Query 045724
Match_columns 168
No_of_seqs 104 out of 215
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 1.5E-31 3.3E-36 195.9 8.9 95 42-139 1-97 (97)
2 PF07344 Amastin: Amastin surf 89.6 1.7 3.8E-05 33.9 6.9 90 3-94 65-155 (155)
3 cd07912 Tweety_N N-terminal do 88.8 2.3 4.9E-05 38.8 8.0 31 36-66 38-69 (418)
4 PF09788 Tmemb_55A: Transmembr 85.2 2.4 5.2E-05 36.3 5.7 66 56-139 176-243 (256)
5 PF05360 YiaAB: yiaA/B two hel 80.6 2.4 5.1E-05 27.7 3.2 44 80-138 2-45 (53)
6 PF04906 Tweety: Tweety; Inte 78.0 4.3 9.3E-05 36.7 5.0 29 39-67 22-50 (406)
7 PF05478 Prominin: Prominin; 72.7 17 0.00037 35.6 8.0 72 29-102 407-492 (806)
8 PTZ00201 amastin surface glyco 67.7 28 0.0006 28.6 7.0 95 29-143 67-166 (192)
9 PF07344 Amastin: Amastin surf 63.0 62 0.0013 25.1 8.0 92 28-142 54-150 (155)
10 KOG4433 Tweety transmembrane/c 60.9 14 0.0003 34.6 4.5 52 36-87 42-98 (526)
11 PF01284 MARVEL: Membrane-asso 59.5 66 0.0014 23.4 13.6 132 4-144 7-142 (144)
12 PF05478 Prominin: Prominin; 56.7 49 0.0011 32.4 7.8 25 72-96 139-163 (806)
13 KOG4684 Uncharacterized conser 54.1 20 0.00043 30.5 3.9 46 52-97 184-231 (275)
14 PTZ00201 amastin surface glyco 50.4 18 0.00039 29.7 3.2 95 5-102 79-178 (192)
15 PRK11383 hypothetical protein; 50.4 80 0.0017 25.0 6.6 25 77-102 10-34 (145)
16 PF11169 DUF2956: Protein of u 45.0 21 0.00046 26.6 2.5 21 72-92 82-102 (103)
17 KOG4016 Synaptic vesicle prote 42.5 2.1E+02 0.0046 24.2 12.1 111 29-152 59-172 (233)
18 PRK11383 hypothetical protein; 37.5 77 0.0017 25.0 4.7 47 77-138 73-119 (145)
19 PF00822 PMP22_Claudin: PMP-22 35.6 1E+02 0.0022 23.1 5.2 85 38-140 75-159 (166)
20 PF13903 Claudin_2: PMP-22/EMP 31.9 2.1E+02 0.0046 21.1 9.3 27 75-101 103-129 (172)
21 PF07019 Rab5ip: Rab5-interact 30.9 1.6E+02 0.0034 20.2 5.0 63 8-87 9-80 (81)
22 PF10267 Tmemb_cc2: Predicted 30.7 79 0.0017 28.8 4.3 46 37-82 338-383 (395)
23 KOG1292 Xanthine/uracil transp 29.6 78 0.0017 29.8 4.1 65 76-151 209-297 (510)
24 COG4682 Predicted membrane pro 28.9 88 0.0019 24.2 3.7 31 74-105 7-37 (128)
25 PF06800 Sugar_transport: Suga 24.8 2.2E+02 0.0047 24.6 5.8 75 34-108 42-127 (269)
26 PF13908 Shisa: Wnt and FGF in 24.3 60 0.0013 25.5 2.2 8 24-31 47-54 (179)
27 PF07271 Cytadhesin_P30: Cytad 24.2 1.9E+02 0.0042 25.2 5.3 68 77-144 9-95 (279)
28 COG4858 Uncharacterized membra 24.0 4.2E+02 0.0092 22.2 7.0 60 33-93 120-184 (226)
29 PF14798 Ca_hom_mod: Calcium h 23.3 1.2E+02 0.0027 25.8 4.0 64 32-106 13-76 (251)
30 PF12273 RCR: Chitin synthesis 22.6 67 0.0015 24.0 2.1 21 86-106 7-28 (130)
31 PF11085 YqhR: Conserved membr 21.5 91 0.002 25.3 2.7 31 122-152 67-97 (173)
32 PLN02392 probable steroid redu 20.8 59 0.0013 27.9 1.5 44 84-127 149-192 (260)
33 PF04103 CD20: CD20-like famil 20.5 21 0.00046 26.4 -1.1 87 9-107 5-94 (150)
34 PRK11403 hypothetical protein; 20.2 2.2E+02 0.0048 21.6 4.3 48 75-137 59-106 (113)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.97 E-value=1.5e-31 Score=195.89 Aligned_cols=95 Identities=43% Similarity=0.820 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccc
Q 045724 42 GSFLFLLISQIVIMAASRCLCCGRAMRP--SGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCE 119 (168)
Q Consensus 42 ~A~v~Ll~aqvi~~~~~~C~cc~~~~~~--s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~ 119 (168)
+|++||+++|+++|+++||+||+++.+| +++|+++++||++||++|++||++|++|+++|++|+|+++++ +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999999988766 479999999999999999999999999999999999999875 78999
