BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045722
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
pdb|3TTN|B Chain B, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
Length = 340
Score = 29.6 bits (65), Expect = 0.48, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 58 HCFNWICYICPELLVNFTKDKNI 80
H +NW YI P L +FTK+ I
Sbjct: 8 HIYNWTDYIAPTTLKDFTKESGI 30
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue
pdb|3TTL|B Chain B, Crystal Structure Of Apo-Spue
Length = 340
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 58 HCFNWICYICPELLVNFTKDKNI 80
H +NW YI P L +FTK+ I
Sbjct: 8 HIYNWTDYIAPTTLKDFTKESGI 30
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
Length = 346
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 58 HCFNWICYICPELLVNFTKDKNI 80
H +NW YI P+ L FTK+ I
Sbjct: 11 HVYNWSDYIAPDTLEKFTKETGI 33
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
Length = 345
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 58 HCFNWICYICPELLVNFTKDKNI 80
H +NW YI P+ L FTK+ I
Sbjct: 11 HVYNWSDYIAPDTLEKFTKETGI 33
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE
ABC Transporter Substrate-Binding Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a In
Complex With Calcium And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE
ABC Transporter Substrate-Binding Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a In
Complex With Calcium And Hepes
Length = 330
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 59 CFNWICYICPELLVNFTKDKNI 80
+NW YI PELL FT++ I
Sbjct: 13 IYNWGDYIDPELLTQFTEETGI 34
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
Length = 344
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 58 HCFNWICYICPELLVNFTKDKNI 80
H +NW YI P+ + NF K+ I
Sbjct: 7 HIYNWSDYIAPDTVANFEKETGI 29
>pdb|1R61|A Chain A, The Structure Of Predicted Metal-Dependent Hydrolase
From Bacillus Stearothermophilus
pdb|1R61|B Chain B, The Structure Of Predicted Metal-Dependent Hydrolase
From Bacillus Stearothermophilus
pdb|3KRV|A Chain A, The Structure Of Potential Metal-Dependent Hydrolase
With Cyclase Activity
pdb|3KRV|B Chain B, The Structure Of Potential Metal-Dependent Hydrolase
With Cyclase Activity
Length = 207
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 11 ESMNKNNAIAN--MSETKLSM--HAGPHVDAPDHMFD 43
E K I N ++E+++ M H G H+DAP HM +
Sbjct: 24 EKQPKRTTITNGYVTESRIDMDVHTGTHIDAPLHMVE 60
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 60 FNWICYICPELLVNFTKDKNI 80
+NW Y+ P LL FTK+ I
Sbjct: 7 YNWTEYVPPGLLEQFTKETGI 27
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 60 FNWICYICPELLVNFTKDKNI 80
+NW Y+ P LL FTK+ I
Sbjct: 9 YNWTEYVPPGLLEQFTKETGI 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,652,250
Number of Sequences: 62578
Number of extensions: 88744
Number of successful extensions: 240
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 12
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)