ~v~I~V~~~d~~~~~~~~~~~-~~~--~~~~I~LlY~-pgHYdily~~~~ 233 (234)
T 1tff_A 188 SIALQVEYVDEMDTALNHHVF-PEA--ATPSVYLLYK-TSHYNILYAADK 233 (234)
T ss_dssp TCCEEEEECC-------CCCC-CCC--SSCSEEEEEE-TTEEEEEEECCC
T ss_pred CCCEEEEEcCCCCCccccccC-CCC--CCCeEEEEEC-CCCceecccCCC
Confidence 9999888765443 2222222 222 2577999998 569999998754
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.02 E-value=8.7e-10 Score=106.33 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhcceEEEEEccCcc-------e
Q 045719 224 VRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQC-------L 295 (384)
Q Consensus 224 VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~s-------~ 295 (384)
+|.....+|+.|+++|.+|+.+...+++|+. .+ .+.++|++...+ .+||++++++|-+.-.+.+ .
T Consensus 173 LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eV------e~~~~e~d~leI-~ALa~aL~v~I~V~ylDrs~g~~v~~h 245 (284)
T 4dhi_B 173 FRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEI------EPMWKDADHLAI-NSLIKAAGTRVRIEYMDRTAAPNGGWH 245 (284)
T ss_dssp HHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHT------SSTTCCCCHHHH-HHHHHHTTCCEEEEESSGGGCTTSSSE
T ss_pred HHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhc------eehhhcccHHHH-HHHHHHhCCcEEEEEecCCCCCCCccc
Confidence 4555666788999999999977667999998 55 467899999854 8999999998866543221 2
Q ss_pred ecccCCCCCCCCCCCCeEEEEEecCCcceEeecCCCC
Q 045719 296 TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVFLLPGH 332 (384)
Q Consensus 296 tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~lk~~~ 332 (384)
..||-... +..+.|.|.|. +.||..|+.++..
T Consensus 246 ~~fp~~~~----~~~p~I~LLYr-pgHYDILY~~~p~ 277 (284)
T 4dhi_B 246 YDIPSDDQ----QIAPEITLLYR-PGHYDVIYKKDST 277 (284)
T ss_dssp EEESCCCS----CCCCSEEEEEE-TTEEEEEEECC--
T ss_pred ccCCCCCC----CCCCEEEEeec-CCCccccccCCCC
Confidence 21454321 12467999997 7899999988743
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.99 E-value=1e-09 Score=110.74 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccccccchhHHhhhhcceEEEEEccCc--ceec
Q 045719 221 WLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMKQ--CLTF 297 (384)
Q Consensus 221 ~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~~--s~tf 297 (384)
...+|.....+|++|.++|.+++.+...+++++. .+ -+.++|.+...+ .+||+++|++|.++-.+. ....
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~v------e~~~~e~d~l~I-~ALa~al~v~I~V~yld~~~~~~v 372 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKESDHIHI-IALAQALSVSIQVEYMDRGEGGTT 372 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHT------SSTTCCBCHHHH-HHHHHHHTCCCEEEECSCCSSSCC
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhc------eeHHhhCcHHHH-HHHHHHcCCcEEEEEcCCCCCCcc
Confidence 3446666778899999999999977667999998 54 467899999865 899999999887653222 1122
Q ss_pred ccCCCCCCCCCCCCeEEEEEecCCcceEee
Q 045719 298 LPLRSNPVPTDSRKEIAIGFVNNNHFVEVF 327 (384)
Q Consensus 298 fPl~~~P~~~~~~~pI~La~v~~nHFvsl~ 327 (384)
-+... |.. ..+.|+|.|. +.||..|+
T Consensus 373 ~~~~~-~~~--~~~~I~LLYr-PgHYDiLY 398 (399)
T 4ddg_A 373 NPHIF-PEG--SEPKVYLLYR-PGHYDILY 398 (399)
T ss_dssp CEEET-TTT--CCCCCEEEEE-TBEEEEEE
T ss_pred ceeeC-CCC--CCCEEEEEEc-CCccccCC
Confidence 12211 222 2578999996 78999987
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=98.77 E-value=9e-09 Score=96.85 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=92.9
Q ss_pred hhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhhhhcccccCChhHHHHHHH-HhccCCCCCCCCccc
Q 045719 191 SYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNMEHYSHLYGTYERVNELIH-AISYFENCPGSDKWM 269 (384)
Q Consensus 191 ~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~~~Y~~~~~~~~~~~~~l~-~L~~~~~~a~~~kWl 269 (384)
..+.+|.+ ..||+|.++|+.+++ .+...-..+|.....+|+.|+++|.+++.++..+++++. .+ .++++|.
