BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045720
(745 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 355 bits (912), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 228/625 (36%), Positives = 336/625 (53%), Gaps = 44/625 (7%)
Query: 141 KDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA-TCNNKLIGVRNFF 199
+ S +++GVLDTGI P PSF+DEG PPP KW+G CE CN K+IG R++
Sbjct: 16 RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYH 75
Query: 200 CGKDGSA------IDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVC 253
G+ S D V AN++G GTA G PLA +A YKVC
Sbjct: 76 IGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVC 135
Query: 254 NPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXX-XQFYDNGIAKATFEAIRRGIFVSIA 312
N C ++ ++A D AI DGVD+ ++ + IA +F A+ RGI S +
Sbjct: 136 W-NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNS 194
Query: 313 AGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPL 372
AGN GPN +T + +PW+L+V AST+DR V++GN +++ G ++ ++ PL
Sbjct: 195 AGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSI---NTFDNQYYPL 251
Query: 373 V----YPD-ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNA-GGAAMILM--N 424
V P+ + ST+ FC+ +++ +KGK+V+C+ + + GAA +LM N
Sbjct: 252 VSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSN 311
Query: 425 DELFGDSTLIQRNSL-PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVA 483
+ DS + + L PN + + YI S SP A + K T I SAP VV+
Sbjct: 312 TRDYADSYPLPSSVLDPNDLL------ATLRYIYSIRSP-GATIFKSTTILNASAPVVVS 364
Query: 484 FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA--NRVYTFDIVSGTSMACPHLSG 541
FS RGP+R + ++KPDI GPG+ I+AAW +V P+ R F+I+SGTSM+CPH++G
Sbjct: 365 FSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVGGIRRNTLFNIISGTSMSCPHITG 423
Query: 542 VAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601
+A +K+ +P WS AAIKSA+MTTA +N P + +A G+G VNP KA
Sbjct: 424 IATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAE--------FAYGSGHVNPLKAVR 475
Query: 602 PGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVSSIPEAELNYPSFSIKLGYSP 661
PGLVYD DY+ +LCG Y + V+ I C ++ +LNYPSF + + S
Sbjct: 476 PGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQ 535
Query: 662 ---QTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNT 718
Q ++RT+T+V S Y + AP+G+ I+V P+ +SF + ++ T T G+
Sbjct: 536 TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSF--TLTVRGSI 593
Query: 719 NASSAQAYLSWVSDKYTVKSPIAIS 743
A L W + V+SPI I+
Sbjct: 594 KGFVVSASLVWSDGVHYVRSPITIT 618
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 236/650 (36%), Positives = 340/650 (52%), Gaps = 47/650 (7%)
Query: 129 NFLGLHRSSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKC----ELV 184
+FL L+ SSG W S G+ VI+ VLD+GI P SF D+GMP P +W+G C +
Sbjct: 6 DFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFN 65
Query: 185 GATCNNKLIGVRNFFCG----------KDGSAIDYXXXXXXXXXXXXXNFVHGANIFGQA 234
+ CN KLIG F G SA D NF G + FG A
Sbjct: 66 ASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYA 125
Query: 235 NGTAVGMAPLAHLAVYKVC-NPNVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXXQFYDN 293
GTA G+AP A LAVYK N + S +IA +D A+ DGVD+ Y++
Sbjct: 126 PGTARGVAPRARLAVYKFSFNEGTFT--SDLIAAMDQAVADGVDMISISYGYRFIPLYED 183
Query: 294 GIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQET 353
I+ A+F A+ +G+ VS +AGN GP +L N +PW+L V + DR ++ LGN
Sbjct: 184 AISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN--- 240
Query: 354 YDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVD-VKGKVVLCQRGASGDDV 412
G + W+ P++ P N + + S E L V+ + +V+C D
Sbjct: 241 --GLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQ 298
Query: 413 LNAGGAAMILMNDELFGDSTLIQRNSLPN--VRVSHAVSESIKAYINSTSSPTAALVMKG 470
+ A + + D + + + PN V V+ + + Y+ ++ +PTA + +
Sbjct: 299 MRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQE 358
Query: 471 TVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA---NRVYTFD 527
