Query 045721
Match_columns 273
No_of_seqs 45 out of 47
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 08:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8tfv_A Protein (thanatin); bac 35.9 9.2 0.00031 22.9 0.3 10 169-178 6-15 (21)
2 1yyp_B DNA polymerase, POL; pr 20.2 32 0.0011 21.7 0.8 10 231-240 5-14 (26)
3 1ukx_A GCN2, GCN2 EIF2alpha ki 14.1 97 0.0033 23.6 2.4 19 178-196 115-133 (137)
4 2hac_A T-cell surface glycopro 13.7 52 0.0018 21.8 0.6 8 120-127 4-11 (33)
5 1avo_B 11S regulator; proteaso 11.4 1.8E+02 0.0063 23.8 3.4 21 235-255 70-90 (140)
6 2dax_A Protein C21ORF6; RWD do 7.6 1.5E+02 0.0053 23.3 1.5 14 178-191 125-138 (152)
7 3clj_A Protein NRD1; CTD-inter 7.0 1.8E+02 0.0062 24.3 1.7 18 118-135 59-76 (157)
8 3lw5_I PSI-I, photosystem I re 6.9 1.4E+02 0.0049 19.3 0.8 20 58-77 6-25 (30)
9 2daw_A RWD domain containing p 6.5 1.6E+02 0.0055 23.5 1.1 14 178-191 127-140 (154)
10 1jb0_I Photosystem 1 reaction 6.4 1.7E+02 0.006 19.7 1.0 20 59-78 13-32 (38)
No 1
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=35.87 E-value=9.2 Score=22.95 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=8.7
Q ss_pred hceeeeheeh
Q 045721 169 VPLLYTVKRL 178 (273)
Q Consensus 169 VPv~Yn~RRi 178 (273)
|||+|.-||-
T Consensus 6 vpiiycnrrt 15 (21)
T 8tfv_A 6 VPIIYCNRRT 15 (26)
T ss_dssp CCCEEEEGGG
T ss_pred ccEEEEcCcc
Confidence 7999999984
No 2
>1yyp_B DNA polymerase, POL; processivity fold (SAME fold AS HSV UL42, PCNA, and homotrim sliding clamps), replication-transferase complex; HET: DNA; 2.50A {Human herpesvirus 5}
Probab=20.23 E-value=32 Score=21.71 Aligned_cols=10 Identities=50% Similarity=0.667 Sum_probs=9.3
Q ss_pred hcchHHHHHH
Q 045721 231 LFLPRAFERY 240 (273)
Q Consensus 231 ~fLPrAf~rY 240 (273)
+|||++|.+|
T Consensus 5 iYl~~~Fl~~ 14 (26)
T 1yyp_B 5 LHLEPAFLPY 14 (26)
T ss_pred EecCHHHHHH
Confidence 6999999999
No 3
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=14.12 E-value=97 Score=23.61 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=14.9
Q ss_pred hhhhhhHHHHHHhhcCCCC
Q 045721 178 LFLIIDWINDAWFNKTLPA 196 (273)
Q Consensus 178 iF~i~dW~~~e~~~~~~~~ 196 (273)
||++++|+++...+...|+
T Consensus 115 if~lv~~lqe~l~~~~~p~ 133 (137)
T 1ukx_A 115 IFELAHHVQSFLSEHNKSG 133 (137)
T ss_dssp HHHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHhcCCCC
Confidence 7899999998877665444
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=13.65 E-value=52 Score=21.78 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=6.3
Q ss_pred HHHHHhcc
Q 045721 120 LAYVLGGF 127 (273)
Q Consensus 120 laYILgGf 127 (273)
++|||+|+
T Consensus 4 lCYiLDgi 11 (33)
T 2hac_A 4 LCYLLDGI 11 (33)
T ss_dssp HHHHHHHH
T ss_pred eEeehHHH
Confidence 58888886
No 5
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=11.43 E-value=1.8e+02 Score=23.78 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.9
Q ss_pred HHHHHHHhhhHHHhhhhhhhh
Q 045721 235 RAFERYFKERDEIQGKMAEDK 255 (273)
Q Consensus 235 rAf~rYy~~~~e~~~k~a~d~ 255 (273)
....+||..|+++.+|.++..
T Consensus 70 ~~i~~Y~~~Ra~~v~K~~k~p 90 (140)
T 1avo_B 70 TQISKYFSERGDAVTKAAKQP 90 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 588999999999999987643
No 6
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=7.63 E-value=1.5e+02 Score=23.26 Aligned_cols=14 Identities=7% Similarity=0.396 Sum_probs=11.5
Q ss_pred hhhhhhHHHHHHhh
Q 045721 178 LFLIIDWINDAWFN 191 (273)
Q Consensus 178 iF~i~dW~~~e~~~ 191 (273)
||++++|+++...+
T Consensus 125 if~lv~~lqe~l~~ 138 (152)
T 2dax_A 125 ILNATEWVREHASG 138 (152)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47999999987665
No 7
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=6.99 E-value=1.8e+02 Score=24.29 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.4
Q ss_pred HHHHHHHhccccCChhhh
Q 045721 118 LPLAYVLGGFARGDEDAV 135 (273)
Q Consensus 118 lPlaYILgGf~rGD~~av 135 (273)
||.+||++.++|.=++..
T Consensus 59 L~~LYVvDSIvR~~~~~~ 76 (157)
T 3clj_A 59 LGSLYIIDSIGRAYLDET 76 (157)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeeehHHHHHHHHHHH
Confidence 789999999999855433
No 8
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=6.92 E-value=1.4e+02 Score=19.27 Aligned_cols=20 Identities=55% Similarity=0.785 Sum_probs=16.2
Q ss_pred cCccccchhHHHHHHHHHHH
Q 045721 58 SGLVPLLDLIFPAFASAYLI 77 (273)
Q Consensus 58 SGlVpl~DlaF~~f~siYl~ 77 (273)
|=+||+.-++||+.+...++
T Consensus 6 si~VPlVGlvfPai~Ma~lf 25 (30)
T 3lw5_I 6 SLFVPLVGLLFPAVAMASLF 25 (30)
T ss_dssp TTTTCCCCCHHHHHHHHHTT
T ss_pred chHHhHHHHHHHHHHHHHHH
Confidence 45899999999998876654
No 9
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=6.49 E-value=1.6e+02 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=11.4
Q ss_pred hhhhhhHHHHHHhh
Q 045721 178 LFLIIDWINDAWFN 191 (273)
Q Consensus 178 iF~i~dW~~~e~~~ 191 (273)
||++++|+++...+
T Consensus 127 if~lve~lqe~~~~ 140 (154)
T 2daw_A 127 VCAAIQWLQDNSAS 140 (154)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999977655
No 10
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=6.45 E-value=1.7e+02 Score=19.69 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=15.8
Q ss_pred CccccchhHHHHHHHHHHHH
Q 045721 59 GLVPLLDLIFPAFASAYLIA 78 (273)
Q Consensus 59 GlVpl~DlaF~~f~siYl~~ 78 (273)
=+||+--++||+.+...++.
T Consensus 13 I~VPlVglvfPai~Mallf~ 32 (38)
T 1jb0_I 13 IFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHH
Confidence 36899999999988776653
Done!