BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045722
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2S2F5|KYNB_SALRD Kynurenine formamidase OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=kynB PE=3 SV=1
Length = 212
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 5 QFLWLVESMNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
Q+ W N++ + N+ +LS H G HVDAP H+ D L L+ F
Sbjct: 24 QWTWTAR-RNEDESSVNLGSLRLSTHTGTHVDAPLHVKRQGQATDDLPLDSF 74
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens
GN=YTHDC2 PE=1 SV=2
Length = 1430
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 9 LVESMNKNNAIANMSETKLSMHAGPHVDAPDH----MFDHYFDVDSLDLEQFQHCFNWIC 64
L+ES + N+ E+ L G + A D + H FD + +DL+ H IC
Sbjct: 558 LLESYSATLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNIC 617
Query: 65 YIC 67
+ C
Sbjct: 618 HSC 620
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus
GN=Ythdc2 PE=2 SV=1
Length = 1445
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 9 LVESMNKNNAIANMSETKLSMHAGPHVDAPDH----MFDHYFDVDSLDLEQFQHCFNWIC 64
L+ES + + N+ E+ L G + A D + H FD + +DL+ H IC
Sbjct: 573 LLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNIC 632
Query: 65 YIC 67
+ C
Sbjct: 633 HSC 635
>sp|Q4KIP4|KYNB_PSEF5 Kynurenine formamidase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=kynB PE=3 SV=2
Length = 217
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQ------HCFNWICYICPELLVN 73
N+ LS H G HVDAP H + + L+ + HC + + PE L+
Sbjct: 42 NVGRVTLSPHTGAHVDAPLHYRPDGLPIGEVSLDVYMGPCRVLHCLDSGALVQPEALLG 100
>sp|A9IU29|KYNB_BORPD Kynurenine formamidase OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=kynB PE=3 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
N+SE +LS H G H DAP H + + ++ LE F
Sbjct: 39 NVSEIRLSPHIGAHADAPLHYSNGAPAIGAVPLEPF 74
>sp|Q84HF4|KYNB_PSEFL Kynurenine formamidase OS=Pseudomonas fluorescens GN=kynB PE=3
SV=1
Length = 218
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQ------HCFNWICYICPELLV 72
N+ + LS H G H DAP H + + S+ LE + HCF+ + P L+
Sbjct: 41 NVGKITLSAHTGAHADAPLHYSNSGAAIGSVPLEPYLGTCRVIHCFDSDGLVRPAQLL 98
>sp|Q1XDQ9|CFXQ_PORYE Protein cfxQ homolog OS=Porphyra yezoensis GN=cfxQ PE=3 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 23 SETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCF 60
S LS HVD PD+ D + + +E+ Q+CF
Sbjct: 189 SNPGLSSRVANHVDFPDYTSDELLQIAKMMIEEQQYCF 226
>sp|Q2T0N2|KYNB_BURTA Kynurenine formamidase OS=Burkholderia thailandensis (strain E264
/ ATCC 700388 / DSM 13276 / CIP 106301) GN=kynB PE=3
SV=2
Length = 213
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 5 QFLWLVESMNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQ------H 58
+ +W +E+ + N++ LS H G H DAP H H + ++ L+ + H
Sbjct: 27 ERVWRIEAGSP----VNVARITLSPHTGAHADAPLHYDAHGAPIGAVPLDAYLGRCRVIH 82
Query: 59 CFNWICYICPE 69
C + P+
Sbjct: 83 CIGAHPVVSPD 93
>sp|A6V681|KYNB_PSEA7 Kynurenine formamidase OS=Pseudomonas aeruginosa (strain PA7)
GN=kynB PE=3 SV=1
Length = 213
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQ------HCFNWICYICPELLVNF 74
N+ LS H G HVDAP H + + L+ + HC + PE L
Sbjct: 41 NVGRVTLSPHTGAHVDAPLHYRADGLAIGQVPLDVYMGPCRVLHCIGATPLVTPEHLAGQ 100
Query: 75 TKD 77
D
Sbjct: 101 LDD 103
>sp|Q7VYS5|KYNB_BORPE Kynurenine formamidase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=kynB PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