Q ss_pred ccccceehhhHHHHHHHHHH
Q 045724 120 TLRKGVFGAGAAFVVLTGII 139 (168)
Q Consensus 120 ~~k~GvFa~aA~l~l~t~~~ 139 (168)
++|+|+|++||+|+|+|++|
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999875
No 2
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=89.55 E-value=1.7 Score=33.90 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred chhHHHHHHHHHHHHHhhheeecCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-ChHHHHHHHH
Q 045724 3 SKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSG-ARVWAIVLFI 81 (168)
Q Consensus 3 ~~~v~~vv~~lgliAfiLgik~d~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~-~r~~ai~~~v 81 (168)
+-...++.++++..++++|+-. -..|...+-+...|.+.+++++++.=++....=.=..|+ +.++.. +=..+-.+++
T Consensus 65 a~afaIisi~~~~~a~v~g~~~-l~~~~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~~~~yg~GF~L~v 142 (155)
T PF07344_consen 65 AQAFAIISIFVYGAAFVLGVLL-LCCCSCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSRGYKYGAGFALFV 142 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCCCcccCccHHHHH
Confidence 3456778888889999998820 001344455678889999888877766544433323454 333333 3356788999
Q ss_pred HHHHHHHHHHHHH
Q 045724 82 TCWVFFLIAEICL 94 (168)
Q Consensus 82 ~SWi~f~iA~~lL 94 (168)
.+|+..+++.+.|
T Consensus 143 ~aw~l~~i~ii~L 155 (155)
T PF07344_consen 143 AAWCLDIINIIFL 155 (155)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987754
No 3
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=88.81 E-value=2.3 Score=38.82 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=17.7
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHhccccCCC
Q 045724 36 ATGL-GAGSFLFLLISQIVIMAASRCLCCGRA 66 (168)
Q Consensus 36 A~~l-Gi~A~v~Ll~aqvi~~~~~~C~cc~~~ 66 (168)
|+++ |..|++.+++.=+...+...|.||+++
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~ 69 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDRK 69 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 5555 556666666665666655556544433
No 4
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=85.15 E-value=2.4 Score=36.32 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=42.6
Q ss_pred HHHhccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHH
Q 045724 56 AASRCLCCGRAMRPS--GARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFV 133 (168)
Q Consensus 56 ~~~~C~cc~~~~~~s--~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~ 133 (168)
...+|+.|+|...-+ -.|..+++||+++-+.+++|..+. +|+-..+.+ +.|++..-..+-
T Consensus 176 tlARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~-----------------~~giY~~wv~~~ 237 (256)
T PF09788_consen 176 TLARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT-----------------YGGIYVSWVGLF 237 (256)
T ss_pred ccccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh-----------------cCcEeHHHHHHH
Confidence 347999998754333 488899999999988866666554 566544311 346666666665
Q ss_pred HHHHHH
Q 045724 134 VLTGII 139 (168)
Q Consensus 134 l~t~~~ 139 (168)
|++.++
T Consensus 238 l~a~~~ 243 (256)
T PF09788_consen 238 LIALIC 243 (256)
T ss_pred HHHHHH
Confidence 555444
No 5
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=80.62 E-value=2.4 Score=27.66 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHHHHHHH
Q 045724 80 FITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGI 138 (168)
Q Consensus 80 ~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~ 138 (168)
...+|+.|+++..++..|-- |....- --||.++.+-.+++.++.
