Query 045721
Match_columns 273
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0873 C-4 sterol methyl oxid 82.3 1.2 2.5E-05 42.6 2.9 40 201-240 23-64 (283)
2 PF09578 Spore_YabQ: Spore cor 63.6 7.2 0.00016 29.8 2.7 43 59-118 30-73 (80)
3 TIGR02893 spore_yabQ spore cor 39.8 20 0.00043 30.3 1.9 43 60-119 39-82 (130)
4 PF13807 GNVR: G-rich domain o 38.9 26 0.00056 26.5 2.2 19 106-124 60-78 (82)
5 PF12841 YvrJ: YvrJ protein fa 31.6 29 0.00064 24.1 1.3 16 63-78 3-18 (38)
6 KOG4788 Members of chemokine-l 30.2 97 0.0021 26.9 4.6 46 26-71 26-71 (172)
7 TIGR03462 CarR_dom_SF lycopene 25.7 53 0.0012 25.3 2.0 19 59-78 68-86 (89)
8 PF08229 SHR3_chaperone: ER me 23.7 1.5E+02 0.0032 27.1 4.8 31 209-245 130-160 (196)
9 PF07086 DUF1352: Protein of u 21.4 59 0.0013 29.4 1.7 46 70-128 78-123 (186)
10 PTZ00207 hypothetical protein; 19.9 3E+02 0.0065 28.6 6.6 107 116-244 453-562 (591)
No 1
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=82.26 E-value=1.2 Score=42.60 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred cccee-eehhhHHHHHHHHHHHHhhhHhhhhhcc-hHHHHHH
Q 045721 201 KDTAW-YWFGRVLAVANLAYFASNLFCFLIPLFL-PRAFERY 240 (273)
Q Consensus 201 ~~~~w-~~fGR~LAvANl~yw~~NLFgFLiP~fL-PrAf~rY 240 (273)
+|+-| .+.+-...+++++||++||+.++|=+.. |+.|+||
T Consensus 23 ~~d~~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rY 64 (283)
T KOG0873|consen 23 SGDFLLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRY 64 (283)
T ss_pred CCceEEEeechhHHHHHHHHHHhcchheEeecccCcchhhhh
Confidence 34456 7777778899999999999999999888 9999999
No 2
>PF09578 Spore_YabQ: Spore cortex protein YabQ (Spore_YabQ); InterPro: IPR019074 This protein is predicted to span the membrane several times. It is only found in genomes of species that perform sporulation, such as Bacillus subtilis, Clostridium tetani, and other members of the Firmicutes (low-GC Gram-positive bacteria). Mutation of this sigmaE-dependent gene blocks development of the spore cortex. The length of the C-terminal region, which includes some hydrophobic regions, is variable.
Probab=63.58 E-value=7.2 Score=29.82 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=33.4
Q ss_pred CccccchhHHHHHHHHHHHHHhhcccCCCCCCCCCCcccccC-CeeeeehhhhHHHHHHHH
Q 045721 59 GLVPLLDLIFPAFASAYLIALSRLAFPAHGNSSSGSQELFRG-GKFFRFYVVVGTTIGLFL 118 (273)
Q Consensus 59 GlVpl~DlaF~~f~siYl~~ls~~AFP~~~~~~~~~~~vF~g-~klf~~Yv~~G~~VGLfl 118 (273)
-.+.++|++|=++++++++.+- +.. .--+|.|+++|..+|..+
T Consensus 30 ~~~~i~DllfWl~~~~~~F~~l-----------------~~~N~G~iR~Y~~lg~~~G~~l 73 (80)
T PF09578_consen 30 WLTGIEDLLFWLLAALIVFYFL-----------------YWTNYGEIRFYIFLGILLGMIL 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHccceeeeHHHHHHHHHHHHH
Confidence 4578899999999888887432 222 256899999999999876
No 3
>TIGR02893 spore_yabQ spore cortex biosynthesis protein YabQ. YabQ, a protein predicted to span the membrane several times, is found in exactly those genomes whose species perform sporulation in the style of Bacillus subtilis, Clostridium tetani, and others of the Firmicutes. Mutation of this sigma(E)-dependent gene blocks development of the spore cortex. The length of the C-terminal region, including some hydrophobic regions, is rather variable between members.