T Consensus 107 ~ll~~i~~-~~~~~~L~~~fndq~-~s~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~v------e~~~~~~ 178 (234)
T 2zfy_A 107 DLIEQVEK-QTSVADLLASFNDQS-TSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEV------EPMCKES 178 (234)
T ss_dssp HHHHHHHT-TCCHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHT------SSTTCCC
T ss_pred HHHHHHHc-CCCHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHh------hhHhhcC
Confidence 34455544 349999999999996 345677889999999999999999999987678999997 45 4578999
Q ss_pred cccchhHHhhhhcceEEEEEccCcce--ecccCCCCCCCCCCCCeEEEEEecCCcceEee
Q 045719 270 TMPDMGHLIASAYNIVVFHLSMKQCL--TFLPLRSNPVPTDSRKEIAIGFVNNNHFVEVF 327 (384)
Q Consensus 270 ~~p~~g~iiAn~ynrpVi~ls~~~s~--tffPl~~~P~~~~~~~pI~La~v~~nHFvsl~ 327 (384)
+...+ .+||++++++|.++..+.+. ..-...- |+. ..+.|+|+|. +.||.+|+
T Consensus 179 ~~i~i-~ALa~al~v~I~V~~~d~~~~~~v~~~~f-~~~--~~p~I~LlY~-pgHYdiLy 233 (234)
T 2zfy_A 179 DHIHI-IALAQALSVSIQVEYMDRGEGGTTNPHIF-PEG--SEPKVYLLYR-PGHYDILY 233 (234)
T ss_dssp CHHHH-HHHHHHHTCCEEEEECC-CCSSCCEEEEE-STT--CCCSEEEEEE-TTEEEEEE
T ss_pred CHHHH-HHHHHHhCCCEEEEEcCCCCCCcccceeC-CCC--CCCeEEEEEC-CCCcccCC
Confidence 99855 89999999999887754332 1111111 111 2578999998 56999987
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.71 E-value=1.2e-07 Score=93.41 Aligned_cols=132 Identities=21% Similarity=0.192 Sum_probs=91.0
Q ss_pred cccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhh--hhcc----------cc------cCC---hhHHHHHHHH
Q 045719 197 KDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM--EHYS----------HL------YGT---YERVNELIHA 255 (384)
Q Consensus 197 ~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~--~~Y~----------~~------~~~---~~~~~~~l~~ 255 (384)
....|||||+.+|++..|-.-.|.-..+|+.|..-|+... .++. .+ |.. ...++.+++.
T Consensus 115 L~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~ 194 (390)
T 3dkb_A 115 LKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKM 194 (390)
T ss_dssp BCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHH
T ss_pred EEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHH
Confidence 4568999999999999987778999999999998888632 1111 01 111 2567777776
Q ss_pred hccCCCCCCCCcccccc--chhHHhhhhcceEEEEEcc--------C-------cceecccCCCCCCCCCCCCeEEEEEe
Q 045719 256 ISYFENCPGSDKWMTMP--DMGHLIASAYNIVVFHLSM--------K-------QCLTFLPLRSNPVPTDSRKEIAIGFV 318 (384)
Q Consensus 256 L~~~~~~a~~~kWl~~p--~~g~iiAn~ynrpVi~ls~--------~-------~s~tffPl~~~P~~~~~~~pI~La~v 318 (384)
..........+.=+.-. -|-+++|+..+||||+|+. + .+.+|+|+..+|..+. ..||+|||-
T Consensus 195 Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~-rsPI~LgY~ 273 (390)
T 3dkb_A 195 ASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECY-RYPIVLGYD 273 (390)
T ss_dssp TSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSC-SSCEEEEEC
T ss_pred hCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHcc-CCceEEEec
Confidence 52211112222212111 2778899999999999952 1 1468999999886663 569999997
Q ss_pred cCCcceEeecCC
Q 045719 319 NNNHFVEVFLLP 330 (384)
Q Consensus 319 ~~nHFvsl~lk~ 330 (384)
.+||.+|....