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986 664432 257888888777776643
No 6
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=78.01 E-value=4.3 Score=36.66 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 045724 39 LGAGSFLFLLISQIVIMAASRCLCCGRAM 67 (168)
Q Consensus 39 lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~ 67 (168)
+|..+++.|.+.-+...+-.-|.||+|+.
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 36667777777776666666666666554
No 7
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.70 E-value=17 Score=35.55 Aligned_cols=72 Identities=25% Similarity=0.463 Sum_probs=42.8
Q ss_pred cccCCCch-hhhHHHHHHHHHHHHHHHHHHHhccccC-CCC-CCC--------CCh---HHHHHHHHHHHHHHHHHHHHH
Q 045724 29 LLYDKDIA-TGLGAGSFLFLLISQIVIMAASRCLCCG-RAM-RPS--------GAR---VWAIVLFITCWVFFLIAEICL 94 (168)
Q Consensus 29 C~Yps~~A-~~lGi~A~v~Ll~aqvi~~~~~~C~cc~-~~~-~~s--------~~r---~~ai~~~v~SWi~f~iA~~lL 94 (168)
-+|.++.- .+++++..++|++.=.+ ...-|-||| ++. .|+ +.+ .-..+.|++||+..+++.+.|
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv~~~~--lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~F 484 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIVLCLL--LGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYF 484 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 34555555555553333 333344677 332 222 122 123567899999999999999
Q ss_pred HHHhhhcc
Q 045724 95 LAGSVRNA 102 (168)
Q Consensus 95 l~Ga~~n~ 102 (168)
+.|.....
T Consensus 485 l~G~~~~~ 492 (806)
T PF05478_consen 485 LVGGNTYT 492 (806)
T ss_pred HHHhhhhe
Confidence 99998754
No 8
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=67.74 E-value=28 Score=28.62 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=52.3
Q ss_pred cccCCCc---hhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045724 29 LLYDKDI---ATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHT 105 (168)
Q Consensus 29 C~Yps~~---A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~ 105 (168)
|.-+++. |=++.+.|+++..++-+++-....|+. ..|+...++-++ .++-.+..|+.+.-.+++
T Consensus 67 C~~rr~~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~--------~lr~vcl~Lniv-----g~vt~~VvWa~mv~~Y~~ 133 (192)
T PTZ00201 67 CPARILQFRVAQALAVISILVYGAAFVLGLVLLYGCT--------IHRWVCLALNIV-----GAVTLGVVWAAMVVTYYK 133 (192)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------hHHHHHHHHHHH-----HHHHHheeeeeEEEEEEc
Confidence 5444433 557788888888888887776665421 234333333333 233345566666555544
Q ss_pred ccccccCCcccccccccc-c-eehhhHHHHHHHHHHHHHH
Q 045724 106 KYRRYMGGRNLSCETLRK-G-VFGAGAAFVVLTGIISELY 143 (168)
Q Consensus 106 ~~~~~~~~~~~~C~~~k~-G-vFa~aA~l~l~t~~~~i~y 143 (168)
+ +.+.|+..|+ + -|+.|=.|-+.+-.+.++-
T Consensus 134 ~-------~~~~C~~~~~~~~~yGaGF~Llv~AW~L~iin 166 (192)
T PTZ00201 134 D-------DGPLCPRVRDMGYRFGTGFALLVVAWILDILN 166 (192)
T ss_pred C-------CCccccccccCCCCccCcHHHHHHHHHHHHHH
Confidence 3 1236887777 4 3555555554444444433
No 9
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=62.99 E-value=62 Score=25.08 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=55.0
Q ss_pred CcccCCCc---hhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045724 28 GLLYDKDI---ATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYH 104 (168)
Q Consensus 28 ~C~Yps~~---A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~ 104 (168)
+|...++. +-++.+.+.++..++-+.+-..-.| | +.-|....++.++++++. +..|+.+.+-|+
