Query 045723
Match_columns 433
No_of_seqs 145 out of 205
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09412 XendoU: Endoribonucle 100.0 1.8E-98 4E-103 729.9 21.1 260 159-429 1-265 (265)
2 KOG2849 Placental protein 11 [ 100.0 1.2E-87 2.6E-92 669.3 20.1 282 128-431 98-388 (388)
3 PF14436 EndoU_bacteria: Bacte 95.2 0.29 6.2E-06 42.9 10.8 115 305-431 2-128 (128)
4 KOG2849 Placental protein 11 [ 67.2 1.6 3.4E-05 45.9 -0.4 66 327-400 2-67 (388)
5 TIGR01446 DnaD_dom DnaD and ph 30.7 63 0.0014 25.3 3.3 45 232-278 4-49 (73)
6 cd05030 calgranulins Calgranul 28.8 2.5E+02 0.0054 23.1 6.7 69 223-291 7-80 (88)
7 COG3623 SgaU Putative L-xylulo 21.7 32 0.0007 34.9 0.1 58 257-329 154-211 (287)
8 PF07797 DUF1639: Protein of u 20.4 53 0.0012 25.7 1.1 17 114-130 9-25 (50)
9 PF06757 Ins_allergen_rp: Inse 20.3 1.1E+02 0.0024 28.5 3.4 64 226-292 20-84 (179)
10 PF10673 DUF2487: Protein of u 18.9 52 0.0011 30.5 0.9 10 304-313 81-90 (142)
No 1
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=100.00 E-value=1.8e-98 Score=729.92 Aligned_cols=260 Identities=48% Similarity=0.905 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHHHHhhcccCCCCCCCceEEecCCCcccccCCCcccCCcccccCccccC-chhHHHHHHhhhccCCCC
Q 045723 159 PSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFR-KPTYSRFCSLLDNYNPNA 237 (433)
Q Consensus 159 ~t~~El~~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk~~~~~~D~A~~pLFs~V~e~~~~-~PTy~afiaLlDNY~~~t 237 (433)
+|++||+.|+ ++||++|+||++|+.||+||+|..+...+..|.|+.|||++||+++|+ +|||++|++|||||++++
T Consensus 1 ~t~~el~~~~---~~Lw~~D~Nr~~~~~~~~ln~Q~~~~~~~~~D~A~~pLf~~V~~~~~~~~pTy~af~~LlDNY~~~t 77 (265)
T PF09412_consen 1 VTDDELSNLS---QELWDLDENRATPGSDYTLNLQGKTSSSSTVDNAPDPLFTYVNESLLKSKPTYAAFIALLDNYERDT 77 (265)
T ss_dssp -B-HHHHHHH---HHHHHT-TT---BTTTEEE---SBTT---------S-SEEEE-HHHHTTTSTHHHHHHHHHHTTSSS
T ss_pred CCHHHHHHHH---HHHHHhhhccCCCCCCEEEecCCCcCCCCCCCCCCCCccccCCHHHhcCCCHHHHHHHHHhcccccc
Confidence 3566666665 699999999999999999999976666677999999999999999999 999999999999999999
Q ss_pred CCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCCCCCCCCCcceeeeeeee
Q 045723 238 GHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIK 317 (433)
Q Consensus 238 g~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~g~~dSSGFEHVFVGE~K 317 (433)
|++|++|++|++|+++|||+||+|+|||.||+||++||+++.|+.+||++|++|||++|+|+++..||||||||||||+|
T Consensus 78 g~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~iWF~~Y~R~~~~~dSSGFEHVFvGE~k 157 (265)
T PF09412_consen 78 GVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKNIWFGLYSRGSGGLDSSGFEHVFVGEIK 157 (265)
T ss_dssp STTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHTS-B-SSTTS--B-HHHHHTTS-SS
T ss_pred CCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCccccCCCCCCCCcccceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHHHHHHHhhh
Q 045723 318 QAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 397 (433)
Q Consensus 318 ~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE~ALYTvCF 397 (433)
++ +|+|||||||||++|++|+|||+||+.++..+. | .||+|||+|+++.||+||||||||||||||||||||
