Query 045720
Match_columns 745
No_of_seqs 478 out of 3196
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 4.8E-51 1E-55 436.4 28.8 289 120-567 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 8.8E-51 1.9E-55 450.5 22.6 301 128-606 293-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 1.8E-49 3.8E-54 414.5 24.1 270 143-601 1-274 (275)
4 cd07478 Peptidases_S8_CspA-lik 100.0 2E-48 4.3E-53 432.9 31.2 402 144-592 1-455 (455)
5 cd07497 Peptidases_S8_14 Pepti 100.0 8.7E-49 1.9E-53 415.3 25.4 286 146-566 1-311 (311)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 1.1E-48 2.4E-53 405.6 25.4 242 140-569 1-253 (255)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 3.5E-48 7.7E-53 421.9 28.9 309 139-601 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 6.8E-47 1.5E-51 405.5 27.1 286 137-604 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.5E-46 3.3E-51 391.4 25.9 247 139-571 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.1E-45 2.3E-50 393.7 29.5 278 146-599 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 9E-46 1.9E-50 380.4 24.7 235 149-592 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 8.6E-45 1.9E-49 384.1 25.4 250 147-567 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 7.9E-45 1.7E-49 379.6 24.4 242 148-567 1-261 (261)
14 cd04857 Peptidases_S8_Tripepti 100.0 3.4E-44 7.3E-49 386.8 28.3 221 207-569 182-412 (412)
15 cd07481 Peptidases_S8_Bacillop 100.0 2.1E-44 4.6E-49 376.9 25.6 245 146-567 1-264 (264)
16 KOG1153 Subtilisin-related pro 100.0 1.9E-45 4.1E-50 380.0 15.0 332 39-567 79-461 (501)
17 cd07487 Peptidases_S8_1 Peptid 100.0 9.5E-44 2.1E-48 372.6 27.3 255 146-567 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 6E-44 1.3E-48 375.4 25.8 261 138-565 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 3.7E-43 8E-48 366.0 25.6 233 139-568 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 6.5E-43 1.4E-47 365.2 26.0 242 136-569 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 4.8E-43 1E-47 372.0 22.1 260 149-567 1-291 (291)
22 cd07494 Peptidases_S8_10 Pepti 100.0 1.5E-42 3.3E-47 366.8 24.4 249 136-570 10-286 (298)
23 cd07496 Peptidases_S8_13 Pepti 100.0 2.1E-42 4.5E-47 366.0 25.0 257 148-565 1-285 (285)
24 cd07490 Peptidases_S8_6 Peptid 100.0 4.8E-42 1E-46 357.6 25.7 250 148-567 1-254 (254)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 4.6E-42 1E-46 365.4 24.7 277 142-567 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 8.6E-42 1.9E-46 352.9 24.6 240 149-565 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 1.6E-41 3.4E-46 361.2 25.2 266 141-598 2-297 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 2.1E-41 4.5E-46 354.1 21.0 244 136-567 4-277 (277)
29 cd07477 Peptidases_S8_Subtilis 100.0 1.8E-40 3.9E-45 340.2 25.4 227 148-565 1-229 (229)
30 cd07473 Peptidases_S8_Subtilis 100.0 2.7E-40 5.9E-45 345.4 26.5 247 147-567 2-259 (259)
31 PF00082 Peptidase_S8: Subtila 100.0 1.6E-41 3.5E-46 359.2 14.9 272 150-601 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 1.3E-40 2.9E-45 342.5 21.2 210 146-549 2-229 (247)
33 cd04059 Peptidases_S8_Protein_ 100.0 3.1E-40 6.6E-45 352.0 19.2 247 136-567 28-297 (297)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.9E-39 6.3E-44 329.5 23.9 222 148-567 1-222 (222)
35 cd07482 Peptidases_S8_Lantibio 100.0 4.7E-39 1E-43 342.4 24.3 248 148-565 1-294 (294)
36 cd04848 Peptidases_S8_Autotran 100.0 3.9E-38 8.4E-43 330.3 23.4 242 145-567 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 5E-37 1.1E-41 325.2 26.5 359 39-601 48-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 2.8E-35 6.1E-40 324.9 24.1 238 210-601 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 6.3E-34 1.4E-38 291.9 17.1 194 206-565 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 3.7E-31 7.9E-36 272.0 25.1 233 149-565 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 4E-24 8.8E-29 243.9 23.2 273 136-601 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 2.2E-23 4.7E-28 210.8 10.8 304 136-622 150-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.8E-17 3.8E-22 180.7 14.6 100 238-341 83-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.1 7.9E-10 1.7E-14 104.3 11.1 113 366-491 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.0 2.9E-09 6.3E-14 98.3 12.4 117 346-465 2-125 (126)
46 KOG3525 Subtilisin-like propro 98.9 6.9E-09 1.5E-13 114.3 10.9 286 136-601 22-324 (431)
47 PF05922 Inhibitor_I9: Peptida 98.7 2E-08 4.3E-13 85.1 6.9 77 42-123 1-82 (82)
48 PF06280 DUF1034: Fn3-like dom 98.7 1.7E-07 3.8E-12 84.4 12.0 87 654-741 2-112 (112)
49 COG4934 Predicted protease [Po 98.4 2.4E-06 5.1E-11 101.4 13.5 94 238-335 288-395 (1174)
50 cd04816 PA_SaNapH_like PA_SaNa 98.3 2.8E-06 6E-11 77.9 8.4 91 369-462 18-118 (122)
51 cd02124 PA_PoS1_like PA_PoS1_l 98.2 1.2E-05 2.6E-10 74.0 11.8 92 370-462 28-125 (129)
52 cd04818 PA_subtilisin_1 PA_sub 98.2 6.3E-06 1.4E-10 75.0 9.7 82 382-464 26-116 (118)
53 cd02127 PA_hPAP21_like PA_hPAP 98.2 6.9E-06 1.5E-10 74.4 9.3 83 383-466 21-116 (118)
54 cd02122 PA_GRAIL_like PA _GRAI 98.2 6.5E-06 1.4E-10 76.7 9.1 83 383-465 44-137 (138)
55 cd02129 PA_hSPPL_like PA_hSPPL 98.2 1E-05 2.2E-10 72.9 9.2 86 368-458 20-114 (120)
56 PF02225 PA: PA domain; Inter 98.1 4E-06 8.7E-11 73.9 5.3 73 384-456 20-101 (101)
57 cd02130 PA_ScAPY_like PA_ScAPY 98.1 1.6E-05 3.4E-10 72.8 8.7 80 384-464 32-120 (122)
58 cd00538 PA PA: Protease-associ 98.0 1.6E-05 3.5E-10 73.0 8.3 80 383-462 30-122 (126)
59 cd02126 PA_EDEM3_like PA_EDEM3 98.0 1.8E-05 4E-10 72.7 8.5 80 383-463 27-123 (126)
60 cd02125 PA_VSR PA_VSR: Proteas 98.0 4.2E-05 9.1E-10 70.2 9.9 82 383-464 22-125 (127)
61 cd02132 PA_GO-like PA_GO-like: 97.9 3.7E-05 8.1E-10 72.0 8.7 78 383-463 48-136 (139)
62 cd04813 PA_1 PA_1: Protease-as 97.8 7.3E-05 1.6E-09 67.6 8.0 75 382-458 26-111 (117)
63 cd04817 PA_VapT_like PA_VapT_l 97.8 8.6E-05 1.9E-09 68.9 7.7 69 391-459 50-134 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 97.7 0.00014 3E-09 69.3 8.7 79 383-461 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.4 0.0011 2.3E-08 61.2 9.8 86 367-460 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.0 0.0028 6.1E-08 58.9 7.7 72 392-463 34-131 (134)
67 PF14874 PapD-like: Flagellar- 96.7 0.057 1.2E-06 47.4 14.1 83 659-744 19-101 (102)
68 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.16 3.4E-06 42.3 7.3 58 660-718 5-64 (78)
69 PF11614 FixG_C: IG-like fold 94.5 0.75 1.6E-05 41.6 12.3 57 661-718 32-88 (118)
70 PF06030 DUF916: Bacterial pro 94.2 0.44 9.5E-06 43.4 10.0 77 652-730 18-119 (121)
71 cd02128 PA_TfR PA_TfR: Proteas 94.0 0.14 3.1E-06 49.7 6.7 66 393-458 51-155 (183)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 93.1 0.22 4.7E-06 46.2 5.9 59 368-428 22-97 (137)
73 cd04814 PA_M28_1 PA_M28_1: Pro 91.8 0.39 8.6E-06 44.8 6.0 59 367-427 19-100 (142)
74 cd04822 PA_M28_1_3 PA_M28_1_3: 91.2 0.5 1.1E-05 44.6 6.1 59 368-428 20-101 (151)
75 KOG2442 Uncharacterized conser 90.2 1.1 2.3E-05 49.3 8.1 75 393-467 91-176 (541)
76 PF00345 PapD_N: Pili and flag 88.6 4.8 0.0001 36.5 10.3 70 659-730 13-89 (122)
77 cd02121 PA_GCPII_like PA_GCPII 87.7 0.75 1.6E-05 46.3 4.7 52 368-427 45-106 (220)
78 cd02131 PA_hNAALADL2_like PA_h 86.2 0.83 1.8E-05 42.8 3.8 34 394-427 37-75 (153)
79 COG1470 Predicted membrane pro 85.2 6.9 0.00015 43.2 10.5 72 659-730 396-468 (513)
80 KOG3920 Uncharacterized conser 84.3 1.5 3.3E-05 40.7 4.4 96 369-470 65-175 (193)
81 TIGR02745 ccoG_rdxA_fixG cytoc 79.8 7 0.00015 43.7 8.5 56 661-717 347-402 (434)
82 PF00635 Motile_Sperm: MSP (Ma 78.8 13 0.00028 32.6 8.5 54 661-717 19-72 (109)
83 PF07718 Coatamer_beta_C: Coat 74.0 32 0.00069 32.0 9.6 68 661-730 70-138 (140)
84 COG1470 Predicted membrane pro 74.0 38 0.00082 37.6 11.7 70 661-731 285-360 (513)
85 KOG4628 Predicted E3 ubiquitin 73.0 10 0.00023 40.6 7.2 74 384-457 63-148 (348)
86 cd04821 PA_M28_1_2 PA_M28_1_2: 65.3 26 0.00057 33.4 7.4 57 368-426 22-102 (157)
87 PF00927 Transglut_C: Transglu 63.7 45 0.00097 29.3 8.3 57 659-717 14-79 (107)
88 PF05506 DUF756: Domain of unk 59.2 36 0.00078 28.9 6.6 54 653-712 11-65 (89)
89 PF07705 CARDB: CARDB; InterP 58.5 86 0.0019 26.5 9.2 53 659-715 18-72 (101)
90 smart00635 BID_2 Bacterial Ig- 55.5 38 0.00083 28.1 6.1 40 689-733 4-43 (81)
91 PRK15098 beta-D-glucoside gluc 53.5 28 0.00061 42.2 6.8 56 660-717 667-730 (765)
92 PF07610 DUF1573: Protein of u 48.5 50 0.0011 24.1 5.0 45 665-712 1-45 (45)
93 PLN03080 Probable beta-xylosid 48.2 38 0.00082 41.1 6.8 78 661-739 685-778 (779)
94 PF12690 BsuPI: Intracellular 44.3 67 0.0014 26.9 5.8 55 662-717 2-73 (82)
95 PRK13203 ureB urease subunit b 43.7 74 0.0016 27.7 5.9 17 659-675 17-33 (102)
96 cd00407 Urease_beta Urease bet 42.2 78 0.0017 27.6 5.8 17 659-675 17-33 (101)
97 TIGR00192 urease_beta urease, 39.6 96 0.0021 27.0 5.9 17 659-675 17-33 (101)
98 PRK13202 ureB urease subunit b 36.8 1.2E+02 0.0027 26.5 6.2 14 662-675 21-34 (104)
99 PF00699 Urease_beta: Urease b 36.7 1.9E+02 0.0041 25.2 7.2 19 657-675 14-32 (100)
100 PRK15308 putative fimbrial pro 36.2 1.8E+02 0.0038 29.8 8.4 54 661-715 32-101 (234)
101 PRK13205 ureB urease subunit b 34.0 1.1E+02 0.0025 28.5 5.9 18 658-675 16-33 (162)
102 PF13598 DUF4139: Domain of un 33.6 1.7E+02 0.0037 31.1 8.5 24 662-685 244-267 (317)
103 PRK13201 ureB urease subunit b 33.5 1.2E+02 0.0026 27.7 5.8 17 659-675 17-33 (136)
104 PF01345 DUF11: Domain of unkn 32.0 1E+02 0.0023 25.0 5.0 32 659-690 40-72 (76)
105 PRK13198 ureB urease subunit b 31.5 2.4E+02 0.0051 26.6 7.5 20 656-675 42-61 (158)
106 PF08260 Kinin: Insect kinin p 31.4 22 0.00048 16.1 0.4 6 483-488 3-8 (8)
107 PRK09918 putative fimbrial cha 31.4 3.9E+02 0.0085 27.1 10.1 55 657-714 35-94 (230)
108 PF02845 CUE: CUE domain; Int 31.2 42 0.0009 24.0 2.2 23 544-566 6-28 (42)
109 PRK13204 ureB urease subunit b 30.0 1.4E+02 0.0031 28.0 5.8 20 656-675 37-56 (159)
110 PF14016 DUF4232: Protein of u 29.4 4.3E+02 0.0093 24.0 9.2 80 660-740 18-112 (131)
111 PF11611 DUF4352: Domain of un 26.7 3.4E+02 0.0075 23.9 8.1 58 661-719 37-106 (123)
112 PRK15019 CsdA-binding activato 26.2 62 0.0014 30.5 3.0 33 527-560 77-109 (147)
113 TIGR03391 FeS_syn_CsdE cystein 26.1 60 0.0013 30.2 2.8 34 527-561 72-105 (138)
114 TIGR01451 B_ant_repeat conserv 25.0 2E+02 0.0042 21.8 5.0 32 659-690 11-43 (53)
115 PRK15188 fimbrial chaperone pr 24.8 7.3E+02 0.016 25.2 10.6 63 656-720 37-104 (228)
116 COG0832 UreB Urea amidohydrola 24.6 2.1E+02 0.0046 24.9 5.5 18 658-675 16-33 (106)
117 PF13940 Ldr_toxin: Toxin Ldr, 24.6 55 0.0012 22.2 1.6 13 534-546 14-26 (35)
118 PRK09296 cysteine desufuration 23.6 71 0.0015 29.7 2.8 33 527-560 67-99 (138)
119 TIGR02588 conserved hypothetic 23.1 4.7E+02 0.01 23.8 7.7 15 661-675 50-64 (122)
120 PRK15211 fimbrial chaperone pr 21.7 8.5E+02 0.018 24.8 10.4 61 657-720 33-99 (229)
121 PRK09926 putative chaperone pr 21.4 7E+02 0.015 25.6 10.0 62 656-720 35-107 (246)
122 COG2166 sufE Cysteine desulfur 21.3 79 0.0017 29.6 2.6 33 527-560 72-104 (144)
123 PRK13192 bifunctional urease s 21.2 3.4E+02 0.0073 26.9 6.9 21 655-675 122-142 (208)
124 PRK15299 fimbrial chaperone pr 20.9 7.8E+02 0.017 24.9 10.1 61 656-719 32-100 (227)
125 PRK15295 fimbrial assembly cha 20.8 8.8E+02 0.019 24.5 10.5 62 655-719 28-96 (226)
126 PF04255 DUF433: Protein of un 20.7 78 0.0017 24.3 2.1 39 525-563 10-54 (56)
127 PF02657 SufE: Fe-S metabolism 20.6 91 0.002 28.5 2.9 33 528-561 59-91 (125)
128 PF08821 CGGC: CGGC domain; I 20.5 4.9E+02 0.011 23.1 7.3 45 239-286 31-76 (107)
129 PRK15233 putative fimbrial cha 20.1 9E+02 0.02 24.9 10.2 59 659-720 53-116 (246)
130 PRK15218 fimbrial chaperone pr 20.1 4.8E+02 0.01 26.5 8.2 60 657-719 29-98 (226)
131 COG0065 LeuC 3-isopropylmalate 20.1 1E+02 0.0023 33.6 3.5 59 478-546 354-413 (423)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-51 Score=436.40 Aligned_cols=289 Identities=57% Similarity=0.852 Sum_probs=248.0
Q ss_pred ecccccCCCCccccCCCCC--cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCc----ccCcccc
Q 045720 120 LHLHTTHTPNFLGLHRSSG--FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGA----TCNNKLI 193 (745)
Q Consensus 120 ~~~~~~~s~~~~g~~~~~~--~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~----~~~~kv~ 193 (745)
+++++++++.++++....+ +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+.. .+++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 3678888999999876444 477799999999999999999999999999999999999999988766 4899999
Q ss_pred ceeeccCCCC-----------CCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChH
Q 045720 194 GVRNFFCGKD-----------GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPES 262 (745)
Q Consensus 194 g~~~~~~~~~-----------~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~ 262 (745)
+.++|.++.+ .++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++....+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 9999987542 14578899999999999999776655556566677999999999999999833568899
Q ss_pred HHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccce
Q 045720 263 AVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGI 342 (745)
Q Consensus 263 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 342 (745)
++++||++|++++++|||||||......+.+.+..++.++.++|++||+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645567788888889999999999999999988888888999999999830
Q ss_pred EEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEE
Q 045720 343 TISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMIL 422 (745)
Q Consensus 343 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~ 422 (745)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceee
Q 045720 423 MNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDII 502 (745)
Q Consensus 423 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~ 502 (745)
.||||+
T Consensus 236 --------------------------------------------------------------------------~~~di~ 241 (307)
T cd04852 236 --------------------------------------------------------------------------LKPDIA 241 (307)
T ss_pred --------------------------------------------------------------------------Ccccee
Confidence 477999
Q ss_pred eCCccEEeeccCCCCC-CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 503 GPGLNIIAAWKTTVDP-LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 503 APG~~I~sa~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|||.+|++++...... .......|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 242 apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 242 APGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999998742111 2233357999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=8.8e-51 Score=450.54 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=219.1
Q ss_pred CCccccCC--CCCccc--CCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCC--cccccccccCcccCccccceeeccCC
Q 045720 128 PNFLGLHR--SSGFWK--DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPA--KWRGKCELVGATCNNKLIGVRNFFCG 201 (745)
Q Consensus 128 ~~~~g~~~--~~~~~~--~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~--~~~~~~~~~~~~~~~kv~g~~~~~~~ 201 (745)
..+|+++. ++.+|+ .+.+|+||+|||||||||++||||.++-...... ..++....+. ..... +.+++|.++
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~n-G~vdd-~~G~nfVd~ 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNN-GNVDD-EYGANFVNN 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccC-Ccccc-cccccccCC
Confidence 34566654 455666 4578999999999999999999998642110000 0000000000 00111 335677765
Q ss_pred CCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEe
Q 045720 202 KDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSL 281 (745)
Q Consensus 202 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~ 281 (745)
.+ .+.|+.||||||||||||...++ . .+.||||+|+|+++|+++..+.+..+++++||+||++.|++||||
T Consensus 371 ~~-~P~D~~GHGTHVAGIIAA~gnN~-------~-Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 371 DG-GPMDDNYHGTHVSGIISAIGNNN-------I-GIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred CC-CCCCCCCcchHHHHHHhccccCC-------C-ceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 44 67899999999999999975322 1 248999999999999998334478899999999999999999999
Q ss_pred ccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC--------------cccC----CCCceEEecccccccceE
Q 045720 282 SFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY--------------TLVN----DAPWMLTVGASTIDRGIT 343 (745)
Q Consensus 282 SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--------------~~~~----~~p~vitVga~~~~~~~~ 343 (745)
|||+.. +...+..++.+|.++|++||+||||+|.... .++. ..+++|+|||...+.
T Consensus 442 SlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 442 SFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 999752 3456778888999999999999999986431 1222 346777777742110
Q ss_pred EEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEe
Q 045720 344 ISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILM 423 (745)
Q Consensus 344 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~ 423 (745)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeee
Q 045720 424 NDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIG 503 (745)
Q Consensus 424 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~A 503 (745)
...-.++.||+||. .++||+|
T Consensus 516 ----------------------------------------------------~~~~s~s~~Snyg~-------~~VDIaA 536 (639)
T PTZ00262 516 ----------------------------------------------------NNQYSLSPNSFYSA-------KYCQLAA 536 (639)
T ss_pred ----------------------------------------------------CCcccccccccCCC-------CcceEEe
Confidence 00012345666662 2359999
Q ss_pred CCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCC
Q 045720 504 PGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLP 583 (745)
Q Consensus 504 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~ 583 (745)
||++|+|+++.+ .|..++|||||||||||+||||++++|+|++.||+++|++||.++..
T Consensus 537 PG~dI~St~p~g---------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~------------ 595 (639)
T PTZ00262 537 PGTNIYSTFPKN---------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPS------------ 595 (639)
T ss_pred CCCCeeeccCCC---------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC------------
Confidence 999999999873 79999999999999999999999999999999999999999987632
Q ss_pred CCccccCC-CccCcCCCCCCCcee
Q 045720 584 ADLYAVGA-GQVNPSKANDPGLVY 606 (745)
Q Consensus 584 ~~~~~~G~-G~id~~~Al~~~lv~ 606 (745)
.+..+|| |+||+++|++..+-+
T Consensus 596 -~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 596 -LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCCccccCcEEcHHHHHHHHHhc
Confidence 1223333 899999999866644
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.8e-49 Score=414.52 Aligned_cols=270 Identities=27% Similarity=0.280 Sum_probs=204.8
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcc
Q 045720 143 SNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAG 222 (745)
Q Consensus 143 g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag 222 (745)
|++|+||+|+|||||||.+||++.+...+. +.+...+..... ...|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-------------------l~~~~~~~~~~~-~~~d~~gHGT~vAgii-- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-------------------LPGNVNVLGDLD-GGSGGGDEGRAMLEII-- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-------------------CCcceeeccccC-CCCCCCchHHHHHHHH--
Confidence 579999999999999999988654321111 111111111111 4567889999999999
Q ss_pred cCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCC-CCchHHHHHHH
Q 045720 223 NFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQF-YDNGIAKATFE 301 (745)
Q Consensus 223 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~-~~~~~~~a~~~ 301 (745)
.||||+|+|+.+|+.. ..+++++||+|++++|++|||||||....+. ....+..++.+
T Consensus 59 ----------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 59 ----------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred ----------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 3999999999988754 4788999999999999999999999865443 34467788888
Q ss_pred HHhC-CcEEEEecCCCCCCCC-cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCC
Q 045720 302 AIRR-GIFVSIAAGNSGPNHY-TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379 (745)
Q Consensus 302 a~~~-Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
+.++ |++||+||||+|.... ..++..|++|+|||...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------------------------- 164 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------------------------- 164 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------------------------
Confidence 8887 9999999999998643 4468899999999974332110000
Q ss_pred CCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcC
Q 045720 380 HSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINST 459 (745)
Q Consensus 380 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
|..