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~--~------~~~r~v~l~L~~~~~~~~-----~v~wa~~v~~Y~ 120 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCC--C------SCLRWVCLVLNIVGIVTL-----LVVWALMVVVYY 120 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h------hhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 46555543 6677888888888888877776554 2 235666666677666664 445555555555
Q ss_pred cccccccCCccccccccccc--eehhhHHHHHHHHHHHHH
Q 045724 105 TKYRRYMGGRNLSCETLRKG--VFGAGAAFVVLTGIISEL 142 (168)
Q Consensus 105 ~~~~~~~~~~~~~C~~~k~G--vFa~aA~l~l~t~~~~i~ 142 (168)
. +.|...++. -|+.|=.|.+.+=.+.++
T Consensus 121 ~----------~~C~~~~~~~~~yg~GF~L~v~aw~l~~i 150 (155)
T PF07344_consen 121 G----------GFCGALKSRGYKYGAGFALFVAAWCLDII 150 (155)
T ss_pred c----------CCCcCccCCCcccCccHHHHHHHHHHHHH
Confidence 2 267655443 455555555555444433
No 10
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=60.88 E-value=14 Score=34.58 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=31.9
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHhccccCCCCCC----CCChHHHHHHHHHHHHHH
Q 045724 36 ATGL-GAGSFLFLLISQIVIMAASRCLCCGRAMRP----SGARVWAIVLFITCWVFF 87 (168)
Q Consensus 36 A~~l-Gi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~----s~~r~~ai~~~v~SWi~f 87 (168)
|..+ |..++.+|.+.-+..-+..-|.||+|+..+ .+.|-....++|++-+++
T Consensus 42 aL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 42 ALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH
Confidence 4443 788888888888887777778767665422 233334444455555443
No 11
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=59.46 E-value=66 Score=23.36 Aligned_cols=132 Identities=16% Similarity=0.081 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHhhheee-cCC---CcccCCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHH
Q 045724 4 KLVLLLVFVLDLILLDSLLLL-SRG---GLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVL 79 (168)
Q Consensus 4 ~~v~~vv~~lgliAfiLgik~-d~~---~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~ 79 (168)
.++-++-.+++++.++|--.. +.+ .-.+|+...+.+.++..-++. -++..+..-+. ++ ..++..+...-...
T Consensus 7 ~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~-~~-~~~~~~~~~~~~~~ 82 (144)
T PF01284_consen 7 GILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLY--TLIFLLLYLFS-LK-YRPRIPWPLVEFIF 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHH--HHHHHHHHHHH-Hh-cccccccchhHHHH
Confidence 344556667777777775522 222 233333334444444433333 22222222111 11 11111233333444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHHHHHHHHHHHHH
Q 045724 80 FITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYY 144 (168)
Q Consensus 80 ~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yY 144 (168)
-.+-++.++++.+.+.......+-. ++ .+++......+.+...++++|++++.++.+..-
T Consensus 83 ~~v~~il~l~a~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~ 142 (144)
T PF01284_consen 83 DAVFAILWLAAFIALAAYLSDHSCS--NT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSA 142 (144)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccc--cC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655554442211 00 111223344566777789999999988877653
No 12
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=56.71 E-value=49 Score=32.41 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 045724 72 ARVWAIVLFITCWVFFLIAEICLLA 96 (168)
Q Consensus 72 ~r~~ai~~~v~SWi~f~iA~~lLl~ 96 (168)
++.+++.+++++.+..+-....|++
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777777777665444444444
No 13
