Query 045723
Match_columns 433
No_of_seqs 145 out of 205
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c1w_A Endou protein, xendou; 100.0 1E-100 4E-105 751.8 23.2 270 157-432 5-284 (292)
2 2h85_A Putative ORF1AB polypro 95.7 0.013 4.5E-07 58.8 6.0 116 306-431 232-347 (347)
3 2kj9_A Integrase; DNA_BRE_C su 52.3 30 0.001 27.4 6.1 63 218-283 27-102 (118)
4 2gti_A Replicase polyprotein 1 45.1 10 0.00035 38.3 2.5 104 306-419 259-362 (370)
5 4e0h_A Mitochondrial FAD-linke 41.9 77 0.0026 26.1 7.1 73 213-291 2-78 (106)
6 2kj5_A Phage integrase; GFT PS 39.7 43 0.0015 25.8 5.0 59 221-282 26-97 (116)
7 2kj8_A Putative prophage CPS-5 35.6 31 0.0011 27.1 3.6 64 219-285 23-99 (118)
8 2kkv_A Integrase; protein stru 30.1 33 0.0011 26.9 2.9 61 218-281 23-96 (121)
9 1id3_B Histone H4; nucleosome 27.1 81 0.0028 26.1 4.9 71 217-296 28-98 (102)
10 2khq_A Integrase; all-alpha, s 26.8 44 0.0015 25.3 3.0 61 219-282 21-93 (110)
11 3lys_A Prophage PI2 protein 01 26.3 69 0.0024 24.8 4.1 60 219-281 25-96 (112)
12 2oxo_A Integrase; DNA-binding 26.3 56 0.0019 23.7 3.4 60 220-282 21-92 (103)
13 2kiw_A INT protein; alpha, str 25.6 66 0.0023 24.4 3.8 37 242-281 43-89 (111)
14 2i5u_A DNAD domain protein; st 25.3 83 0.0028 24.6 4.4 47 229-277 4-58 (83)
15 2kkp_A Phage integrase; SAM-li 24.2 67 0.0023 24.5 3.6 21 262-282 80-100 (117)
16 2kd1_A DNA integration/recombi 24.1 42 0.0014 25.9 2.4 60 219-281 24-97 (118)
17 2yfw_B Histone H4, H4; cell cy 22.8 1.2E+02 0.0041 25.0 5.1 70 218-296 30-99 (103)
18 3nrw_A Phage integrase/site-sp 22.3 54 0.0018 25.9 2.8 40 241-283 52-102 (117)
19 2zc2_A DNAD-like replication p 21.2 25 0.00084 27.1 0.5 50 227-278 4-54 (78)
20 1tzy_D Histone H4-VI; histone- 21.1 1.3E+02 0.0045 24.7 5.0 70 218-296 30-99 (103)
21 2khv_A Phage integrase; soluti 21.0 54 0.0019 25.2 2.5 55 222-279 23-89 (106)
No 1
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1
Probab=100.00 E-value=1.2e-100 Score=751.77 Aligned_cols=270 Identities=39% Similarity=0.714 Sum_probs=245.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCCCCCceEEecCCCc-----ccccCCCcccCCcccccCccccCc-hhHHHHHHhh
Q 045723 157 LEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGK-----KAYQKDDMAQGSLFSWLSDDVFRK-PTYSRFCSLL 230 (433)
Q Consensus 157 ~~~t~~El~~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk-----~~~~~~D~A~~pLFs~V~e~~~~~-PTy~afiaLl 230 (433)
..+|++||+.|+ ++||++|+||+.|++||+||+|..+ ++.+..|.||.|||++||+++|++ |||++|++||
T Consensus 5 ~~vtd~el~~l~---~~Lw~~D~Nr~~~~~d~~lnlQ~~~~~~~~~~~~~~D~A~~pLF~~V~~~~l~~~pTy~~f~~Ll 81 (292)
T 2c1w_A 5 RGQLNHELSKLF---NELWDADQNRMKSGKDYRISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKSRKTFATFISLL 81 (292)
T ss_dssp -CCBCHHHHHHH---HHHHHTCTTCCCBTTTEEECCCSBSSCC---------CCCSCSEEEECHHHHTTTSTHHHHHHHH
T ss_pred ccCCHHHHHHHH---HHHHHhhcccCCCCCCEEEecCCCccccccccCCCCCCCCCccccccCHHHhcCCCHHHHHHHHH
Confidence 457889888886 5999999999999999999999655 345789999999999999999977 9999999999
Q ss_pred hccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCC-CCCCCCCcc