Probab=39.77 E-value=20 Score=30.33 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccCCCCCCCCCCcccccC-CeeeeehhhhHHHHHHHHH
Q 045721 60 LVPLLDLIFPAFASAYLIALSRLAFPAHGNSSSGSQELFRG-GKFFRFYVVVGTTIGLFLP 119 (273)
Q Consensus 60 lVpl~DlaF~~f~siYl~~ls~~AFP~~~~~~~~~~~vF~g-~klf~~Yv~~G~~VGLflP 119 (273)
++.+||+.|=++++++.+.+- +.. .--.|.|+.+|..+|..+=
T Consensus 39 ~~~ieDilFWi~~~~~vF~~L-----------------~~~N~G~lR~Y~~lg~~~G~~lY 82 (130)
T TIGR02893 39 LVFIEDILFWIVQALIVFYFL-----------------LYVNEGEIRFYVFLALLCGLAIY 82 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHhccchhhHHHHHHHHHHHHHH
Confidence 477899999998888877331 111 2457999999999998763
No 4
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=38.87 E-value=26 Score=26.45 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=16.8
Q ss_pred ehhhhHHHHHHHHHHHHHH
Q 045721 106 FYVVVGTTIGLFLPLAYVL 124 (273)
Q Consensus 106 ~Yv~~G~~VGLflPlaYIL 124 (273)
+.+.+|+++|+++++++++
T Consensus 60 lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 60 LILALGLFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999986
No 5
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=31.61 E-value=29 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.7
Q ss_pred cchhHHHHHHHHHHHH
Q 045721 63 LLDLIFPAFASAYLIA 78 (273)
Q Consensus 63 l~DlaF~~f~siYl~~ 78 (273)
+.+..||++.++||+.
T Consensus 3 I~n~GFPi~va~yLL~ 18 (38)
T PF12841_consen 3 ISNVGFPIAVAIYLLV 18 (38)
T ss_pred hhhcCcHHHHHHHHHH
Confidence 4688999999999984
No 6
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=30.22 E-value=97 Score=26.90 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=31.8
Q ss_pred CcccccCccCcccccchhhhhHHhHhhhhhhccCccccchhHHHHH
Q 045721 26 NARQQQAVGGDVMGSLRVIELQLVAFITVFSASGLVPLLDLIFPAF 71 (273)
Q Consensus 26 ~~~~~~~~~~~~~G~lrviqL~lvafiiVfsaSGlVpl~DlaF~~f 71 (273)
..+.+..=+.+..|.+.+-|+-+-..+..+.+++.++..=..+..+
T Consensus 26 ~~~~~~~ylrt~~G~Lki~e~~l~li~fi~i~~~~~~~~~~~~~~~ 71 (172)
T KOG4788|consen 26 AGRLDTGYLRTLLGLLKILEIVLGLIIFICIASSLAYHLALAFFEF 71 (172)
T ss_pred ccccCcccccchHhHHHHHHHHHHHHHheeeecCcccCCcceeeeH
Confidence 3344455566778999999999888888888888876633333333
No 7
>TIGR03462 CarR_dom_SF lycopene cyclase domain. The domain is generally hydrophobic with a number of predicted membrane spanning segments and contains a distinctive motif (hPhEEhhhhhh). In certain sequences one of either the proline or glutamates may vary, but always one of the tandem pair appear to match this canonical sequence exactly.
Probab=25.72 E-value=53 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=13.2
Q ss_pred CccccchhHHHHHHHHHHHH
Q 045721 59 GLVPLLDLIFPAFASAYLIA 78 (273)
Q Consensus 59 GlVpl~DlaF~~f~siYl~~ 78 (273)
|-+|+||..| .+...++..
T Consensus 68 ~~lPiEE~~F-f~~~~~~~~ 86 (89)
T TIGR03462 68 GDLPIEEFLF-FLLTPLLTV 86 (89)
T ss_pred cCCCHHHHHH-HHHHHHHHH
Confidence 5699999999 444444443
No 8
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=23.70 E-value=1.5e+02 Score=27.11 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHhhhHhhhhhcchHHHHHHHhhhH
Q 045721 209 GRVLAVANLAYFASNLFCFLIPLFLPRAFERYFKERD 245 (273)
Q Consensus 209 GR~LAvANl~yw~~NLFgFLiP~fLPrAf~rYy~~~~ 245 (273)
=|+||..|.+- ++=|.|.|+= ---+||.+|.
