BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045723
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q503V9|ENDUB_DANRE Poly(U)-specific endoribonuclease-B OS=Danio rerio GN=endoub PE=2
SV=1
Length = 282
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 153/272 (56%), Gaps = 10/272 (3%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEID----CGDGKKAYQKDDMAQGSLFSWLSDDVFRKP 221
+LS LW+ D+NRL PG DY I GD D A LFS++ +++F+K
Sbjct: 7 ELSALIQELWDNDTNRLRPGIDYRISLQGKAGDLAGVPDDSDGAGMPLFSFVDENIFKKE 66
Query: 222 TYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNY 281
T+ F SLLDNY + G E+VT EE+ E F++ + +T +K HKYL K + +
Sbjct: 67 TFLAFISLLDNYESDTGEPEIVTPEEEMENHRFLDSVIKTPTMKIAHKYLVEKRLSPEDT 126
Query: 282 QDFKRTISSLWFDLYGRGGTSSC-SSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKG 340
FK+ + +WF+LY R G+S SS FEHVFVGE + G V GFHNW+Q L+E G
Sbjct: 127 TGFKQQLYKIWFELYARKGSSKPDSSGFEHVFVGETR--GGHTVIGFHNWIQLYLQEKLG 184
Query: 341 NVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVG 400
++DY+GY Q PD +L +QF W +K + +GVSPEFE +LYTLCF +
Sbjct: 185 HIDYKGYSVNANSPQ-PDENKHMLALQFSWKNGIKPKGSIFIGVSPEFEFSLYTLCFLMS 243
Query: 401 -GEDNYVQLGPYPVNIKCYRFGDR-IGSVFPI 430
E V Y V I C+ + + IG+ +P+
Sbjct: 244 PNERVKVSFNLYDVEIVCHHYNQKHIGTTYPV 275
>sp|Q8JFY9|ENDUA_XENLA Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-a
PE=1 SV=1
Length = 292
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 153/276 (55%), Gaps = 15/276 (5%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR 219
+LS+ LW+ D NR+ GKDY I GK Y Q D A LF ++ ++ +
Sbjct: 11 ELSKLFNELWDADQNRMKSGKDYRISL-QGKAGYVPAGSNQARDSASFPLFQFVDEEKLK 69
Query: 220 -KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
+ T++ F SLLDNY + G EVVT EE E F++ I T +K H YL K
Sbjct: 70 SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 129
Query: 279 GNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEE 337
DFK + ++WF LY R G+ S FEHVFVGE K+ QE+ G HNW+QF L+E
Sbjct: 130 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--QEMMGLHNWVQFYLQE 187
Query: 338 AKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 397
+ N+DY+GY+ R+ PD + Q+L +QF W ++K V ++ +GVSPEFE ALYT+ F
Sbjct: 188 KRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVF 246
Query: 398 FVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPI 430
E V+L Y + I R G IG+ +P+
Sbjct: 247 LASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPV 282
>sp|B1WBB4|ENDUB_XENLA Poly(U)-specific endoribonuclease-B OS=Xenopus laevis GN=endou-b
PE=2 SV=1
Length = 292
Score = 188 bits (478), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR 219
+LS+ LW+ D NR+ GKDY I GK Y Q D A LF ++ ++ +
Sbjct: 11 ELSKLFNELWDADVNRMKAGKDYRISL-QGKAGYVPARSNQAKDSASYPLFQFVDEEKLK 69
Query: 220 -KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
K T++ F SLLDNY + G EVVT EE E F++ I T +K H YL K
