BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045721
         (273 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1ASH1|Y2689_PELPD UPF0182 protein Ppro_2689 OS=Pelobacter propionicus (strain DSM
           2379) GN=Ppro_2689 PE=3 SV=1
          Length = 890

 Score = 31.6 bits (70), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 144 LLSFQILTENVISGLSMFSSPVRALVPLLYTVKRLFLIID------WINDAW-FNKTLPA 196
           LLS  I +++ I      +  VRA+ P L+     ++++D      WI DA+ F+  LP 
Sbjct: 518 LLSSDITSQSSIIFNRNINERVRAVAPFLHFDDDPYMVVDDRGRLKWIIDAYTFSDRLPC 577

Query: 197 NAEVKDTAWYWFGRVLAVAN-----LAYFASNLFCFLIPLFLPRAFERYF 241
           +  +K    Y    V AV +     LA++ S+    LI     R ++R F
Sbjct: 578 SKPIKGGVNYMRNSVKAVVDAYDGTLAFYISDPHDVLI-----RVYDRMF 622


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,544,581
Number of Sequences: 539616
Number of extensions: 3968223
Number of successful extensions: 11662
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11662
Number of HSP's gapped (non-prelim): 1
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)