T Consensus 165 ------~~~----------------------------------------------------------------------- 167 (275)
T cd05562 165 ------DPA----------------------------------------------------------------------- 167 (275)
T ss_pred ------ccc-----------------------------------------------------------------------
Confidence 000
Q ss_pred CCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCc-cEEeeccCCCCCCCCcccceeeecCCcchhHH
Q 045720 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL-NIIAAWKTTVDPLANRVYTFDIVSGTSMACPH 538 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~ 538 (745)
. .......+.|+++||+. ++++||||+|||+ ++.+.... +.|..++||||||||
T Consensus 168 -----------~---~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~AaP~ 222 (275)
T cd05562 168 -----------P---GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSAAAPH 222 (275)
T ss_pred -----------c---CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchHHHHH
Confidence 0 00011345678899987 6789999999975 44555443 479999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 539 LSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 539 VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
|||++|||+|++|+|++.|||++|++||+++.. +..+..||||+||+.+|++
T Consensus 223 VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 223 AAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999998742 3466789999999999986
No 4
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2e-48 Score=432.95 Aligned_cols=402 Identities=24% Similarity=0.282 Sum_probs=250.4
Q ss_pred CCCCCeEEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccccCcccCccccceeecc-------CCCCC----CCCCCCC
Q 045720 144 NFGKGVIIGVLDTGITPGHPSFN-DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF-------CGKDG----SAIDYTG 211 (745)
Q Consensus 144 ~~G~Gv~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~-------~~~~~----~~~d~~g 211 (745)
++|+||+|||||||||+.||+|+ .++.+|+...|++....+.. ......+.++.. ...+. ...|+.|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~G 79 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP-PGGYYGGGEYTEEIINAALASDNPYDIVPSRDENG 79 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC-CccccCceEEeHHHHHHHHhcCCccccCcCCCCCC
Confidence 58999999999999999999999 46788999999998876532 111111111111 01111 4568899
Q ss_pred ChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC----------CChHHHHHHHHHHHhC-----CC
Q 045720 212 HGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY----------CPESAVIAGIDAAIED-----GV 276 (745)
Q Consensus 212 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g----------~~~~~i~~ai~~a~~~-----g~ 276 (745)
|||||||||||+..++ ..+.||||+|+|+++|++..... +..++++.||+|+++. .+
T Consensus 80 HGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p 151 (455)
T cd07478 80 HGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP 151 (455)
T ss_pred chHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999986432 23489999999999999983322 5688999999999874 47
Q ss_pred cEEEeccCCCCC-CCCCchHHHHHHHHHhC-CcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCcee
Q 045720 277 DVLSLSFGLGLS-QFYDNGIAKATFEAIRR-GIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETY 354 (745)
Q Consensus 277 dVIN~SlG~~~~-~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 354 (745)
.|||||||.... ....+.+++++..+.++ |++||+||||+|....+..+... .........+.++.++..
T Consensus 152 ~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~ 223 (455)
T cd07478 152 LVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKG 223 (455)
T ss_pred eEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcc
Confidence 899999998653 34567788888777765 99999999999987666543110 001112233444444433
Q ss_pred eeeecccCCCCCCCceeEEecCCCCCCC--cCCCCCCCCCCCcccceEEEEecCCc---------hhhhhhcCceEEEEe
Q 045720 355 DGEALWQWTDIPSKRLPLVYPDARNHST--TTFCSPETLKSVDVKGKVVLCQRGAS---------GDDVLNAGGAAMILM 423 (745)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~~~gkivl~~~~~~---------~~~~~~~ga~~~i~~ 423 (745)
....+|...+ ....+.++.+....... ...-............++.+..+... +..-....+.+.|..
T Consensus 224 ~~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~ 302 (455)
T cd07478 224 FNLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRL 302 (455)
T ss_pred eEEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEE
Confidence 3333443321 01111222111100000 00000000000001122222221111 111122344455444
Q ss_pred ecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecce-----Eec--CCCCCeeecccCCCCCCCCCCC
Q 045720 424 NDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGT-----VIG--GGSAPQVVAFSGRGPSRISPGI 496 (745)
Q Consensus 424 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~-----~~~--~~~~~~~a~fSs~Gp~~~~~g~ 496 (745)
........ .-+.|+|.-.+...+.. ++.. ++..+++.+.+ .++ +...+.++.||||||+. +++
T Consensus 303 ~~~~~~~g--~~~~Wlp~~~~~~~~t~----f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~ 372 (455)
T cd07478 303 TGVSITDG--RFDAWLPSRGLLSENTR----FLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGR 372 (455)
T ss_pred EeccCCCc--eEEEEecCcCcCCCCCE----eecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCC
Confidence 43221110 01345665544433322 2222 23345554432 122 23345799999999998 789
Q ss_pred ccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhC------CCCCHHHHHHHhhccccccc
Q 045720 497 LKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAH------PNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 497 ~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~ls~~~vk~~L~~TA~~~~ 570 (745)
+||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++||+++.
T Consensus 373 ~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~ 443 (455)
T cd07478 373 IKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP 443 (455)
T ss_pred cCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999986 489999999999999999999999865 56799999999999999874
Q ss_pred CCCCcccCCCCCCCCccccCCC
Q 045720 571 LEGKPILDCTRLPADLYAVGAG 592 (745)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~G~G 592 (745)
. ..+++++||||
T Consensus 444 ~----------~~~pn~~~GyG 455 (455)
T cd07478 444 G----------DEYPNPEWGYG 455 (455)
T ss_pred C----------CCCCCCCCCCC
Confidence 2 35678899998
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.7e-49 Score=415.26 Aligned_cols=286 Identities=29% Similarity=0.318 Sum_probs=192.2
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFV 225 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 225 (745)
|+||+|||||||||++||||.++.. ..|...++ +...+..+.++..+....+.|++||||||||||||+..
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d-----~~~~~~~g~d~~~~~~~~~~D~~gHGThvAGiiag~~~ 71 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFD-----YKAYLLPGMDKWGGFYVIMYDFFSHGTSCASVAAGRGK 71 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccC-----cCCCccCCcCCCCCccCCCCCccccchhHHHHHhccCc
Confidence 8999999999999999999975421 11111111 11123333333332111467899999999999999854
Q ss_pred CCCccccc-CCCceeeecCCceEEEEEeeCCCCCCChHHHHH-------HHHHH--HhCCCcEEEeccCCCCCCCC----
Q 045720 226 HGANIFGQ-ANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIA-------GIDAA--IEDGVDVLSLSFGLGLSQFY---- 291 (745)
Q Consensus 226 ~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIN~SlG~~~~~~~---- 291 (745)
...+..++ ....+.||||+|+|+.+|++...+......+.. +++|+ .+++++|||||||.......
T Consensus 72 ~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~ 151 (311)
T cd07497 72 MEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151 (311)
T ss_pred ccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence 32221111 122458999999999999997222232222332 34444 36799999999998542211
Q ss_pred -CchHHHHHHH-HHhCCcEEEEecCCCCCCC--CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 292 -DNGIAKATFE-AIRRGIFVSIAAGNSGPNH--YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 292 -~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
.+........ +.++|+++|+||||+|+.. ...++..+++|+|||++.....+.
T Consensus 152 g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------- 208 (311)
T cd07497 152 GLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF----------------------- 208 (311)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch-----------------------
Confidence 1223333322 2389999999999999764 345678899999999742211000
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
+.+.+
T Consensus 209 --~~~~~------------------------------------------------------------------------- 213 (311)
T cd07497 209 --YLFGY------------------------------------------------------------------------- 213 (311)
T ss_pred --hhhcc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC-CCCCcccce
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD-PLANRVYTF 526 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~-~~~~~~~~y 526 (745)
.....+.++.||||||+. ++++||||+|||++|+++.+.... ........|
T Consensus 214 --------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y 265 (311)
T cd07497 214 --------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAF 265 (311)
T ss_pred --------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccCCCcce
Confidence 002235789999999998 689999999999999998765421 011122479
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCC------CCCHHHHHHHhhccc
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHP------NWSHAAIKSAMMTTA 566 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~vk~~L~~TA 566 (745)
..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 266 ~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 266 DLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 9999999999999999999999886 589999999999997
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.1e-48 Score=405.62 Aligned_cols=242 Identities=30% Similarity=0.403 Sum_probs=199.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHh
Q 045720 140 WKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAST 219 (745)
Q Consensus 140 ~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGi 219 (745)
|+++++|+||+|||||||||.+||+|.+. +...+|.... ...|+.+||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~~--~~~d~~gHGT~VAGi 54 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNEK--TLDDGLGHGTFVAGV 54 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCCC--CCCCCCCcHHHHHHH
Confidence 89999999999999999999999999742 0112222221 456788999999999
Q ss_pred hcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHH
Q 045720 220 AAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKA 298 (745)
Q Consensus 220 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a 298 (745)
|+|+.. .+.||||+|+|+.+|++. +.+ +..+.++++++||++++++|||||||... ....++.++
T Consensus 55 Ia~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~ 120 (255)
T cd07479 55 IASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDK 120 (255)
T ss_pred HHccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHH
Confidence 998742 137999999999999998 444 66778999999999999999999999753 234566677
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 299 TFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 299 ~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+.++.++|++||+||||+|+... ..++..+++|+||+..
T Consensus 121 ~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 161 (255)
T cd07479 121 VWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------------------------- 161 (255)
T ss_pred HHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------------------------
Confidence 77888999999999999997543 3567788999999841
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCC----CCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCC
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRI----SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGT 532 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
..+.++.|||+|++.. ..+++||||+|||.+|+++... +.|..++||
T Consensus 162 --------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~~sGT 212 (255)
T cd07479 162 --------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRALSGT 212 (255)
T ss_pred --------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEEeccH
Confidence 1236789999996521 2578899999999999988765 378899999
Q ss_pred cchhHHHHHHHHHHHhhCC----CCCHHHHHHHhhcccccc
Q 045720 533 SMACPHLSGVAALLKSAHP----NWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p----~ls~~~vk~~L~~TA~~~ 569 (745)
|||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 213 S~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999999999999999998 789999999999999976
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.5e-48 Score=421.93 Aligned_cols=309 Identities=29% Similarity=0.366 Sum_probs=237.6
Q ss_pred cccCCC-CCCCeEEEEEcCCCCCCCCCCCCCCCCCCCC-----cccccccccCc-ccCccccceeeccCCCCCC--CCCC
Q 045720 139 FWKDSN-FGKGVIIGVLDTGITPGHPSFNDEGMPPPPA-----KWRGKCELVGA-TCNNKLIGVRNFFCGKDGS--AIDY 209 (745)
Q Consensus 139 ~~~~g~-~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~-----~~~~~~~~~~~-~~~~kv~g~~~~~~~~~~~--~~d~ 209 (745)
+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+.. +++.+++.+++|.+..+.. ..+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDDG 81 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCCC
Confidence 788887 9999999999999999999999764443211 22222222222 6778899999998876531 3478
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCC--CCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNP--NVYCPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
.+|||||||||+|...+.. ....+.||||+|+|+.+|+++. ........++++++++++.|++|||||||...
T Consensus 82 ~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 156 (346)
T cd07475 82 SSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156 (346)
T ss_pred CCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 9999999999999864321 1223589999999999999972 33467788999999999999999999999875
Q ss_pred CC-CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------ccCCCCceEEecccccccceEEEEEcCC
Q 045720 288 SQ-FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT----------------LVNDAPWMLTVGASTIDRGITISVRLGN 350 (745)
Q Consensus 288 ~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~----------------~~~~~p~vitVga~~~~~~~~~~~~~~~ 350 (745)
.. .....+..++.++.++|++||+||||+|..... .+...+++|+||+....
T Consensus 157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~----------- 225 (346)
T cd07475 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK----------- 225 (346)
T ss_pred CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-----------
Confidence 32 455677788889999999999999999865432 12345566666653200
Q ss_pred CceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCc
Q 045720 351 QETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGD 430 (745)
Q Consensus 351 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~ 430 (745)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe
Q 045720 431 STLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA 510 (745)
Q Consensus 431 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s 510 (745)
......+.++.||+|||+. ++++||||+|||.+|++
T Consensus 226 ------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s 261 (346)
T cd07475 226 ------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYS 261 (346)
T ss_pred ------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEE
Confidence 0012334678999999998 67999999999999999
Q ss_pred eccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhh----CCCCCHHH----HHHHhhcccccccCCCCcccCCCCC
Q 045720 511 AWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSA----HPNWSHAA----IKSAMMTTADTVNLEGKPILDCTRL 582 (745)
Q Consensus 511 a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----vk~~L~~TA~~~~~~~~~~~~~~~~ 582 (745)
+... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||++.... ...+.
T Consensus 262 ~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-----~~~~~ 327 (346)
T cd07475 262 TVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-----EDTKT 327 (346)
T ss_pred ecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----CCCCc
Confidence 9876 37899999999999999999999997 78999876 788999999853211 11245
Q ss_pred CCCccccCCCccCcCCCCC
Q 045720 583 PADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 583 ~~~~~~~G~G~id~~~Al~ 601 (745)
.+.+..+|+|+||+++||+
T Consensus 328 ~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 328 YYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccCcchhcHHHhhC
Confidence 6778899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-47 Score=405.50 Aligned_cols=286 Identities=31% Similarity=0.398 Sum_probs=227.7
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC---------CCCCC
Q 045720 137 SGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK---------DGSAI 207 (745)
Q Consensus 137 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~---------~~~~~ 207 (745)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|..+. +..+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCCC
Confidence 56899999999999999999999999999864221 11222223332111 11456
Q ss_pred CCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 208 DYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
|..+|||||||||+|...+ ..+.||||+|+|+.+|+++.......+.+++++++|++++++|||||||...
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 7799999999999998533 1248999999999999998333467778999999999999999999999864
Q ss_pred CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCC
Q 045720 288 SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTD 364 (745)
Q Consensus 288 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 364 (745)
. +....+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777888899999999999999987643 3356778999998731
Q ss_pred CCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEe
Q 045720 365 IPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRV 444 (745)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 444 (745)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccc
Q 045720 445 SHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVY 524 (745)
Q Consensus 445 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 524 (745)
+.||+|||+. +...||||+|||++++++++... +
T Consensus 189 -------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-------~ 222 (312)
T cd07489 189 -------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-------G 222 (312)
T ss_pred -------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-------C
Confidence 4689999998 56899999999999999988753 2
Q ss_pred ceeeecCCcchhHHHHHHHHHHHhhC-CCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCCCC
Q 045720 525 TFDIVSGTSMACPHLSGVAALLKSAH-PNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKANDPG 603 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 603 (745)
.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..... ..++++..+|||+||+++|++..
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHHHHhcCC
Confidence 69999999999999999999999999 9999999999999999987543221111 11467789999999999999954
Q ss_pred c
Q 045720 604 L 604 (745)
Q Consensus 604 l 604 (745)
-
T Consensus 301 ~ 301 (312)
T cd07489 301 T 301 (312)
T ss_pred c
Confidence 3
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.5e-46 Score=391.40 Aligned_cols=247 Identities=26% Similarity=0.317 Sum_probs=203.9
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
+|..+++|+||+|||||+|||++||+|.+..+.... .+....+ ...|..+|||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~----------------------~~~~~~~-~~~~~~gHGT~VAg 58 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF----------------------TYAAAAC-QDGGASAHGTHVAS 58 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc----------------------CccccCC-CCCCCCCcHHHHHH
Confidence 799999999999999999999999999875322111 1111111 45678899999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCCCchHH
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLS-QFYDNGIA 296 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~~~~~~ 296 (745)
||+|+... .+.||||+|+|+.+|++..... .+..++++||+||+++|++|||||||.... ......+.
T Consensus 59 ii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~ 128 (267)
T cd07476 59 LIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILA 128 (267)
T ss_pred HHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHH
Confidence 99987421 1479999999999999873333 446789999999999999999999997542 33456678
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 297 KATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 297 ~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+++.++.++|+++|+||||+|.....+++..+++|+||+..
T Consensus 129 ~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 169 (267)
T cd07476 129 NAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD--------------------------------------- 169 (267)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec---------------------------------------
Confidence 88889999999999999999988778888899999999842
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchh
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 536 (745)
..+.++.||+||+.. .||||+|||.+|+++.+.+ .|..++||||||
T Consensus 170 --------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~---------~~~~~sGTS~Aa 215 (267)
T cd07476 170 --------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALGG---------EVVRRSGTSFAA 215 (267)
T ss_pred --------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---------CeEEeccHHHHH
Confidence 112457899999764 4889999999999998773 789999999999
Q ss_pred HHHHHHHHHHHhhCCC----CCHHHHHHHhhcccccccC
Q 045720 537 PHLSGVAALLKSAHPN----WSHAAIKSAMMTTADTVNL 571 (745)
Q Consensus 537 P~VAG~aALl~q~~p~----ls~~~vk~~L~~TA~~~~~ 571 (745)
|||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 216 P~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 216 AIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9999999999999887 8999999999999998854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-45 Score=393.70 Aligned_cols=278 Identities=42% Similarity=0.611 Sum_probs=216.6
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC--------------CCCCCCC
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG--------------SAIDYTG 211 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~--------------~~~d~~g 211 (745)
|+||+|||||+|||++||+|.+... .+.++...++|...... ...|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985321 22334444555433210 1345889
Q ss_pred ChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC
Q 045720 212 HGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY 291 (745)
Q Consensus 212 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (745)
|||||||+|+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999988533 2234899999999999999733447888999999999999999999999976432 4
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCCcc--cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCc
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL--VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKR 369 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 369 (745)
.+.+..++.++.++|+++|+||||+|...... ++..+++|+||++....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 56778888899999999999999998765443 57789999999853100
Q ss_pred eeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhH
Q 045720 370 LPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVS 449 (745)
Q Consensus 370 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 449 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCC-CCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 450 ESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGR-GPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
.........|+++ |+.. ...+||||+|||.+|.+++.... ..|..
T Consensus 186 -------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-------~~~~~ 231 (295)
T cd07474 186 -------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-------TGYAR 231 (295)
T ss_pred -------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------CceEE
Confidence 0011233445555 4544 57899999999999999987742 37899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCC
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 599 (745)
++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..||+|+||+.+|
T Consensus 232 ~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 232 MSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred eccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 9999999999999999999999999999999999999998864432 223567899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9e-46 Score=380.38 Aligned_cols=235 Identities=28% Similarity=0.339 Sum_probs=193.9
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
|+|||||||||++||+|.++.+ ..+++... ...|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-----------------------~~~~~~~~---~~~~~~~HGT~vAgiia~~~~~-- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-----------------------ARLFFAGP---GAPAPSAHGTAVASLLAGAGAQ-- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-----------------------ccccCCCC---CCCCCCCCHHHHHHHHhCCCCC--
Confidence 7899999999999999976421 11222211 3567899999999999988422
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCC---CCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhC
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNV---YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~ 305 (745)
. .||||+|+|+.+|++.... .++..++++||+||++.|++|||||||+.. ...+..++.++.++
T Consensus 53 --------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~~ 119 (239)
T cd05561 53 --------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAAR 119 (239)
T ss_pred --------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHHC
Confidence 1 5999999999999998321 267788999999999999999999999653 35677788899999
Q ss_pred CcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcC
Q 045720 306 GIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTT 384 (745)
Q Consensus 306 Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (745)
|++||+||||+|... ..+++..+++|+||+..
T Consensus 120 gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~----------------------------------------------- 152 (239)
T cd05561 120 GMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD----------------------------------------------- 152 (239)
T ss_pred CCEEEEecCCCCCCCCccCcccCCCceEEEeec-----------------------------------------------
Confidence 999999999999764 45778889999999842
Q ss_pred CCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeE
Q 045720 385 FCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTA 464 (745)
Q Consensus 385 ~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHH
Q 045720 465 ALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAA 544 (745)
Q Consensus 465 ~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 544 (745)
..+.++.||++|+.. ||.|||.+|+++.+. +.|..++|||||||||||++|
T Consensus 153 ------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~vaG~aA 203 (239)
T cd05561 153 ------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFVTAALA 203 (239)
T ss_pred ------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHHHHHHH
Confidence 123567899999876 999999999998766 379999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCC
Q 045720 545 LLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAG 592 (745)
Q Consensus 545 Ll~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 592 (745)
|++|++| ++++|||++|++||+++.. +..+..||||
T Consensus 204 ll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 204 LLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 9999999 9999999999999998743 3466789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=8.6e-45 Score=384.14 Aligned_cols=250 Identities=29% Similarity=0.403 Sum_probs=187.9
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccc--------cCcccCccccceeeccCCC----------------
Q 045720 147 KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCEL--------VGATCNNKLIGVRNFFCGK---------------- 202 (745)
Q Consensus 147 ~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~--------~~~~~~~kv~g~~~~~~~~---------------- 202 (745)
|+|+|||||||||++||+|+++ .|.+..+. +.. +-++ +.+++|....
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng-~~dd-~~g~~f~~~~~~~~~~~~~~~~~~~~ 71 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNG-YIDD-VNGWNFLGQYDPRRIVGDDPYDLTEK 71 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCC-cccc-ccCeeccCCcccccccccCccccccc
Confidence 6899999999999999999874 23222211 100 1111 2344443210
Q ss_pred ----C--CCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCC
Q 045720 203 ----D--GSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGV 276 (745)
Q Consensus 203 ----~--~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~ 276 (745)
+ ..+.+..+|||||||||+|...++ .| +.||||+++|+.+|++. .......++++||+||+++|+
T Consensus 72 ~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~-------~g-~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~ 142 (291)
T cd07483 72 GYGNNDVNGPISDADHGTHVAGIIAAVRDNG-------IG-IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGA 142 (291)
T ss_pred cccccccCCCCCCCCcHHHHHHHHhCcCCCC-------Cc-eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCC
Confidence 0 023457899999999999985332 22 48999999999999987 555677889999999999999
Q ss_pred cEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------CCCCceEEecccccccceEEE
Q 045720 277 DVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYT---LV--------NDAPWMLTVGASTIDRGITIS 345 (745)
Q Consensus 277 dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~ 345 (745)
+|||||||..... ....+..++.++.++|+++|+||||+|.+... ++ ...+++|+||+....
