BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045721
MSGASLAVPRNEKDKTTTTDQNPPPNARQQQAVGGDVMGSLRVIELQLVAFITVFSASGL
VPLLDLIFPAFASAYLIALSRLAFPAHGNSSSGSQELFRGGKFFRFYVVVGTTIGLFLPL
AYVLGGFARGDEDAVRCTTPHLFLLSFQILTENVISGLSMFSSPVRALVPLLYTVKRLFL
IIDWINDAWFNKTLPANAEVKDTAWYWFGRVLAVANLAYFASNLFCFLIPLFLPRAFERY
FKERDEIQGKMAEDKRSAAASKSESKPMDKKAD

High Scoring Gene Products

Symbol, full name Information P value
AT1G27990 protein from Arabidopsis thaliana 6.0e-87
AT5G52420 protein from Arabidopsis thaliana 1.1e-32
AT5G23920 protein from Arabidopsis thaliana 1.8e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045721
        (273 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010419 - symbol:AT1G27990 "AT1G27990" species...   869  6.0e-87   1
TAIR|locus:2156702 - symbol:AT5G52420 "AT5G52420" species...   357  1.1e-32   1
TAIR|locus:2172878 - symbol:AT5G23920 "AT5G23920" species...   270  1.8e-23   1


>TAIR|locus:2010419 [details] [associations]
            symbol:AT1G27990 "AT1G27990" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC069471
            UniGene:At.66881 EMBL:AK317213 IPI:IPI00523350 PIR:D86405
            RefSeq:NP_174120.1 PRIDE:Q9C7F4 EnsemblPlants:AT1G27990.1
            GeneID:839692 KEGG:ath:AT1G27990 TAIR:At1g27990
            HOGENOM:HOG000243568 InParanoid:Q9C7F4 OMA:IPRFLPR PhylomeDB:Q9C7F4
            ProtClustDB:CLSN2679353 Genevestigator:Q9C7F4 Uniprot:Q9C7F4
        Length = 271

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 175/252 (69%), Positives = 197/252 (78%)

Query:     1 MSGASLAV-PRNEKDKTTTTDXXXXXXXXXXXXVG-GDVMGSLRVIELQLVAFITVFSAS 58
             MSG SLAV PR + DKT ++              G G +MGSLRVIELQLVAFI VFSAS
Sbjct:     1 MSGVSLAVGPRTDVDKTASSSEKGRWSGMTAIGGGSGGLMGSLRVIELQLVAFILVFSAS 60

Query:    59 GLVPLLDLIFPAFASAYLIALSRLAFPAHGNSSSGSQELFRGGKFFRFYVVVGTTIGLFL 118
             GLVP+LD++FPAFAS Y+IALSRLAFP+HG S++ S E+FRG K FR YV+ GTTIGLFL
Sbjct:    61 GLVPILDMLFPAFASIYIIALSRLAFPSHGVSTA-SPEVFRGSKLFRLYVISGTTIGLFL 119

Query:   119 PLAYVLGGFARGDEDAVRCTTPHLFLLSFQILTENVISGLSMFSSPVRALVPLLYTVKRL 178
             PLAYVLGGFARGD+ AVR  TPHLFLLS QILTENVISGLS+FS PVRALVPLLYTV R+
Sbjct:   120 PLAYVLGGFARGDDHAVRSATPHLFLLSCQILTENVISGLSLFSPPVRALVPLLYTVWRI 179

Query:   179 FLIIDWINDAWFNKTLPANAEVKDTAWYWFGRVLAVANLAYFASNLFCFLIPLFLPRAFE 238
             F+II W  D WFNK+LP NA      W+WFGR LA+ANL YF  NL CFLIP FLPRAFE
Sbjct:   180 FVIIGWSKDVWFNKSLPINATPNVVTWFWFGRYLALANLGYFGVNLLCFLIPRFLPRAFE 239

Query:   239 RYFKERDEIQGK 250
             +YF+ERDEI  K
Sbjct:   240 QYFRERDEILAK 251


>TAIR|locus:2156702 [details] [associations]
            symbol:AT5G52420 "AT5G52420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] GO:GO:0005783 EMBL:CP002688 EMBL:AB019226
            UniGene:At.69935 UniGene:At.8914 IPI:IPI00523108 RefSeq:NP_568771.1
            PRIDE:Q9FHB8 EnsemblPlants:AT5G52420.1 GeneID:835318
            KEGG:ath:AT5G52420 TAIR:At5g52420 InParanoid:Q9FHB8 OMA:ARILVPI
            PhylomeDB:Q9FHB8 ProtClustDB:CLSN2917755 Genevestigator:Q9FHB8
            Uniprot:Q9FHB8
        Length = 242