Sbjct: 70 SKKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 129
Query: 279 GNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEE 337
+ DFK + S+WF LY R G+ S FEHVFVGE K+ +E+ G HNW+QF L+E
Sbjct: 130 PSQNDFKVQLYSIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--KEMMGLHNWVQFYLQE 187
Query: 338 AKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 397
+ N+DY+GY+ R+ PD + Q+L +QF W ++K V ++ +GVSPEFE ALYT+ F
Sbjct: 188 KRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFSWKEMVKPVGSSFIGVSPEFEFALYTIVF 246
Query: 398 FVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFP 429
++L Y + I R G IG+ +P
Sbjct: 247 LASQAKMSREVIRLEEYELQIVVNRHGRYIGTAYP 281
>sp|B1H3D5|ENDOU_XENTR Poly(U)-specific endoribonuclease OS=Xenopus tropicalis GN=endou
PE=2 SV=1
Length = 293
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 153/278 (55%), Gaps = 19/278 (6%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR 219
+LS+ LW+ D NR+ GKDY I GK Y Q D A LF ++ ++ R
Sbjct: 12 ELSKLFNELWDADENRMKAGKDYRISL-QGKAGYVPAGSNQARDSASYPLFQFVDEEKLR 70
Query: 220 -KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
+ T++ F SLLDNY + G EVVT EE E F++ I T +K H YL K
Sbjct: 71 SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNTFLDAILETKVMKIAHDYLVRKNQAK 130
Query: 279 GNYQDFKRTISSLWFDLYGRG---GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCL 335
+ DFK + ++WF LY R G SC FEHVFVGE K+ +E+ G HNW+QF L
Sbjct: 131 PSRNDFKAQLYTIWFQLYSRAPGQGPDSC--GFEHVFVGESKRG--KEIMGLHNWVQFYL 186
Query: 336 EEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTL 395
+E + +DY+GY+ R+ PD + Q+L +QF W ++K + ++ +GVSPEFE ALYT+
Sbjct: 187 QEKRKTIDYKGYV-GRQNKSRPDHDDQVLNLQFSWKEMVKPIGSSFIGVSPEFEFALYTV 245
Query: 396 CFFVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPI 430
F E V++ Y + I R G IG+ +P+
Sbjct: 246 VFLTSQEKMTREVVRVEEYEMQIVVNRHGRYIGTAYPV 283
>sp|Q1LUM3|ENDUC_DANRE Poly(U)-specific endoribonuclease-C OS=Danio rerio GN=endouc PE=2
SV=1
Length = 309
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/277 (39%), Positives = 151/277 (54%), Gaps = 20/277 (7%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKD------DMAQGSLFSWLSDDVFR 219
+LS LW+LD NR+ P +Y I GK Y D A LF + +
Sbjct: 30 ELSNIFNELWKLDVNRMEPLTNYNISL-QGKAGYIPQGSTNVVDHASSPLFVNVDEAKLS 88
Query: 220 K-PTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
TY+RF LLDNY + G E VT+EE E +F++ I TA +K H+YL KG
Sbjct: 89 SITTYARFMKLLDNYERSTGVAERVTAEEVTENNSFLDAILETAVMKRAHQYLIGKGKSR 148
Query: 279 GNYQDFKRTISSLWFDLYGR---GGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCL 335
+ + FK + +WF LY R GG SS FEHVFVGE K +E+ G HNW+QF L
Sbjct: 149 SDLRQFKSQLYYMWFRLYHRERNGGED--SSGFEHVFVGETKFG--REIMGLHNWVQFYL 204
Query: 336 EEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTL 395
+E + +DY+GY R VPD++ +L VQF W+G++K V++ VGVSPEFE+A++T+
Sbjct: 205 QEKQNLLDYKGY--KARANDVPDADDHVLNVQFSWHGLVKPVASAFVGVSPEFEMAVFTI 262