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=54.07 E-value=20 Score=30.48 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=32.6
Q ss_pred HHHHHHHhccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 045724 52 IVIMAASRCLCCGRAMRPS--GARVWAIVLFITCWVFFLIAEICLLAG 97 (168)
Q Consensus 52 vi~~~~~~C~cc~~~~~~s--~~r~~ai~~~v~SWi~f~iA~~lLl~G 97 (168)
-+-|...+|+.|+|-..-+ -.|.-++.|||+.-.+.+.|.++-+.-
T Consensus 184 t~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT 231 (275)
T KOG4684|consen 184 TLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMGT 231 (275)
T ss_pred hHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 3456888999998754333 256778889998888877777765544
No 14
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=50.42 E-value=18 Score=29.69 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhhheeecCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHhc----cccCCCCCC-CCChHHHHHH
Q 045724 5 LVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRC----LCCGRAMRP-SGARVWAIVL 79 (168)
Q Consensus 5 ~v~~vv~~lgliAfiLgik~d~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C----~cc~~~~~~-s~~r~~ai~~ 79 (168)
...++.+++..+|++||+-. ---|...+--...|.+.+++.+.+.=+. ++.+-. ..|. +.+. .-+=.-+-.+
T Consensus 79 AfaIISI~v~~aA~vlg~~~-l~cc~~lr~vcl~Lnivg~vt~~VvWa~-mv~~Y~~~~~~~C~-~~~~~~~~yGaGF~L 155 (192)
T PTZ00201 79 ALAVISILVYGAAFVLGLVL-LYGCTIHRWVCLALNIVGAVTLGVVWAA-MVVTYYKDDGPLCP-RVRDMGYRFGTGFAL 155 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHHHheeeee-EEEEEEcCCCcccc-ccccCCCCccCcHHH
Confidence 45677788889999998810 0012222222344444444444333221 111100 0111 1111 1122456889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 045724 80 FITCWVFFLIAEICLLAGSVRNA 102 (168)
Q Consensus 80 ~v~SWi~f~iA~~lLl~Ga~~n~ 102 (168)
++++|+..+|....++..-..+.
T Consensus 156 lv~AW~L~iinii~lllp~~~~~ 178 (192)
T PTZ00201 156 LVVAWILDILNIIFLLLPCTVPA 178 (192)
T ss_pred HHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999774443
No 15
>PRK11383 hypothetical protein; Provisional
Probab=50.36 E-value=80 Score=24.95 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045724 77 IVLFITCWVFFLIAEICLLAGSVRNA 102 (168)
Q Consensus 77 i~~~v~SWi~f~iA~~lLl~Ga~~n~ 102 (168)
-.|..+||+.++++..+++.|-= |+
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLw-nA 34 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLW-NA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 35678999999999999999974 54
No 16
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.01 E-value=21 Score=26.59 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 045724 72 ARVWAIVLFITCWVFFLIAEI 92 (168)
Q Consensus 72 ~r~~ai~~~v~SWi~f~iA~~ 92 (168)
...+.-.++++||+-|++-..
T Consensus 82 ~~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 82 SSWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred ccchhHHHHHHHHHHHHHHHH
Confidence 335556699999999987654
No 17
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.48 E-value=2.1e+02 Score=24.21 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=56.2
Q ss_pred cccCCCc-hhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 045724 29 LLYDKDI-ATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGAR-VWAIVLFITCWVFFLIAEICLLAGSVRNAYHTK 106 (168)
Q Consensus 29 C~Yps~~-A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r-~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~ 106 (168)
|.|.+|+ |-.+|++.-++-.++-+.-.+.--..--=+. .+.++| .++-+-+-.-|...-.---|++|- +-+..