T Consensus 274 -s~HFsaLV~me 284 (390)
T 3dkb_A 274 -SHHFVPLVTLK 284 (390)
T ss_dssp -SSCEEEEEEBC
T ss_pred -cCceeeeeecc
Confidence 59999999854
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.54 E-value=2.3e-07 Score=92.78 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=88.6
Q ss_pred ccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHHHhh-hhcccc----------cC-----Ch----hHHHHHHHHhc
Q 045719 198 DVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELHLNM-EHYSHL----------YG-----TY----ERVNELIHAIS 257 (384)
Q Consensus 198 dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~~~~-~~Y~~~----------~~-----~~----~~~~~~l~~L~ 257 (384)
...|||||..+|++..|-.-.|....+|+.|...|++.. .+|... ++ ++ ..++.++....
T Consensus 193 ~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As 272 (454)
T 3zrh_A 193 WNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLAS 272 (454)
T ss_dssp CCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred eecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhc
Confidence 458999999999999998889999999999999988621 222211 11 22 23444554331
Q ss_pred cCCCCCCCCccccccchhHHhhhhcceEEEEEccC--------------cceecccCCCCCCCCCCCCeEEEEEecCCcc
Q 045719 258 YFENCPGSDKWMTMPDMGHLIASAYNIVVFHLSMK--------------QCLTFLPLRSNPVPTDSRKEIAIGFVNNNHF 323 (384)
Q Consensus 258 ~~~~~a~~~kWl~~p~~g~iiAn~ynrpVi~ls~~--------------~s~tffPl~~~P~~~~~~~pI~La~v~~nHF 323 (384)
+++.=|.. -|-+++|+..+||||+|+.. .+..|+|+.-+|.-+. ..||+|||- ..||
T Consensus 273 ------~Pg~sLEe-iHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~-rsPIvLgY~-~gHF 343 (454)
T 3zrh_A 273 ------QPGASLEQ-THIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCW-KSPIALGYT-RGHF 343 (454)
T ss_dssp ------STTCCCCH-HHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSC-SCCEEEEEE-TTEE
T ss_pred ------CCcchHHH-HHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhc-CCceEEEec-ccce
Confidence 22221211 27788999999999999841 2358999999876553 579999997 5799
Q ss_pred eEeecCCC
Q 045719 324 VEVFLLPG 331 (384)
Q Consensus 324 vsl~lk~~ 331 (384)
.+|...++
T Consensus 344 saLV~~~~ 351 (454)
T 3zrh_A 344 SALVAMEN 351 (454)
T ss_dssp EEEEEBCC
T ss_pred eeeeeccc
Confidence 99998654
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=95.14 E-value=0.012 Score=55.07 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=25.0
Q ss_pred hhcccccCCCCCcchHHHHhH----hcCCchhHHHHHHH
Q 045719 193 IHHIKDVAPDGNCGFRAIADL----MGFGENGWLQVRKD 227 (384)
Q Consensus 193 i~~i~dV~gDGnCgFRAiA~~----Lg~~ed~~~~VR~~ 227 (384)
-..++.|.|||||+|||++-+ |..+.+.+..+.+.
T Consensus 42 y~~~R~vRgDGNCFyRaf~f~ylE~ll~~~~e~~r~~~~ 80 (234)
T 2zfy_A 42 YSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAV 80 (234)
T ss_dssp CCEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccceeeccCCccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 347889999999999999854 45455555554433
No 12
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.42 E-value=55 Score=23.53 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=37.2
Q ss_pred hhhhhHHHHhhhhcccccCCCCCcchHHHHhHhcCCchhHHHHHHHHHHHHH
Q 045719 182 VNEFPAALQSYIHHIKDVAPDGNCGFRAIADLMGFGENGWLQVRKDLLNELH 233 (384)
Q Consensus 182 ~~q~p~~l~~~i~~i~dV~gDGnCgFRAiA~~Lg~~ed~~~~VR~~li~el~ 233 (384)
++++|..-+..+.-..-..|+...-+..||..||.++..-.......++.|+
T Consensus 8 l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556665555554444455666799999999999998777777777777776
Done!