Query: 396 CFFVGGEDN---YVQLGPYPVNIKCYRFGDRIGSVFP 429
F E V L Y + + +R G IG+ +P
Sbjct: 263 LFLTSTEKTTTAVVNLDEYQLEMVVHRHGRCIGTAYP 299
>sp|P21128|ENDOU_HUMAN Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1
SV=2
Length = 410
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 153/263 (58%), Gaps = 16/263 (6%)
Query: 160 SEEELADLSQGCYRLWELDSNRLVPGKDYEID---CGDGKKAYQKDDMAQGSLFSWLSDD 216
++EE+ +S+ YR D+N+ +D ++ C + + D LF+++++
Sbjct: 137 TKEEIQSISEKIYRA---DTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEK 192
Query: 217 VFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGI 276
+F KPTY+ F +LL+NY GH E +++E EQ AF+ EI +TA +K L+ +L +
Sbjct: 193 LFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNR 252
Query: 277 VSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLE 336
G+ Q+F + ++WF LY RG SS FEHVF GE+K+ +V+GFHNW++F LE
Sbjct: 253 Y-GSEQEFVDDLKNMWFGLYSRGNEEGDSSGFEHVFSGEVKKG---KVTGFHNWIRFYLE 308
Query: 337 EAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLC 396
E +G VDY +I+ PD +L +QF W+G K V + +G SPEFE ALY+LC
Sbjct: 309 EKEGLVDYYSHIYDGPWDSYPD----VLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLC 364
Query: 397 FFV-GGEDNYVQLGPYPVNIKCY 418
F G+ + LG YP+ ++ Y
Sbjct: 365 FIARPGKVCQLSLGGYPLAVRTY 387
>sp|Q3V188|ENDOU_MOUSE Poly(U)-specific endoribonuclease OS=Mus musculus GN=Endou PE=2
SV=1
Length = 412
Score = 161 bits (408), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 132/217 (60%), Gaps = 9/217 (4%)
Query: 203 DMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTA 262
D + LF+++++ +F KPTY+ F +LL+NY GH E ++++ +EQ F+ E+ +TA
Sbjct: 180 DRSPEPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQQLEEQGVFLREVMKTA 239
Query: 263 PIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQ 322
+K L+ +L + S Q+F + ++WF LY RG SS FEHVF GE+K+
Sbjct: 240 VMKELYSFLHHQNRYSSE-QEFVDDLKNMWFGLYSRGNDEGDSSGFEHVFSGEVKKG--- 295
Query: 323 EVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLV 382
+V+GFHNW++F L+E +G +DY + + PD +L +QF W+G K V + +
Sbjct: 296 KVTGFHNWIRFYLQEKEGLLDYYSHNYDGPWDSYPD----VLAMQFNWDGYYKEVGSVFI 351
Query: 383 GVSPEFEIALYTLCFFV-GGEDNYVQLGPYPVNIKCY 418
G SPEFE ALY+LCF G+ ++ LG YP+ I+ Y
Sbjct: 352 GSSPEFEFALYSLCFITRPGKKCHLSLGGYPLAIQTY 388
>sp|A6QLQ8|ENDOU_BOVIN Poly(U)-specific endoribonuclease OS=Bos taurus GN=ENDOU PE=2 SV=1
Length = 413
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 149/263 (56%), Gaps = 16/263 (6%)
Query: 160 SEEELADLSQGCYRLWELDSNRLVPGKDYEID---CGDGKKAYQKDDMAQGSLFSWLSDD 216
++EEL +S+ YR D+N+ +D ++ C + + D LF+++++
Sbjct: 139 TKEELQSVSEKIYRA---DTNK-ARKEDIVLNSQNCISPSETRDQVDRCPEPLFTYVNEK 194
Query: 217 VFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGI 276
+F KPTYS F +LL+NY G E T++E EQ F+ EI +TA +K L+ +L +
Sbjct: 195 LFSKPTYSAFLNLLNNYQRATGRGEHFTAQELAEQDTFLREIMKTAVMKELYGFLHQQNR 254
Query: 277 VSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLE 336