T Consensus 130 l~VlAASn~Ii-~~~LvGVLvL-----QaG~~YAe~~ 160 (196)
T PF08229_consen 130 LRVLAASNTII-ALVLVGVLVL-----QAGQWYAERK 160 (196)
T ss_pred HHHHHHhhHHH-HHHHHHHHHH-----HhhHHHHhhh
Confidence 47899999764 4445555542 3456775543
No 9
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=21.36 E-value=59 Score=29.37 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCcccccCCeeeeehhhhHHHHHHHHHHHHHHhccc
Q 045721 70 AFASAYLIALSRLAFPAHGNSSSGSQELFRGGKFFRFYVVVGTTIGLFLPLAYVLGGFA 128 (273)
Q Consensus 70 ~f~siYl~~ls~~AFP~~~~~~~~~~~vF~g~klf~~Yv~~G~~VGLflPlaYILgGf~ 128 (273)
...++-..+++..++|.+. .++++.|.+-..+.|+ +|+.|=.....
T Consensus 78 ~~lS~ip~~~G~~s~~rN~------------i~~l~~y~~~~~~~gl-~pl~~g~~~~~ 123 (186)
T PF07086_consen 78 WCLSLIPSLLGLLSLRRNN------------ISLLRLYMIGSSLFGL-LPLIYGAMYYF 123 (186)
T ss_pred HHHHHHHHHHHHHhcccch------------HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4456666677888887652 2478888865555565 88888765544
No 10
>PTZ00207 hypothetical protein; Provisional
Probab=19.92 E-value=3e+02 Score=28.58 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccccCChhhhhhccchhhHHHHHHhhhhhhhc--CCCcCccchhhhceeeeheehhhhhhHHHHHHhhcC
Q 045721 116 LFLPLAYVLGGFARGDEDAVRCTTPHLFLLSFQILTENVISG--LSMFSSPVRALVPLLYTVKRLFLIIDWINDAWFNKT 193 (273)
Q Consensus 116 LflPlaYILgGf~rGD~~avraAaPHlFLLs~QIltE~v~~~--~~~FS~PvRAlVPv~Yn~RRiF~i~dW~~~e~~~~~ 193 (273)
-.|++.+++.|+..|=+-++ .++...++|......= ..-.+.|+..+ ++|. +..-+|--.|-.|
T Consensus 453 ~~L~~~~~lvg~~~G~~~~~------~~~i~selFgk~~g~~yN~~~~a~pigs~---~~n~---~l~G~~Yd~ea~k-- 518 (591)
T PTZ00207 453 AALPLPYFIAAFANGFMAAT------IALVTRTIFAKDPAKHYNFCFLGSVLSAI---FLNR---LLYGEWYTQQADK-- 518 (591)
T ss_pred cHhHHHHHHHHHHhhHhHHH------HHHHHHHHhccchHHHhhHHhHHHHHHHH---HHHH---HHHHHHHHHHHhh--
Confidence 46789999999999977666 4556688888555431 12556777764 3332 1222333333222
Q ss_pred CCCCCccccceeeehhhHHHHHHHHHH-HHhhhHhhhhhcchHHHHHHHhhh
Q 045721 194 LPANAEVKDTAWYWFGRVLAVANLAYF-ASNLFCFLIPLFLPRAFERYFKER 244 (273)
Q Consensus 194 ~~~~~~~~~~~w~~fGR~LAvANl~yw-~~NLFgFLiP~fLPrAf~rYy~~~ 244 (273)
+++ . .-.|+.==---++.| |.|.+|++.=++|=--.+|+|+..
T Consensus 519 ---~~~---~--~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~ 562 (591)
T PTZ00207 519 ---LGQ---D--VCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKA 562 (591)
T ss_pred ---CCC---C--eeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHH
Confidence 111 1 334555444455666 899999999999998888998663
Done!