T Consensus 143 ~IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------ 215 (291)
T cd07483 143 KVINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------ 215 (291)
T ss_pred cEEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------
Confidence 9999999975322 23456777788999999999999999865321 11 223567777764211
Q ss_pred EEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeec
Q 045720 346 VRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMND 425 (745)
Q Consensus 346 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~ 425 (745)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCC
Q 045720 426 ELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPG 505 (745)
Q Consensus 426 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG 505 (745)
.....++.||++|+. +|||+|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 011246889999974 46999999
Q ss_pred ccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 506 LNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 506 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 239 ~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999876 37999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-45 Score=379.64 Aligned_cols=242 Identities=31% Similarity=0.437 Sum_probs=198.2
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCC-CCCCCChhHHHHhhcccCcC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSA-IDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~-~d~~gHGThVAGiiag~~~~ 226 (745)
||+|||||||||++||+|..... ..+.++.+.++|.+... .. .|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------~~~~~i~~~~~~~~~~~-~~~~~~~~HGT~vagiia~~~~- 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------FKNLRILGEYDFVDNSN-NTNYTDDDHGTAVLSTMAGYTP- 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------ccCCceeeeecCccCCC-CCCCCCCCchhhhheeeeeCCC-
Confidence 79999999999999999952110 02345777788877654 33 6789999999999998742
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC------------
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVY---CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY------------ 291 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~------------ 291 (745)
+.+.||||+|+|+.+|+.. ... .....++.+++|+.+.+++|||||||.......
T Consensus 63 ---------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~ 132 (261)
T cd07493 63 ---------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGK 132 (261)
T ss_pred ---------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccccc
Confidence 2258999999999999876 322 345678999999999999999999998642211
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCC---CCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPN---HYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
...+.+++.++.++|+++|+||||+|.. ...+++..+++|+||+..
T Consensus 133 ~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------- 181 (261)
T cd07493 133 TSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------- 181 (261)
T ss_pred chHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-------------------------------
Confidence 2357778888999999999999999987 355678889999999841
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||+. ++++||||+|||.++++.... +.|..
T Consensus 182 ----------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~~~~~ 222 (261)
T cd07493 182 ----------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------GNITY 222 (261)
T ss_pred ----------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------CcEEe
Confidence 112567899999987 789999999999999986544 37899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 223 ~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 223 ANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999985
No 14
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3.4e-44 Score=386.84 Aligned_cols=221 Identities=26% Similarity=0.342 Sum_probs=166.7
Q ss_pred CCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccC
Q 045720 207 IDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFG 284 (745)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (745)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+ .....+++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985322 23489999999999999873223 23457999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHH-HHhCCcEEEEecCCCCCCCCcc--cC-CCCceEEecccccccceEEEEEcCCCceeeeeecc
Q 045720 285 LGLSQFYDNGIAKATFE-AIRRGIFVSIAAGNSGPNHYTL--VN-DAPWMLTVGASTIDRGITISVRLGNQETYDGEALW 360 (745)
Q Consensus 285 ~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 360 (745)
..........+.+++.+ +.++|+++|+||||+|+..++. ++ ..+++|+|||......+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~------------- 320 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYS------------- 320 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccc-------------
Confidence 86432222334444444 3479999999999999876654 33 5789999999532211000000
Q ss_pred cCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccc
Q 045720 361 QWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLP 440 (745)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 440 (745)
T Consensus 321 -------------------------------------------------------------------------------- 320 (412)
T cd04857 321 -------------------------------------------------------------------------------- 320 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCC
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLA 520 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~ 520 (745)
......+.++.||||||+. +|.+||||+|||+.|.|.-....
T Consensus 321 --------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~---- 362 (412)
T cd04857 321 --------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTL---- 362 (412)
T ss_pred --------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCC----
Confidence 0001234688999999998 79999999999999988532221
Q ss_pred CcccceeeecCCcchhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccc
Q 045720 521 NRVYTFDIVSGTSMACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 521 ~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~ 569 (745)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ---~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 ---QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 3789999999999999999999975 578999999999999999864
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.1e-44 Score=376.89 Aligned_cols=245 Identities=33% Similarity=0.428 Sum_probs=195.1
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCC--CCCCCCCCCChhHHHHhhccc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK--DGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~--~~~~~d~~gHGThVAGiiag~ 223 (745)
|+||+|||||+|||++||+|.++ |+..... .+...+++.+.. ...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-------~~~~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-------SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-------CcccccccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 1110000 000111111110 115668899999999999987
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh------------CCCcEEEeccCCCCCCCC
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE------------DGVDVLSLSFGLGLSQFY 291 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~------------~g~dVIN~SlG~~~~~~~ 291 (745)
.... + ..||||+|+|+.+|+++ ...+...+++++++++++ .+++|||||||.... .
T Consensus 66 ~~~~--------~-~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~ 133 (264)
T cd07481 66 DGDG--------Q-QIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--D 133 (264)
T ss_pred CCCC--------C-ceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--C
Confidence 4221 1 27999999999999998 666888899999999975 689999999998643 3
Q ss_pred CchHHHHHHHHHhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCC
Q 045720 292 DNGIAKATFEAIRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSK 368 (745)
Q Consensus 292 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 368 (745)
...+..++..+.++|++||+||||++.... .+++..+++|+||+..
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------------------- 182 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------------------- 182 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC-------------------------------
Confidence 455666777888999999999999986643 2567889999999842
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhh
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAV 448 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 448 (745)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceee
Q 045720 449 SESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDI 528 (745)
Q Consensus 449 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~ 528 (745)
..+.++.||++||.. .++.||||+|||.+|.++.+.+ .|..
T Consensus 183 ----------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~---------~~~~ 223 (264)
T cd07481 183 ----------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG---------GYGS 223 (264)
T ss_pred ----------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC---------ceEe
Confidence 123568899999998 5799999999999999998873 7899
Q ss_pred ecCCcchhHHHHHHHHHHHhhCCC--CCHHHHHHHhhcccc
Q 045720 529 VSGTSMACPHLSGVAALLKSAHPN--WSHAAIKSAMMTTAD 567 (745)
Q Consensus 529 ~sGTSmAaP~VAG~aALl~q~~p~--ls~~~vk~~L~~TA~ 567 (745)
++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 224 ~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 224 SSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999 999999999999985
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-45 Score=379.99 Aligned_cols=332 Identities=28% Similarity=0.389 Sum_probs=256.4
Q ss_pred CCceEEEEeCCCC----CCChHHHHHhhchhccccCCC-------Cccc-CCC-ccEEEEec---ceeeEEEEEeCHHHH
Q 045720 39 GLQTYIIYVQKPE----QGDLDSWYRSFLPEATISNSS-------DHDR-NQS-SRMLYFYK---NVISGFAARLTAEEV 102 (745)
Q Consensus 39 ~~~~yIV~~~~~~----~~~~~~~~~~~l~~~~~~~~~-------~~~~-~~~-~~v~~~~~---~~~~g~s~~~~~~~i 102 (745)
.+.+|||.|++.. .+.+..+++++.........+ +... ... ..+.+.|. .+|+++.-.++.+.+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 4689999999777 455666666665544321100 0000 000 11333443 378888899999999
Q ss_pred HHhhcCCCeEEEEEcceecccc-----cCCCCccccCCCCC-------cc----cCCCCCCCeEEEEEcCCCCCCCCCCC
Q 045720 103 KAMETKKGFISARVENTLHLHT-----THTPNFLGLHRSSG-------FW----KDSNFGKGVIIGVLDTGITPGHPSFN 166 (745)
Q Consensus 103 ~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~g~~G~Gv~VaVIDtGid~~Hp~f~ 166 (745)
..++++|-++.++++..++... .+....|++.++.. -| .+-..|+||...|+||||+.+||||.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998877654 34455577654211 11 12337999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCce
Q 045720 167 DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAH 246 (745)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~ 246 (745)
++ +.|-... ...+ ...|++||||||||+|+++. .|||.+++
T Consensus 239 gR------a~wGa~i----------------~~~~---~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~ 279 (501)
T KOG1153|consen 239 GR------AIWGATI----------------PPKD---GDEDCNGHGTHVAGLIGSKT--------------FGVAKNSN 279 (501)
T ss_pred cc------eeccccc----------------CCCC---cccccCCCcceeeeeeeccc--------------cccccccc
Confidence 86 4452211 1111 46789999999999999985 79999999
Q ss_pred EEEEEeeCCCCCCChHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEEEEecCCCC
Q 045720 247 LAVYKVCNPNVYCPESAVIAGIDAAIED---------GVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFVSIAAGNSG 317 (745)
Q Consensus 247 l~~~kv~~~~~g~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g 317 (745)
|+++||+++++.+..+++++++|++++. +..|.|||+|+..+ -++..|+.+|.+.|+.+++||||+.
T Consensus 280 lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~AAGNe~ 355 (501)
T KOG1153|consen 280 LVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVAAGNEH 355 (501)
T ss_pred eEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEcCCCcc
Confidence 9999999955559999999999999986 47899999999744 4566777799999999999999999
Q ss_pred CCCCccc-CCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcc
Q 045720 318 PNHYTLV-NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDV 396 (745)
Q Consensus 318 ~~~~~~~-~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 396 (745)
.+.|.++ +.+..+|||||++.
T Consensus 356 eDAC~~SPass~~aITVGAst~---------------------------------------------------------- 377 (501)
T KOG1153|consen 356 EDACNSSPASSKKAITVGASTK---------------------------------------------------------- 377 (501)
T ss_pred hhhhccCcccccccEEeccccc----------------------------------------------------------
Confidence 9987664 88999999999632
Q ss_pred cceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCC
Q 045720 397 KGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGG 476 (745)
Q Consensus 397 ~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 476 (745)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCC----
Q 045720 477 SAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPN---- 552 (745)
Q Consensus 477 ~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---- 552 (745)
.+.+|.||+||+|. ||.|||.+|+|+|.++.. ....+||||||+|||||++|..++.+|.
T Consensus 378 -~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~ 441 (501)
T KOG1153|consen 378 -NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSS 441 (501)
T ss_pred -ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-------chheeecccccCcchhhhHHHhhhcCCCChHH
Confidence 23789999999999 999999999999998653 6789999999999999999999999883
Q ss_pred -----CCHHHHHHHhhcccc
Q 045720 553 -----WSHAAIKSAMMTTAD 567 (745)
Q Consensus 553 -----ls~~~vk~~L~~TA~ 567 (745)
.|+.++|..++.=..
T Consensus 442 f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 442 FANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhccCChHHhhhhhhcccc
Confidence 378888887776544
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-44 Score=372.56 Aligned_cols=255 Identities=36% Similarity=0.522 Sum_probs=203.9
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccC--CCCCCCCCCCCChhHHHHhhccc
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFC--GKDGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~--~~~~~~~d~~gHGThVAGiiag~ 223 (745)
|+||+|+|||+|||++||+|.+.... .+.+.. ..+....|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 111111 00115667889999999999998
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC----CCcEEEeccCCCCC-CCCCchHHHH
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED----GVDVLSLSFGLGLS-QFYDNGIAKA 298 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~-~~~~~~~~~a 298 (745)
..+. .+.+.||||+|+|+.+|+++.......++++++|+|+++. +++|||||||.... ....+.+..+
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~ 130 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQA 130 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHH
Confidence 5331 2235899999999999999833347788999999999998 99999999998753 4466788888
Q ss_pred HHHHHhCCcEEEEecCCCCCCCC--cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecC
Q 045720 299 TFEAIRRGIFVSIAAGNSGPNHY--TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPD 376 (745)
Q Consensus 299 ~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 376 (745)
+.++.++|++||+||||++.... ..++..+++|+||+...+..
T Consensus 131 ~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------------------- 175 (264)
T cd07487 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------------------- 175 (264)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------------------
Confidence 89999999999999999998775 55678899999998532210
Q ss_pred CCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHH
Q 045720 377 ARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYI 456 (745)
Q Consensus 377 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 456 (745)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchh
Q 045720 457 NSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMAC 536 (745)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 536 (745)
....++.||++||+. +++.||||+|||++|++..+............|..++||||||
T Consensus 176 --------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aa 233 (264)
T cd07487 176 --------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMAT 233 (264)
T ss_pred --------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEeccccchHH
Confidence 002468899999998 7899999999999999975542211122235789999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 537 PHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 537 P~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|+|||++|||+|++|.+++.+||++|++||+
T Consensus 234 p~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=6e-44 Score=375.36 Aligned_cols=261 Identities=29% Similarity=0.395 Sum_probs=202.5
Q ss_pred CcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeecc---CCCCCCCCCCCCChh
Q 045720 138 GFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFF---CGKDGSAIDYTGHGT 214 (745)
Q Consensus 138 ~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~---~~~~~~~~d~~gHGT 214 (745)
++|..+++|+||+|+|||||||++||+|.++....- + ......+.+. ...+....|..+|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---Y------------DPAVNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---c------------ccccCCcccccccCCcCCCCCCCCCCHH
Confidence 379999999999999999999999999997511100 0 0000111111 000114567889999
Q ss_pred HHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCch
Q 045720 215 HTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNG 294 (745)
Q Consensus 215 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 294 (745)
||||||+|...+.....|.. .+.|+||+++|+.+|++..........++++|+|+++.|++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999999754332221111 2357999999999999983344778889999999999999999999998754445667
Q ss_pred HHHHHHHHHhC-------CcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 295 IAKATFEAIRR-------GIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 295 ~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
+..++..+.++ |++||+||||++.....+++..+++|+||+.+
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~------------------------------ 193 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD------------------------------ 193 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc------------------------------
Confidence 77788888888 99999999999988877788899999999852
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCc-cEEeeccCCCCCCCCcccce
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGL-NIIAAWKTTVDPLANRVYTF 526 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~y 526 (745)
..+.++.||++|+.. ||+|||. .|+++.+.... .....|
T Consensus 194 -----------------------------~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---~~~~~~ 233 (273)
T cd07485 194 -----------------------------TNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---DGGGNY 233 (273)
T ss_pred -----------------------------CCCCcCccccCCCce--------EEEeCCCCccccccccccC---CCCCCe
Confidence 113567899999876 9999999 89888765311 112478
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCC-CCHHHHHHHhhcc
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPN-WSHAAIKSAMMTT 565 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~vk~~L~~T 565 (745)
..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 234 ~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 234 EYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=3.7e-43 Score=365.97 Aligned_cols=233 Identities=36% Similarity=0.512 Sum_probs=197.4
Q ss_pred cccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHH
Q 045720 139 FWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTAS 218 (745)
Q Consensus 139 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAG 218 (745)
+|..+++|+||+|||||+||+++||+|.++ +...+++.... ...|..+|||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~~--~~~d~~~HGT~vAg 71 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGGD--PDSDCNGHGTHVAG 71 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCCC--CCCCCCccHHHHHH
Confidence 677889999999999999999999999764 22234444332 35688999999999
Q ss_pred hhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC-----CCcEEEeccCCCCCCCCCc
Q 045720 219 TAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED-----GVDVLSLSFGLGLSQFYDN 293 (745)
Q Consensus 219 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~-----g~dVIN~SlG~~~~~~~~~ 293 (745)
||+++. .||||+|+|+.+|+++.......++++++++|+++. +++|||||||... ..
T Consensus 72 iia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~~ 133 (255)
T cd04077 72 TVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----ST 133 (255)
T ss_pred HHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----CH
Confidence 999873 699999999999999833347788999999999987 4899999999864 45
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeE
Q 045720 294 GIAKATFEAIRRGIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPL 372 (745)
Q Consensus 294 ~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~ 372 (745)
.+..++.++.++|+++|+||||+|... ...++..+++|+||+...
T Consensus 134 ~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~---------------------------------- 179 (255)
T cd04077 134 ALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS---------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC----------------------------------
Confidence 677778889999999999999999876 456788899999998521
Q ss_pred EecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHH
Q 045720 373 VYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESI 452 (745)
Q Consensus 373 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 452 (745)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCC
Q 045720 453 KAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGT 532 (745)
Q Consensus 453 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 532 (745)
.+.++.||++||.. ||+|||.+|.++..... ..|..++||
T Consensus 180 -------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~~~~GT 219 (255)
T cd04077 180 -------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATATLSGT 219 (255)
T ss_pred -------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEEeeCcH
Confidence 12467899999987 99999999999887432 489999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccc
Q 045720 533 SMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADT 568 (745)
Q Consensus 533 SmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~ 568 (745)
|||||+|||++|||+|++|+++++|||++|++||++
T Consensus 220 S~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 220 SMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=6.5e-43 Score=365.25 Aligned_cols=242 Identities=33% Similarity=0.479 Sum_probs=205.3
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
.+.+|..+ +|+||+|+|||+|||++||+|... ++...+++.+... .+.|..+||||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~~-~~~d~~~HGT~ 73 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDNDS-DAMDDNGHGTH 73 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCCC-CCCCCCCcHHH
Confidence 46689998 999999999999999999998432 3344455555433 46688999999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchH
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGI 295 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~ 295 (745)
|||||++...+.. .+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||... ....+
T Consensus 74 vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~~ 142 (260)
T cd07484 74 VAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTAL 142 (260)
T ss_pred HHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHHH
Confidence 9999998753321 248999999999999998334477889999999999999999999999863 45667
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 296 AKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 296 ~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 143 ~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------- 185 (260)
T cd07484 143 QEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------------------------- 185 (260)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------------------------
Confidence 7788888999999999999999988889999999999998521
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
.+.++.||++|+.. |++|||.+|.++.+. +.|..++|||||
T Consensus 186 ----------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~GTS~A 226 (260)
T cd07484 186 ----------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMSGTSMA 226 (260)
T ss_pred ----------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEeeeHHHH
Confidence 12457899999876 999999999998776 378999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccc
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTV 569 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~ 569 (745)
||+|||++||++|++| +++++||++|++||+++
T Consensus 227 ap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 227 TPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 9999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-43 Score=371.98 Aligned_cols=260 Identities=27% Similarity=0.246 Sum_probs=187.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
.+|||||||||.+||+|.+.- .....+....+ ...|..+|||||||||++.....
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~~-~~~d~~gHGT~vAgiia~~~~~~- 55 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEPG-WTADDLGHGTAVAGLALYGDLTL- 55 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-----------------------ccccccccCCC-CcCCCCCChHHHHHHHHcCcccC-
Confidence 379999999999999998641 11122222111 25689999999999999764321
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCC----CCChHHHHHHHHHHHhCC---CcEEEeccCCCCCCCC--CchHHHHH
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNV----YCPESAVIAGIDAAIEDG---VDVLSLSFGLGLSQFY--DNGIAKAT 299 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~----g~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~~~--~~~~~~a~ 299 (745)
....|+||+++|+.+|++...+ .....+++++|+|+++.+ ++|||||||....... ...+..++
T Consensus 56 -------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~i 128 (291)
T cd04847 56 -------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAAL 128 (291)
T ss_pred -------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHH
Confidence 1237999999999999998332 256778999999999864 4999999998753221 12455455
Q ss_pred HH-HHhCCcEEEEecCCCCCCCCc------------ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCC
Q 045720 300 FE-AIRRGIFVSIAAGNSGPNHYT------------LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIP 366 (745)
Q Consensus 300 ~~-a~~~Gv~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 366 (745)
.+ +.++|++||+||||++..... .++..+++|+|||.......... +.+
T Consensus 129 d~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~~------ 190 (291)
T cd04847 129 DQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------ARY------ 190 (291)
T ss_pred HHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------ccc------
Confidence 43 568999999999999987643 24667899999996443311000 000
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEech
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSH 446 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~ 446 (745)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC---------
Q 045720 447 AVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD--------- 517 (745)
Q Consensus 447 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~--------- 517 (745)
+.......+.||+|||.. ++.+||||+|||++|.+..+....
T Consensus 191 ---------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~ 241 (291)
T cd04847 191 ---------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTT 241 (291)
T ss_pred ---------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeec
Confidence 000001233499999998 789999999999999886442110
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 242 ~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 242 LSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 01122357999999999999999999999999999999999999999985
No 22
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-42 Score=366.83 Aligned_cols=249 Identities=25% Similarity=0.337 Sum_probs=184.8
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhH
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTH 215 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGTh 215 (745)
+..+|+++++|+||+|||||||||..|| |..+++. + + ..+..+......|+.|||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~----~~~~~~~~~~~~D~~gHGT~ 66 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------R----VVLAPGATDPACDENGHGTG 66 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------e----eecCCCCCCCCCCCCCcchh
Confidence 4569999999999999999999999898 7643221 0 0 01111111145688899999
Q ss_pred HHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC------
Q 045720 216 TASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ------ 289 (745)
Q Consensus 216 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~------ 289 (745)
||+++ .||||+|+|+.+|+++ . ..++++++|+||++++++|||||||.....
T Consensus 67 vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 67 ESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred eeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 99875 5999999999999997 3 567799999999999999999999985321
Q ss_pred ----CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCC
Q 045720 290 ----FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDI 365 (745)
Q Consensus 290 ----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 365 (745)
.....+..++.+|.++|++||+||||++. .+|+..|++|+||++..+..-
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g----------------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG----------------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC-----------------------
Confidence 12345778888899999999999999874 578999999999996432200
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEec
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccC--CCCCCCCCCCcccee----------------eeCCcc
Q 045720 446 HAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSG--RGPSRISPGILKPDI----------------IGPGLN 507 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs--~Gp~~~~~g~~KPDi----------------~APG~~ 507 (745)
.....+++ +... ..+++.|||+ +|||..
T Consensus 179 ---------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~ 224 (298)
T cd07494 179 ---------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQ 224 (298)
T ss_pred ---------------------------------cccccccccCcccc-cCCCCccCccccccCcCCcccccccccCCCcc
Confidence 00001111 1111 1246677777 479999
Q ss_pred EEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhccccccc
Q 045720 508 IIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVN 570 (745)
Q Consensus 508 I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~ 570 (745)
|.++..... ........|..++|||||||||||++|||+|++|.|+++|||.+|++||+++.
T Consensus 225 i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 225 LDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred eeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 976543210 01112257999999999999999999999999999999999999999999774
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-42 Score=365.99 Aligned_cols=257 Identities=27% Similarity=0.345 Sum_probs=189.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCC------cccccccccCc-----ccCccccceeeccCCCCCCCCCCCCChhHH
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPA------KWRGKCELVGA-----TCNNKLIGVRNFFCGKDGSAIDYTGHGTHT 216 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~------~~~~~~~~~~~-----~~~~kv~g~~~~~~~~~~~~~d~~gHGThV 216 (745)
||+|||||||||++||+|.++....... ..++....... +.+.+......+. .....+..+|||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~HGT~v 77 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFC---GSGVSPSSWHGTHV 77 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccc---cCCCCCCCCCHHHH
Confidence 7999999999999999998753211000 00000000000 0000000000000 01345678999999
Q ss_pred HHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH----------hCCCcEEEeccCCC
Q 045720 217 ASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI----------EDGVDVLSLSFGLG 286 (745)
Q Consensus 217 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~----------~~g~dVIN~SlG~~ 286 (745)
||||+|...++. .+.||||+|+|+.+|+++ ..+...+++++|++|++ .++++|||||||..