Q 045723 231 DNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGG-TSSCSSAFE 309 (433)
Q Consensus 231 DNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~-g~~dSSGFE 309 (433)
|||+++||++|++|++|++|+++|||+||+|+|||.||+||++||++++|+.+||++|++|||++|+|++ +..||||||
T Consensus 82 DNY~~~tg~~E~vT~~E~~E~~~FLd~i~~T~vmk~a~~fL~~kg~~~~d~~~Fk~~L~~iWF~~YsR~~g~~~dSSGFE 161 (292)
T 2c1w_A 82 DNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFE 161 (292)
T ss_dssp HHHHHCCSCSSCCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHH
T ss_pred hhhccccCCCCcCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 478999999
Q ss_pred eeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHH
Q 045723 310 HVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFE 389 (433)
Q Consensus 310 HVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE 389 (433)
||||||+|++ ++|+|||||||||++|++|+|||+||+.+.. +..||++++||+|||+|+|+.||+||||||||||||
T Consensus 162 HVFvGE~k~g--~~V~G~HNWi~fY~~Ek~g~idY~Gy~~~~~-~~~~~~~~~vl~~qf~w~g~~K~~gs~fvGtSPEfE 238 (292)
T 2c1w_A 162 HVFVGESKRG--QEMMGLHNWVQFYLQEKRKNIDYKGYVARQN-KSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFE 238 (292)
T ss_dssp HHTTSCSSSS--CSCCCCCCHHHHHHHHHTTCEEEEEECCCSS-SCCCCTTCSEEEEEEEETTBCCCCEEEECSCCHHHH
T ss_pred eEEEEEeecC--CEEEEEehHHHHHHHHhcCCCcccceeeccc-ccCCCCCCcEEEEEEEeCCccccccceEeeCChHHH
Confidence 9999999962 4899999999999999999999999997654 356788899999999999999999999999999999
Q ss_pred HHHHHhhhhccCCC---ceEEeCCeeEEEEEEecCCeEeeecccCC
Q 045723 390 IALYTLCFFVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPIAE 432 (433)
Q Consensus 390 ~ALYTvCFl~~~e~---~~v~l~g~~v~I~ty~~g~~IgSaYP~~~ 432 (433)
|||||||||++++. |+|+|+|++++|+||++|++||||||++.
T Consensus 239 lALYTvCFl~~~~~~~~c~v~l~g~~~~I~ty~~G~~I~sayP~~~ 284 (292)
T 2c1w_A 239 FALYTIVFLASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPVLL 284 (292)
T ss_dssp HHHHHHHHHTCSSSEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHhhCCCCCccceEEECCEEEEEEEEeCCCEEEEeccccc
Confidence 99999999999876 99999999999999999999999999864
No 2
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48 d.294.1.2 PDB: 2ozk_A 2rhb_A
Probab=95.66 E-value=0.013 Score=58.78 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=82.8
Q ss_pred CCcceeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCC
Q 045723 306 SAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVS 385 (433)
Q Consensus 306 SGFEHVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTS 385 (433)
=||||||.|+.++ +.|-|+|-=|-.|+.-+.|.+.-.-|+.. |+.-+-..+...=++..|.+-|..==.-
T Consensus 232 ~~fEHvvyGD~s~---ttiGGlHllIsl~r~~~~~~l~~~efv~~-------Dst~~~~~Vt~~~~~SsK~VCTv~DllL 301 (347)
T 2h85_A 232 YAFEHIVYGDFSH---GQLGGLHLMIGLAKRSQDSPLKLEDFIPM-------DSTVKNYFITDAQTGSSKCGCSVIDLLL 301 (347)
T ss_dssp SCHHHHTTCBCSS---SBCBCCCBHHHHHHHHHHSCEEEEESSCS-------CCSSEEEEEEETTTCCEEEEEEEBCCCH
T ss_pred cCcceEEEeccCC---CeeccchhhhhhhhhhcccccchhhhccC-------CCceeEEEEEecCCCceeceeEEEEEeh