T + AP V A S RGPSR GI KPDI+ PG+ I+AA+ V + N + + D
Sbjct: 359 TYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTD 418
Query: 528 IV--SGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTR---- 581
+ SGTSMA PH +G+AA+LK+AHP WS +AI+SAMMTTAD ++ KPI D
Sbjct: 419 YILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAA 478
Query: 582 LPADLYAVGAGQVNPSKANDPGLVYDIQPDDYIPYLCGLNYTDEQVQSIVDREVQCAKVS 641
P D+ GAG V+P++A DPGLVYD P DY+ LC LN+T+EQ ++I +
Sbjct: 479 TPLDM---GAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIA--RSSASHNC 533
Query: 642 SIPEAELNYPSF----SIKLGYS--PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPH 695
S P A+LNYPSF SI+ ++ Q + RTVTNVGK + Y ++ AP+ I+V P
Sbjct: 534 SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQ 593
Query: 696 NISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSD--KYTVKSPIAIS 743
+ F KN+K +Y++T G+ S ++WV ++V+SPI S
Sbjct: 594 ILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 16/121 (13%)
Query: 481 VVAFSGRGPSRISPGILKPDIIGPGLNIIAAWK--TTVDPLANRVYTFDIVSGTSMACPH 538
+ FS RGP+ + LKP+++ PG IIAA T++ N YT GT+MA PH
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYT--AAPGTAMATPH 364
Query: 539 LSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSK 598
++G+AALL AHP+W+ +K+A++ TAD V + I D A GAG+VN K
Sbjct: 365 VAGIAALLLQAHPSWTPDKVKTALIETADIVKPD--EIADI--------AYGAGRVNAYK 414
Query: 599 A 599
A
Sbjct: 415 A 415
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 234 ANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED----GVDVXXXXXXXXXXQ 289
+NG GMAP A L KV N S +I G+D A+++ G+ V
Sbjct: 195 SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSS 254
Query: 290 FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVN--DAPWMLTVGA 335
+ +++A A G+ V +AAGNSGPN YT+ + A ++TVGA
Sbjct: 255 DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++GVAAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGVAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTA---DTVNLEGKPILDC 579
+ + TA NL G +++
Sbjct: 242 NHLKNTATGLGNTNLYGSGLVNA 264
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + V L Y SGT+M
Sbjct: 156 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIVSTLPGNKYGAK--SGTAM 213
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + V L Y SGT+M
Sbjct: 156 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIVSTLPGNKYGAK--SGTAM 213
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GTSMA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y SGTSM
Sbjct: 156 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAK--SGTSM 213
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y SGTSM
Sbjct: 156 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAK--SGTSM 213
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y +SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 183 VGPELDVMAPGVSICSTLPGGKY--GALSGTSMASPHVAGAAALILSKHPNWTNTQVRSS 240
Query: 562 MMTTA 566
+ TA
Sbjct: 241 LENTA 245
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTSM
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTSM
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSIXSTLPGNKY--GAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSICSTLPGNKYGAK--SGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSICSTLPGNKYGAK--SGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSIXSTLPGNKY--GAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y +SGT+MA PH++G AAL+ S HPNW++ ++S+
Sbjct: 183 VGPELDVMAPGVSICSTLPGGKY--GALSGTAMASPHVAGAAALILSKHPNWTNTQVRSS 240
Query: 562 MMTTA 566
+ TA
Sbjct: 241 LENTA 245
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GT MA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GT MA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y SGT M
Sbjct: 156 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAK--SGTXM 213