N+SE LS H G H DAP H + + ++ LE F
Sbjct: 39 NVSEITLSPHIGAHADAPLHYENGAAAIGAVALEPF 74
>sp|Q7WHE9|KYNB_BORBR Kynurenine formamidase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=kynB PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
N+SE LS H G H DAP H + + ++ LE F
Sbjct: 39 NVSEITLSPHIGAHADAPLHYENGAAAIGAVALEPF 74
>sp|A4IT60|KYNB_GEOTN Kynurenine formamidase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=kynB PE=3 SV=1
Length = 209
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 20 ANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCFNWICYICPELLVNFTKDKN 79
N+ + +S H G H+DAP H + V LDL YI P +++ + K
Sbjct: 39 VNVGQITMSTHTGTHIDAPFHFDNEGKRVIDLDLN---------IYIGPARVIHLSNPKK 89
Query: 80 I 80
I
Sbjct: 90 I 90
>sp|Q2KXW3|KYNB_BORA1 Kynurenine formamidase OS=Bordetella avium (strain 197N) GN=kynB
PE=3 SV=1
Length = 209
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQ------HCFNWICYICPELLVNF 74
N+SE +S H G H DAP H + L LE F H + I PE L +
Sbjct: 39 NVSEITMSPHIGAHADAPLHYANGATAAGCLPLEPFLGPCRVIHALDCGPLILPEHLAHA 98
Query: 75 TKD 77
D
Sbjct: 99 ADD 101
>sp|A9VHP8|KYNB_BACWK Kynurenine formamidase OS=Bacillus weihenstephanensis (strain
KBAB4) GN=kynB PE=3 SV=1
Length = 209
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 6 FLWLVESMNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCFNWICY 65
F + V +N+ N+ + +S+H G H+DAP H + V LD++ Y
Sbjct: 26 FSYEVSWSKENSGSVNVGKLTMSIHTGTHIDAPFHFDNDGKKVLDLDIQ---------VY 76
Query: 66 ICPELLVNFTKDKNI 80
+ P +++ + ++I
Sbjct: 77 VGPARIIDVSNLESI 91
>sp|Q2N5X0|KYNB_ERYLH Kynurenine formamidase OS=Erythrobacter litoralis (strain
HTCC2594) GN=kynB PE=3 SV=1
Length = 216
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 13 MNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
M++ + + N+ +S H+G H DAP H + D S++L+ +
Sbjct: 38 MDEGSPV-NVGRMTMSTHSGTHGDAPLHYAEDGLDAASMELDSY 80
>sp|A7GPY2|KYNB_BACCN Kynurenine formamidase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=kynB PE=3 SV=1
Length = 209
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 6 FLWLVESMNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCFNWICY 65
F + V + + N+ + +S+H G H+DAP H + V LD+ Y
Sbjct: 26 FSYEVSCTKEQSGSVNIGKVTMSIHTGTHIDAPFHFDNDGKKVIDLDIH---------VY 76
Query: 66 ICPELLVNFT 75
+ P +++ +
Sbjct: 77 VGPARIIDVS 86
>sp|P51228|CFXQ_PORPU Protein cfxQ homolog OS=Porphyra purpurea GN=cfxQ PE=3 SV=1
Length = 301
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 23 SETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCF 60
S LS HVD PD+ + + + +E+ Q+CF
Sbjct: 190 SNPGLSSRVANHVDFPDYTSEELLQIAKMMIEEQQYCF 227
>sp|A9BVE1|KYNB_DELAS Kynurenine formamidase OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=kynB PE=3 SV=1
Length = 209
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 21 NMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQF 56
N+S LS H G H DAP H + ++DL+ F
Sbjct: 40 NVSAITLSPHVGAHADAPLHYDADGASIGNVDLDAF 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,590,274
Number of Sequences: 539616
Number of extensions: 1101597
Number of successful extensions: 2497
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2477
Number of HSP's gapped (non-prelim): 26
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)