BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045721
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QYV|A Chain A, Crystal Structure Of Putative Xaa-His Dipeptidase
           (Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
           Resolution
 pdb|2QYV|B Chain B, Crystal Structure Of Putative Xaa-His Dipeptidase
           (Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
           Resolution
          Length = 487

 Score = 31.6 bits (70), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 205 WYWFGRVLAVANLAYFASNLFCFLIPLFLPRAFERYFKERDEI 247
           W WF ++ A+ + +Y    L  F+I     + F   F ERDE+
Sbjct: 14  WQWFDQICAIPHPSYKEEQLAQFIINWAKTKGF---FAERDEV 53


>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From E. Coli At 3.0 Angstrom Resolution
 pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From E. Coli At 3.0 Angstrom Resolution
          Length = 509

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 35  GDVMGSLRVI--ELQLVAFITVFSASGLVPLLDLIFPAFASAYLIALSRLAFPAHGNSSS 92
           G+ +G   ++    Q+V  ITV S  GLV         FAS Y +A+   A+     S  
Sbjct: 402 GNFVGEFMILFGSFQVVPVITVISTFGLV---------FASVYSLAMLHRAYFGKAKSQI 452

Query: 93  GSQEL 97
            SQEL
Sbjct: 453 ASQEL 457


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,801,280
Number of Sequences: 62578
Number of extensions: 259167
Number of successful extensions: 436
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 2
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)