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 214 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GT MA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 12/83 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI+ PG+N+ + + + T+ ++GT MA PH++G AAL+K +P+WS+ I+
Sbjct: 191 DIVAPGVNVQSTYPGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 560 SAMMTTADTV---NLEGKPILDC 579
+ + TA ++ NL G +++
Sbjct: 242 NHLKNTATSLGSTNLYGSGLVNA 264
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTSM
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTSM
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTSM
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGTSMA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSIQSTLPGNKYGAK--SGTSMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y SGT M
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAK--SGTXM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y SGT M
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYSGTXM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 17/89 (19%)
Query: 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536
S+ Q +FS GP D++ PG++I W T N+ + SGT MA
Sbjct: 170 SSNQRASFSSVGPEL--------DVMAPGVSI---WSTLP---GNK---YGAKSGTXMAS 212
Query: 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 213 PHVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 513 KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLE 572
TTV N+ Y + +GTSMA PH+SGVA L+ S HP S + +++A+ TAD +++
Sbjct: 351 STTVSNQGNQDYEY--YNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA 408
Query: 573 GK 574
G+
Sbjct: 409 GR 410
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GT M
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTXM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GT M
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTXM 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 502 IGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561
+GP L+++A + L Y SGT MA PH++G AAL+ S HPNW++ ++S+
Sbjct: 192 VGPELDVMAPGVSIQSTLPGNKY--GAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSS 249
Query: 562 MMTT 565
+ T
Sbjct: 250 LENT 253
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 482 VAFSGRGPSRISPGILKPD-------IIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534
V + G+ PS I+ G + +GP L+++A + L Y +GTS
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKY--GAYNGTSX 222
Query: 535 ACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565
A PH++G AAL+ S HPNW++ ++S++ T
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 35/220 (15%)
Query: 395 DVKGKVVLCQRGA--SGDDVLNA--GGAAMILMNDELFGDSTLIQRNSLPNVRVSHA--V 448
DVKGK+ L +RG D + NA GA +L+ D + LPNV A +
Sbjct: 287 DVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPI----ELPNVDQMPAAFI 342
Query: 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNI 508
S + S T V+ S ++ FS G + + G +KPDI PG +I
Sbjct: 343 SRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLT--ADGNIKPDIAAPGQDI 400
Query: 509 IAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH--------PNWSHAAIKS 560
+++ +AN Y +SGTSM+ P ++G+ LL+ + P+ K
Sbjct: 401 LSS-------VANNKYA--KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKK 451
Query: 561 AMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAN 600
+M++A + E + R GAG V+ KA+
Sbjct: 452 VLMSSATALYDEDEKAYFSPR------QQGAGAVDAKKAS 485
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTA 566
T+ +GTSMA PH++G AAL+ S HP W++A ++ + +TA
Sbjct: 213 TYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 63/177 (35%), Gaps = 47/177 (26%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G V + V+D+GI HP N RG V + N +DGS
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLN----------VRGGASFVPSETNPY----------QDGS 62
Query: 206 AIDYXXXXXXXXXXXXXNFVHGANIFGQA----NGTAV-GMAPLAHLAVYKVCNPNVYCP 260
+ HG ++ G N V G+AP A L KV +
Sbjct: 63 S-------------------HGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQ 103