Confidence 3999999999985 48999999999999999999998777621 2211334555566788888888765556
Q ss_pred hHHHHHHHHhhhhccCCCceEEeCCeeEEEEEEecCCeEeeecccC
Q 045723 386 PEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIA 431 (433)
Q Consensus 386 PEFE~ALYTvCFl~~~e~~~v~l~g~~v~I~ty~~g~~IgSaYP~~ 431 (433)
|.|.--|=++--=+-.+-..|.|+-.+++.-.|..+..|.|+||.+
T Consensus 302 DDfv~ilKsl~~svvSKV~~V~ID~k~~rfMLWckD~~v~TFYPqL 347 (347)
T 2h85_A 302 GDFVEIIKSQDLSVISKVVKVTIDYAEISFMLWCKDGHVETFYPKL 347 (347)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEEETTEEEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHhcCccceeEEEEEEccceeEEEEEEeCCCceeeeeccC
Confidence 6665332221000001113688998889988887778999999975
No 3
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=52.27 E-value=30 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=41.4
Q ss_pred cCchhHHHHHHhhhccC-CCCCCC--CcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCHHH
Q 045723 218 FRKPTYSRFCSLLDNYN-PNAGHK--EVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNYQD 283 (433)
Q Consensus 218 ~~~PTy~afiaLlDNY~-~~tg~~--E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~~e 283 (433)
++..|+..+...+.+|- +..|.. ..+|+. .+..||+.+.+. .+++.+++|.+..|++..++..
T Consensus 27 ~~~~T~~~y~~~l~~~i~p~~G~~~l~~It~~---~i~~~l~~l~~~~~~~t~~~~~~~L~~if~~Av~~g~i~~NP~~ 102 (118)
T 2kj9_A 27 WSEDYQRSVWTRLETYLFPDIGNKDIAELDTG---DLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAVQQKMIRFNPAY 102 (118)
T ss_dssp SCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHH---HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSSSSCHHH
T ss_pred CCHHHHHHHHHHHHhccccccCCCCHHHCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHcCCcccCchH
Confidence 34568888888887653 434432 234554 445677777543 4677888999999998877753
No 4
>2gti_A Replicase polyprotein 1AB; MHV, NSP15, F307L, viral protein; 2.15A {Murine hepatitis virus} SCOP: c.66.1.48 d.294.1.2 PDB: 2gth_A
Probab=45.09 E-value=10 Score=38.31 Aligned_cols=104 Identities=22% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCcceeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCC
Q 045723 306 SAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVS 385 (433)
Q Consensus 306 SGFEHVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTS 385 (433)
=|||||.-|+..+ +.|-|+|-=|-.|+.-+.+.+.-+-+... |+.-+-..+...=++..|.|-+..==.-
T Consensus 259 ~~fEHIVYGd~sk---~~iGGlHlLIglvR~~~~~~L~~~ef~~~-------dstv~s~~Vt~~~~~SsK~VCTv~DlLL 328 (370)
T 2gti_A 259 YAFEHVVYGSFNQ---KIIGGLHLLIGLARRQQKSNLVIQEFVTY-------DSSIHSYLITDENSGSSKSVCTVIDLLL 328 (370)
T ss_dssp GCHHHHTTCBCSS---SBCBCCCBHHHHHHHTTTSCEEEEESSCS-------CCSEEEEEEEETTTTEEEEEEEEECCCH
T ss_pred cCcceEEEeccCC---cccchhHHHHHHHHHhhccceeeeecccC-------CCceeeEEEEecCCCchhceeeeEEeeh
Confidence 3999999999976 38999999999999999999988776531 1111113333334678888887753333
Q ss_pred hHHHHHHHHhhhhccCCCceEEeCCeeEEEEEEe
Q 045723 386 PEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYR 419 (433)
Q Consensus 386 PEFE~ALYTvCFl~~~e~~~v~l~g~~v~I~ty~ 419 (433)
..|---|=++=.=+-.+-..|.++=..++.-.|.