T Consensus 78 Agiiaa~~~~~~--------~~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~ 148 (285)
T cd07496 78 AGTIAAVTNNGV--------GVAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGD 148 (285)
T ss_pred HHHHhCcCCCCC--------CceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCC
Confidence 999999864221 237999999999999998 55568889999999998 45789999999986
Q ss_pred CCCCCCchHHHHHHHHHhCCcEEEEecCCCCCCC-CcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCC
Q 045720 287 LSQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNH-YTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDI 365 (745)
Q Consensus 287 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 365 (745)
... ...+..++.++.++|++||+||||++... ..+++..+++|+||+++
T Consensus 149 ~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~---------------------------- 198 (285)
T cd07496 149 GAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD---------------------------- 198 (285)
T ss_pred CCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC----------------------------
Confidence 432 45677888899999999999999999876 66778889999999852
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEec
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVS 445 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 445 (745)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC------CC
Q 045720 446 HAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD------PL 519 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~------~~ 519 (745)
..+.++.||++||.. ||+|||++|.++...... ..
T Consensus 199 -------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~ 239 (285)
T cd07496 199 -------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTT 239 (285)
T ss_pred -------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccccc
Confidence 123568899999977 999999999988765321 02
Q ss_pred CCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcc
Q 045720 520 ANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 520 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 565 (745)
......|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 240 ~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 240 SPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2223578999999999999999999999999999999999999976
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-42 Score=357.55 Aligned_cols=250 Identities=32% Similarity=0.425 Sum_probs=187.4
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCC---CCCCCCCCCCChhHHHHhhcccC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG---KDGSAIDYTGHGTHTASTAAGNF 224 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~---~~~~~~d~~gHGThVAGiiag~~ 224 (745)
||+|||||+|||++||+|.+.- ....+|..+ ......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998641 111222210 01145678899999999999985
Q ss_pred cCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHh
Q 045720 225 VHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIR 304 (745)
Q Consensus 225 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~ 304 (745)
. .+...||||+++|+.+|++. ..++..++++++|+|+++.+++|||||||..... .+.+..++....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 3 12247999999999999998 5557889999999999999999999999986533 4556655555554
Q ss_pred -CCcEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCc
Q 045720 305 -RGIFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTT 383 (745)
Q Consensus 305 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (745)
+|++||+||||+|.....+++..+++|+||+++.+..... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999887788889999999999643221000 00
Q ss_pred CCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCe
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPT 463 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 463 (745)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHH
Q 045720 464 AALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543 (745)
Q Consensus 464 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
..........+.+|... ....|||++|||.+|+++.... .....|..++|||||||+|||++
T Consensus 169 ------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~-----~~~~~~~~~~GTS~AaP~vaG~a 230 (254)
T cd07490 169 ------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA-----NGDGQYTRLSGTSMAAPHVAGVA 230 (254)
T ss_pred ------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC-----CCCCCeeecccHHHHHHHHHHHH
Confidence 00001122233334332 4568999999999999854221 12257999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHhhcccc
Q 045720 544 ALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 544 ALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
|||+|++|+|++.|||++|++||+
T Consensus 231 Al~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 231 ALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=4.6e-42 Score=365.41 Aligned_cols=277 Identities=27% Similarity=0.301 Sum_probs=202.7
Q ss_pred CCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhc
Q 045720 142 DSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAA 221 (745)
Q Consensus 142 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiia 221 (745)
+|++|+||+|||||+|||++||+|.+.... +....++++.....+.+. ..|..+|||||||||+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~~~~~~~~~~~~~~~~----~~d~~~HGT~vAgiia 65 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTNLFHRKIVRYDSLSDT----KDDVDGHGTHVAGIIA 65 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCccCcccEEEeeccCCC----CCCCCCCcchhheeec
Confidence 589999999999999999999999764210 000133444444444432 3388999999999999
Q ss_pred ccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHH
Q 045720 222 GNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKAT 299 (745)
Q Consensus 222 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~ 299 (745)
|....... ...+.||||+|+|+.+|+++ ..+ ....++..+++++.+.+++|||||||...... ......++
T Consensus 66 ~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~~ 138 (293)
T cd04842 66 GKGNDSSS-----ISLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARAY 138 (293)
T ss_pred cCCcCCCc-----ccccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHHH
Confidence 98644221 01248999999999999998 443 55667889999999999999999999875321 23333444
Q ss_pred HHHH-h-CCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEe
Q 045720 300 FEAI-R-RGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVY 374 (745)
Q Consensus 300 ~~a~-~-~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 374 (745)
.++. + +|+++|+||||++.... ..++..+++|+||+++.......
T Consensus 139 ~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------------------ 188 (293)
T cd04842 139 DQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------------------ 188 (293)
T ss_pred HHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc------------------------------
Confidence 3433 3 89999999999998765 56788999999999644331000
Q ss_pred cCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHH
Q 045720 375 PDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 375 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|..
T Consensus 189 ---------~~~~~------------------------------------------------------------------ 193 (293)
T cd04842 189 ---------EGGLG------------------------------------------------------------------ 193 (293)
T ss_pred ---------ccccc------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcc
Q 045720 455 YINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSM 534 (745)
Q Consensus 455 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 534 (745)
.....+.++.||++||+. ++++||||+|||.+|+++..............|..++||||
T Consensus 194 -------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~ 252 (293)
T cd04842 194 -------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSM 252 (293)
T ss_pred -------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHH
Confidence 012234689999999998 68999999999999999975421111222357899999999
Q ss_pred hhHHHHHHHHHHHhhCC--------CCCHHHHHHHhhcccc
Q 045720 535 ACPHLSGVAALLKSAHP--------NWSHAAIKSAMMTTAD 567 (745)
Q Consensus 535 AaP~VAG~aALl~q~~p--------~ls~~~vk~~L~~TA~ 567 (745)
|||+|||++|||+|++| .+++.++|++|++||+
T Consensus 253 AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 253 ATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999854 6667799999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-42 Score=352.94 Aligned_cols=240 Identities=30% Similarity=0.385 Sum_probs=191.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGA 228 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 228 (745)
|+|||||+|||++||+|.++. +++..+++..... ...|..+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~-~~~~~~~HGT~vAgiiag~~~~~- 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNND-PTSDIDGHGTACAGVAAAVGNNG- 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCCC-CCCCCCCCHHHHHHHHHhccCCC-
Confidence 689999999999999998630 1122223332221 45788999999999999985322
Q ss_pred cccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCCCchHHHHHHHHHh-CC
Q 045720 229 NIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLS-QFYDNGIAKATFEAIR-RG 306 (745)
Q Consensus 229 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-~~~~~~~~~a~~~a~~-~G 306 (745)
..+.||||+|+|+.+|+++....+...++.++++|+++.+++|||||||.... ......+..++.++.+ +|
T Consensus 58 -------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~g 130 (242)
T cd07498 58 -------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKG 130 (242)
T ss_pred -------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCC
Confidence 22489999999999999983334678889999999999999999999998643 2345667777778888 99
Q ss_pred cEEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCC
Q 045720 307 IFVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFC 386 (745)
Q Consensus 307 v~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 386 (745)
+++|+||||+|.....+++..+++|+||+.+.
T Consensus 131 vliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------------------ 162 (242)
T cd07498 131 GVVLFAAGNSGRSVSSGYAANPSVIAVAATDS------------------------------------------------ 162 (242)
T ss_pred eEEEEecCCCCCccCCCCcCCCCeEEEEEeCC------------------------------------------------
Confidence 99999999999887777889999999998521
Q ss_pred CCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEE
Q 045720 387 SPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAAL 466 (745)
Q Consensus 387 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 466 (745)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHH
Q 045720 467 VMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALL 546 (745)
Q Consensus 467 ~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 546 (745)
.+.+++||++||.. |++|||.++.+.............+.|..++|||||||+|||++|||
T Consensus 163 -----------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All 223 (242)
T cd07498 163 -----------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALI 223 (242)
T ss_pred -----------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHH
Confidence 12567899999987 99999999988754321112223357899999999999999999999
Q ss_pred HhhCCCCCHHHHHHHhhcc
Q 045720 547 KSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 547 ~q~~p~ls~~~vk~~L~~T 565 (745)
+|++|+|+++|||++|++|
T Consensus 224 ~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 224 LSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=361.17 Aligned_cols=266 Identities=29% Similarity=0.386 Sum_probs=187.1
Q ss_pred cCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhh
Q 045720 141 KDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTA 220 (745)
Q Consensus 141 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGii 220 (745)
..+++|+||+|||||+|||++||+|.++. +...+|.+.. ...|..+|||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~--~~~d~~gHGT~VAgii 56 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-----------------------ITTKSFVGGE--DVQDGHGHGTHCAGTI 56 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-----------------------ccCcccCCCC--CCCCCCCcHHHHHHHH
Confidence 45789999999999999999999998642 1223344332 3568899999999999
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC----------C
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ----------F 290 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~----------~ 290 (745)
+|+..+ +...||||+|+|+.+|++.........+++++|+||++.|++|||||||..... .
T Consensus 57 ag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~ 127 (297)
T cd07480 57 FGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLA 127 (297)
T ss_pred hcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCch
Confidence 997533 223699999999999999744557777899999999999999999999985411 1
Q ss_pred CCchHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----CCCCceEEecccccccceEEEEEcCC
Q 045720 291 YDNGIAKATFEA---------------IRRGIFVSIAAGNSGPNHYTLV-----NDAPWMLTVGASTIDRGITISVRLGN 350 (745)
Q Consensus 291 ~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~~ 350 (745)
....+......+ .++|++||+||||++....... ...+++++|++..
T Consensus 128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~------------- 194 (297)
T cd07480 128 FSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG------------- 194 (297)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC-------------
Confidence 112233222333 6799999999999986543221 1122333333211
Q ss_pred CceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCc
Q 045720 351 QETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGD 430 (745)
Q Consensus 351 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~ 430 (745)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe
Q 045720 431 STLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA 510 (745)
Q Consensus 431 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s 510 (745)
..+....|+++.+. ...||||+|||.+|.+
T Consensus 195 ----------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s 224 (297)
T cd07480 195 ----------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPGVDIVS 224 (297)
T ss_pred ----------------------------------------------CCCCCCCccccCCC----CCCceEEEeCCCCeEe
Confidence 00111223333322 2457899999999999
Q ss_pred eccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccC
Q 045720 511 AWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVG 590 (745)
Q Consensus 511 a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G 590 (745)
+.+. +.|..++|||||||+|||++||++|++|++++.+++.+|+......... . .........+|
T Consensus 225 ~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~-----~~~~~~~~~~g 289 (297)
T cd07480 225 AAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-Q-----FAPGLDLPDRG 289 (297)
T ss_pred ecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-C-----CCCCCChhhcC
Confidence 9877 3899999999999999999999999999999988888877432221000 0 01234566899
Q ss_pred CCccCcCC
Q 045720 591 AGQVNPSK 598 (745)
Q Consensus 591 ~G~id~~~ 598 (745)
+|++++.+
T Consensus 290 ~G~~~~~~ 297 (297)
T cd07480 290 VGLGLAPA 297 (297)
T ss_pred CceeecCC
Confidence 99998753
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=354.15 Aligned_cols=244 Identities=23% Similarity=0.246 Sum_probs=179.0
Q ss_pred CCCcccCC-CCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChh
Q 045720 136 SSGFWKDS-NFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGT 214 (745)
Q Consensus 136 ~~~~~~~g-~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGT 214 (745)
+..+|+.. ..|+||+|+|||+|||.+||||.++... .. ... .+.|+.+|||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----------------------~~---~~~--~~~d~~gHGT 55 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----------------------LI---SGL--TDQADSDHGT 55 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-----------------------cc---CCC--CCCCCCCCcc
Confidence 35689874 4589999999999999999999875211 00 000 2457889999
Q ss_pred HHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh----CCCcEEEeccCCCCCC-
Q 045720 215 HTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE----DGVDVLSLSFGLGLSQ- 289 (745)
Q Consensus 215 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~----~g~dVIN~SlG~~~~~- 289 (745)
||||||+|.. +..| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||||||.....
T Consensus 56 ~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 56 AVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred hhheeeeeec--------CCCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 9999999873 1223 37999999999999985 3456677777776 3467899999986421
Q ss_pred -----CCCchHHHHHHHHHhCCcEEEEecCCCCCCCCcc------------c-CCCCceEEecccccccceEEEEEcCCC
Q 045720 290 -----FYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL------------V-NDAPWMLTVGASTIDRGITISVRLGNQ 351 (745)
Q Consensus 290 -----~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~g 351 (745)
.....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+.
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~----------- 189 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT----------- 189 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------
Confidence 1233455677788899999999999998753211 1 1235677887742110
Q ss_pred ceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcc
Q 045720 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDS 431 (745)
Q Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~ 431 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEee
Q 045720 432 TLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAA 511 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa 511 (745)
...++.||+|||.. ||.|||++|+++
T Consensus 190 ----------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~ 215 (277)
T cd04843 190 ----------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTT 215 (277)
T ss_pred ----------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEec
Confidence 01378999999976 999999999999
Q ss_pred ccCCCCC-CCCcccceeeecCCcchhHHHHHHHHHHHh----h-CCCCCHHHHHHHhhcccc
Q 045720 512 WKTTVDP-LANRVYTFDIVSGTSMACPHLSGVAALLKS----A-HPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 512 ~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~vk~~L~~TA~ 567 (745)
.+..... .......|..++|||||||||||++|||++ + +|+|+++|||++|++|++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 216 GYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 8764311 111123457899999999999999999975 3 499999999999999974
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.8e-40 Score=340.18 Aligned_cols=227 Identities=36% Similarity=0.530 Sum_probs=188.3
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHG 227 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~ 227 (745)
||+|||||+||+++||+|.++ +...++|....+....|..+|||||||||++.....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~HGT~vA~ii~~~~~~~ 57 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGV 57 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCCCCCCCCCCCHHHHHHHHhcccCCC
Confidence 799999999999999999864 222333433321155678999999999999875321
Q ss_pred CcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCc
Q 045720 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGI 307 (745)
Q Consensus 228 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv 307 (745)
.+.|+||+|+|+.+|+++........+++++++++++.+++|||||||... ....+..++..+.++|+
T Consensus 58 ---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~gi 125 (229)
T cd07477 58 ---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAGI 125 (229)
T ss_pred ---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCCC
Confidence 247999999999999998333367789999999999999999999999753 34456677778899999
Q ss_pred EEEEecCCCCCCCCcc--cCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCC
Q 045720 308 FVSIAAGNSGPNHYTL--VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTF 385 (745)
Q Consensus 308 ~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (745)
++|+||||++...... ++..+++|+||+.+.
T Consensus 126 liv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------------------------- 158 (229)
T cd07477 126 LVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------------------------- 158 (229)
T ss_pred EEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------------------------
Confidence 9999999999876664 788999999998521
Q ss_pred CCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEE
Q 045720 386 CSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAA 465 (745)
Q Consensus 386 c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHH
Q 045720 466 LVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAAL 545 (745)
Q Consensus 466 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 545 (745)
.+.++.||++|+.. |+.|||.+|+++++.. .|..++|||||||+|||++||
T Consensus 159 ------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~---------~~~~~~GTS~Aap~vag~~Al 209 (229)
T cd07477 159 ------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN---------DYAYLSGTSMATPHVAGVAAL 209 (229)
T ss_pred ------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC---------CEEEEccHHHHHHHHHHHHHH
Confidence 12456899999865 9999999999998773 789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHhhcc
Q 045720 546 LKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 546 l~q~~p~ls~~~vk~~L~~T 565 (745)
|+|++|++++.+||++|++|
T Consensus 210 l~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 210 VWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999976
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-40 Score=345.37 Aligned_cols=247 Identities=32% Similarity=0.439 Sum_probs=191.3
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCCCCCCccccc---ccccCcccCccc---cceeeccCCCCCCCCCCCCChhHHHHhh
Q 045720 147 KGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGK---CELVGATCNNKL---IGVRNFFCGKDGSAIDYTGHGTHTASTA 220 (745)
Q Consensus 147 ~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~---~~~~~~~~~~kv---~g~~~~~~~~~~~~~d~~gHGThVAGii 220 (745)
+||+|||||||||++||+|.++. |... +..+........ ...++|..... ++.|..+|||||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~HGT~va~ii 73 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDN-DPMDDNGHGTHVAGII 73 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccCCCC-CCCCCCCcHHHHHHHH
Confidence 68999999999999999999752 3211 111110001111 11222322222 5678899999999999
Q ss_pred cccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHH
Q 045720 221 AGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATF 300 (745)
Q Consensus 221 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~ 300 (745)
+|...++. .+.||||+|+|+.+|++.....++..+++++++++++.+++|||+|||.... ...+..++.
T Consensus 74 ~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~ 142 (259)
T cd07473 74 GAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIA 142 (259)
T ss_pred HCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHH
Confidence 99854322 2479999999999999983334888899999999999999999999998633 567778888
Q ss_pred HHHhCCcEEEEecCCCCCCC---CcccC--CCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEec
Q 045720 301 EAIRRGIFVSIAAGNSGPNH---YTLVN--DAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYP 375 (745)
Q Consensus 301 ~a~~~Gv~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 375 (745)
++.++|+++|+||||+|... ..++. ..+++|+||+..
T Consensus 143 ~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~-------------------------------------- 184 (259)
T cd07473 143 RAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD-------------------------------------- 184 (259)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC--------------------------------------
Confidence 99999999999999998763 34443 457899998842
Q ss_pred CCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHH
Q 045720 376 DARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAY 455 (745)
Q Consensus 376 ~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 455 (745)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcch
Q 045720 456 INSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMA 535 (745)
Q Consensus 456 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 535 (745)
..+.++.||++||. +||+.|||.++++..+. ..|..++|||||
T Consensus 185 ---------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~GTS~A 227 (259)
T cd07473 185 ---------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMSGTSMA 227 (259)
T ss_pred ---------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEeccHhHH
Confidence 12345679999975 46999999999997765 479999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 536 CPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 536 aP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.6e-41 Score=359.16 Aligned_cols=272 Identities=37% Similarity=0.511 Sum_probs=210.5
Q ss_pred EEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccccCcccCccccceeeccCCC--CCCCCCCCCChhHHHHhhcccCcC
Q 045720 150 IIGVLDTGITPGHPSFN-DEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGK--DGSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 150 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~--~~~~~d~~gHGThVAGiiag~~~~ 226 (745)
+|||||+|||++||+|. ++ + ...++.+.+.|.+.. .....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 43 1 112333456666553 1156678999999999999986 2
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCC---CCCCCchHHHHHHHH
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI-EDGVDVLSLSFGLGL---SQFYDNGIAKATFEA 302 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~---~~~~~~~~~~a~~~a 302 (745)
.. .....|+||+|+|+.+|+++ ..+....+++++|++++ +.+++|||||||... .....+.+..++..+
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYA 134 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccccc
Confidence 11 11237999999999999987 55577888999999999 899999999998832 112334455666688
Q ss_pred HhCCcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCC
Q 045720 303 IRRGIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARN 379 (745)
Q Consensus 303 ~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 379 (745)
.++|+++|+||||+|.... ..++..+++|+||+...
T Consensus 135 ~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~----------------------------------------- 173 (282)
T PF00082_consen 135 EKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN----------------------------------------- 173 (282)
T ss_dssp HHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-----------------------------------------
T ss_pred cccCcceeecccccccccccccccccccccccccccccc-----------------------------------------
Confidence 8999999999999987764 35677789999998421
Q ss_pred CCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcC
Q 045720 380 HSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINST 459 (745)
Q Consensus 380 ~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 459 (745)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHH
Q 045720 460 SSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHL 539 (745)
Q Consensus 460 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 539 (745)
.+.++.||++|+... ++++||||+|||.+|.+.++.... ..|..++|||||||+|
T Consensus 174 ------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------~~~~~~~GTS~Aap~v 228 (282)
T PF00082_consen 174 ------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------GSYTSFSGTSFAAPVV 228 (282)
T ss_dssp ------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES------EEEEEEESHHHHHHHH
T ss_pred ------------------ccccccccccccccc-cccccccccccccccccccccccc------ccccccCcCCchHHHH
Confidence 124578999976543 679999999999999998876421 3588899999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 540 SGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 540 AG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
||++||++|++|++++.+||++|++||+++...+ ....+..||||+||+++|++
T Consensus 229 ag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 229 AGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999886221 23467789999999999864
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-40 Score=342.50 Aligned_cols=210 Identities=25% Similarity=0.297 Sum_probs=167.0
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC------CCCCCCCCChhHHHHh
Q 045720 146 GKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD------GSAIDYTGHGTHTAST 219 (745)
Q Consensus 146 G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~------~~~~d~~gHGThVAGi 219 (745)
+++|+|||||||||++||+|.++ +...++|....+ ....|..+||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-----------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-----------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-----------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 78999999999999999999864 111222222211 0234788999999999
Q ss_pred hcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCC------CCChHHHHHHHHHHHhCCCcEEEeccCCCCCC---C
Q 045720 220 AAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV------YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ---F 290 (745)
Q Consensus 220 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~---~ 290 (745)
|+ |+||+|+|+.+|+++... .++...+++||+||+++|+||||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 94 899999999999998322 24567899999999999999999999986421 1
Q ss_pred CCchHHHHHHHHHhCCcEEEEecCCCCCCCC-c--ccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCC
Q 045720 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPNHY-T--LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPS 367 (745)
Q Consensus 291 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 367 (745)
....+..++.+|.++|++||+||||+|.... . .++..+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2567888888999999999999999998754 3 3467899999998532
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechh
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHA 447 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 447 (745)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccccee
Q 045720 448 VSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFD 527 (745)
Q Consensus 448 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~ 527 (745)
.+.++.||++|+.. |++|||++|+++.+... .+.|.
T Consensus 172 ------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~------~~~~~ 207 (247)
T cd07491 172 ------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPPL------SNSFV 207 (247)
T ss_pred ------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCCC------CCCee
Confidence 12567799999877 99999999999876211 14799
Q ss_pred eecCCcchhHHHHHHHHHHHhh
Q 045720 528 IVSGTSMACPHLSGVAALLKSA 549 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~ 549 (745)
.++|||||||||||++||+++.
T Consensus 208 ~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 208 THTGSSVATALAAGLAALILYC 229 (247)
T ss_pred eeccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=3.1e-40 Score=352.01 Aligned_cols=247 Identities=24% Similarity=0.273 Sum_probs=182.9
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-CCC--CCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-SAI--DYTGH 212 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-~~~--d~~gH 212 (745)
...+|+.+++|+||+|+|||||||++||+|.++... ...++|....+. .+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCCCCCCcccccccc
Confidence 456999999999999999999999999999864211 112333332211 222 78899
Q ss_pred hhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCC---
Q 045720 213 GTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ--- 289 (745)
Q Consensus 213 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~--- 289 (745)
||||||||+|+..... ...||||+|+|+.+|+++ .. .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~ 155 (297)
T cd04059 87 GTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTV 155 (297)
T ss_pred CcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCcc
Confidence 9999999999853221 137999999999999997 33 334445566665544 469999999976422
Q ss_pred -CCCchHHHHHHHHHh-----CCcEEEEecCCCCCCCC----cccCCCCceEEecccccccceEEEEEcCCCceeeeeec
Q 045720 290 -FYDNGIAKATFEAIR-----RGIFVSIAAGNSGPNHY----TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEAL 359 (745)
Q Consensus 290 -~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 359 (745)
........++.++.+ +|++||+||||+|.... ......+++|+|||++.