T Consensus 158 ~~---~V~G~HNWi~fy~~Ek~g~~dY~Gy~~~~~~~~-~----~vlt~qf~w~~~~K~~gs~fiGtSPEfE~ALyT~cF 229 (265)
T PF09412_consen 158 GG---EVSGFHNWIQFYLQEKSGNVDYKGYIKKRDWGD-P----DVLTLQFSWNGYYKPVGSFFIGTSPEFEFALYTVCF 229 (265)
T ss_dssp TT---S------HHHHHHHHHTTSEEEEEE---SSS--------TEEEEEEEETTBE---EEEE-S--HHHHHHHHHHHH
T ss_pred CC---eEeeeEHHHHHHHHHhcCCceEEEEEecCCCCC-C----cEEEEEEEECCeeccCCceEecCCHHHHHHHHHHHH
Confidence 63 899999999999999999999999999887654 3 499999999999999999999999999999999999
Q ss_pred hccCCC-ceEEeCCeeEEEEEEecC---CeEeeecc
Q 045723 398 FVGGED-NYVQLGPYPVNIKCYRFG---DRIGSVFP 429 (433)
Q Consensus 398 l~~~e~-~~v~l~g~~v~I~ty~~g---~~IgSaYP 429 (433)
|++++. |+|+|+||+++|+||+++ ++||||||
T Consensus 230 l~~~~~~c~v~l~g~~~~I~ty~~~~~~~~igtaYP 265 (265)
T PF09412_consen 230 LTRPERNCPVSLGGYPVNIQTYTWGYNGRYIGTAYP 265 (265)
T ss_dssp HT-SSSEEEEEETTEEEEEEE---EEETTEEEEEEE
T ss_pred hhcCCCceEEEECCEEEEEEEeecCCCCCEEeeeCC
Confidence 998664 999999999999999885 48999999
No 2
>KOG2849 consensus Placental protein 11 [General function prediction only]
Probab=100.00 E-value=1.2e-87 Score=669.32 Aligned_cols=282 Identities=42% Similarity=0.758 Sum_probs=260.7
Q ss_pred ccchHHhhccCCCCCCccccccccccCCCCCCCHHHHHHHHHHHHHHhhcccCCCCCCCceEEecCCCcccccCCCcccC
Q 045723 128 HKIQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQG 207 (433)
Q Consensus 128 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~El~~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk~~~~~~D~A~~ 207 (433)
.++-+.+|.+|.++++- ...|++||+.|++ +||..|.||+.++ .+.+|+|..+.+....|.||.
T Consensus 98 ~~~~~~~~~~~~~s~~~------------~~~t~del~tl~~---kl~~~dtn~~~~~-~~~~n~qg~tvsg~~~d~a~~ 161 (388)
T KOG2849|consen 98 VISFGSTVKAYFQSASS------------GGSTDDELQTLSE---KLYGDDTNRALPA-LIKVNLQGRTVSGDKTDRAPA 161 (388)
T ss_pred ccccceeeeeeeeeCCC------------CCCChHHHHHHHH---hhhhhhcccccch-hhhhhhcCccccccccccccc
Confidence 45578899999988762 5568899999996 8999999999765 667888855566679999999
Q ss_pred CcccccCccccCc-hhHHHHHHhhhccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 045723 208 SLFSWLSDDVFRK-PTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKR 286 (433)
Q Consensus 208 pLFs~V~e~~~~~-PTy~afiaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~ 286 (433)
|||+.|++.+|++ |||+.||.|||||+++||+.|++|++|++|+.+||++||.|.|||++|.||+.|+.++.++.+|++
T Consensus 162 ~Lft~v~e~Lf~K~pt~~~~~~L~dNy~~dtg~~E~~t~ee~~Eq~~Fl~~vm~t~vmk~l~~fl~~k~~~s~~~~~f~~ 241 (388)
T KOG2849|consen 162 NLFTTVDESLFRKQPTYLLFINLLDNYNRDTGVAEHVTAEERQEQGAFLDEVMTTRVMKELYRFLVHKDVVSNSYNEFRR 241 (388)
T ss_pred cchhhhHHHHhhcCchHHHHHHHHhhccccccccCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcCCCcHHHHHH
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCCCcceeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEE
Q 045723 287 TISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTV 366 (433)
Q Consensus 287 ~L~~iWF~lYsR~~g~~dSSGFEHVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltl 366 (433)
+|++|||++|+|++|.++|||||||||||+|++ +|+|||||||||.+||+|++||+||+..+..|+ .+..+++|
T Consensus 242 ~L~~LWF~~YsRg~g~~gSSgFEHVF~gEiK~g---~v~G~HnWvrfy~eek~~~~DYkg~~~~~~~~~---~~~i~~~i 315 (388)