Query: 261 ESAVIAGIDAAIEDGVDVXXXXXXXXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
S +I GI+ AI + +DV + +A+ GI V+ AAGN G
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGGPTG---STALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 196 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 196 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 197 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 248 NRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 197 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 247
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 248 NRLSSTA 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 196 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GTSMA PH++G AAL+ S HPN S + ++
Sbjct: 196 EVMAPGAGVYSTYPTN---------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI PG +I ++W T+ + +SGTSMA PH++GVAAL +PN S A +
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-------NTISGTSMASPHVAGVAALYLDENPNLSPAQVT 250
Query: 560 SAMMT--TADTV 569
+ + T TAD V
Sbjct: 251 NLLKTRATADKV 262
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG +I +AW T+ ++GTSMA PH++GVAAL +P+ + A++
Sbjct: 196 DLFAPGASIPSAWYTSDTAT-------QTLNGTSMATPHVAGVAALYLEQNPSATPASVA 248
Query: 560 SAMMTTADTVNLEG 573
SA++ A T L G
Sbjct: 249 SAILNGATTGRLSG 262
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTA 566
T+ +GT MA PH++G AAL+ S HP W++A ++ + +TA
Sbjct: 213 TYGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 63/177 (35%), Gaps = 47/177 (26%)
Query: 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS 205
G V + V+D+GI HP N RG V + N +DGS
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLN----------VRGGASFVPSETNPY----------QDGS 62
Query: 206 AIDYXXXXXXXXXXXXXNFVHGANIFGQA----NGTAV-GMAPLAHLAVYKVCNPNVYCP 260
+ HG ++ G N V G+AP A L KV +
Sbjct: 63 S-------------------HGTHVAGTIAALNNSIGVLGVAPSASLYAVKVLDSTGSGQ 103
Query: 261 ESAVIAGIDAAIEDGVDVXXXXXXXXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
S +I GI+ AI + +DV + +A+ GI V+ AAGN G
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGGPTG---STALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG + + + T T+ ++GT MA PH++G AAL+ S HPN S + ++
Sbjct: 196 EVMAPGAGVYSTYPTN---------TYATLNGTXMASPHVAGAAALILSKHPNLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 525 TFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTA 566
T+ +GT MA PH++G AAL+ S HP W++A ++ + +TA
Sbjct: 213 TYGAYNGTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+I PG ++ + W ++ +SGTSMA PH+SG+AA + + +P+ S+ ++
Sbjct: 226 EISAPGSSVYSTWYNG---------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLR 276
Query: 560 SAMMTTADTVNLEG 573
S + A +V+++G
Sbjct: 277 SNLQERAKSVDIKG 290
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 24/224 (10%)
Query: 331 LTVGASTIDRGITISVRLGNQETYDGEALWQWTDI--PSKRLPLVYPDARNHSTTTFCSP 388
LTV + + D+ +T +VR+ + D E T+ P+K Y + R F
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYAN-RGTKEDDFK-- 277
Query: 389 ETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448
DVKGK+ L +RG A + ++ + LPNV A
Sbjct: 278 ------DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAA 331
Query: 449 SESIKAYINSTSSPTAALVMKGT--VIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL 506
S K + +P + T V+ S ++ FS G + + G +KPDI PG
Sbjct: 332 FISRKDGLLLKDNPQKTITFNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQ 389
Query: 507 NIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+I+++ +AN Y +SGTS + P ++G+ LL+ +
Sbjct: 390 DILSS-------VANNKYA--KLSGTSXSAPLVAGIXGLLQKQY 424
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D++ PG++I++ NR + +SGTSMA PH++G+AALL S N + I+
Sbjct: 202 DVVAPGVDIVST------ITGNR---YAYMSGTSMASPHVAGLAALLASQGRN--NIEIR 250
Query: 560 SAMMTTADTVNLEG 573
A+ TAD ++ G
Sbjct: 251 QAIEQTADKISGTG 264
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP----LANRVYTFDIVSGTSMA 535