T Consensus 329 DDFV~IlKs~dlsvvSKVv~V~iD~k~~rfMLWc 362 (370)
T 2gti_A 329 DDFVDIVKSLNLKCVSKVVNVNVDFKDFQFMLWC 362 (370)
T ss_dssp HHHHHHHTTCCCCSSSCCEEEEETTEEEEEEEET
T ss_pred HhHHHHHHhcCcceeeeEEEEEEeceeEEEEEEe
Confidence 3332222211000011223566776666655543
No 5
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=41.93 E-value=77 Score=26.06 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=48.7
Q ss_pred cCccccCchhHHHHHHhhhccCCCCCCCCcCChHHHHHHHHHHHHHHc---CHHH-HHHHHHHHHcCCCCCCHHHHHHHH
Q 045723 213 LSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISR---TAPI-KYLHKYLSAKGIVSGNYQDFKRTI 288 (433)
Q Consensus 213 V~e~~~~~PTy~afiaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai~~---T~VM-k~a~~fL~~Kg~~~~d~~eFK~~L 288 (433)
+|.+.+-.+|...|-.|--+| ++..|+++++....||..|-. =... +.+.++|...-..-.|..+|..+|
T Consensus 2 ~d~e~lGp~~W~~lHtia~~y------P~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl 75 (106)
T 4e0h_A 2 MDVEQLGRSSWTLLHSVAASY------PAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWM 75 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHTS------CSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred CCHHHccHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHH
Confidence 566667677777777776666 466789999999999987754 2222 334456654433334678888887
Q ss_pred Hhh
Q 045723 289 SSL 291 (433)
Q Consensus 289 ~~i 291 (433)
..+
T Consensus 76 ~~~ 78 (106)
T 4e0h_A 76 CEA 78 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 6
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=39.71 E-value=43 Score=25.75 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=34.4
Q ss_pred hhHHHHHHhhhccC-CCCCC--CCcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCHH
Q 045723 221 PTYSRFCSLLDNYN-PNAGH--KEVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNYQ 282 (433)
Q Consensus 221 PTy~afiaLlDNY~-~~tg~--~E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~~ 282 (433)
.|+..+...+++|- +..|. -..+|+.+ +..|++.+.+. .+++.+++|++..|++..++.
T Consensus 26 ~T~~~y~~~l~~~i~~~~g~~~l~~it~~~---i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 26 KHPNIVRSRIEKDIKPAIGSLKVEDVKPRH---IDDVLKAVMKRGAPSIANDTLRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp SCHHHHHHHHHHTTSCSGGGSBSSSCCHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTSCSSCGG
T ss_pred ccHHHHHHHHHHHhHHHHCCCcHhhCCHHH---HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHcCccccCch
Confidence 56666666665543 32332 22355544 45566555431 467788888898888876654
No 7
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=35.57 E-value=31 Score=27.08 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=39.3
Q ss_pred CchhHHHHHHhhhcc-CCCCCC--CCcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCHHHHH
Q 045723 219 RKPTYSRFCSLLDNY-NPNAGH--KEVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNYQDFK 285 (433)
Q Consensus 219 ~~PTy~afiaLlDNY-~~~tg~--~E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~~eFK 285 (433)
+..|+..+...+.+| .+..|. -..+|+.+ +..|++.+.+. .+++.+++|.+..|++..++..-.