T Consensus 156 ~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------------------- 214 (297)
T cd04059 156 DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA--------------------- 214 (297)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC---------------------
Confidence 122334444445543 69999999999997322 12256788999998521
Q ss_pred ccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccccc
Q 045720 360 WQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSL 439 (745)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~ 439 (745)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCcc-------EEeec
Q 045720 440 PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLN-------IIAAW 512 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~-------I~sa~ 512 (745)
.+.++.||++|+.. ++.|||.. |+++.
T Consensus 215 --------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~ 248 (297)
T cd04059 215 --------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTD 248 (297)
T ss_pred --------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCC
Confidence 23567899999987 89999987 77766
Q ss_pred cCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 513 KTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 513 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
.... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 249 ~~~~------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 249 LGGN------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCC------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 5521 136788999999999999999999999999999999999999985
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-39 Score=329.49 Aligned_cols=222 Identities=24% Similarity=0.283 Sum_probs=173.8
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHG 227 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~ 227 (745)
||+|||||||||++||+|.++... |+ ..... .+....+ ...|..+|||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~~------------~~~~~-~~~~~~~-~~~d~~gHGT~vAgiia~----- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----GE------------VTIDL-EIIVVSA-EGGDKDGHGTACAGIIKK----- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----cc------------ccccc-ccccCCC-CCCCCCCcHHHHHHHHHc-----
Confidence 799999999999999999864211 00 00000 0111111 456889999999999974
Q ss_pred CcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCc
Q 045720 228 ANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGI 307 (745)
Q Consensus 228 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv 307 (745)
.+|+++|+.+|+++....+..+++++||+|+++++++|||||||..... ....+..++.++.++|+
T Consensus 57 -------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g~ 122 (222)
T cd07492 57 -------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAGG 122 (222)
T ss_pred -------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCCC
Confidence 4599999999999833347888899999999999999999999986432 23566777788889999
Q ss_pred EEEEecCCCCCCCCcccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCC
Q 045720 308 FVSIAAGNSGPNHYTLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCS 387 (745)
Q Consensus 308 ~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 387 (745)
++|+||||++.... +++..+++|+||+...+.
T Consensus 123 l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------------------- 154 (222)
T cd07492 123 IIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------------------- 154 (222)
T ss_pred EEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------
Confidence 99999999987543 377888999999742111
Q ss_pred CCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEE
Q 045720 388 PETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467 (745)
Q Consensus 388 ~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 467 (745)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHH
Q 045720 468 MKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLK 547 (745)
Q Consensus 468 ~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 547 (745)
.. +.+++ ++|+.|||.+|.++.+. +.|..++|||||||+|||++|||+
T Consensus 155 ------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~~All~ 202 (222)
T cd07492 155 ------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGMVALLL 202 (222)
T ss_pred ------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHHHHHHH
Confidence 00 11233 34999999999999877 378999999999999999999999
Q ss_pred hhCCCCCHHHHHHHhhcccc
Q 045720 548 SAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 548 q~~p~ls~~~vk~~L~~TA~ 567 (745)
|++|+|+++|||++|++||+
T Consensus 203 ~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 203 SEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=4.7e-39 Score=342.44 Aligned_cols=248 Identities=28% Similarity=0.314 Sum_probs=174.7
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccce-eeccCCCCCCCCCCCCChhHHHHhhcccCcC
Q 045720 148 GVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGV-RNFFCGKDGSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 148 Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~-~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 226 (745)
.|+|||||||||++||+|.++-...... + ...+ ..... .......+ ...|..+|||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~-~---~~~~------~~~~~~~~~~~~~~-~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKN-L---VPKG------GYDGKEAGETGDIN-DIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccc-c---ccCC------CcCCccccccCCCC-cCCCCCCcHhHHHHHHhcCCC-
Confidence 3899999999999999998632111000 0 0000 00000 00000001 345778999999999998732
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCC--------CchHHH
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFY--------DNGIAK 297 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~--------~~~~~~ 297 (745)
..||||+|+|+.+|+++ ..+ ....+++++|+||++++++|||||||....... .+.+..
T Consensus 69 -----------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~ 136 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKK 136 (294)
T ss_pred -----------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHH
Confidence 15999999999999998 444 588899999999999999999999997542211 234666
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC----------------------cccCCCCceEEecccccccceEEEEEcCCCceee
Q 045720 298 ATFEAIRRGIFVSIAAGNSGPNHY----------------------TLVNDAPWMLTVGASTIDRGITISVRLGNQETYD 355 (745)
Q Consensus 298 a~~~a~~~Gv~vV~AAGN~g~~~~----------------------~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 355 (745)
++..+.++|++||+||||+|.... .+++..+++|+|||+
T Consensus 137 ~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~------------------- 197 (294)
T cd07482 137 AINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT------------------- 197 (294)
T ss_pred HHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee-------------------
Confidence 777788999999999999986542 122334455555543
Q ss_pred eeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccc
Q 045720 356 GEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQ 435 (745)
Q Consensus 356 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~ 435 (745)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCC
Q 045720 436 RNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTT 515 (745)
Q Consensus 436 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~ 515 (745)
...+.++.||++|+.. +|++|||+++.......
T Consensus 198 ----------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~ 230 (294)
T cd07482 198 ----------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYG 230 (294)
T ss_pred ----------------------------------------CCCCCcCccccCCCCc-------ceEECCCCCcccccccC
Confidence 2234567899998653 59999999885322111
Q ss_pred CCC-------------CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCH-HHHHHHhhcc
Q 045720 516 VDP-------------LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH-AAIKSAMMTT 565 (745)
Q Consensus 516 ~~~-------------~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~-~~vk~~L~~T 565 (745)
... .....+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 231 KEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 100 1123357899999999999999999999999999999 9999999986
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.9e-38 Score=330.35 Aligned_cols=242 Identities=28% Similarity=0.308 Sum_probs=186.5
Q ss_pred CCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCC-CCCCCCCCCCChhHHHHhhccc
Q 045720 145 FGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCG-KDGSAIDYTGHGTHTASTAAGN 223 (745)
Q Consensus 145 ~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~-~~~~~~d~~gHGThVAGiiag~ 223 (745)
+|+||+|+|||+||+++||+|.+........ ..... .+....|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYY---------------------VAVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccc---------------------cccccccCCCCCCCCChHHHHHHHHhcC
Confidence 6999999999999999999998752211000 00000 0114567899999999999998
Q ss_pred CcCCCcccccCCCceeeecCCceEEEEEeeCCCC-CCChHHHHHHHHHHHhCCCcEEEeccCCCCCC------------C
Q 045720 224 FVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNV-YCPESAVIAGIDAAIEDGVDVLSLSFGLGLSQ------------F 290 (745)
Q Consensus 224 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~------------~ 290 (745)
..+ ..+.|+||+|+|+.+|+++... ......+.++++++++.+++|||||||..... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 533 2247999999999999998332 36677789999999999999999999987522 1
Q ss_pred CCchHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------cCCCCceEEecccccccceEEEEEcCCCceeeeeeccc
Q 045720 291 YDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTL---------VNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQ 361 (745)
Q Consensus 291 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 361 (745)
....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------------- 189 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------------- 189 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------
Confidence 445667777788899999999999998654332 24557889998853221
Q ss_pred CCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccce
Q 045720 362 WTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPN 441 (745)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 441 (745)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeec--ccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCC
Q 045720 442 VRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVA--FSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPL 519 (745)
Q Consensus 442 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~ 519 (745)
.... ||++|+.. ..++++|||.+|.++.+...
T Consensus 190 --------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~~--- 223 (267)
T cd04848 190 --------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDGG--- 223 (267)
T ss_pred --------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCCC---
Confidence 2233 48888654 24579999999999987321
Q ss_pred CCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccc
Q 045720 520 ANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTAD 567 (745)
Q Consensus 520 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 567 (745)
..|..++|||||||+|||++||++|++|+++++|||++|++||+
T Consensus 224 ----~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 ----NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ----CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 37899999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-37 Score=325.19 Aligned_cols=359 Identities=23% Similarity=0.312 Sum_probs=261.4
Q ss_pred CCceEEEEeCCCC-CCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCH-----HHHHHhhcCCCeE
Q 045720 39 GLQTYIIYVQKPE-QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTA-----EEVKAMETKKGFI 112 (745)
Q Consensus 39 ~~~~yIV~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~-----~~i~~L~~~p~V~ 112 (745)
.+.+|||.|+.-. ...+...+++.|+...... =+--........|...|.-+.++-.. -++++|..+|+|+
T Consensus 48 ve~EyIv~F~~y~~Ak~r~syi~skl~gS~Vtn---WriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKPAKDRRSYIESKLRGSGVTN---WRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEecccccchHHHHHHHHHhhcCCCCc---eeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 3678999999765 2334444455444221000 00001122233455556655554432 3588999999999
Q ss_pred EEEEcceeccccc---------------------C---------CCCccccC------------CCCCcccCCCCCCCeE
Q 045720 113 SARVENTLHLHTT---------------------H---------TPNFLGLH------------RSSGFWKDSNFGKGVI 150 (745)
Q Consensus 113 ~V~~~~~~~~~~~---------------------~---------s~~~~g~~------------~~~~~~~~g~~G~Gv~ 150 (745)
.|.|.+.+..-.. . .+..|+-. .++-+|+.|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9999876543100 0 00011110 1445999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCCCCCCCCChhHHHHhhcccCcCCCcc
Q 045720 151 IGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGSAIDYTGHGTHTASTAAGNFVHGANI 230 (745)
Q Consensus 151 VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 230 (745)
|||.|||+.-+||.|+. +....++.... ...|.-||||.|||+|||...
T Consensus 205 vAiFDTGl~~~HPHFrn------------------------vKERTNWTNE~--tLdD~lgHGTFVAGvia~~~e----- 253 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRN------------------------VKERTNWTNED--TLDDNLGHGTFVAGVIAGRNE----- 253 (1033)
T ss_pred EEEeecccccCCccccc------------------------hhhhcCCcCcc--ccccCcccceeEeeeeccchh-----
Confidence 99999999999999973 11122233221 456788999999999998842
Q ss_pred cccCCCceeeecCCceEEEEEeeCCCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCchHHHHHHHHHhCCcEE
Q 045720 231 FGQANGTAVGMAPLAHLAVYKVCNPNVY-CPESAVIAGIDAAIEDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRRGIFV 309 (745)
Q Consensus 231 ~g~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~Gv~v 309 (745)
..|.||+++|+++|||. +.. .+++..++|+.||+....||+|+|+|++. +.+.++-+.+......+|++
T Consensus 254 -------c~gfa~d~e~~~frvft-~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 254 -------CLGFASDTEIYAFRVFT-DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred -------hcccCCccceeEEEeec-cceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCcEEE
Confidence 37999999999999998 544 78889999999999999999999999973 55667776777788899999
Q ss_pred EEecCCCCCCCCcccCCC--CceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCC
Q 045720 310 SIAAGNSGPNHYTLVNDA--PWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCS 387 (745)
Q Consensus 310 V~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 387 (745)
|.|+||+|+-.++..+.+ ..||.||..
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGI--------------------------------------------------- 352 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGI--------------------------------------------------- 352 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeeccc---------------------------------------------------
Confidence 999999999877665433 355555542
Q ss_pred CCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEEEE
Q 045720 388 PETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALV 467 (745)
Q Consensus 388 ~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 467 (745)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceEecCCCCCeeecccCCCCCCC----CCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHHHHH
Q 045720 468 MKGTVIGGGSAPQVVAFSGRGPSRI----SPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLSGVA 543 (745)
Q Consensus 468 ~~~~~~~~~~~~~~a~fSs~Gp~~~----~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 543 (745)
...+.+|.|||||-+.. ..||+||||++-|.+|...... .+...+||||.|+|.|||++
T Consensus 353 --------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSVaSPVVAGav 415 (1033)
T KOG4266|consen 353 --------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSVASPVVAGAV 415 (1033)
T ss_pred --------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCcccchhhhcee
Confidence 23458999999996542 2589999999999999876555 36789999999999999999
Q ss_pred HHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCCCC
Q 045720 544 ALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKAND 601 (745)
Q Consensus 544 ALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~Al~ 601 (745)
+|+.+ +.--+.|+.+|++|+..|.++... .-++||+|++|+.++.+
T Consensus 416 ~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 416 CLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 99975 334568999999999999998543 44789999999988876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-35 Score=324.88 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=182.7
Q ss_pred CCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045720 210 TGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVY--CPESAVIAGIDAAIEDGVDVLSLSFGLGL 287 (745)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (745)
..||||||||++|+..+... ..||||+|+|+.+++.+..-+ .+...+.+|+..++++++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 46999999999999755432 369999999999999884334 45567899999999999999999999865
Q ss_pred -CCCCCchHHHHHHHHHhCCcEEEEecCCCCCCCCccc---CCCCceEEecccccccceEEEEEcCCCceeeeeecccCC
Q 045720 288 -SQFYDNGIAKATFEAIRRGIFVSIAAGNSGPNHYTLV---NDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWT 363 (745)
Q Consensus 288 -~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~---~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 363 (745)
.+.....++.+-..+.++|+++|.||||.|+...+++ +....+|.|||.-......+.
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 3444455554444455899999999999999987765 345588999984211110000
Q ss_pred CCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEE
Q 045720 364 DIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVR 443 (745)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 443 (745)
|
T Consensus 444 ------y------------------------------------------------------------------------- 444 (1304)
T KOG1114|consen 444 ------Y------------------------------------------------------------------------- 444 (1304)
T ss_pred ------h-------------------------------------------------------------------------
Confidence 0
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcc
Q 045720 444 VSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRV 523 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~ 523 (745)
... ..-.+.+..||||||+. ||-+-..|+|||+.|.|--.-..
T Consensus 445 ----------~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tl------- 487 (1304)
T KOG1114|consen 445 ----------SVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTL------- 487 (1304)
T ss_pred ----------hhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhh-------
Confidence 000 01123467899999999 88999999999999977433221
Q ss_pred cceeeecCCcchhHHHHHHHHHHHh----hCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCCC
Q 045720 524 YTFDIVSGTSMACPHLSGVAALLKS----AHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSKA 599 (745)
Q Consensus 524 ~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~A 599 (745)
..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.- .++.+|.|+|++++|
T Consensus 488 q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 488 QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcceeehhHH
Confidence 2567899999999999999999864 567899999999999999998543 578999999999999
Q ss_pred CC
Q 045720 600 ND 601 (745)
Q Consensus 600 l~ 601 (745)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 76
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-34 Score=291.94 Aligned_cols=194 Identities=22% Similarity=0.192 Sum_probs=143.9
Q ss_pred CCCCCCChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHH--HhCCCcEEEecc
Q 045720 206 AIDYTGHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAA--IEDGVDVLSLSF 283 (745)
Q Consensus 206 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--~~~g~dVIN~Sl 283 (745)
..|.++|||||||||||. .|++|+++|+..++.. . ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 358999999999999987 4677999998765533 1 233466777887 567899999999
Q ss_pred CCCCCCC------CCchHHHHHHHHHhC-CcEEEEecCCCCCCC-----CcccCCCCceEEecccccccceEEEEEcCCC
Q 045720 284 GLGLSQF------YDNGIAKATFEAIRR-GIFVSIAAGNSGPNH-----YTLVNDAPWMLTVGASTIDRGITISVRLGNQ 351 (745)
Q Consensus 284 G~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g 351 (745)
|...... ..+.+..++.++.++ |+++|+||||+|... ...+...+++|+|||......
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 9864321 234566667776666 999999999999853 234567789999998532110
Q ss_pred ceeeeeecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcc
Q 045720 352 ETYDGEALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDS 431 (745)
Q Consensus 352 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~ 431 (745)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEee
Q 045720 432 TLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAA 511 (745)
Q Consensus 432 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa 511 (745)
....+.||++|.....++..||||+|||++|++
T Consensus 164 ----------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s- 196 (247)
T cd07488 164 ----------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL- 196 (247)
T ss_pred ----------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC-
Confidence 012345666543333367899999999999998
Q ss_pred ccCCCCCCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCH------HHHHHHhhcc
Q 045720 512 WKTTVDPLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSH------AAIKSAMMTT 565 (745)
Q Consensus 512 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~vk~~L~~T 565 (745)
+. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 197 -~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 -PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred -CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 33 37889999999999999999999999987764 4567777665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=3.7e-31 Score=272.00 Aligned_cols=233 Identities=35% Similarity=0.440 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCC--CCCCCCCCChhHHHHhhcccCcC
Q 045720 149 VIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKD--GSAIDYTGHGTHTASTAAGNFVH 226 (745)
Q Consensus 149 v~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~--~~~~d~~gHGThVAGiiag~~~~ 226 (745)
|+|+|||+|++++||+|..... . .....++....+ ....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFG---------G-----------GDGGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhcccc---------C-----------cccccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 6899999999999998721100 0 000111111100 03457889999999999988533
Q ss_pred CCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCCCCCCCchHHHHHHHHHhC
Q 045720 227 GANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAI-EDGVDVLSLSFGLGLSQFYDNGIAKATFEAIRR 305 (745)
Q Consensus 227 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~a~~~a~~~ 305 (745)
.. ..|+||+++|+.+|+...........+++++++++ ..+++|||||||..... ....+...+.++.++
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~ 130 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAK 130 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 21 16999999999999998333367788999999999 89999999999987433 345667777788887
Q ss_pred -CcEEEEecCCCCCCCC---cccCCCCceEEecccccccceEEEEEcCCCceeeeeecccCCCCCCCceeEEecCCCCCC
Q 045720 306 -GIFVSIAAGNSGPNHY---TLVNDAPWMLTVGASTIDRGITISVRLGNQETYDGEALWQWTDIPSKRLPLVYPDARNHS 381 (745)
Q Consensus 306 -Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (745)
|+++|+||||.+.... ..++..+++|+||+.+.+.
T Consensus 131 ~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------------- 169 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------------- 169 (241)
T ss_pred cCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------------
Confidence 9999999999998876 4778899999999863221
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCC
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSS 461 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEecceEecCCCCCeee-cccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCcccceeeecCCcchhHHHH
Q 045720 462 PTAALVMKGTVIGGGSAPQVV-AFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFDIVSGTSMACPHLS 540 (745)
Q Consensus 462 ~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 540 (745)
... .++++| .|||+.|||.++.+..... ...+..++|||||||+||
T Consensus 170 ------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~~-------~~~~~~~~GTS~Aap~va 216 (241)
T cd00306 170 ------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTTG-------GGGYATLSGTSMAAPIVA 216 (241)
T ss_pred ------------------CccCCcCCCC--------CCceEEeCcCCccCcccCC-------CCCeEeeccHHHHHHHHH
Confidence 111 344444 4669999999998752221 147899999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHhhcc
Q 045720 541 GVAALLKSAHPNWSHAAIKSAMMTT 565 (745)
Q Consensus 541 G~aALl~q~~p~ls~~~vk~~L~~T 565 (745)
|++||++|++|++++.++|++|++|
T Consensus 217 G~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 217 GVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4e-24 Score=243.85 Aligned_cols=273 Identities=33% Similarity=0.469 Sum_probs=201.3
Q ss_pred CCCcccC--CCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCCC-CCCCCCC
Q 045720 136 SSGFWKD--SNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDGS-AIDYTGH 212 (745)
Q Consensus 136 ~~~~~~~--g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~~-~~d~~gH 212 (745)
....|.. +++|+|++|+|||+||+..||+|.+... ..++|.+..+.. ..|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV-----------------------AGGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccc-----------------------cccccccCCCCCCCCCCCCC
Confidence 3457887 8999999999999999999999986521 113444443312 5789999
Q ss_pred hhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCC-CCCChHHHHHHHHHHHhCC--CcEEEeccCCCCCC
Q 045720 213 GTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPN-VYCPESAVIAGIDAAIEDG--VDVLSLSFGLGLSQ 289 (745)
Q Consensus 213 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-~g~~~~~i~~ai~~a~~~g--~dVIN~SlG~~~~~ 289 (745)
||||+|++++.... + .....|+||+++++.+|++... .....++++++|+++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~------~-~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFD------N-GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeeccc------C-CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 99999999984211 0 1114799999999999999833 3367778899999999999 99999999986222
Q ss_pred CCCchHHHHHHHHHhCC-cEEEEecCCCCCCCC----cccCCC--CceEEecccccccceEEEEEcCCCceeeeeecccC
Q 045720 290 FYDNGIAKATFEAIRRG-IFVSIAAGNSGPNHY----TLVNDA--PWMLTVGASTIDRGITISVRLGNQETYDGEALWQW 362 (745)
Q Consensus 290 ~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 362 (745)
.....+..++..++..| +++|+|+||.+.+.. .++... +.+++||+...
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------------ 314 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------------ 314 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------------------
Confidence 33455666666777777 999999999987752 223322 36677766311
Q ss_pred CCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccccceE
Q 045720 363 TDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNSLPNV 442 (745)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~ 442 (745)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEe-----eccCCCC
Q 045720 443 RVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIA-----AWKTTVD 517 (745)
Q Consensus 443 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~s-----a~~~~~~ 517 (745)
.+.++.||++|+.. +.++.|||.+|.+ .+++..
T Consensus 315 -----------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~- 352 (508)
T COG1404 315 -----------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG- 352 (508)
T ss_pred -----------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCCc-
Confidence 13668899999752 2399999999988 554431
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCC-CCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHP-NWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNP 596 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~ 596 (745)
..|..++||||++|||+|++||+++.+| .+++.+++..+..++.... .......++.|..+.
T Consensus 353 ------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 415 (508)
T COG1404 353 ------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTP-----------LSGVDNLVGGGLANL 415 (508)
T ss_pred ------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccccc-----------CCccccccccCcccc
Confidence 2499999999999999999999999999 8999999999888887400 112344667776666
Q ss_pred CCCCC
Q 045720 597 SKAND 601 (745)
Q Consensus 597 ~~Al~ 601 (745)
..+..
T Consensus 416 ~~~~~ 420 (508)
T COG1404 416 DAAAT 420 (508)
T ss_pred ccccc
Confidence 55544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.2e-23 Score=210.81 Aligned_cols=304 Identities=19% Similarity=0.212 Sum_probs=185.7
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-CCC--C--CC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-SAI--D--YT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-~~~--d--~~ 210 (745)
+..+|.+|++||+|+++|+|.||||-|||+..+ ..--..|+|..++-- .|+ | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 355999999999999999999999999999743 112234555544210 111 2 47
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
.|||.|||-+++...++... .|||.+.++..+|+++ ..+..|+++|-..--. ...+|.+-|||.....