V FS RGP++ G +KPD++ PG I++A ++++ P AN + + GTSMA
Sbjct: 201 HVAQFSSRGPTK--DGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYMGGTSMA 257
Query: 536 CPHLSGVAALLK 547
P ++G A L+
Sbjct: 258 TPIVAGNVAQLR 269
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+I PG ++ + W ++ +SGT MA PH+SG+AA + + +P+ S+ ++
Sbjct: 226 EISAPGSSVYSTWYNG---------GYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLR 276
Query: 560 SAMMTTADTVNLEG 573
S + A +V+++G
Sbjct: 277 SNLQERAKSVDIKG 290
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG +I + + T+ T+ +SGTSMA PH++GVA LL S + S+ I+
Sbjct: 201 DVAAPGSSIYSTYPTS---------TYASLSGTSMATPHVAGVAGLLASQGRSASN--IR 249
Query: 560 SAMMTTADTVNLEG 573
+A+ TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 9/67 (13%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
+++ PG+++ + + + T+ ++GTSMA PH++G AAL+ S +P S + ++
Sbjct: 196 EVMAPGVSVYSTYPSN---------TYTSLNGTSMASPHVAGAAALILSKYPTLSASQVR 246
Query: 560 SAMMTTA 566
+ + +TA
Sbjct: 247 NRLSSTA 253
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 226 HGANIFGQA----NGTAV-GMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVXX 280
HG ++ G N T V G+AP L KV N + SA+++GI+ A ++G+DV
Sbjct: 63 HGTHVAGTVAALDNTTGVLGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVIN 122
Query: 281 XXXXXXXXQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317
+ +A +A GI V AAGNSG
Sbjct: 123 MSLGGPSGS---TALKQAVDKAYASGIVVVAAAGNSG 156
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANR----VYTFDIVSGTSMACPHLSGVAALLKSA----HP 551
D+ PG +I+ +TVD R Y+F ++GTSMA PH+SGVAAL+ SA +
Sbjct: 245 DLAAPGQDIL----STVDSGTRRPVSDAYSF--MAGTSMATPHVSGVAALVISAANSVNK 298
Query: 552 NWSHAAIKSAMMTTADTVN 570
N + A +K +++T N
Sbjct: 299 NLTPAELKDVLVSTTSPFN 317
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANR----VYTFDIVSGTSMACPHLSGVAALLKSA----HP 551
D+ PG +I+ +TVD R Y+F ++GTSMA PH+SGVAAL+ SA +
Sbjct: 245 DLAAPGQDIL----STVDSGTRRPVSDAYSF--MAGTSMATPHVSGVAALVISAANSVNK 298
Query: 552 NWSHAAIKSAMMTTADTVN 570
N + A +K +++T N
Sbjct: 299 NLTPAELKDVLVSTTSPFN 317
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANR----VYTFDIVSGTSMACPHLSGVAALLKSA----HP 551
D+ PG +I+ +TVD R Y+F ++GTSMA PH+SGVAAL+ SA +
Sbjct: 245 DLAAPGQDIL----STVDSGTRRPVSDAYSF--MAGTSMATPHVSGVAALVISAANSVNK 298
Query: 552 NWSHAAIKSAMMTTADTVN 570
N + A +K +++T N
Sbjct: 299 NLTPAELKDVLVSTTSPFN 317
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 476 GSAPQVVAFSGR--GPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTS 533
G +V FS R G S +PG+ + PG + I + A T+D GTS
Sbjct: 323 GGTFRVAGFSSRSDGVSVGAPGVTILSTV-PGEDSIGYEGHNENVPATNGGTYDYYQGTS 381
Query: 534 MACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEG 573
MA PH++GV A+L PN I+ + TA N G
Sbjct: 382 MAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG 421
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
D+ PG I + + T+ T+ +SGTSMA PH++GVA LL S + S+ I+
Sbjct: 201 DVAAPGSWIYSTYPTS---------TYASLSGTSMATPHVAGVAGLLASQGRSASN--IR 249
Query: 560 SAMMTTADTVNLEG 573
+A+ TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 493 SPGILKPDIIGPGLNIIAAWKTTVDPLANRVY---TFD-------IVSGTSMACPHLSGV 542
+P ++ D+ PG ++ + T DP NR++ D +++GTS A P SG
Sbjct: 290 TPAMVTTDL--PGCDM--GYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGA 345
Query: 543 AALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPIL 577
ALL SA+P+ S ++ + +A V+ + +P++
Sbjct: 346 MALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 480 QVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP----LANRVYTFDIVSGTSMA 535
V FS RGP++ G +KPD++ PG I++A ++++ P AN + GTS A
Sbjct: 201 HVAQFSSRGPTK--DGRIKPDVMAPGTFILSA-RSSLAPDSSFWANHDSKYAYXGGTSXA 257
Query: 536 CPHLSGVAALLK 547
P ++G A L+
Sbjct: 258 TPIVAGNVAQLR 269
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
+S ++ D + G+G + V+DTGI HP F G+ ++V