T KOG2849|consen 242 LLKELWFGLYSRGKGPGGSSGFEHVFSGEIKDG---EVDGFHNWVRFYDEEKAGNFDYKGYLTHRMQGD---ENLILLTI 315 (388)
T ss_pred HHHHhcceecccCCCCCCCccceEEEEEeeccC---cccceeeeEEEeeecccCccceeeeeeecccCc---ccceeEEE
Confidence 999999999999999999999999999999984 899999999999999999999999999887664 44567789
Q ss_pred EEEECCeeeeeceEEecCChHHHHHHHHhhhhccC--CCceEEeCCeeEEEEEEecC------CeEeeecccC
Q 045723 367 QFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGG--EDNYVQLGPYPVNIKCYRFG------DRIGSVFPIA 431 (433)
Q Consensus 367 qF~W~g~~K~vGS~FIGTSPEFE~ALYTvCFl~~~--e~~~v~l~g~~v~I~ty~~g------~~IgSaYP~~ 431 (433)
||+|+|++||||||||||||||||||||||||+++ +.|+|+|++|+++|+||+++ ++||||||.+
T Consensus 316 qf~w~G~lKpvgs~fvGtSPEfd~ALYT~CFlar~~~e~Chiqlg~yp~~V~sy~~~~~~~gk~~igtaYP~~ 388 (388)
T KOG2849|consen 316 QFTWNGLLKPVGSFFVGTSPEFDFALYTMCFLARPNGETCHIQLGNYPLTVTSYEWDCGDNGKTYIGTAYPGS 388 (388)
T ss_pred EEEeccccccccceEeccChhHHHHHHHHHHhhcCCCCCCceeecCcceeEEEEEeecccCCcceEEEeccCC
Confidence 99999999999999999999999999999999976 78999999999999999986 2999999964
No 3
>PF14436 EndoU_bacteria: Bacterial EndoU nuclease
Probab=95.16 E-value=0.29 Score=42.92 Aligned_cols=115 Identities=24% Similarity=0.244 Sum_probs=66.5
Q ss_pred CCCcceeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeee---e-eceE
Q 045723 305 SSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILK---S-VSTT 380 (433)
Q Consensus 305 SSGFEHVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K---~-vGS~ 380 (433)
+.+|+|||-||.+..+ ..|+|+|+=-.|+. .-+++...-. .| ...-|.++.+.-.+..+ . ..+|
T Consensus 2 ~~~~~Hi~~Ge~~~~~-~~i~G~H~~~~~~~--------~~~~i~~~t~--~~-~~~GVy~~~v~i~~~~~~~~~~~st~ 69 (128)
T PF14436_consen 2 QNAFEHIFCGEINRQG-KGIGGGHNQGRFNQ--------NGVKIISETE--PP-NPNGVYTAKVEIPGPDGNGKGKKSTF 69 (128)
T ss_pred cccccccEEeccccCC-CcceeecCCCcccc--------ccceEeeccc--cc-CCCCeEEEEEEEecCCCCcCCCCCEE
Confidence 4689999999999742 47999999333332 3333332211 12 22346555555544333 3 4444
Q ss_pred E-ecCChHHHHHHHHhhhhccC------CCceEEeCCeeEEEEEEecC-CeEeeecccC
Q 045723 381 L-VGVSPEFEIALYTLCFFVGG------EDNYVQLGPYPVNIKCYRFG-DRIGSVFPIA 431 (433)
Q Consensus 381 F-IGTSPEFE~ALYTvCFl~~~------e~~~v~l~g~~v~I~ty~~g-~~IgSaYP~~ 431 (433)
| ---|++-=+..-+-+|-.+. ..|-+.....-+.|..|.-. ..|.||||+.
T Consensus 70 FP~~ws~~~I~~~i~~a~~n~~~~~~~~~~~~~~~~~~Gv~i~v~~~~~G~I~t~yP~y 128 (128)
T PF14436_consen 70 FPKNWSDEKILDEIQEAYKNKYSVPRRNGNCWVGGTSSGVKIEVYVDKDGKIITAYPDY 128 (128)
T ss_pred CCccCCHHHHHHHHHHHHhCCCcceecCCCEEEEEecCCEEEEEEEeCCCCEEEeCCCC
Confidence 4 45588887777777775531 22322222223555666666 4999999973
No 4
>KOG2849 consensus Placental protein 11 [General function prediction only]
Probab=67.16 E-value=1.6 Score=45.87 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=53.7
Q ss_pred ehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHHHHHHHhhhhcc
Q 045723 327 FHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVG 400 (433)
Q Consensus 327 fHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE~ALYTvCFl~~ 400 (433)
+-||+-||-++..|.++|.|+.... ...+|.++|.-.--.--..++-.--||+|++|.||.+.+..
