Query 045722
Match_columns 82
No_of_seqs 125 out of 1013
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r61_A Metal-dependent hydrola 99.6 1.6E-16 5.6E-21 113.6 5.8 59 7-77 27-85 (207)
2 2b0a_A Hypothetical protein MJ 99.4 6.8E-14 2.3E-18 99.1 4.4 48 13-76 25-75 (186)
3 2k16_A Transcription initiatio 11.7 70 0.0024 18.3 0.7 12 32-43 1-12 (75)
4 3cmi_A Peroxiredoxin HYR1; thi 11.7 1.8E+02 0.0063 17.8 2.8 18 49-75 23-40 (171)
5 3ici_C Calnexin, PP90; protein 10.5 88 0.003 16.9 0.8 12 32-43 1-12 (38)
6 2g0i_A Hypothetical protein SM 9.4 3.7E+02 0.013 17.9 3.8 28 2-33 31-58 (145)
7 3sd4_A PHD finger protein 20; 8.4 87 0.003 18.0 0.2 28 38-74 9-36 (69)
8 2eqm_A PHD finger protein 20-l 6.9 1.3E+02 0.0045 18.3 0.5 33 37-76 15-47 (88)
9 2iue_A Pactolus I-domain; memb 6.7 1.3E+02 0.0045 21.1 0.6 11 36-46 113-123 (212)
10 3ntk_A Maternal protein tudor; 6.1 1E+02 0.0035 20.2 -0.3 12 33-44 9-20 (169)
No 1
>1r61_A Metal-dependent hydrolase; zinc-dependent hydrolase, structural genomics, cyclase, PSI, protein structure initiative; 2.50A {Geobacillus stearothermophilus} SCOP: c.8.8.1 PDB: 3krv_A
Probab=99.64 E-value=1.6e-16 Score=113.63 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=53.2
Q ss_pred eEEEEEeecCCceeEEeeEEeeccccccccCCccccCCCCCccCCChHHHHhhcccceecCCEEEEEccCC
Q 045722 7 LWLVESMNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDSLDLEQFQHCFNWICYICPELLVNFTKD 77 (82)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~i~l~~H~GTHvDAP~H~~~~g~~id~lple~f~~~~~~~~~~gp~~vvd~~~~ 77 (82)
++...++++ + ++.+.+++++|+|||+|||.||.++|.+++++|++.|+ ||++|||++..
T Consensus 27 ~~~~~~~~~-~--~~~~~i~~~~H~GTH~Dap~H~~~~g~~i~~~pl~~~~---------g~~vviD~~~~ 85 (207)
T 1r61_A 27 PKRTTITNG-Y--VTESRIDMDVHTGTHIDAPLHMVEGGATFETIPLNDLV---------GPCKLFDLTHV 85 (207)
T ss_dssp CEEEEEEET-T--EEEEEEEEETTSSSEEECCGGGSCSSCTTCCCCCTTTE---------EEEEEEECTTC
T ss_pred EEEeeecCC-c--eEEeEEEECCCCchhhchHhhcCCCCcChhhCChhHcc---------ceEEEEEEeCC
Confidence 556666644 3 99999999999999999999999999999999999999 99999999864
No 2
>2b0a_A Hypothetical protein MJ0783; structural genomics, PSI, protein STRU initiative; 1.45A {Methanocaldococcus jannaschii} SCOP: c.8.8.1
Probab=99.44 E-value=6.8e-14 Score=99.08 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=44.1
Q ss_pred eecCCceeEEeeEEeeccccccccCCccccCCCCCccC-CChHH--HHhhcccceecCCEEEEEccC
Q 045722 13 MNKNNAIANMSETKLSMHAGPHVDAPDHMFDHYFDVDS-LDLEQ--FQHCFNWICYICPELLVNFTK 76 (82)
Q Consensus 13 ~~~~g~~~~~~~i~l~~H~GTHvDAP~H~~~~g~~id~-lple~--f~~~~~~~~~~gp~~vvd~~~ 76 (82)
++++| ++.+++++++|+|||+|||.||. ||+ +|+++ |+ ||++|||++.
T Consensus 25 ~~~~g--~~~~~i~~~~H~GTHiDap~H~~-----id~~ipl~~g~~~---------g~~vviD~~~ 75 (186)
T 2b0a_A 25 KKIDG--FIVSEIIMGSHLCTHIDYPKHVG-----LENRIPFKDGIIK---------GKGYCISLDD 75 (186)
T ss_dssp EEETT--EEEEEEECCTTSSSEEECGGGGT-----CCCCCSSGGGCEE---------EEEEEEETTT
T ss_pred ecCCc--EEEEEEEecCCcccCccchhhee-----ecccccCCCCeEE---------eEEEEEEEec
Confidence 55566 99999999999999999999998 999 99999 99 9999999853
No 3
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=11.74 E-value=70 Score=18.30 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=8.7
Q ss_pred cccccCCccccC
Q 045722 32 GPHVDAPDHMFD 43 (82)
Q Consensus 32 GTHvDAP~H~~~ 43 (82)
|+|+.||....+
T Consensus 1 gs~~~~P~~~~~ 12 (75)
T 2k16_A 1 GSHMAMAYVIRD 12 (75)
T ss_dssp CCSSSSSSEEEC
T ss_pred CCCcCCCCcccc
Confidence 788888876643
No 4
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=11.67 E-value=1.8e+02 Score=17.80 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=14.1
Q ss_pred cCCChHHHHhhcccceecCCEEEEEcc
Q 045722 49 DSLDLEQFQHCFNWICYICPELLVNFT 75 (82)
Q Consensus 49 d~lple~f~~~~~~~~~~gp~~vvd~~ 75 (82)
..+.|+.+- |+.++|++.