T Consensus 209 shgtrcagev~aardngicg--------vgvaydskvagirmld---qpymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLD---QPYMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred ccCccccceeeeeccCCcee--------eeeeeccccceeeecC---CchhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 89999999988776544332 6999999999999997 3455666655322211 2478999999986532
Q ss_pred -CCCch---HHHHHHHHHh-----CCcEEEEecCCCCCCC-Cc--ccCCCCceEEecccccccceEEEEEcCCCceeeee
Q 045720 290 -FYDNG---IAKATFEAIR-----RGIFVSIAAGNSGPNH-YT--LVNDAPWMLTVGASTIDRGITISVRLGNQETYDGE 357 (745)
Q Consensus 290 -~~~~~---~~~a~~~a~~-----~Gv~vV~AAGN~g~~~-~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 357 (745)
..+.+ ..+++-+-++ .|-++|.|.|..|.+. +. -.+.+-|.|++-+. +.+|+..
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsa-----------indg~na--- 343 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSA-----------INDGENA--- 343 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehh-----------hcCCccc---
Confidence 22222 2222222222 4568999999887542 22 22344555555432 1111100
Q ss_pred ecccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCcccccccc
Q 045720 358 ALWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRN 437 (745)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 437 (745)
- .++-|.+
T Consensus 344 ---------------h--------ydescss------------------------------------------------- 351 (629)
T KOG3526|consen 344 ---------------H--------YDESCSS------------------------------------------------- 351 (629)
T ss_pred ---------------c--------ccchhhH-------------------------------------------------
Confidence 0 0111211
Q ss_pred ccceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCC
Q 045720 438 SLPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVD 517 (745)
Q Consensus 438 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~ 517 (745)
-.-+.||+-|..+.. |+. .
T Consensus 352 -----------------------------------------tlastfsng~rnpet-----------gva--t------- 370 (629)
T KOG3526|consen 352 -----------------------------------------TLASTFSNGGRNPET-----------GVA--T------- 370 (629)
T ss_pred -----------------------------------------HHHHHhhcCCcCCCc-----------cee--e-------
Confidence 022467776655421 111 1
Q ss_pred CCCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCC----cccCCCCCCCCccccCCCc
Q 045720 518 PLANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGK----PILDCTRLPADLYAVGAGQ 593 (745)
Q Consensus 518 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~----~~~~~~~~~~~~~~~G~G~ 593 (745)
.+.++......||||.|||-.||+.||.++++|.|+..+++.+-.-|.++..-... .+.-++-...-+..||+|.
T Consensus 371 -tdlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgv 449 (629)
T KOG3526|consen 371 -TDLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGV 449 (629)
T ss_pred -eccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeeccccccc
Confidence 12222467788999999999999999999999999999999988877766431110 0111222334556899999
Q ss_pred cCcCCCCCCCceecCCCCCcccccccCCC
Q 045720 594 VNPSKANDPGLVYDIQPDDYIPYLCGLNY 622 (745)
Q Consensus 594 id~~~Al~~~lv~d~~~~d~~~~~~~~~~ 622 (745)
+|+.+-+....-....+ -+|-|..|.
T Consensus 450 ldagamv~lak~wktvp---pryhc~ag~ 475 (629)
T KOG3526|consen 450 LDAGAMVMLAKAWKTVP---PRYHCTAGL 475 (629)
T ss_pred ccHHHHHHHHHHhccCC---Cceeecccc
Confidence 99977665332222222 245787764
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=1.8e-17 Score=180.70 Aligned_cols=100 Identities=27% Similarity=0.389 Sum_probs=81.4
Q ss_pred eeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CCCchHHHHHHHHHhCCcEEEE
Q 045720 238 AVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIED---GVDVLSLSFGLGLSQ---FYDNGIAKATFEAIRRGIFVSI 311 (745)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~---~~~~~~~~a~~~a~~~Gv~vV~ 311 (745)
+.||||+|+|+.|++.+ +. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 83 ~~gvAP~a~i~~~~~~~-~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 83 AGAIAPGANITLYFAPG-TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHhccCCCeEEEEEECC-cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 57999999999999987 32 45678888888887 999999999987432 2335677788889999999999
Q ss_pred ecCCCCCCCC-----------cccCCCCceEEecccccccc
Q 045720 312 AAGNSGPNHY-----------TLVNDAPWMLTVGASTIDRG 341 (745)
Q Consensus 312 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 341 (745)
|+||+|.... .+++..|+|++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35789999999999866543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.08 E-value=7.9e-10 Score=104.29 Aligned_cols=113 Identities=28% Similarity=0.343 Sum_probs=87.5
Q ss_pred CCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccccc-cccc
Q 045720 366 PSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTLIQ-RNSL 439 (745)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~~ 439 (745)
.....+++|.+. |....+...+++|||+||+|+.| ..+++.+||.++|++++.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 456788888764 33445556789999999999999 777888999999999886543222211 3578
Q ss_pred ceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCC
Q 045720 440 PNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSR 491 (745)
Q Consensus 440 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 491 (745)
|++.|+..+|..|++++++ ++++.+..+.. ....+.++.||||||.-
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777776655 46778899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.03 E-value=2.9e-09 Score=98.28 Aligned_cols=117 Identities=44% Similarity=0.673 Sum_probs=91.2
Q ss_pred EEcCCCceeeeeecccCCCCCCCceeEEecCC-CCCCCcCCCCCCCCCCCcccceEEEEecCCc------hhhhhhcCce
Q 045720 346 VRLGNQETYDGEALWQWTDIPSKRLPLVYPDA-RNHSTTTFCSPETLKSVDVKGKVVLCQRGAS------GDDVLNAGGA 418 (745)
Q Consensus 346 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~------~~~~~~~ga~ 418 (745)
+.++|++.+.|++++.+.. ..++++|... ........|.+......+++|||+||+|+.| ..+++.+||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 5789999999999996543 4567776433 2233457898888888999999999999886 5667889999
Q ss_pred EEEEeecCCCCccccccccccceEEechhhHHHHHHHHHcCCCCeEE
Q 045720 419 AMILMNDELFGDSTLIQRNSLPNVRVSHAVSESIKAYINSTSSPTAA 465 (745)
Q Consensus 419 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 465 (745)
|+|++++.............+|.+.|+.++|+.|++|++++.+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886554333333568999999999999999999988766554
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.9e-09 Score=114.29 Aligned_cols=286 Identities=17% Similarity=0.161 Sum_probs=176.2
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccccCcccCccccceeeccCCCCC-----CCCCCC
Q 045720 136 SSGFWKDSNFGKGVIIGVLDTGITPGHPSFNDEGMPPPPAKWRGKCELVGATCNNKLIGVRNFFCGKDG-----SAIDYT 210 (745)
Q Consensus 136 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~g~~~~~~~~~~~~~~~~~~~~~kv~g~~~~~~~~~~-----~~~d~~ 210 (745)
....|..+++|+++.|+|.|+|++..||+.... +...+.+++....+. +.....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 466999999999999999999999999999753 223344444444322 222357
Q ss_pred CChhHHHHhhcccCcCCCcccccCCCceeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCCC
Q 045720 211 GHGTHTASTAAGNFVHGANIFGQANGTAVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIE-DGVDVLSLSFGLGLSQ 289 (745)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~ 289 (745)
.|||-|++-.+....+..- ..|+++++++..++++.. ...+...+...... .-+++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~----~v~~~~~~~~~~~~~~~~di~scsw~pddd~ 148 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG----CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDG 148 (431)
T ss_pred ccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee----ecccceecccccCCCCCceeecCcCCcccCC
Confidence 8999999999987522111 279999999999999871 12222233222222 2478999999976422
Q ss_pred C----CCchHHHHHHH-----HHhCCcEEEEecCCCCCCCCccc--CCCCceEEecccccccceEEEEEcCCCceeeeee
Q 045720 290 F----YDNGIAKATFE-----AIRRGIFVSIAAGNSGPNHYTLV--NDAPWMLTVGASTIDRGITISVRLGNQETYDGEA 358 (745)
Q Consensus 290 ~----~~~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 358 (745)
. .......+..+ ...+|-+.|+|.||.|....... ...+.+.++.-...+.
T Consensus 149 ~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~------------------ 210 (431)
T KOG3525|consen 149 KTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQ------------------ 210 (431)
T ss_pred CcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccc------------------
Confidence 1 11122222222 22578899999999886644322 2222222222111110
Q ss_pred cccCCCCCCCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCchhhhhhcCceEEEEeecCCCCccccccccc
Q 045720 359 LWQWTDIPSKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGASGDDVLNAGGAAMILMNDELFGDSTLIQRNS 438 (745)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 438 (745)
|.. .....++
T Consensus 211 ---------------------------~~~----~p~y~~~--------------------------------------- 220 (431)
T KOG3525|consen 211 ---------------------------CGK----KPQYRER--------------------------------------- 220 (431)
T ss_pred ---------------------------cCC----Ccccccc---------------------------------------
Confidence 000 0000000
Q ss_pred cceEEechhhHHHHHHHHHcCCCCeEEEEecceEecCCCCCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCC
Q 045720 439 LPNVRVSHAVSESIKAYINSTSSPTAALVMKGTVIGGGSAPQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDP 518 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~ 518 (745)
-....-+.+|+.+| .. . -|..+....
T Consensus 221 -------------------------------------C~~~~~s~~s~~~~-~~--------~-----~~~~~~~~~--- 246 (431)
T KOG3525|consen 221 -------------------------------------CASCLASTYSSGGP-TE--------E-----CIVCTDPRH--- 246 (431)
T ss_pred -------------------------------------ccccccccccCCCC-cc--------e-----eeeecCCCc---
Confidence 00113356788887 31 0 112222211
Q ss_pred CCCcccceeeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHHhhcccccccCCCCcccCCCCCCCCccccCCCccCcCC
Q 045720 519 LANRVYTFDIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSAMMTTADTVNLEGKPILDCTRLPADLYAVGAGQVNPSK 598 (745)
Q Consensus 519 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~id~~~ 598 (745)
..-.-..|||.++|+.||+.+|.++++|.++..++..+...++.........++.+.........+|+|++|+..
T Consensus 247 -----~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~ 321 (431)
T KOG3525|consen 247 -----SCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKA 321 (431)
T ss_pred -----cccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcch
Confidence 244556799999999999999999999999999999999999987765444444444334445589999999876
Q ss_pred CCC
Q 045720 599 AND 601 (745)
Q Consensus 599 Al~ 601 (745)
-+.
T Consensus 322 ~~~ 324 (431)
T KOG3525|consen 322 LVS 324 (431)
T ss_pred hhh
Confidence 655
No 47
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.75 E-value=2e-08 Score=85.11 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=55.1
Q ss_pred eEEEEeCCCC-----CCChHHHHHhhchhccccCCCCcccCCCccEEEEecceeeEEEEEeCHHHHHHhhcCCCeEEEEE
Q 045720 42 TYIIYVQKPE-----QGDLDSWYRSFLPEATISNSSDHDRNQSSRMLYFYKNVISGFAARLTAEEVKAMETKKGFISARV 116 (745)
Q Consensus 42 ~yIV~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~ 116 (745)
+|||+|+++. ...+..++.+++++..... .....++.+.|...|+||+++++++++++|+++|+|++|+|
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~ 75 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSA-----SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEP 75 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhh-----cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEe
Confidence 6999999986 2345556665544421100 14588999999988999999999999999999999999999
Q ss_pred cceeccc
Q 045720 117 ENTLHLH 123 (745)
Q Consensus 117 ~~~~~~~ 123 (745)
|+.++++
T Consensus 76 D~~v~l~ 82 (82)
T PF05922_consen 76 DQVVSLH 82 (82)
T ss_dssp ECEEEE-
T ss_pred CceEecC
Confidence 9988764
No 48
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.71 E-value=1.7e-07 Score=84.43 Aligned_cols=87 Identities=24% Similarity=0.349 Sum_probs=60.3
Q ss_pred eeecCCcCEEEEEEEEecCCCceeEEEEEeCC--------CC----------e-EEEEEcCeEEeccCCcEEEEEEEEEe
Q 045720 654 SIKLGYSPQTYHRTVTNVGKAKSFYTRQMVAP--------EG----------V-EITVQPHNISFAAKNQKVTYSVTFTR 714 (745)
Q Consensus 654 ~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~~p--------~~----------~-~v~v~p~~~~~~~~~~~~~~~vt~~~ 714 (745)
++.......++++||+|.|+...+|++++... .| . .+...+.+|++++ |++++|+|+|+.
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~ 80 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITP 80 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE-
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEe
Confidence 34434446899999999999999999987610 11 1 6777899999999 999999999999
Q ss_pred cCC---CCCCeEEEEEEEEc-Cc-eeEEeeEE
Q 045720 715 TGN---TNASSAQAYLSWVS-DK-YTVKSPIA 741 (745)
Q Consensus 715 ~~~---~~~~~~~G~~~~~~-~~-~~v~~P~~ 741 (745)
+.. ....+++|+|.|++ +. +.+++||.
T Consensus 81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 663 33589999999994 44 49999984
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.4e-06 Score=101.44 Aligned_cols=94 Identities=23% Similarity=0.240 Sum_probs=58.3
Q ss_pred eeeecCCceEEEEEeeCCCCCCChHHHHHHHHHHHhCC-CcEEEeccCCCC-----CCCCCchHHHHHHHHHhCCcEEEE
Q 045720 238 AVGMAPLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDG-VDVLSLSFGLGL-----SQFYDNGIAKATFEAIRRGIFVSI 311 (745)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g-~dVIN~SlG~~~-----~~~~~~~~~~a~~~a~~~Gv~vV~ 311 (745)
..-+||+|+|..|-.-. ........|+.+....= --+|-.||+... .+.+-+.+......|..+|+.+++
T Consensus 288 s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 36799999999986622 12222223333222211 134445666532 111334455556678899999999
Q ss_pred ecCCCCCCCCc--------ccCCCCceEEecc
Q 045720 312 AAGNSGPNHYT--------LVNDAPWMLTVGA 335 (745)
Q Consensus 312 AAGN~g~~~~~--------~~~~~p~vitVga 335 (745)
|+|.+|....+ +++.+|++++||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999866532 4578999999997
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.28 E-value=2.8e-06 Score=77.85 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=69.2
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc---cc--cccc
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST---LI--QRNS 438 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~---~~--~~~~ 438 (745)
.-++++.+. ...+.|.+..+...+++|||+||+|+.| ..+++++||.++|++|+....... .. ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~ 94 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLK 94 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCe
Confidence 345666432 1237798888887899999999999999 678999999999999876532111 11 2446
Q ss_pred cceEEechhhHHHHHHHHHcCCCC
Q 045720 439 LPNVRVSHAVSESIKAYINSTSSP 462 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~~~~~ 462 (745)
+|.+.|+..+|+.|++++..+.+.
T Consensus 95 iP~~~Is~~~G~~l~~~l~~g~~v 118 (122)
T cd04816 95 VPVGVITKAAGAALRRRLGAGETL 118 (122)
T ss_pred eeEEEEcHHHHHHHHHHHcCCCEE
Confidence 999999999999999999876543
No 51
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.25 E-value=1.2e-05 Score=73.99 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=68.2
Q ss_pred eeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-cccccccceEE
Q 045720 370 LPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-LIQRNSLPNVR 443 (745)
Q Consensus 370 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-~~~~~~~p~~~ 443 (745)
+|++..........+.|.+...+..+++|||+|++|+.| ..+++.+||.++|++|+....... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 676665544445668898876666689999999999999 788999999999999886443221 12233456666
Q ss_pred echhhHHHHHHHHHcCCCC
Q 045720 444 VSHAVSESIKAYINSTSSP 462 (745)
Q Consensus 444 i~~~~g~~l~~~~~~~~~~ 462 (745)
+ .++|+.|++.+..+...
T Consensus 108 ~-~~~G~~l~~~l~~G~~v 125 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNV 125 (129)
T ss_pred e-HHHHHHHHHHHhcCCeE
Confidence 6 99999999999876543
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.24 E-value=6.3e-06 Score=75.05 Aligned_cols=82 Identities=27% Similarity=0.332 Sum_probs=63.5
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccc----ccccccceEEechhhHHHH
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTL----IQRNSLPNVRVSHAVSESI 452 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 452 (745)
..+.|.+... ..+++|||+||+|+.| ..+++.+||.++|++++........ .....+|++.|+.++|..|
T Consensus 26 ~~~~C~~~~~-~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTN-AAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCc-CCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 4567988776 3569999999999988 6678889999999998865421111 1234799999999999999
Q ss_pred HHHHHcCCCCeE
Q 045720 453 KAYINSTSSPTA 464 (745)
Q Consensus 453 ~~~~~~~~~~~~ 464 (745)
++|+..+...++
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999987765443
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.21 E-value=6.9e-06 Score=74.37 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=65.4
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-cccc-------ccccccceEEechhhH
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-DSTL-------IQRNSLPNVRVSHAVS 449 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-~~~~-------~~~~~~p~~~i~~~~g 449 (745)
.+.|.+.. ...+++|+|+|++||.| ..+++.+||.++|++|+.... .... ...-.+|++.|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 36798644 35689999999999999 778999999999999876442 1111 1234799999999999
Q ss_pred HHHHHHHHcCCCCeEEE
Q 045720 450 ESIKAYINSTSSPTAAL 466 (745)
Q Consensus 450 ~~l~~~~~~~~~~~~~i 466 (745)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776655
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.20 E-value=6.5e-06 Score=76.66 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred cCCCCCCCC--CCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcccc----ccccccceEEechhhHHH
Q 045720 383 TTFCSPETL--KSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTL----IQRNSLPNVRVSHAVSES 451 (745)
Q Consensus 383 ~~~c~~~~~--~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 451 (745)
.+.|.+... .+.++.|+|+|++||.| ..+++.+||.++|++|+...+.... .....+|.+.|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 467988776 56789999999999999 7889999999999999876222111 123478999999999999
Q ss_pred HHHHHHcCCCCeEE
Q 045720 452 IKAYINSTSSPTAA 465 (745)
Q Consensus 452 l~~~~~~~~~~~~~ 465 (745)
|++++..+.+.+++
T Consensus 124 l~~~l~~G~~Vtv~ 137 (138)
T cd02122 124 ILELLERGISVTMV 137 (138)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999887665543
No 55
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.16 E-value=1e-05 Score=72.87 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=67.3
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcc----ccccccc
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDS----TLIQRNS 438 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~----~~~~~~~ 438 (745)
..+|++.... ...|.+..+.+.+++|||+|++||.| ..+++.+||.++|++|+...... .......
T Consensus 20 ~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCC-----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 4566666553 36799888888899999999999999 78899999999999998652111 1113456
Q ss_pred cceEEechhhHHHHHHHHHc
Q 045720 439 LPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 439 ~p~~~i~~~~g~~l~~~~~~ 458 (745)
||++.|+.++|+.|.+.+..
T Consensus 95 IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccEEEEeHHHHHHHHHHhcc
Confidence 89999999999999888753
No 56
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.10 E-value=4e-06 Score=73.89 Aligned_cols=73 Identities=33% Similarity=0.455 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC----CCccccccccccceEEechhhHHHHHH
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL----FGDSTLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|.+......+++|||+||+|+.| ..+++.+||.++|+++... ...........+|++.|+.++|+.|++
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred ccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 3466677888899999999999999 8899999999999999211 112223346789999999999999998
Q ss_pred HH
Q 045720 455 YI 456 (745)
Q Consensus 455 ~~ 456 (745)
|+
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 85
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.07 E-value=1.6e-05 Score=72.83 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCcc----ccccccccceEEechhhHHHHHH
Q 045720 384 TFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDS----TLIQRNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 384 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~ 454 (745)
..|.+..+ +.+++|||+|++|+.| ..+++.+||.++|++|+...+.. ...+...+|++.|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35876554 3579999999999999 77899999999999988633221 11124579999999999999999
Q ss_pred HHHcCCCCeE
Q 045720 455 YINSTSSPTA 464 (745)
Q Consensus 455 ~~~~~~~~~~ 464 (745)
.+.++.+.++
T Consensus 111 ~l~~g~~v~~ 120 (122)
T cd02130 111 ALANGGEVSA 120 (122)
T ss_pred HHhcCCcEEE
Confidence 9988776544
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.04 E-value=1.6e-05 Score=73.01 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=62.9
Q ss_pred cCCCCCCC--CCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCc-c-cc----ccccccceEEechhhH
Q 045720 383 TTFCSPET--LKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGD-S-TL----IQRNSLPNVRVSHAVS 449 (745)
Q Consensus 383 ~~~c~~~~--~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~-~-~~----~~~~~~p~~~i~~~~g 449 (745)
...|.+.. +...+++|||+||+|+.| ..+++.+||.|+|++++..... . .. .....+|.+.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 667889999999999988 7778889999999998865321 1 11 1345799999999999
Q ss_pred HHHHHHHHcCCCC
Q 045720 450 ESIKAYINSTSSP 462 (745)
Q Consensus 450 ~~l~~~~~~~~~~ 462 (745)
+.|++++.++.+.