S Q+F + ++WF LY R SS FEHVF GE+K+ +V+GFHNW++F ++
Sbjct: 255 YSSE-QEFVSDLKNMWFGLYSRSKEERDSSGFEHVFSGEVKKG---KVTGFHNWIRFYMQ 310
Query: 337 EAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLC 396
E +G VDY +I+ PD +L +QF W+G K V + +G SPEFE ALY+LC
Sbjct: 311 EKEGLVDYYSHIYDGPWDSYPD----VLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLC 366
Query: 397 FFV-GGEDNYVQLGPYPVNIKCY 418
F G+ + LG +P+ I+ Y
Sbjct: 367 FIARPGKVCQLSLGGHPLAIQTY 389
>sp|A1L237|ENDUA_DANRE Poly(U)-specific endoribonuclease-A OS=Danio rerio GN=endoua PE=2
SV=1
Length = 303
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 153/285 (53%), Gaps = 25/285 (8%)
Query: 160 SEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQK---DDMAQGSLFSWLSDD 216
S+ E+ LS+ L++LDSNR + ID + Q +D++ LF +S
Sbjct: 30 SDAEIKSLSE---TLYKLDSNR-ATASELLIDPQTLIPSSQTGSGNDLSPQPLFKVVSST 85
Query: 217 VFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGI 276
+ KPTY F LLDNY G E V S E+QEQ +F+++ T K L +L +KG
Sbjct: 86 LLSKPTYEAFLDLLDNYKKMTGEVEDVPSHEEQEQDSFLQQTMNTNLGKELFNFLHSKG- 144
Query: 277 VSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCL 335
V G+ +F + + +WF LY R G SS FEH+FVGEIK +VSGFH+W+QF
Sbjct: 145 VYGSQSEFLQDLKMMWFGLYSRSDGVKLDSSGFEHIFVGEIKGG---KVSGFHSWVQFYQ 201
Query: 336 EEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTL 395
E +G ++Y + F PD +L +QF W+G K + + +G SPEF++A+Y+L
Sbjct: 202 CEKQGILNYYSHSFDGPWTTYPD----VLGMQFNWDGYFKELGSAFIGCSPEFDLAIYSL 257
Query: 396 CFFV-GGEDNYVQLGPYPVNIKCYR-----FGD---RIGSVFPIA 431
C+ G+ V LG + + I+ Y +GD IGS +PI
Sbjct: 258 CYITRPGKKCDVSLGGHSLGIQTYTWDKSSYGDGKKFIGSAYPIT 302
>sp|Q21109|ENDOU_CAEEL Poly(U)-specific endoribonuclease homolog OS=Caenorhabditis elegans
GN=K02A11.3 PE=1 SV=1
Length = 307
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 149/286 (52%), Gaps = 26/286 (9%)
Query: 157 LEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDD 216
+ S EL ++Q +L ++D+NR P + +++ D AQ LFS +
Sbjct: 23 FDVSNSELLAMAQ---KLRQVDTNRARPDQ-IKLNYQGHTVTRDDSDAAQAKLFSKVDTS 78
Query: 217 VFRKPTYSRFCSLLDNYNPNAGHKE--VVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAK 274
+FRKP+Y + +L+DN+N G E V +EEK E F++ + + P++ L+ + AK
Sbjct: 79 LFRKPSYELYINLMDNFNRQTGVIEPRVSQAEEKNEVGKFLDYVLESRPMQELYNWFKAK 138
Query: 275 G-IVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQF 333
G ++ + Q F+ I LWF Y R +S FEHVF+GE K E+SG HNW++F
Sbjct: 139 GHPIATSPQVFRFWIGQLWFSHYSRALGRPDTSGFEHVFIGEAKNG---EISGMHNWVRF 195
Query: 334 CLEE--AKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIA 391
+ E N DY+G+ R + ++F W+G+LK + L+G SPEF++A
Sbjct: 196 YVLENNRTENFDYKGFTVKRF--------NIMAALKFTWDGLLKRAGSILIGTSPEFDMA 247
Query: 392 LYTLCFFV--GGEDNYVQLGPYPVNIKCYRFGDR----IGSVFPIA 431
LYT+CF G E V+ P+ I + + IGS++P A
Sbjct: 248 LYTMCFLSRRGRETCDVEFDGCPLQITSFEIMQQNKVYIGSIYPTA 293
>sp|Q9PTU6|ENDOU_PAROL Poly(U)-specific endoribonuclease OS=Paralichthys olivaceus