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 74/207 (35%), Positives = 111/207 (53%)

Query:    35 GDVMGSLRVIELQLVAFITVFSASGLVPLLDLIFPAFASAYLIALSRLAFPAHGNSSSGS 94
             G   G     +L ++A I V SASGLV + D IF      Y   LS+L FP H N +  +
Sbjct:    34 GKPAGFFSFRQLNILAIIIVLSASGLVTIQDFIFTILTLIYFFFLSKLIFPPHNNPNRDA 93

Query:    95 QELFRGGKFFRFYVVVGTTIGLFLPLAYVLGGFARGDEDAVRCTTPHLFLLSFQILTENV 154
                    K FR YV     +GL +P+ Y+  G    D++ V    PH+FLL+ QI  E +
Sbjct:    94 PLTSSTNKIFRIYVTAAGIVGLIIPICYIFEGIVEDDKNGVSAAAPHVFLLASQIFMEGL 153

Query:   155 ISGLSMFSSPVRALVPLLYTVKRLFLIIDWINDAWFNKTLPANAEVKDTAWYWFGRVLAV 214
              +    FS+P R LVP++Y  +R+  +++WI   +  + +      +     + G+VLA 
Sbjct:   154 ATMFG-FSAPARILVPIVYNARRVLTLVEWIMSEFSREDVTGTVSARRM---YAGKVLAA 209

Query:   215 ANLAYFASNLFCFLIPLFLPRAFERYF 241
             ANL  ++ NLF  LIP++LPRAF+RY+
Sbjct:   210 ANLGIWSFNLFGVLIPVYLPRAFKRYY 236


>TAIR|locus:2172878 [details] [associations]
            symbol:AT5G23920 "AT5G23920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005773 "vacuole" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] GO:GO:0005886 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005773 EMBL:AB005244
            HOGENOM:HOG000243568 EMBL:BT005860 EMBL:AK228179 IPI:IPI00536689
            RefSeq:NP_197780.1 UniGene:At.25273 PaxDb:Q9FF88 PRIDE:Q9FF88
            EnsemblPlants:AT5G23920.1 GeneID:832457 KEGG:ath:AT5G23920
            TAIR:At5g23920 eggNOG:NOG313744 OMA:NARRIFA PhylomeDB:Q9FF88
            ProtClustDB:CLSN2914859 Genevestigator:Q9FF88 Uniprot:Q9FF88
        Length = 229

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 70/200 (35%), Positives = 102/200 (51%)

Query:    45 ELQLVAFITVFSASGLVPLLDLIFPAFASAYLIA-LSRLAFPAHGNSSSGSQELFRG-GK 102
             +L  ++F+ + +A GLV + ++ F      YL   LSR AFP     +   + L     K
Sbjct:    32 QLVFLSFMILLAAKGLVGIGEIAFVILCYIYLYEFLSRFAFPR--KQTEQKKRLSNPKNK 89

Query:   103 FFRFYVVVGTTIGLFLPLAYVLGGFARGDEDAVRCTTPHLFLLSFQILTENVISGLS-MF 161
              F+ Y +    IGL  PL Y+  G  RGD        PHLFLLS Q  TE +  G S  +
Sbjct:    90 LFQAYFLATAIIGLLFPLCYIGDGIYRGDIHGAGAAAPHLFLLSGQAFTEPI--GFSDKY 147

Query:   162 SSPVRALVPLLYTVKRLFLIIDWINDAWFNKTLPANAEVKDTAWYWFGRVLAVANLAYFA 221
             S P+  L P+ Y  +R+F ++DW+  A F+ T      ++     + GRV+A  N   + 
Sbjct:   148 SMPIGILGPVFYNARRIFALLDWVK-AEFSDTQRPGGPLR----LYGGRVIASVNTVMWF 202

Query:   222 SNLFCFLIPLFLPRAFERYF 241
              NLF  L+P+FLPR+ E YF
Sbjct:   203 YNLFGLLLPVFLPRSCEIYF 222


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.141   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       246    0.0010  113 3  11 22  0.49    32
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  169 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.17u 0.09s 19.26t   Elapsed:  00:00:01
  Total cpu time:  19.17u 0.09s 19.26t   Elapsed:  00:00:01
  Start:  Fri May 10 02:15:06 2013   End:  Fri May 10 02:15:07 2013

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