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQMVKTY-------- 59
Query: 196 RNFFCGKDGSAIDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
++ +DG+ HG + G G+A L KV +
Sbjct: 60 --YYSSRDGNG-------------------HGTHCAGTVGSRTYGVAKKTQLFGVKVLDD 98
Query: 256 NVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXXQF---YDNGIAKATFEAIRRGIFVSIA 312
N S +IAG+D D + Y + + A G+ V++A
Sbjct: 99 NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVA 158
Query: 313 AGNSGPN--HYTLVNDAPWMLTVGAS 336
AGN+ + +Y+ ++ P + TVGAS
Sbjct: 159 AGNNNADARNYSPASE-PSVCTVGAS 183
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI GPG +I++ W + +SGTSMA PH++G+AA L +
Sbjct: 200 DIFGPGTDILSTWIGG---------STRSISGTSMATPHVAGLAAYLMT----LGKTTAA 246
Query: 560 SAMMTTADTVN 570
SA ADT N
Sbjct: 247 SACRYIADTAN 257
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 47/206 (22%)
Query: 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
+S ++ D + G+G + V+DTGI HP F G+ ++V
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQMVKTY-------- 59
Query: 196 RNFFCGKDGSAIDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
++ +DG+ HG + G G+A L KV +
Sbjct: 60 --YYSSRDGNG-------------------HGTHCAGTVGSRTYGVAKKTQLFGVKVLDD 98
Query: 256 NVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXXQF---YDNGIAKATFEAIRRGIFVSIA 312
N S +IAG+D D + Y + + A G+ V++A
Sbjct: 99 NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVA 158
Query: 313 AGNSGPN--HYTLVNDAPWMLTVGAS 336
AGN+ + +Y+ ++ P + TVGAS
Sbjct: 159 AGNNNADARNYSPASE-PSVCTVGAS 183
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI GPG +I++ W + +SGTSMA PH++G+AA L +
Sbjct: 200 DIFGPGTSILSTWIGG---------STRSISGTSMATPHVAGLAAYLMT----LGKTTAA 246
Query: 560 SAMMTTADTVN 570
SA ADT N
Sbjct: 247 SACRYIADTAN 257
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 218 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 220 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIK 559
DI GPG +I++ W + +SGTSMA PH++G+AA L +
Sbjct: 200 DIFGPGTSILSTWIGG---------STRSISGTSMATPHVAGLAAYLMT----LGKTTAA 246
Query: 560 SAMMTTADTVN 570
SA ADT N
Sbjct: 247 SACRYIADTAN 257
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 47/206 (22%)
Query: 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV 195
+S ++ D + G+G + V+DTGI HP F G+ ++V
Sbjct: 20 TSTYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQMVKTY-------- 59
Query: 196 RNFFCGKDGSAIDYXXXXXXXXXXXXXNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP 255
++ +DG+ HG + G G+ L KV +
Sbjct: 60 --YYSSRDGNG-------------------HGTHCAGTVGSRTYGVVKKTQLFGVKVLDD 98
Query: 256 NVYCPESAVIAGIDAAIEDGVDVXXXXXXXXXXQF---YDNGIAKATFEAIRRGIFVSIA 312
N S +IAG+D D + Y + + A G+ V++A
Sbjct: 99 NGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVA 158
Query: 313 AGNSGPN--HYTLVNDAPWMLTVGAS 336
AGN+ + +Y+ ++ P + TVGAS
Sbjct: 159 AGNNNADARNYSPASE-PSVCTVGAS 183
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 298 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 298 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 298 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 298 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 295 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 229 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT+MA PH+SGV AL+++A+
Sbjct: 229 QPEVSAPGVDILSTYPDD---------SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALL 546
DI PG +I + W + R T +SGTSMA PH++G+AA L
Sbjct: 201 DIFAPGTSITSTW------IGGRTNT---ISGTSMATPHIAGLAAYL 238
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT MA PH+SGV AL+++A+
Sbjct: 218 QPEVSAPGVDILSTYPDD---------SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 9/53 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH 550
+P++ PG++I++ + +++ + GT MA PH+SGV AL+++A+
Sbjct: 218 QPEVSAPGVDILSTYPDD---------SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 21/95 (22%)