T Consensus 23 ~~~~l~~~~---------Gk~vll~F~ 40 (171)
T 3cmi_A 23 QPFPFDQLK---------GKVVLIVNV 40 (171)
T ss_dssp CBCCGGGGT---------TCEEEEEEE
T ss_pred CEecHHHcC---------CCEEEEEEE
Confidence 356788888 999999875
No 5
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=10.50 E-value=88 Score=16.94 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.3
Q ss_pred cccccCCccccC
Q 045722 32 GPHVDAPDHMFD 43 (82)
Q Consensus 32 GTHvDAP~H~~~ 43 (82)
|+|+|-|.++-+
T Consensus 1 ~~~~dep~~IpD 12 (38)
T 3ici_C 1 GSHMDEPKFIPD 12 (38)
T ss_pred CCcccccccccC
Confidence 688898887754
No 6
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A
Probab=9.36 E-value=3.7e+02 Score=17.91 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=16.8
Q ss_pred CCCceeEEEEEeecCCceeEEeeEEeeccccc
Q 045722 2 KWGQFLWLVESMNKNNAIANMSETKLSMHAGP 33 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~i~l~~H~GT 33 (82)
.+|.+++-.-.. ++| ....++++.|+|-
T Consensus 31 ~~~~MIkV~i~~-~~g---~i~~f~vsGHAgy 58 (145)
T 2g0i_A 31 GRGSMIQATFIR-RKG---ILESVELTGHAGS 58 (145)
T ss_dssp ---CCEEEEEEE-ETT---EEEEEEEECCC-C
T ss_pred CCCceEEEEEEE-cCC---cEEEEEEEeCCCC
Confidence 355566655544 566 4688999999984
No 7
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=8.35 E-value=87 Score=17.95 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=22.1
Q ss_pred CccccCCCCCccCCChHHHHhhcccceecCCEEEEEc
Q 045722 38 PDHMFDHYFDVDSLDLEQFQHCFNWICYICPELLVNF 74 (82)
Q Consensus 38 P~H~~~~g~~id~lple~f~~~~~~~~~~gp~~vvd~ 74 (82)
|.|.|.-|..++.++...-. ++|.|+++
T Consensus 9 ~~~~F~vGmkLEa~d~~~p~---------~~AtV~~v 36 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRLKNW---------YPAHIEDI 36 (69)
T ss_dssp TTCCCSTTCEEEEECTTSCE---------EEEEEEEE
T ss_pred CCCCcCCCCEEEEEECCCCc---------cccEEEEE
Confidence 67888888888888777665 68888886
No 8
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=6.86 E-value=1.3e+02 Score=18.33 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCccccCCCCCccCCChHHHHhhcccceecCCEEEEEccC
Q 045722 37 APDHMFDHYFDVDSLDLEQFQHCFNWICYICPELLVNFTK 76 (82)
Q Consensus 37 AP~H~~~~g~~id~lple~f~~~~~~~~~~gp~~vvd~~~ 76 (82)
.|.|-|.-|..++.++...-. |+++++++|+..
T Consensus 15 ~~~~~F~vGmkLEA~D~~~~~-------~~a~i~~v~~~~ 47 (88)
T 2eqm_A 15 RPGITFEIGARLEALDYLQKW-------YPSRIEKIDYEE 47 (88)
T ss_dssp CSSCCCCSSCEEEEECTTSCE-------EEEEEEEEETTT
T ss_pred CCcCcCCCCCEEEEEcCCCCe-------eEEEEEEEeccC
Confidence 466788888888887765432 457777777643
No 9
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=6.71 E-value=1.3e+02 Score=21.12 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=8.5
Q ss_pred cCCccccCCCC
Q 045722 36 DAPDHMFDHYF 46 (82)
Q Consensus 36 DAP~H~~~~g~ 46 (82)
|||.|+..+|+
T Consensus 113 Da~~H~~gDg~ 123 (212)
T 2iue_A 113 DNDFHLAKDKT 123 (212)
T ss_dssp SSCBCCTTGGG
T ss_pred cCCccccCCcc
Confidence 88888887664
No 10
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=6.14 E-value=1e+02 Score=20.21 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=9.3
Q ss_pred ccccCCccccCC
Q 045722 33 PHVDAPDHMFDH 44 (82)
Q Consensus 33 THvDAP~H~~~~ 44 (82)
||++.|+||+-.
T Consensus 9 t~v~~p~~F~vq 20 (169)
T 3ntk_A 9 VQFDGPMSFYVQ 20 (169)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEeCCCEEEEE
Confidence 788888888654
Done!