GN=endou PE=2 SV=1
Length = 385
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 142/269 (52%), Gaps = 22/269 (8%)
Query: 174 LWELDSNRLVPGK---DYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLL 230
L+ LDSN+ + D + D + + Q+D ++ LF ++ + +PTY+ F ++L
Sbjct: 123 LYALDSNKATASELIIDPQALVHDSQTSSQRD-LSSRPLFRYVDGTLLSRPTYAAFLAVL 181
Query: 231 DNYNPNAGHKEVVTSEEKQEQAAFIEE-ISRTAPIKYLHKYLSAKGIVSGNYQDFKRTIS 289
DNY+ G E + ++ EQ FI+E +S T + L +L KG+ + +F +
Sbjct: 182 DNYHRMTGQVEDFSPQQLSEQETFIKEAMSNTELGRELFAFLYTKGVYASE-NEFLHDLK 240
Query: 290 SLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIF 349
+WF LY R SS FEH+F GEIK +VSGFHNW+QF E +G ++Y + F
Sbjct: 241 MMWFGLYSRYNNKMDSSGFEHIFAGEIKGG---KVSGFHNWIQFYRLEKRGQLNYYSHSF 297
Query: 350 PRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFV-GGEDNYVQL 408
PD ++ +QF+W+G K V + ++G SPEF+ ALY+LC+ G+ + L
Sbjct: 298 NGPWTTFPD----VMGMQFKWDGYFKQVGSAVIGCSPEFDFALYSLCYITRPGKQCRLSL 353
Query: 409 GPYPVNIKCY-----RFGD---RIGSVFP 429
G + I+ Y +G+ I S FP
Sbjct: 354 GGKELIIQTYTWDKTTYGNGKKFIASAFP 382
>sp|A8E624|ENDUC_XENLA Poly(U)-specific endoribonuclease-C OS=Xenopus laevis GN=endou-c
PE=2 SV=1
Length = 303
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 109/196 (55%), Gaps = 9/196 (4%)
Query: 203 DMAQGSLFSWLSD-DVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRT 261
D A LF ++++ +F +PT++R +LLDNY G E V + E EQ AF++EI +T
Sbjct: 74 DYANQKLFRYVNEAKLFARPTFARLVNLLDNYAQKTGSAESVPTTEVNEQNAFLDEIFKT 133
Query: 262 APIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGE 321
+ I L + +KG S FK + ++WF LY R SS FEHVF GEI +
Sbjct: 134 SIITKLSNFFISKGYYSSA-ASFKTDLKAMWFGLYTRTSGPLDSSGFEHVFHGEIHKG-- 190
Query: 322 QEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTL 381
+VSG HNW++ L E G V+Y Y PD + Q +W+ LK++ +
Sbjct: 191 -KVSGLHNWVKLYLLEKSGQVNYLSYSADGVWKGYPD----IYAFQLKWSTYLKTIGSFF 245
Query: 382 VGVSPEFEIALYTLCF 397
VG SPEF+IA+YTLC+
Sbjct: 246 VGSSPEFDIAMYTLCY 261
>sp|A8E627|ENDUD_XENLA Poly(U)-specific endoribonuclease-D OS=Xenopus laevis GN=endou-d
PE=2 SV=1
Length = 305
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 9/196 (4%)
Query: 203 DMAQGSLFSWLSD-DVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRT 261
D A LF+++++ +F +PT++R LLDNY G E V + E EQ AFI+EI +T
Sbjct: 75 DFASQKLFNYVNEAKLFARPTFARLVDLLDNYVHTTGTAESVPTAEVNEQNAFIDEIFKT 134
Query: 262 APIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGE 321
+ I L + +KG S FK + +WF LY R SS FEHVF GEI +
Sbjct: 135 SIITKLSDFFISKGYYSSA-ASFKTDLKEMWFGLYTRTSGPLDSSGFEHVFHGEIHKG-- 191
Query: 322 QEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTL 381
++SG HNW++ L E G V+Y Y PD + Q +W+ LK++ +
Sbjct: 192 -KISGLHNWVRLYLLEKSGQVNYLSYSSDGVWNGYPD----IYAFQLKWSTYLKTLGSFF 246
Query: 382 VGVSPEFEIALYTLCF 397
+G SPEF+IA+YTLC+
Sbjct: 247 IGSSPEFDIAMYTLCY 262