T Consensus 23 ~~~T~~~y~~~l~~~i~~~lg~~~l~~It~~~---i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~~v 99 (118)
T 2kj8_A 23 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQ---LLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDL 99 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHH---HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSCCSHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHhcCCcHHHCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCcccCcHHHH
Confidence 345666666655554 222222 23455544 45677776643 467888999999999888876433
No 8
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=30.13 E-value=33 Score=26.91 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=35.6
Q ss_pred cCchhHHHHHHhhhccC-CCCCCC--CcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCH
Q 045723 218 FRKPTYSRFCSLLDNYN-PNAGHK--EVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNY 281 (433)
Q Consensus 218 ~~~PTy~afiaLlDNY~-~~tg~~--E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~ 281 (433)
++..|+..+...+.+|- +..|.. ..+|+.+ +..|++.+.+. .+++.+++|++..|++..++
T Consensus 23 ~~~~T~~~y~~~l~~~i~~~~g~~~l~~It~~~---i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~A~~~~~i~~NP 96 (121)
T 2kkv_A 23 WSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSH---LLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNP 96 (121)
T ss_dssp SCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGG---GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSCSCS
T ss_pred CCHHHHHHHHHHHHhhcCchhcCCCHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 34467777776666653 333322 2355544 34566555431 35677788888888876554
No 9
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=27.14 E-value=81 Score=26.15 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=52.1
Q ss_pred ccCchhHHHHHHhhhccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhccccc
Q 045723 217 VFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLY 296 (433)
Q Consensus 217 ~~~~PTy~afiaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lY 296 (433)
-+.+|+...++.- .|+ +.++.+=..+....|..+++ .|++.|..|....+.-+.+..+....|+.++|.+|
T Consensus 28 ~ip~~~I~Rlar~-------~Gv-~rIS~da~~~l~~~le~fi~-~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 28 GITKPAIRRLARR-------GGV-KRISGLIYEEVRAVLKSFLE-SVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp GSCHHHHHHHHHH-------TTC-CEECTTHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHH-------cCc-hhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 3556777765543 244 45566555566666655554 48899999999988877789999999999999999
No 10
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=26.82 E-value=44 Score=25.31 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=32.1
Q ss_pred CchhHHHHHHhhhccCCCCCC--CCcCChHHHHHHHHHHHHHHc--C--------HHHHHHHHHHHHcCCCCCCHH
Q 045723 219 RKPTYSRFCSLLDNYNPNAGH--KEVVTSEEKQEQAAFIEEISR--T--------APIKYLHKYLSAKGIVSGNYQ 282 (433)
Q Consensus 219 ~~PTy~afiaLlDNY~~~tg~--~E~vT~eE~~E~~~FLdai~~--T--------~VMk~a~~fL~~Kg~~~~d~~ 282 (433)
+..|+..+...+.++.+..|. -..+|+.+. ..|++.+.+ + .+++.+++|++..|++..++.
T Consensus 21 ~~~T~~~y~~~~~~~~~~~g~~~l~~it~~~i---~~~~~~l~~~~s~~t~~~~~~~l~~~~~~a~~~~~i~~NP~ 93 (110)
T 2khq_A 21 SESTKRHYESAYKHIKDHFRHKLLKDIKRTEY---QKFLNEYGLTHSYETIRKLNSYIRNAFDDAIHEGYVIKNPT 93 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHCcCCHhhCCHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 344555554444433222221 233555444 455555432 1 456777888888888776553
No 11
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=26.30 E-value=69 Score=24.83 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=33.1
Q ss_pred CchhHHHHHHhhhccCCCCCC--CCcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCH
Q 045723 219 RKPTYSRFCSLLDNYNPNAGH--KEVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNY 281 (433)
Q Consensus 219 ~~PTy~afiaLlDNY~~~tg~--~E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~ 281 (433)
+..|+..+...+....+..|. -..+|+.. +..|++.+.++ .+++.+++|.+..|++..++
T Consensus 25 ~~~T~~~y~~~~~~i~p~~g~~~l~~It~~~---i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~Av~~g~i~~NP 96 (112)
T 3lys_A 25 DEMTYKGYEQTLKYLKTYMPNVLISEITASS---YQRALNKFAETHAKASTKGFHTRVRASIQCLIEEGRLQKDF 96 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCBTTTCCHHH---HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCSSCT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCHHhCCHHH---HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHCCCcccCc
Confidence 345666655555432222232 13455544 44566655442 46677788888888876553
No 12
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=26.25 E-value=56 Score=23.70 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=31.9
Q ss_pred chhHHHHHHhhhccCCCCCC--CCcCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCHH
Q 045723 220 KPTYSRFCSLLDNYNPNAGH--KEVVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNYQ 282 (433)
Q Consensus 220 ~PTy~afiaLlDNY~~~tg~--~E~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~~ 282 (433)
..|+..+...+.++.+..|. -..+|+.+ +..|++.+... .+++.+++|++..|++..++.