T Consensus 110 ~~l~~~~~~~~~v 122 (126)
T cd00538 110 EALLSLLEAGKTV 122 (126)
T ss_pred HHHHHHHhcCCce
Confidence 9999999875543
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.04 E-value=1.8e-05 Score=72.70 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=61.7
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-----ccc----c---ccccccceEEec
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-----DST----L---IQRNSLPNVRVS 445 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-----~~~----~---~~~~~~p~~~i~ 445 (745)
.+.|.+... +.+++|||+|++||.| ..+++.+||.++|++|+.... ... . .+...||++.|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 367976544 5679999999999999 788999999999999875432 111 0 123579999999
Q ss_pred hhhHHHHHHHHHcCCCCe
Q 045720 446 HAVSESIKAYINSTSSPT 463 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~ 463 (745)
..+|+.|++.+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998765443
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.99 E-value=4.2e-05 Score=70.23 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=61.7
Q ss_pred cCCCCCCCCC--CC----cccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-----------cccccccc
Q 045720 383 TTFCSPETLK--SV----DVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-----------LIQRNSLP 440 (745)
Q Consensus 383 ~~~c~~~~~~--~~----~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-----------~~~~~~~p 440 (745)
.+.|.+.... +. ...++|+|++||.| ..+++.+||.++|++|+....... ..+.-.+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578766553 22 37889999999999 788999999999999986532111 11233699
Q ss_pred eEEechhhHHHHHHHHHcCCCCeE
Q 045720 441 NVRVSHAVSESIKAYINSTSSPTA 464 (745)
Q Consensus 441 ~~~i~~~~g~~l~~~~~~~~~~~~ 464 (745)
++.|+..+|+.|+..+..+...++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999988765443
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.94 E-value=3.7e-05 Score=71.96 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=61.2
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccccc------cccccceEEechhhHHH
Q 045720 383 TTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTLI------QRNSLPNVRVSHAVSES 451 (745)
Q Consensus 383 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~~------~~~~~p~~~i~~~~g~~ 451 (745)
.+.|.+.. .+++|+|+|++||.| ..+++++||.++|++|+......... ....||++.|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 36798754 479999999999999 88899999999999987643211111 13579999999999999
Q ss_pred HHHHHHcCCCCe
Q 045720 452 IKAYINSTSSPT 463 (745)
Q Consensus 452 l~~~~~~~~~~~ 463 (745)
|++.+.++...+
T Consensus 125 L~~~l~~g~~Vt 136 (139)
T cd02132 125 LNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHcCCcEE
Confidence 999998876544
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.81 E-value=7.3e-05 Score=67.59 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=59.3
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCC-ccc-c----ccccccceEEechhhHH
Q 045720 382 TTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFG-DST-L----IQRNSLPNVRVSHAVSE 450 (745)
Q Consensus 382 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~-~~~-~----~~~~~~p~~~i~~~~g~ 450 (745)
..+.|.+. +..+++|||+|++||.| ..+++.+||.++|++|+.... ... . .+...+|++.|+.++|+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679765 55789999999999999 788999999999999876532 111 1 22347999999999999
Q ss_pred HHHHHHHc
Q 045720 451 SIKAYINS 458 (745)
Q Consensus 451 ~l~~~~~~ 458 (745)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988754
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.76 E-value=8.6e-05 Score=68.91 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=53.9
Q ss_pred CCCCcccceEEEEecCCc----------hhhhhhcCceEEEEeecCC-CCc-c-cccc---ccccceEEechhhHHHHHH
Q 045720 391 LKSVDVKGKVVLCQRGAS----------GDDVLNAGGAAMILMNDEL-FGD-S-TLIQ---RNSLPNVRVSHAVSESIKA 454 (745)
Q Consensus 391 ~~~~~~~gkivl~~~~~~----------~~~~~~~ga~~~i~~~~~~-~~~-~-~~~~---~~~~p~~~i~~~~g~~l~~ 454 (745)
+...+++|||+|++|+.| .++++++||.++|+||+.. .+. . ...+ ...+|++.|+.++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445689999999999988 4678889999999999962 221 1 1122 4589999999999999999
Q ss_pred HHHcC
Q 045720 455 YINST 459 (745)
Q Consensus 455 ~~~~~ 459 (745)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88543
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.72 E-value=0.00014 Score=69.28 Aligned_cols=79 Identities=25% Similarity=0.261 Sum_probs=63.0
Q ss_pred cCCCCCCCCCC---CcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc-cc-----cccccceEEechhh
Q 045720 383 TTFCSPETLKS---VDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST-LI-----QRNSLPNVRVSHAV 448 (745)
Q Consensus 383 ~~~c~~~~~~~---~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~-~~-----~~~~~p~~~i~~~~ 448 (745)
.++|.+....+ .+..|+|+|++||.| ..+++.+||.++|++|+....... .. ....||++.|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798776644 789999999999999 888999999999999986532221 11 13479999999999
Q ss_pred HHHHHHHHHcCCC
Q 045720 449 SESIKAYINSTSS 461 (745)
Q Consensus 449 g~~l~~~~~~~~~ 461 (745)
|..|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.40 E-value=0.0011 Score=61.15 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-------hhhhhhcCceEEEEeecCCCCccc-----c-
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-------GDDVLNAGGAAMILMNDELFGDST-----L- 433 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-------~~~~~~~ga~~~i~~~~~~~~~~~-----~- 433 (745)
....+++|.+... +..+...+++|||++++++.+ ..+++.+||.++|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3567888876431 223345679999999999876 678888999999999875442211 1
Q ss_pred -ccccccceEEechhhHHHHHHHHHcCC
Q 045720 434 -IQRNSLPNVRVSHAVSESIKAYINSTS 460 (745)
Q Consensus 434 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 460 (745)
.....+|++.|+.+||..|.+.+..+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998744
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.95 E-value=0.0028 Score=58.92 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred CCCcccceEEEEecCCc------------------hhhhhhcCceEEEEeecCC-------CCcccc-ccccccceEEec
Q 045720 392 KSVDVKGKVVLCQRGAS------------------GDDVLNAGGAAMILMNDEL-------FGDSTL-IQRNSLPNVRVS 445 (745)
Q Consensus 392 ~~~~~~gkivl~~~~~~------------------~~~~~~~ga~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i~ 445 (745)
...+++|||+++.++.| ...++.+||.++|+++... .+.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 45689999999999999 5788899999999998532 222222 223469999999
Q ss_pred hhhHHHHHHHHHcCCCCe
Q 045720 446 HAVSESIKAYINSTSSPT 463 (745)
Q Consensus 446 ~~~g~~l~~~~~~~~~~~ 463 (745)
.+++..|.+.+..+...+
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999998775443
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.73 E-value=0.057 Score=47.43 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=65.1
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEcCceeEEe
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDKYTVKS 738 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~~~v~~ 738 (745)
+...+.+++|+|.|..+..|++.........++++|..-.+.+ |++.+++|+|.+.... +.+.+.|.+.-++..+.+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEE
Confidence 3356778899999999999998765433556788888777888 9999999999965554 467899998877778888
Q ss_pred eEEEEe
Q 045720 739 PIAISF 744 (745)
Q Consensus 739 P~~v~~ 744 (745)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 886653
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.55 E-value=0.16 Score=42.30 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=37.7
Q ss_pred cCEEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEEcCeEE-eccCCcEEEEEEEEEecCCC
Q 045720 660 SPQTYHRTVTNVGKAK-SFYTRQMVAPEGVEITVQPHNIS-FAAKNQKVTYSVTFTRTGNT 718 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~-~ty~~~~~~p~~~~v~v~p~~~~-~~~~~~~~~~~vt~~~~~~~ 718 (745)
...+++++|+|.|... ...+++...|.|-++...|.++. +++ |++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCCC
Confidence 4678999999999765 45888888999988877777764 555 9999999999998763
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.49 E-value=0.75 Score=41.58 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=42.1
Q ss_pred CEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCC
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNT 718 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 718 (745)
...++++|+|.++.+.+|++++..++|+++......+.+.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56889999999999999999999988999966558899988 9999999999988764
No 70
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=94.23 E-value=0.44 Score=43.36 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=56.5
Q ss_pred eeeeecCC-cCEEEEEEEEecCCCceeEEEEEeC----CCC--------------eE------EEEEcCeEEeccCCcEE
Q 045720 652 SFSIKLGY-SPQTYHRTVTNVGKAKSFYTRQMVA----PEG--------------VE------ITVQPHNISFAAKNQKV 706 (745)
Q Consensus 652 s~~~~~~~-~~~~~~~tv~N~g~~~~ty~~~~~~----p~~--------------~~------v~v~p~~~~~~~~~~~~ 706 (745)
.|.+.... ..++++++|+|.++.+.+|.+.+.. ..| +. ++ .|..+++++ ++++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEECC-CCEE
Confidence 45555443 4799999999999999999987641 111 01 11 244588888 9999
Q ss_pred EEEEEEEecCCCCCCeEEEEEEEE
Q 045720 707 TYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 707 ~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+++++|+.+...-.+.+-|.|.++
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999886667888888876
No 71
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=94.00 E-value=0.14 Score=49.74 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=50.3
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCc------------------ccc------------c---
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGD------------------STL------------I--- 434 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~------------------~~~------------~--- 434 (745)
..+++|||+|++++.| ..+++.+||+|+|+|++..... .+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 5689999999999988 7888999999999998842100 000 0
Q ss_pred -cccccceEEechhhHHHHHHHHHc
Q 045720 435 -QRNSLPNVRVSHAVSESIKAYINS 458 (745)
Q Consensus 435 -~~~~~p~~~i~~~~g~~l~~~~~~ 458 (745)
.-..||+.-|+..+++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 123589999999999999998754
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.05 E-value=0.22 Score=46.24 Aligned_cols=59 Identities=24% Similarity=0.301 Sum_probs=44.9
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----------------hhhhhhcCceEEEEeecCCC
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----------------GDDVLNAGGAAMILMNDELF 428 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------~~~~~~~ga~~~i~~~~~~~ 428 (745)
..-+++|.+.... ...|....+...|++|||+|+.++.| .+++..+||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567777765432 24577667778899999999998774 56778899999999998543
No 73
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=91.78 E-value=0.39 Score=44.83 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=44.6
Q ss_pred CCceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----------------------hhhhhhcCceEEEEe
Q 045720 367 SKRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----------------------GDDVLNAGGAAMILM 423 (745)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------------~~~~~~~ga~~~i~~ 423 (745)
....|+||.+..-. ...|....+...|++|||+|+.++.| ...++.+||.++|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888775422 24577778888899999999988754 446777999999999
Q ss_pred ecCC
Q 045720 424 NDEL 427 (745)
Q Consensus 424 ~~~~ 427 (745)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9854
No 74
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.18 E-value=0.5 Score=44.65 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=43.4
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCC------------------c-----hhhhhhcCceEEEEee
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGA------------------S-----GDDVLNAGGAAMILMN 424 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-----~~~~~~~ga~~~i~~~ 424 (745)
..-++||.+.... ...|....+...|++|||+|+.|+. | ..++..+||.++|+++
T Consensus 20 vtg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3567777765421 2446666677889999999998773 2 6677889999999999
Q ss_pred cCCC
Q 045720 425 DELF 428 (745)
Q Consensus 425 ~~~~ 428 (745)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8543
No 75
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.18 E-value=1.1 Score=49.32 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCC------CccccccccccceEEechhhHHHHHHHHHcCCC
Q 045720 393 SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELF------GDSTLIQRNSLPNVRVSHAVSESIKAYINSTSS 461 (745)
Q Consensus 393 ~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 461 (745)
...+++|++++.||.| ...++.+||.++++.|+..+ ++......-.||++.+..+++..+.....++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4568999999999999 77888999999999998432 222333456899999999999999886666655
Q ss_pred CeEEEE
Q 045720 462 PTAALV 467 (745)
Q Consensus 462 ~~~~i~ 467 (745)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 554443
No 76
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=88.59 E-value=4.8 Score=36.47 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=49.1
Q ss_pred CcCEEEEEEEEecCCCceeEEEEEeC---CC----CeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQMVA---PE----GVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~~~---p~----~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
.+..+.+++|+|.++.+..+.+.+.. .. .-.+-++|..+.+.+ |+++++.| +.....+.+....=+|.+.
T Consensus 13 ~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 13 ESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp TTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 34567789999999988888877764 11 125779999999999 99999999 6644433333333456665
No 77
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=87.65 E-value=0.75 Score=46.34 Aligned_cols=52 Identities=33% Similarity=0.512 Sum_probs=39.4
Q ss_pred CceeEEecCCCCCCCcCCCCCCCC-----CCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETL-----KSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL 427 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~ 427 (745)
..-+++|.+. |....+ ...+++|||+|++++.+ ..+++.+||+|+|++++..
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4567777664 333322 25689999999999877 7788899999999999853
No 78
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=86.25 E-value=0.83 Score=42.79 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.0
Q ss_pred CcccceEEEEecCCc-----hhhhhhcCceEEEEeecCC
Q 045720 394 VDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDEL 427 (745)
Q Consensus 394 ~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~ 427 (745)
-+++|||+|++.|.. +++++..||+|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999998776 8899999999999998843
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.21 E-value=6.9 Score=43.18 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=57.8
Q ss_pred CcCEEEEEEEEecCCCcee-EEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 659 YSPQTYHRTVTNVGKAKSF-YTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~t-y~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+..++....+.|.|+.+.| -++++..|.|-++.|+|.++---++|++.++++|++++.....+-++=+|+-+
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 3478889999999998754 67899999999999999876544559999999999999876545555556655
No 80
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=84.25 E-value=1.5 Score=40.70 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=68.4
Q ss_pred ceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccc----------c
Q 045720 369 RLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDST----------L 433 (745)
Q Consensus 369 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~----------~ 433 (745)
.++++.... ..+|... .+.-+..|.+++++||+| ..+++.+||..+|+.++....... .
T Consensus 65 ~~~lV~adP-----p~aC~el-rN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 65 NLELVLADP-----PHACEEL-RNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred CcceeecCC-----hhHHHHH-hhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 455555443 4557543 344568899999999999 678889999999987664433221 1
Q ss_pred ccccccceEEechhhHHHHHHHHHcCCCCeEEEEecc
Q 045720 434 IQRNSLPNVRVSHAVSESIKAYINSTSSPTAALVMKG 470 (745)
Q Consensus 434 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 470 (745)
-+...+|.+.+-..+|.-++.-+.....+.+.|..+.
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 2356899999999999888888877777777766554
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=79.78 E-value=7 Score=43.73 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=48.9
Q ss_pred CEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
...+++.|.|.++.+.+|++++...++.++......+++++ |++.++.|.+..+..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEechh
Confidence 56888999999999999999999988988887655789988 999999999988754
No 82
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=78.82 E-value=13 Score=32.64 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=41.7
Q ss_pred CEEEEEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
..+.+++|+|.++...-|++....|... .|.|..-.+.+ ++++++.|++.....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPFDF 72 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SSST
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEeccc
Confidence 4788899999999999999998888765 46799888888 999999999987443
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=74.00 E-value=32 Score=31.97 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=51.7
Q ss_pred CEEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEE
Q 045720 661 PQTYHRTVTNVGKAK-SFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWV 730 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~-~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~ 730 (745)
+..+.+.|-|..+.. +--+++...-.++++--.|..+++.| ++.++++.+|....... +++||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStet-GvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTET-GVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccC-CEEEEEEEEe
Confidence 455556666665542 33455555567788888899999998 99999999999888776 8999999985
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.96 E-value=38 Score=37.64 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=50.6
Q ss_pred CEEEEEEEEecCCCceeEEEEEe-CCCCeEEEEE-----cCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEc
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMV-APEGVEITVQ-----PHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVS 731 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~-~p~~~~v~v~-----p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~ 731 (745)
+..|++++.|.|..+.+|.++.. .|.|-...+. -.++.+.+ ||+++|+|.+.++....-+.|.=.|+-++
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67889999999999999999998 6876554432 24577778 99999999999877533233333344443
No 85
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.05 E-value=10 Score=40.63 Aligned_cols=74 Identities=24% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCCCCCC---CCcccceEEEEecCCc-----hhhhhhcCceEEEEeecCCCCccccc----cccccceEEechhhHHH
Q 045720 384 TFCSPETLK---SVDVKGKVVLCQRGAS-----GDDVLNAGGAAMILMNDELFGDSTLI----QRNSLPNVRVSHAVSES 451 (745)
Q Consensus 384 ~~c~~~~~~---~~~~~gkivl~~~~~~-----~~~~~~~ga~~~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 451 (745)
++|.+.... .......++++.|++| +.+++.+|..++|++|+......... ..-.++.+.++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 567665442 3456678999999999 88999999999999998766544333 24568889999999999
Q ss_pred HHHHHH
Q 045720 452 IKAYIN 457 (745)
Q Consensus 452 l~~~~~ 457 (745)
|..|..
T Consensus 143 l~~~~~ 148 (348)
T KOG4628|consen 143 LSSYAG 148 (348)
T ss_pred HHHhhc
Confidence 888743
No 86
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=65.26 E-value=26 Score=33.40 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=37.4
Q ss_pred CceeEEecCCCCCCCcCCCCCCCCCCCcccceEEEEecCCc------------------------hhhhhhcCceEEEEe
Q 045720 368 KRLPLVYPDARNHSTTTFCSPETLKSVDVKGKVVLCQRGAS------------------------GDDVLNAGGAAMILM 423 (745)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~------------------------~~~~~~~ga~~~i~~ 423 (745)
...|+||.+..-.... -.-..+...|++|||+++.++.. ...+...||.|+|++
T Consensus 22 ~~~elVFvGyGi~ape--~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPE--YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcc--cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 4567777665422110 01124567799999999985432 556778999999999
Q ss_pred ecC
Q 045720 424 NDE 426 (745)
Q Consensus 424 ~~~ 426 (745)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 764
No 87
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=63.67 E-value=45 Score=29.27 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=38.4
Q ss_pred CcCEEEEEEEEecCCCc-eeEEE-----EEeCCCCe---EEEEEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 659 YSPQTYHRTVTNVGKAK-SFYTR-----QMVAPEGV---EITVQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~-~ty~~-----~~~~p~~~---~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
+.+.++.++++|..+.. .+-++ .+.. .|+ .+......+++.| +++.+++++|....-
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCC-CCEEEEEEEEEceeE
Confidence 44788999999999887 55332 2333 355 3566677788888 999999999987665
No 88
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=59.19 E-value=36 Score=28.88 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred eeeecCCcCEEEEEEEEecCCCceeEEEEEeC-CCCeEEEEEcCeEEeccCCcEEEEEEEE
Q 045720 653 FSIKLGYSPQTYHRTVTNVGKAKSFYTRQMVA-PEGVEITVQPHNISFAAKNQKVTYSVTF 712 (745)
Q Consensus 653 ~~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~~-p~~~~v~v~p~~~~~~~~~~~~~~~vt~ 712 (745)
+.+........++++++|.|....++++.... ..+ .|.++++.+ |+++++.+.+
T Consensus 11 v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~~~-----~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 11 VTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYGGG-----GPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred EEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcCCC-----CCEEEEECC-CCEEEEEEee
Confidence 34444344558889999999998888887622 112 345567777 8887766655
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=58.55 E-value=86 Score=26.52 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=33.1
Q ss_pred CcCEEEEEEEEecCCCc-eeEEEEEeCCCCeEEEEEcCe-EEeccCCcEEEEEEEEEec
Q 045720 659 YSPQTYHRTVTNVGKAK-SFYTRQMVAPEGVEITVQPHN-ISFAAKNQKVTYSVTFTRT 715 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~-~ty~~~~~~p~~~~v~v~p~~-~~~~~~~~~~~~~vt~~~~ 715 (745)
+...+++.+|+|.|... ..+.+.+... |..+ .-.. -.+.+ |+++++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCC-CcEEEEEEEEEeC
Confidence 44789999999999874 5566665432 3333 1112 25666 9999999998887
No 90
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=55.45 E-value=38 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=30.2
Q ss_pred EEEEEcCeEEeccCCcEEEEEEEEEecCCCCCCeEEEEEEEEcCc
Q 045720 689 EITVQPHNISFAAKNQKVTYSVTFTRTGNTNASSAQAYLSWVSDK 733 (745)
Q Consensus 689 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~~~~~~~~ 733 (745)
.|++.|..+++.. |+++.|++++...... . ...+.|++..
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSAK---V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCCC---c-cceEEEEECC
Confidence 5788999999987 9999999997644432 2 5778898543
No 91
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=53.48 E-value=28 Score=42.22 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=36.0
Q ss_pred cCEEEEEEEEecCCCceeEEEEE--eCCCCeEEE------EEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 660 SPQTYHRTVTNVGKAKSFYTRQM--VAPEGVEIT------VQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~~ty~~~~--~~p~~~~v~------v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
+..+++++|||+|+....-.+++ ..|.+. +. .--.++.+++ ||+++++++|...+.
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~~P~k~L~gF~Kv~L~p-Ges~~V~~~l~~~~L 730 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MSRPVKELKGFEKIMLKP-GETQTVSFPIDIEAL 730 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CCCHHHhccCceeEeECC-CCeEEEEEeecHHHh
Confidence 35789999999999765544442 333221 11 1123456767 999999999987654
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=48.52 E-value=50 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=25.9
Q ss_pred EEEEEecCCCceeEEEEEeCCCCeEEEEEcCeEEeccCCcEEEEEEEE
Q 045720 665 HRTVTNVGKAKSFYTRQMVAPEGVEITVQPHNISFAAKNQKVTYSVTF 712 (745)
Q Consensus 665 ~~tv~N~g~~~~ty~~~~~~p~~~~v~v~p~~~~~~~~~~~~~~~vt~ 712 (745)
+++++|.|+.+..-.-. ...=| =.+++...-.+.| ||+..++|++
T Consensus 1 ~F~~~N~g~~~L~I~~v-~tsCg-Ct~~~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITDV-QTSCG-CTTAEYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred CEEEEECCCCcEEEEEe-eEccC-CEEeeCCcceECC-CCEEEEEEEC
Confidence 37899999876544321 11111 2223333344666 9999988874
No 93
>PLN03080 Probable beta-xylosidase; Provisional
Probab=48.23 E-value=38 Score=41.15 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=44.8
Q ss_pred CEEEEEEEEecCCCceeEEEEE--eCCCC-----eEEEEEcCeEEeccCCcEEEEEEEEEe-cCCC----CCC--eEEEE
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQM--VAPEG-----VEITVQPHNISFAAKNQKVTYSVTFTR-TGNT----NAS--SAQAY 726 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~--~~p~~-----~~v~v~p~~~~~~~~~~~~~~~vt~~~-~~~~----~~~--~~~G~ 726 (745)
..+++++|||.|+....-.+.+ ..|.. .+--+--.++.+.+ ||++++++++.. .... .+. ...|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS-GRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC-CCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 4789999999999876655542 23321 11111233456666 999999999976 4331 112 22454
Q ss_pred EEEE--cCceeEEee
Q 045720 727 LSWV--SDKYTVKSP 739 (745)
Q Consensus 727 ~~~~--~~~~~v~~P 739 (745)
..+. +..|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 4433 456666654
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.32 E-value=67 Score=26.95 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=25.7
Q ss_pred EEEEEEEEecCCCcee--------EEEEEeCCCCeEE---------EEEcCeEEeccCCcEEEEEEEEEecCC
Q 045720 662 QTYHRTVTNVGKAKSF--------YTRQMVAPEGVEI---------TVQPHNISFAAKNQKVTYSVTFTRTGN 717 (745)
Q Consensus 662 ~~~~~tv~N~g~~~~t--------y~~~~~~p~~~~v---------~v~p~~~~~~~~~~~~~~~vt~~~~~~ 717 (745)
..++++|+|.++.+.+ |-+.+.-+.|-.| +---...++.| ||+++|+.++.....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~p-Ge~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEP-GESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-T-T-EEEEEEEESS---
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECC-CCEEEEEEEECCCCC
Confidence 3566777777775443 3333332333222 22233467777 999999988876654
No 95
>PRK13203 ureB urease subunit beta; Reviewed
Probab=43.71 E-value=74 Score=27.75 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=13.6
Q ss_pred CcCEEEEEEEEecCCCc
Q 045720 659 YSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 17 ~gr~~~~l~V~NtGDRP 33 (102)
T PRK13203 17 AGRETVTLTVANTGDRP 33 (102)
T ss_pred CCCCEEEEEEEeCCCCc
Confidence 34567889999999975
No 96
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=42.22 E-value=78 Score=27.58 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.6
Q ss_pred CcCEEEEEEEEecCCCc
Q 045720 659 YSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 17 ~gr~~~~l~V~NtGDRp 33 (101)
T cd00407 17 AGREAVTLKVKNTGDRP 33 (101)
T ss_pred CCCCEEEEEEEeCCCcc
Confidence 34668889999999975
No 97
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=39.62 E-value=96 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=13.5
Q ss_pred CcCEEEEEEEEecCCCc
Q 045720 659 YSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 17 ~gr~~~~l~V~NtGDRP 33 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRP 33 (101)
T ss_pred CCCcEEEEEEEeCCCcc
Confidence 34567889999999975
No 98
>PRK13202 ureB urease subunit beta; Reviewed
Probab=36.75 E-value=1.2e+02 Score=26.48 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=12.2
Q ss_pred EEEEEEEEecCCCc
Q 045720 662 QTYHRTVTNVGKAK 675 (745)
Q Consensus 662 ~~~~~tv~N~g~~~ 675 (745)
.+++++|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 67889999999975
No 99
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=36.72 E-value=1.9e+02 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=13.4
Q ss_pred cCCcCEEEEEEEEecCCCc
Q 045720 657 LGYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 657 ~~~~~~~~~~tv~N~g~~~ 675 (745)
...+..+.+++|+|.|+.+
T Consensus 14 lN~gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 14 LNAGRERITLEVTNTGDRP 32 (100)
T ss_dssp TTTTSEEEEEEEEE-SSS-
T ss_pred ecCCCcEEEEEEEeCCCcc
Confidence 3345678899999999975
No 100
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=36.23 E-value=1.8e+02 Score=29.80 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=39.3
Q ss_pred CEEEEEEEEecCCCceeEEEEEe---CC---C----------CeEEEEEcCeEEeccCCcEEEEEEEEEec
Q 045720 661 PQTYHRTVTNVGKAKSFYTRQMV---AP---E----------GVEITVQPHNISFAAKNQKVTYSVTFTRT 715 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~~~~~---~p---~----------~~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 715 (745)
.....++|.|.|+....+.+.+. .| . .-.+-++|..+.+++ |+++.+.|.-...