Query: 480 QVVAFSGRGPSRISPG--ILKPD--IIGPGLNIIAAWKTTVDPLANRVYTFD----IVSG 531
+V FS RG R + I K D I PG + + W FD +SG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW-------------FDGGYATISG 247
Query: 532 TSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTA 566
TSMA PH +G+AA + + P S+ ++ + T A
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH-- 555
K I+ PG I+ A T +P+ ++GTSMA P ++G++ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGISALLMSLQVQQGKPV 316
Query: 556 --AAIKSAMMTTA 566
A+++A++ TA
Sbjct: 317 DAEAVRTALLKTA 329
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALL 546
DI PG NI++ W T + +SGTSMA PH+ G+ A L
Sbjct: 203 DIFAPGSNILSTWIGG---------TTNTISGTSMATPHIVGLGAYL 240
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH-- 555
K I+ PG I+ A T +P+ ++GTSMA P ++G++ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGISALLMSLQVQQGKPV 316
Query: 556 --AAIKSAMMTTA 566
A+++A++ TA
Sbjct: 317 DAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 498 KPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH-- 555
K I+ PG I+ A T +P+ ++GTSMA P ++G++ALL S
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVR--------LTGTSMAAPVMTGISALLMSLQVQQGKPV 298
Query: 556 --AAIKSAMMTTA 566
A+++A++ TA
Sbjct: 299 DAEAVRTALLKTA 311
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 500 DIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAAL 545
D+ PG I +AW + +SGTSMA PH++GVAAL
Sbjct: 196 DLFAPGSQIKSAWYDG---------GYKTISGTSMATPHVAGVAAL 232
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 12/51 (23%)
Query: 504 PGLNIIAAWKTTVD-----PLANRVYTFDIVSGTSMACPHLSGVAALLKSA 549
PG NI+ +T+D P+ + ++ + +GTSMA PH+SGVAAL+ SA
Sbjct: 250 PGTNIL----STIDVGQAGPVRS---SYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 12/54 (22%)
Query: 501 IIGPGLNIIAAWKTTVD-----PLANRVYTFDIVSGTSMACPHLSGVAALLKSA 549
+ PG NI+ +T+D P+ + ++ + +GTSMA PH+SGVAAL+ SA
Sbjct: 247 LAAPGTNIL----STIDVGQAGPVRS---SYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 528 IVSGTSMACPHLSGVAAL----LKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583
+ +GTS A PH++G AL LK + +S +IK A+ TA +
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------ 504
Query: 584 ADLYAVGAGQVNPSKA 599
D +A G G +N KA
Sbjct: 505 VDPFAQGHGLLNVEKA 520
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSF 165
W+ S G G IIGV+DTG HP
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDL 59
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSF 165
W+ S G G IIGV+DTG HP
Sbjct: 34 WRASAKGAGQIIGVIDTGXQVDHPDL 59
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSF 165
W+ S G G IIGV+DTG HP
Sbjct: 16 WRASAKGAGQIIGVIDTGCQVDHPDL 41
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 140 WKDSNFGKGVIIGVLDTGITPGHPSF 165
W+ S G G IIGV+DTG HP
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDL 59
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 657 LGYSPQTYHRTVTNVGKAKSF-YTRQMVAPEGV-EITVQPHNISFAAKNQKVTYSV--TF 712
LG+ P+T H TV G + S TR PEGV + T H K+ + V TF
Sbjct: 144 LGHEPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDGTF 203
Query: 713 TRTGNTNASSAQAYLSWVSDK 733
A Y WV DK
Sbjct: 204 YHEVTKEQVEAMGY-EWVFDK 223
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 386 CSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAM 420
C P T+ ++ GK L Q+ +GD+++N G +
Sbjct: 34 CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPL 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,037,631
Number of Sequences: 62578
Number of extensions: 923467
Number of successful extensions: 2318
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1978
Number of HSP's gapped (non-prelim): 287
length of query: 745
length of database: 14,973,337
effective HSP length: 106
effective length of query: 639
effective length of database: 8,340,069
effective search space: 5329304091
effective search space used: 5329304091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)