T Consensus 21 ~~T~~~y~~~~~~~~~~~g~~~l~~it~~~---i~~~~~~l~~~~~~~t~~~~~~~l~~~~~~a~~~~~i~~nP~ 92 (103)
T 2oxo_A 21 QKTLINYMSKIKAIRRGLPDAPLEDITTKE---IAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHV 92 (103)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCBGGGCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred hhHHHHHHHHHHHHHHHHCcCchhhCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 34555444444433222222 12355544 44566555431 456777888888888776654
No 13
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=25.59 E-value=66 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=22.5
Q ss_pred cCChHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHcCCCCCCH
Q 045723 242 VVTSEEKQEQAAFIEEISRT----------APIKYLHKYLSAKGIVSGNY 281 (433)
Q Consensus 242 ~vT~eE~~E~~~FLdai~~T----------~VMk~a~~fL~~Kg~~~~d~ 281 (433)
.+|+.. +..|++.+.+. .+++.+++|++..|++..++
T Consensus 43 ~It~~~---i~~~~~~l~~~~s~~t~~~~~~~lr~~~~~A~~~~~i~~nP 89 (111)
T 2kiw_A 43 TIKKHD---YQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLIKAMP 89 (111)
T ss_dssp GCCHHH---HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCSCCT
T ss_pred HcCHHH---HHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHhCChhhCc
Confidence 355544 45566655432 35677778888888776554
No 14
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.28 E-value=83 Score=24.63 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=35.9
Q ss_pred hhhccCCCCCCCCcCChHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHcCCC
Q 045723 229 LLDNYNPNAGHKEVVTSEEKQEQAAFIEEI--------SRTAPIKYLHKYLSAKGIV 277 (433)
Q Consensus 229 LlDNY~~~tg~~E~vT~eE~~E~~~FLdai--------~~T~VMk~a~~fL~~Kg~~ 277 (433)
|+.-|+.. |.. .+||-+.+.+..+++.+ +...++..|+++.+..|..
T Consensus 4 ~~~~~e~~-g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~ 58 (83)
T 2i5u_A 4 IRSIWENN-GFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR 58 (83)
T ss_dssp HHHHHHTT-TSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHh-CCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC
Confidence 34445544 223 78999999999999998 4678999999999888753
No 15
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=24.18 E-value=67 Score=24.47 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCCCCCHH
Q 045723 262 APIKYLHKYLSAKGIVSGNYQ 282 (433)
Q Consensus 262 ~VMk~a~~fL~~Kg~~~~d~~ 282 (433)
.+++.+++|++..|++..++.
T Consensus 80 ~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 80 VVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp HHHHHHHHHHHTTTSCSSCGG
T ss_pred HHHHHHHHHHHHCCCcccCcc
Confidence 356677777777777765543
No 16
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=24.08 E-value=42 Score=25.90 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=34.0
Q ss_pred CchhHHHHHHhhhcc-CCCCCC--CCcCChHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHHcCCCCCCH
Q 045723 219 RKPTYSRFCSLLDNY-NPNAGH--KEVVTSEEKQEQAAFIEEISRT-----------APIKYLHKYLSAKGIVSGNY 281 (433)
Q Consensus 219 ~~PTy~afiaLlDNY-~~~tg~--~E~vT~eE~~E~~~FLdai~~T-----------~VMk~a~~fL~~Kg~~~~d~ 281 (433)
+..|+..+...+.+| .+..|. -..+|+.. +..|++.+.+. .+++.+++|++..|++..++
T Consensus 24 ~~~T~~~y~~~l~~~i~~~~g~~~l~~it~~~---i~~~~~~l~~~g~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP 97 (118)
T 2kd1_A 24 GIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLH---MQNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNV 97 (118)
T ss_dssp CHHHHHHHHHHHTTTHHHHTTSSBGGGCCHHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTSCSSCT
T ss_pred CHHHHHHHHHHHHHhhhHhhCcCCHHhCCHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 446777776666664 232332 12355544 45566655421 35677778888888776554
No 17
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=22.78 E-value=1.2e+02 Score=24.99 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=47.3
Q ss_pred cCchhHHHHHHhhhccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhccccc
Q 045723 218 FRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLY 296 (433)
Q Consensus 218 ~~~PTy~afiaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lY 296 (433)
|-+|+...++.- .|+ +.++..=..+....|..+++ .|++.|..|....+.-..+..+....|+.+.|.+|
T Consensus 30 ip~~~I~Rlar~-------~G~-~rIs~~a~~~l~~vle~~~~-~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 30 ITKPAIRRLARR-------GGV-KRISGLIYEEVRNVLKTFLE-SVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp CCHHHHHHHHHH-------TTC-CEECTTHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHH-------cCc-cccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 556777766543 244 45555545555555555543 48889999999988877789999999999999999
No 18
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=22.35 E-value=54 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=26.2
Q ss_pred CcCChHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHHcCCCCCCHHH
Q 045723 241 EVVTSEEKQEQAAFIEEISRT-----------APIKYLHKYLSAKGIVSGNYQD 283 (433)
Q Consensus 241 E~vT~eE~~E~~~FLdai~~T-----------~VMk~a~~fL~~Kg~~~~d~~e 283 (433)
+.+|+.. +.+|++.+.+. ..++..++||+..|+++.++..