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~p-g~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPA-GTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECC-CCeEEEEEEEcCC
Confidence 45567899999998888877653 22 1 125678999999998 9999877665543
No 101
>PRK13205 ureB urease subunit beta; Reviewed
Probab=33.96 E-value=1.1e+02 Score=28.52 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=14.2
Q ss_pred CCcCEEEEEEEEecCCCc
Q 045720 658 GYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 658 ~~~~~~~~~tv~N~g~~~ 675 (745)
..+..+++++|+|.|+.+
T Consensus 16 N~GR~~i~L~V~NtGDRP 33 (162)
T PRK13205 16 NVGREAKTIEIINTGDRP 33 (162)
T ss_pred CCCCcEEEEEEEeCCCCc
Confidence 345678889999999975
No 102
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=33.61 E-value=1.7e+02 Score=31.14 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=14.8
Q ss_pred EEEEEEEEecCCCceeEEEEEeCC
Q 045720 662 QTYHRTVTNVGKAKSFYTRQMVAP 685 (745)
Q Consensus 662 ~~~~~tv~N~g~~~~ty~~~~~~p 685 (745)
..+++||+|..+.+.+-.+....|
T Consensus 244 ~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEECCCCCCEEEEEEeCCC
Confidence 455667777776666555555544
No 103
>PRK13201 ureB urease subunit beta; Reviewed
Probab=33.51 E-value=1.2e+02 Score=27.73 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=13.5
Q ss_pred CcCEEEEEEEEecCCCc
Q 045720 659 YSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~ 675 (745)
.+..+.+++|+|.|+.+
T Consensus 17 ~gr~~~~l~V~NtGDRP 33 (136)
T PRK13201 17 NHHPETVIEVENTGDRP 33 (136)
T ss_pred CCCCEEEEEEEeCCCcc
Confidence 34567889999999975
No 104
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=32.03 E-value=1e+02 Score=24.96 Aligned_cols=32 Identities=31% Similarity=0.326 Sum_probs=22.7
Q ss_pred CcCEEEEEEEEecCCCcee-EEEEEeCCCCeEE
Q 045720 659 YSPQTYHRTVTNVGKAKSF-YTRQMVAPEGVEI 690 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~t-y~~~~~~p~~~~v 690 (745)
++..+++++|+|.|..... ..+.-..|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 4478999999999987643 5555556666644
No 105
>PRK13198 ureB urease subunit beta; Reviewed
Probab=31.49 E-value=2.4e+02 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=15.3
Q ss_pred ecCCcCEEEEEEEEecCCCc
Q 045720 656 KLGYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 656 ~~~~~~~~~~~tv~N~g~~~ 675 (745)
....+..+.+++|+|.|+.+
T Consensus 42 ~lN~gr~~~~l~V~NtGDRP 61 (158)
T PRK13198 42 TFNENKPVTKVKVRNTGDRP 61 (158)
T ss_pred EeCCCCcEEEEEEEeCCCCc
Confidence 34445678889999999975
No 106
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=31.36 E-value=22 Score=16.10 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=4.1
Q ss_pred cccCCC
Q 045720 483 AFSGRG 488 (745)
Q Consensus 483 ~fSs~G 488 (745)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 107
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=31.35 E-value=3.9e+02 Score=27.14 Aligned_cols=55 Identities=13% Similarity=-0.011 Sum_probs=38.8
Q ss_pred cCCcCEEEEEEEEecCCCceeEEEEE--eCC---CCeEEEEEcCeEEeccCCcEEEEEEEEEe
Q 045720 657 LGYSPQTYHRTVTNVGKAKSFYTRQM--VAP---EGVEITVQPHNISFAAKNQKVTYSVTFTR 714 (745)
Q Consensus 657 ~~~~~~~~~~tv~N~g~~~~ty~~~~--~~p---~~~~v~v~p~~~~~~~~~~~~~~~vt~~~ 714 (745)
+.++....+++|+|.++. .|.+.. ... ....+-|+|..+.+.+ |+++.+.|....
T Consensus 35 ~~~~~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl~p-g~~q~vRii~~~ 94 (230)
T PRK09918 35 VEESDGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARVEP-GQSQQVRFILKS 94 (230)
T ss_pred EECCCCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 344567788999999975 455443 221 1235778999999998 999998877654
No 108
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.19 E-value=42 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHhhCCCCCHHHHHHHhhccc
Q 045720 544 ALLKSAHPNWSHAAIKSAMMTTA 566 (745)
Q Consensus 544 ALl~q~~p~ls~~~vk~~L~~TA 566 (745)
--+++.||++++..|+..|...-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcC
Confidence 45789999999999999996653
No 109
>PRK13204 ureB urease subunit beta; Reviewed
Probab=29.99 E-value=1.4e+02 Score=27.97 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.1
Q ss_pred ecCCcCEEEEEEEEecCCCc
Q 045720 656 KLGYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 656 ~~~~~~~~~~~tv~N~g~~~ 675 (745)
....+..+++++|+|.|+.+
T Consensus 37 ~lN~gr~~~~l~V~NtGDRP 56 (159)
T PRK13204 37 EINQGRPRTTLTVRNTGDRP 56 (159)
T ss_pred EeCCCCcEEEEEEEeCCCCc
Confidence 33445678889999999975
No 110
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=29.35 E-value=4.3e+02 Score=23.98 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=45.6
Q ss_pred cCEEEEEEEEecCCCceeEE----EEEeCCCCe----EEEE---EcCeEEeccCCcEEEEEEEEEecCCCCC--CeEEEE
Q 045720 660 SPQTYHRTVTNVGKAKSFYT----RQMVAPEGV----EITV---QPHNISFAAKNQKVTYSVTFTRTGNTNA--SSAQAY 726 (745)
Q Consensus 660 ~~~~~~~tv~N~g~~~~ty~----~~~~~p~~~----~v~v---~p~~~~~~~~~~~~~~~vt~~~~~~~~~--~~~~G~ 726 (745)
+...+.+++||.|...=+.. +......|. ...- .+..+++.+ |++..+.|+........+ ....-.
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~P-G~sA~a~l~~~~~~~~~~~~~~~~~~ 96 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAP-GGSAYAGLRWSNVGSGGGCKPVTPAG 96 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECC-CCEEEEEEEEecCCCCCCcCccccCE
Confidence 35688899999987632211 111111222 1111 355688888 999999999988665443 222223
Q ss_pred EEEE--cCceeEEeeE
Q 045720 727 LSWV--SDKYTVKSPI 740 (745)
Q Consensus 727 ~~~~--~~~~~v~~P~ 740 (745)
|+.. ++...+.+|+
T Consensus 97 l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 97 LTVTPPGGTAPVTVPW 112 (131)
T ss_pred EEEECCCCCccEEEeC
Confidence 4444 5666666654
No 111
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=26.72 E-value=3.4e+02 Score=23.86 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=28.8
Q ss_pred CEEEEEEEEecCCCceeEE---EEEeCCCCeEEEEEc---------CeEEeccCCcEEEEEEEEEecCCCC
Q 045720 661 PQTYHRTVTNVGKAKSFYT---RQMVAPEGVEITVQP---------HNISFAAKNQKVTYSVTFTRTGNTN 719 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~~ty~---~~~~~p~~~~v~v~p---------~~~~~~~~~~~~~~~vt~~~~~~~~ 719 (745)
-..++++|+|.++.+..+. ..+.-..|-...... ..-++.+ |++.+..+-|..+....
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~p-G~~~~g~l~F~vp~~~~ 106 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKP-GESVTGKLVFEVPKDDK 106 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-T-T-EEEEEEEEEESTT-G
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECC-CCEEEEEEEEEECCCCc
Confidence 4778899999998766543 222222322222111 2245556 77888778777776643
No 112
>PRK15019 CsdA-binding activator; Provisional
Probab=26.19 E-value=62 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=27.9
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKS 560 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 560 (745)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4444565 68999999999999999999999876
No 113
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.12 E-value=60 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=28.6
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~ 561 (745)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 589999999999999999999998754
No 114
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=24.98 E-value=2e+02 Score=21.81 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CcCEEEEEEEEecCCCcee-EEEEEeCCCCeEE
Q 045720 659 YSPQTYHRTVTNVGKAKSF-YTRQMVAPEGVEI 690 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~t-y~~~~~~p~~~~v 690 (745)
+...+++++++|.|....+ ..+.-..|.|+..
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 3468999999999987654 3444445666543
No 115
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=24.78 E-value=7.3e+02 Score=25.20 Aligned_cols=63 Identities=6% Similarity=0.165 Sum_probs=41.2
Q ss_pred ecCCcCEEEEEEEEecCCCceeEEEE--EeCCCC---eEEEEEcCeEEeccCCcEEEEEEEEEecCCCCC
Q 045720 656 KLGYSPQTYHRTVTNVGKAKSFYTRQ--MVAPEG---VEITVQPHNISFAAKNQKVTYSVTFTRTGNTNA 720 (745)
Q Consensus 656 ~~~~~~~~~~~tv~N~g~~~~ty~~~--~~~p~~---~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~ 720 (745)
-+..+....+++|+|.++.. .|-+. ++..++ ..+-++|.-+.+.+ ++++++.|.......+.+
T Consensus 37 Iy~~~~~~~sv~i~N~~~~~-p~LvQsWv~~~~~~~~~pFivtPPlfrl~~-~~~~~lRI~~~~~~lP~D 104 (228)
T PRK15188 37 IYPQGSKQTSLPIINSSASN-VFLIQSWVANADGSRSTDFIITPPLFVIQP-KKENILRIMYVGPSLPTD 104 (228)
T ss_pred EEcCCCceEEEEEEeCCCCc-cEEEEEEEecCCCCccCCEEEcCCeEEECC-CCceEEEEEECCCCCCCC
Confidence 34445678889999998542 23322 222222 24778999999988 999998888775444443
No 116
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=24.62 E-value=2.1e+02 Score=24.87 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=13.3
Q ss_pred CCcCEEEEEEEEecCCCc
Q 045720 658 GYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 658 ~~~~~~~~~tv~N~g~~~ 675 (745)
..+..+.+.+|.|.|+.+
T Consensus 16 N~gr~~~~i~V~NtGDRP 33 (106)
T COG0832 16 NAGRPTVTIEVANTGDRP 33 (106)
T ss_pred eCCCcceEEEEeecCCCc
Confidence 334567778899999975
No 117
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.57 E-value=55 Score=22.24 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 045720 534 MACPHLSGVAALL 546 (745)
Q Consensus 534 mAaP~VAG~aALl 546 (745)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 118
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=23.55 E-value=71 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=27.9
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKS 560 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 560 (745)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444566 68999999999999999999999875
No 119
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=23.09 E-value=4.7e+02 Score=23.78 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=11.6
Q ss_pred CEEEEEEEEecCCCc
Q 045720 661 PQTYHRTVTNVGKAK 675 (745)
Q Consensus 661 ~~~~~~tv~N~g~~~ 675 (745)
.--+-++|+|.|...
T Consensus 50 qyyVpF~V~N~gg~T 64 (122)
T TIGR02588 50 QYYVPFAIHNLGGTT 64 (122)
T ss_pred EEEEEEEEEeCCCcE
Confidence 456779999999863
No 120
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=21.66 E-value=8.5e+02 Score=24.76 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=42.0
Q ss_pred cCCcCEEEEEEEEecCCCceeEEEEEe--C-CC-C--eEEEEEcCeEEeccCCcEEEEEEEEEecCCCCC
Q 045720 657 LGYSPQTYHRTVTNVGKAKSFYTRQMV--A-PE-G--VEITVQPHNISFAAKNQKVTYSVTFTRTGNTNA 720 (745)
Q Consensus 657 ~~~~~~~~~~tv~N~g~~~~ty~~~~~--~-p~-~--~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~ 720 (745)
+..++...+++|+|.++. .|.++.. . .. + .-+-|+|.-+.+.+ ++++++.|.......+.+
T Consensus 33 y~~~~~~~si~i~N~~~~--p~LvQswv~~~~~~~~~~pFivtPPlfrl~p-~~~q~lRI~~~~~~LP~D 99 (229)
T PRK15211 33 YDEGRKNISFEVTNQADQ--TYGGQVWIDNTTQGSSTVYMVPAPPFFKVRP-KEKQIIRIMKTDSALPKD 99 (229)
T ss_pred EcCCCceEEEEEEeCCCC--cEEEEEEEecCCCCCccCCEEEcCCeEEECC-CCceEEEEEECCCCCCCC
Confidence 334567788999999976 4665532 1 11 1 34778999999998 999998888765444443
No 121
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=21.39 E-value=7e+02 Score=25.58 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=42.0
Q ss_pred ecCCcCEEEEEEEEecCCCceeEEEEE--eC------CCC--eEEEEEcCeEEeccCCcEEEEEEEEEec-CCCCC
Q 045720 656 KLGYSPQTYHRTVTNVGKAKSFYTRQM--VA------PEG--VEITVQPHNISFAAKNQKVTYSVTFTRT-GNTNA 720 (745)
Q Consensus 656 ~~~~~~~~~~~tv~N~g~~~~ty~~~~--~~------p~~--~~v~v~p~~~~~~~~~~~~~~~vt~~~~-~~~~~ 720 (745)
.+..++...+++|+|.++.+ |.++. .. |.. .-+-|+|.-+.+.+ ++++.+.|..... ..+.+
T Consensus 35 I~~~~~~~~sv~l~N~~~~p--~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p-~~~q~lRIi~~~~~~lP~D 107 (246)
T PRK09926 35 IYKSDQKDVNVRLENKGNNP--LLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDP-KRGQTIKLMYTASTALPKD 107 (246)
T ss_pred EEeCCCceEEEEEEeCCCCc--EEEEEEecCCCCccCccccCCCEEEcCCeEEECC-CCccEEEEEeCCCCCCCCC
Confidence 34455678889999999764 55442 21 111 24778999999998 9999998887654 34443
No 122
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=79 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.153 Sum_probs=26.3
Q ss_pred eeecCCcchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 045720 527 DIVSGTSMACPHLSGVAALLKSAHPNWSHAAIKS 560 (745)
Q Consensus 527 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 560 (745)
..+.|=|= |++|.|.+|++.+.+-..||++|.+
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 33444443 6899999999999999999998864
No 123
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=21.17 E-value=3.4e+02 Score=26.93 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=15.7
Q ss_pred eecCCcCEEEEEEEEecCCCc
Q 045720 655 IKLGYSPQTYHRTVTNVGKAK 675 (745)
Q Consensus 655 ~~~~~~~~~~~~tv~N~g~~~ 675 (745)
+....+..+.+++|+|.|+.+
T Consensus 122 I~lN~gr~~~~l~V~NtGDRP 142 (208)
T PRK13192 122 IELNAGRPAVTLDVTNTGDRP 142 (208)
T ss_pred eeeCCCCCEEEEEEEeCCCCc
Confidence 334445678889999999975
No 124
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.92 E-value=7.8e+02 Score=24.87 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=40.9
Q ss_pred ecCCcCEEEEEEEEecCCCceeEEEEE--eCC------CCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCC
Q 045720 656 KLGYSPQTYHRTVTNVGKAKSFYTRQM--VAP------EGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTN 719 (745)
Q Consensus 656 ~~~~~~~~~~~tv~N~g~~~~ty~~~~--~~p------~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~ 719 (745)
.+..+....+++|+|.++. .|.++. +.. ....+-++|..+.+.+ |+++.+.|.......+.
T Consensus 32 i~~~~~~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p-~~~q~lRI~~~~~~lP~ 100 (227)
T PRK15299 32 IFHGDAKDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNG-GQKNVLRIIRTGGNLPE 100 (227)
T ss_pred EEeCCCcEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECC-CCccEEEEEECCCCCCC
Confidence 3444567888999998865 455542 111 1234778999999998 99999887766443444
No 125
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=20.79 E-value=8.8e+02 Score=24.52 Aligned_cols=62 Identities=13% Similarity=0.031 Sum_probs=42.0
Q ss_pred eecCCcCEEEEEEEEecCCCceeEEEEE--eCCC-----CeEEEEEcCeEEeccCCcEEEEEEEEEecCCCC
Q 045720 655 IKLGYSPQTYHRTVTNVGKAKSFYTRQM--VAPE-----GVEITVQPHNISFAAKNQKVTYSVTFTRTGNTN 719 (745)
Q Consensus 655 ~~~~~~~~~~~~tv~N~g~~~~ty~~~~--~~p~-----~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~ 719 (745)
+.+..+....+++|+|.++. .|-+.. +... ...+-|+|..+.+.+ |+++.+.|.......+.
T Consensus 28 vI~~~~~~~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p-~~~q~lRI~~~~~~LP~ 96 (226)
T PRK15295 28 LVFDGNNDESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDA-GQKNSIRVIRSGAPLPA 96 (226)
T ss_pred EEEeCCCceeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECC-CCceEEEEEECCCCCCC
Confidence 34445567888999999875 465542 2111 234778999999998 99999888776443333
No 126
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.75 E-value=78 Score=24.32 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred ceeeecCCcchhHHHHHHHH------HHHhhCCCCCHHHHHHHhh
Q 045720 525 TFDIVSGTSMACPHLSGVAA------LLKSAHPNWSHAAIKSAMM 563 (745)
Q Consensus 525 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~ls~~~vk~~L~ 563 (745)
+--.+.||=+..=.|....+ -+.+.||.++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44556677766655555432 2456799999999999884
No 127
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.60 E-value=91 Score=28.48 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=26.3
Q ss_pred eecCCcchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 045720 528 IVSGTSMACPHLSGVAALLKSAHPNWSHAAIKSA 561 (745)
Q Consensus 528 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~ 561 (745)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 128
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=20.46 E-value=4.9e+02 Score=23.06 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=34.9
Q ss_pred eeec-CCceEEEEEeeCCCCCCChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045720 239 VGMA-PLAHLAVYKVCNPNVYCPESAVIAGIDAAIEDGVDVLSLSFGLG 286 (745)
Q Consensus 239 ~GvA-P~A~l~~~kv~~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (745)
.+.. ++++|+.+ +. ++|+....++.-+++..+.|+++|-+|-...
T Consensus 31 ~~y~~~~~elvgf--~~-CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FT-CGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEEE--ee-CCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 4444 46777775 34 6688888999999999999999999987754
No 129
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.10 E-value=9e+02 Score=24.90 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=40.8
Q ss_pred CcCEEEEEEEEecCCCceeEEEEE--eCC---CCeEEEEEcCeEEeccCCcEEEEEEEEEecCCCCC
Q 045720 659 YSPQTYHRTVTNVGKAKSFYTRQM--VAP---EGVEITVQPHNISFAAKNQKVTYSVTFTRTGNTNA 720 (745)
Q Consensus 659 ~~~~~~~~tv~N~g~~~~ty~~~~--~~p---~~~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~ 720 (745)
++....+++|+|.++. .|-++. ... ...-+-|+|.-+.+.+ ++.+++.|.......+.+
T Consensus 53 ~~~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRLep-~~~~~lRIi~~~~~LP~D 116 (246)
T PRK15233 53 EDAPSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKVES-NARTRLKVIPTSNLFNKN 116 (246)
T ss_pred CCCcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEECC-CCceEEEEEECCCCCCcC
Confidence 3467788999997654 466553 211 1234778999999999 999999888875545543
No 130
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=20.07 E-value=4.8e+02 Score=26.48 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=41.4
Q ss_pred cCCcCEEEEEEEEecCCCceeEEEEE--eCCC------C--eEEEEEcCeEEeccCCcEEEEEEEEEecCCCC
Q 045720 657 LGYSPQTYHRTVTNVGKAKSFYTRQM--VAPE------G--VEITVQPHNISFAAKNQKVTYSVTFTRTGNTN 719 (745)
Q Consensus 657 ~~~~~~~~~~tv~N~g~~~~ty~~~~--~~p~------~--~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~ 719 (745)
+.++....+++|+|.++. .|-++. ...+ . .-+-|+|.-+.+.+ ++.+++.|.......+.
T Consensus 29 y~~~~~~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p-~~~~~lRI~~~~~~LP~ 98 (226)
T PRK15218 29 YPAQKKDITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAA-NSGQQLKIKKLANNLPG 98 (226)
T ss_pred EcCCCcEEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECC-CCceEEEEEECCCCCCc
Confidence 334567788999999875 466543 2111 1 24778999999998 99999888876544444
No 131
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=20.06 E-value=1e+02 Score=33.64 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=42.6
Q ss_pred CCeeecccCCCCCCCCCCCccceeeeCCccEEeeccCCCCCCCCccccee-eecCCcchhHHHHHHHHHH
Q 045720 478 APQVVAFSGRGPSRISPGILKPDIIGPGLNIIAAWKTTVDPLANRVYTFD-IVSGTSMACPHLSGVAALL 546 (745)
Q Consensus 478 ~~~~a~fSs~Gp~~~~~g~~KPDi~APG~~I~sa~~~~~~~~~~~~~~y~-~~sGTSmAaP~VAG~aALl 546 (745)
.+.......-||+. -.-||+.+||+...|+.+.+.-. .-. ..+=|=.|+|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~G------RqG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEG------RQGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCc------cCCCCCCeEEecCHHHHHHHHhh
Confidence 45566667778887 36789999999999999886431 111 1223668999999999974
Done!