>sp|Q9VZ49|ENDOU_DROME Poly(U)-specific endoribonuclease homolog OS=Drosophila
melanogaster GN=CG2145 PE=1 SV=1
Length = 592
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 142/302 (47%), Gaps = 43/302 (14%)
Query: 142 PNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQK 201
P Q N V DD + +L +L L+ +SN + + +++ ++
Sbjct: 318 PGFQSSGNSVATDDEIR----QLTEL------LYTKESNSQI--GNIQVNLQGRTRSIDS 365
Query: 202 DDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRT 261
D A L + + PT + L +NY + E VT E++E+ F++ + T
Sbjct: 366 ADEAPNPLLT-VDSKALESPTIVKMRLLFNNYEHDTHVNEHVTPNERKEENDFLDAVMAT 424
Query: 262 APIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGE 321
++ +L KG+VS + + + + LWF Y RG SS FEHVFV E+K +
Sbjct: 425 PVMRQAMLFLQQKGVVSPDPKTHRDLVKELWFTQYSRGQGKIGSSGFEHVFVYEVK---D 481
Query: 322 QEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTL 381
+ GFHNW+ EE G DY+GY+ + G ++ +++ ++F G+ K V+T
Sbjct: 482 GTIIGFHNWVYIGDEEKDGRFDYKGYMKEQDIG----TKGKIVKIRFSHQGLNKPVNTVF 537
Query: 382 VGVSPEFEIALYTLCFFVGGEDNYVQLGP---YPVNIKCYRFG-----------DRIGSV 427
VG SPE E+ALYT+CF QL P PV++ +FG + IGS
Sbjct: 538 VGTSPELELALYTVCF---------QLRPDRTCPVSLGNSKFGIVTYSWRYRGKNLIGSA 588
Query: 428 FP 429
+P
Sbjct: 589 YP 590
>sp|Q4UNB8|Y089_RICFE Uncharacterized protein RF_0089 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_0089 PE=3 SV=1
Length = 1138
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 11 VALGGGRDRDDREEEQRSRDERSRSSWAE-----VVSGDQDRDAQERRRHSQHNNQWSVQ 65
VA GGGR RD + EE R + W E VV+ ++RD + + ++ +
Sbjct: 955 VASGGGRIRDQQGEETSERRTNAEKKWNELVDSGVVTEIRERDNSVTNKFDKLADELNKS 1014
Query: 66 EESQVWQDEGSRPSRR-------PQKAVDEGHEKNEGFNWNQNNWNREEKREDNNDGWET 118
E+++V +++ R+ PQ+ VD + +++ N K +N G +
Sbjct: 1015 EKAKVEENKNIENDRKENNTTTSPQEKVDSTSRGSGVIDYSFN-----LKEHENPTGVKQ 1069
Query: 119 VGRKPPRRQHKIQKEQ-WN 136
+ R +++ E WN
Sbjct: 1070 IRENAEIRDKRVKVETAWN 1088
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
Length = 2474
Score = 32.0 bits (71), Expect = 9.5, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Query: 13 LGGGRDRDDREEEQRSRDERSRSSWAEVVSGDQDRDAQERRRHSQHNNQWSV--QEESQV 70
LGGG+D + EE+++ +S + + ++ + + N + S+ QEE ++
Sbjct: 1025 LGGGKDNEVTEEQRKIDSLMQENSGLQQTLESVRAEKEQLKMDLKENIEMSIENQEELRI 1084
Query: 71 WQDEGSRPSRRPQKAVDEGHEKNEGFNWNQNNWNR-EEKREDNNDGWETVGRKPPRRQHK 129
+DE R + D EK + + Q + EEK E+ N + ++ Q
Sbjct: 1085 LRDELKRQQEVAAQEKDHATEKTQELSRTQERLAKTEEKLEEKNQKLQETQQQLLSTQEA 1144
Query: 130 IQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELA 165
+ K Q + E+ N + +E + ELA
Sbjct: 1145 MSKLQAKVIDMESLQNEFRNQGLALERVETEKLELA 1180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,998,141
Number of Sequences: 539616
Number of extensions: 8519428
Number of successful extensions: 26368
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 23478
Number of HSP's gapped (non-prelim): 2438
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)