T Consensus 52 ~~it~~~---i~~y~~~l~~~~~s~~Ti~~~ls~lr~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 52 RELTGWK---LDEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp GGCCHHH---HHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSSCTTSGG
T ss_pred HHCCHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCcccCHHH
Confidence 4555554 45666655431 3677888999999988776643
No 19
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=21.23 E-value=25 Score=27.05 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHhhhccCCCCCCCCcCChHHHHHHHHHHHHH-HcCHHHHHHHHHHHHcCCCC
Q 045723 227 CSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEI-SRTAPIKYLHKYLSAKGIVS 278 (433)
Q Consensus 227 iaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai-~~T~VMk~a~~fL~~Kg~~~ 278 (433)
..|++.|+...|. .+|+-|.+.+..+++.. +...++..|.++.+..|..+
T Consensus 4 ~~l~~~~e~~~gr--~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s 54 (78)
T 2zc2_A 4 NALVEDFERELGR--MLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTN 54 (78)
T ss_dssp CHHHHHHHHHHTS--CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 3556666655554 47999999888888764 77899999999988777643
No 20
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=21.12 E-value=1.3e+02 Score=24.68 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=50.0
Q ss_pred cCchhHHHHHHhhhccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhccccc
Q 045723 218 FRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLY 296 (433)
Q Consensus 218 ~~~PTy~afiaLlDNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lY 296 (433)
|-+|+...++.-. |+ +.++..=..+....|..+++ .|++.|..|....+.-..+..+....|+.+.|.+|
T Consensus 30 ip~~~I~Rlar~~-------G~-~rIs~~a~~~l~~vle~~~~-~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 30 ITKPAIRRLARRG-------GV-KRISGLIYEETRGVLKVFLE-NVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp SCHHHHHHHHHHT-------TC-CEECTTHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHc-------Cc-cccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 5667777665532 43 45555444455555554443 47889999999988877789999999999999999
No 21
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=20.99 E-value=54 Score=25.17 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=32.2
Q ss_pred hHHHHHHhhhccC-CCCCC--CCcCChHHHHHHHHHHHHHHcC---------HHHHHHHHHHHHcCCCCC
Q 045723 222 TYSRFCSLLDNYN-PNAGH--KEVVTSEEKQEQAAFIEEISRT---------APIKYLHKYLSAKGIVSG 279 (433)
Q Consensus 222 Ty~afiaLlDNY~-~~tg~--~E~vT~eE~~E~~~FLdai~~T---------~VMk~a~~fL~~Kg~~~~ 279 (433)
|+..+...+++|- +..|. -..+|+.+ +..|++.+.+. .+++.+++|-+..|++..
T Consensus 23 t~~~~~~~~~~~i~p~~G~~~l~~It~~~---i~~~~~~l~~~~~~t~~~~~~~l~~i~~~Av~~~~i~~ 89 (106)
T 2khv_A 23 HADQWTNTIKTYCGPVIGPLSVQDVDTKL---IMKVLDPIWEQKPETASRLRGRIESVLDWATVRGYREG 89 (106)
T ss_dssp HHHHHHHHHHHHTHHHHTTSBSSSCCHHH---HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSCS
T ss_pred hHHHHHHHHHHhcccccCCccHHHcCHHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 8888877777764 22232 23456554 45667766532 345666677677777655
Done!