T Consensus 2 ~~~~~a~~g~r~p~~~~~~~~~~~~--------~~~vis~~~~~~~~~d~~~~~~~~~~~t~~~~~~~saa~~~ 67 (388)
T KOG2849|consen 2 FANWVAFYGQRNPGKFNYHGWFTAL--------NGIVISLQFVLGSDEDLETSFPLPQSPTFEFAAYTSAALPN 67 (388)
T ss_pred ccccccccCCCCccccccchhhhhh--------cCceeeeeeccCChHHhccCCCCCCCCcccHHHHhhhhccC
Confidence 4589999999999999999996432 24588888875555555678888999999999999999874
No 5
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=30.72 E-value=63 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=34.0
Q ss_pred ccCCCCCCCCcCChHHHHHHHHHHHHH-HcCHHHHHHHHHHHHcCCCC
Q 045723 232 NYNPNAGHKEVVTSEEKQEQAAFIEEI-SRTAPIKYLHKYLSAKGIVS 278 (433)
Q Consensus 232 NY~~~tg~~E~vT~eE~~E~~~FLdai-~~T~VMk~a~~fL~~Kg~~~ 278 (433)
-|+...|. .+|+.|.+.+..+++.. +.+.|+..|.++.+.+|..+
T Consensus 4 ~~e~~~gr--~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~~~~~ 49 (73)
T TIGR01446 4 FFEENFGR--MLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSNNKAN 49 (73)
T ss_pred HHHHHhCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 34444443 47899999999999886 56899999999988876543
No 6
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=28.84 E-value=2.5e+02 Score=23.09 Aligned_cols=69 Identities=10% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHhhhccCCCCCCCCcCChHHHHHHHH-HHHHHHc----CHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Q 045723 223 YSRFCSLLDNYNPNAGHKEVVTSEEKQEQAA-FIEEISR----TAPIKYLHKYLSAKGIVSGNYQDFKRTISSL 291 (433)
Q Consensus 223 y~afiaLlDNY~~~tg~~E~vT~eE~~E~~~-FLdai~~----T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~i 291 (433)
+..++.+|-.|....|..-.+|.+|+..+-. -+...+. ..-+..+++-+-..+-=.-+..+|...+..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567788888888888888899888765442 2222232 2333444433322111123688998887765
No 7
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=32 Score=34.94 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=43.4
Q ss_pred HHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCCCCCCCCCcceeeeeeeecCCCceeeeehh
Q 045723 257 EISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHN 329 (433)
Q Consensus 257 ai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~g~~dSSGFEHVFVGE~K~~Gg~~VsGfHN 329 (433)
+||.|+.|...-+||.-... +..=||..|.--+ .-|+|-.=.-.|+.. |-.+|.++|-
T Consensus 154 EiMDtpfm~sIsk~~~~~~~-----------I~sP~f~vYPDiG---Nlsaw~ndv~~El~l-G~~~I~aiHl 211 (287)
T COG3623 154 EIMDTPFMNSISKWLKYDKY-----------INSPWFTVYPDIG---NLSAWNNDVQSELQL-GIDKIVAIHL 211 (287)
T ss_pred eecccHHHHHHHHHHHHHHH-----------hCCCcEEecCCcc---cHhhhhhhHHHHHHc-CcCceEEEEe
Confidence 58999999988888876443 3445999998643 458888777788876 3458999985
No 8
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=20.36 E-value=53 Score=25.70 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=13.4
Q ss_pred CccccccCCCCCCcccc
Q 045723 114 DGWETVGRKPPRRQHKI 130 (433)
Q Consensus 114 dgw~tvg~k~~~~~~k~ 130 (433)
|=+.-.|.|||+||+|-
T Consensus 9 Df~am~G~kpprRPkKR 25 (50)
T PF07797_consen 9 DFLAMTGSKPPRRPKKR 25 (50)
T ss_pred HHHHHhCCCCCCCCCcc
Confidence 45677899999999854
No 9
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=20.33 E-value=1.1e+02 Score=28.48 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=40.7
Q ss_pred HHHhhhcc-CCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc
Q 045723 226 FCSLLDNY-NPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLW 292 (433)
Q Consensus 226 fiaLlDNY-~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iW 292 (433)
+.+|..+| ..+..+.+.+.--.-.+-......+.+++-++.+.+||...|+ |...+.+.+..++
T Consensus 20 i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~gl---dv~~~i~~i~~~l 84 (179)
T PF06757_consen 20 IQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKALLDYLESAGL---DVYYYINQINDLL 84 (179)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCCC---CHHHHHHHHHHHH
Confidence 55666666 3332222222211222345666778899999999999999998 4556677777764
No 10
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=18.94 E-value=52 Score=30.47 Aligned_cols=10 Identities=50% Similarity=0.786 Sum_probs=8.6
Q ss_pred CCCCcceeee
Q 045723 304 CSSAFEHVFV 313 (433)
Q Consensus 304 dSSGFEHVFV 313 (433)
-++||.|||+
T Consensus 81 ~~~GFkhV~~ 90 (142)
T PF10673_consen 81 KESGFKHVFY 90 (142)
T ss_pred HhcCCcEEEE
Confidence 4689999998
Done!