T Consensus 59 Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISs-v~~RkraVl~Dl~~SalwtflwfvGFc~l~n----qwqvs 133 (233)
T KOG4016|consen 59 CIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISS-VKDRKRAVLADLGVSALWAFLWFVGFCFLAN----QWQVS 133 (233)
T ss_pred EEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhcc
Confidence 9999998 5556666666666666555554432110000 112333 455444555565544444455543 32221
Q ss_pred cccccCCccccccccccceehhhHHHHHHHHHHHHHHH-HHHhhcCC
Q 045724 107 YRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYY-VSYSRAND 152 (168)
Q Consensus 107 ~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~~~i~yY-v~~~~a~~ 152 (168)
. ++=-.++.|==-+|=.++|++.+.|...= +.++|=|+
T Consensus 134 ~--------p~~~~~~a~saraaIafsffSilsW~~~A~lA~qR~~~ 172 (233)
T KOG4016|consen 134 K--------PKENPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYRI 172 (233)
T ss_pred C--------CCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11124455533345567888888887654 33444343
No 18
>PRK11383 hypothetical protein; Provisional
Probab=37.53 E-value=77 Score=25.03 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHHHHHHH
Q 045724 77 IVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGI 138 (168)
Q Consensus 77 i~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~ 138 (168)
-.+.-+||...+++..+|+.|. +|+.-. .--||++..+=+++|+..+
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGL-wNA~l~--------------lsEKGfY~~af~lsLFgai 119 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGL-WNATLL--------------LSEKGFYGLAFFLSLFGAV 119 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcc--------------hhhhhHHHHHHHHHHHHHH
Confidence 3678889999999999999997 476322 2357888887777777654
No 19
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=35.61 E-value=1e+02 Score=23.06 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccc
Q 045724 38 GLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLS 117 (168)
Q Consensus 38 ~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~ 117 (168)
++-+.+.++..++-++......| .++..++.. +-+.+++|..+.+++.+.-..+...+.. +++..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g~~~--~~~~~~~~~-----------ag~l~~~agl~~l~~~~~y~~~~~~~~~--~~~~~ 139 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFGLCC--TKRGPRPKV-----------AGILFILAGLCLLIAVSWYTAVIVQEFS--DPSRP 139 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhcccc--cccCCCCCc-----------ceeeeHHHhhhhheeEEEEeccCchhhc--cccCC
Confidence 44566666666665544433332 221111111 5667788888999988887655543321 11111
Q ss_pred ccccccceehhhHHHHHHHHHHH
Q 045724 118 CETLRKGVFGAGAAFVVLTGIIS 140 (168)
Q Consensus 118 C~~~k~GvFa~aA~l~l~t~~~~ 140 (168)
.++--|+-+=.+.-++.++.
T Consensus 140 ---~~~~~~G~s~~lgW~~~~l~ 159 (166)
T PF00822_consen 140 ---NIKYEFGWSFYLGWVAFILL 159 (166)
T ss_pred ---CCcEEehHHHHHHHHHHHHH
Confidence 44555555444444444443
No 20
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=31.91 E-value=2.1e+02 Score=21.12 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045724 75 WAIVLFITCWVFFLIAEICLLAGSVRN 101 (168)
Q Consensus 75 ~ai~~~v~SWi~f~iA~~lLl~Ga~~n 101 (168)
.+.+++++|.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899998888888777665544
No 21
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=30.94 E-value=1.6e+02 Score=20.20 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhheeecCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCC---CCC------CChHHHHH
Q 045724 8 LLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAM---RPS------GARVWAIV 78 (168)
Q Consensus 8 ~vv~~lgliAfiLgik~d~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~---~~s------~~r~~ai~ 78 (168)
....++|++|.+|+++ |...+++-++.+.+.+..--. +.+++. .++ ..-.-...
T Consensus 9 ~~a~~~Gi~aGILgLt----------------g~~Gf~~f~~~~~~~s~~~~~-~~~~~~~~~f~~~~~i~~~g~~~~l~ 71 (81)
T PF07019_consen 9 IIALLAGIAAGILGLT----------------GLYGFIFFFLSSFLVSLLYYA-KAGFPDEDYFGGPWEIFTEGFFSGLS 71 (81)
T ss_pred HHHHHHHHHhhhcccc----------------cHHHHHHHHHHHHHHHHHHHH-HhcCChhhhcCCHHHHHHhhhhchHH
Confidence 3456788888888875 334455555555555544422 334321 111 12233466
Q ss_pred HHHHHHHHH
Q 045724 79 LFITCWVFF 87 (168)
Q Consensus 79 ~~v~SWi~f 87 (168)
.|++.|+.+
T Consensus 72 ~Fvl~Wtl~ 80 (81)
T PF07019_consen 72 TFVLFWTLF 80 (81)
T ss_pred HHHHHhhee
Confidence 688888753
No 22
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.65 E-value=79 Score=28.80 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHHHHH
Q 045724 37 TGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFIT 82 (168)
Q Consensus 37 ~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~~v~ 82 (168)
..++-.-=++|.+.+++..+++.++.|..|.-.+..|++.++++++
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~tR~r~~~t~~~v~ 383 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRTRLRTLTTLLLVG 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhccHHHHHHHHHHH
Confidence 3445555567777788887777777777776556667666655544
No 23
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=29.55 E-value=78 Score=29.79 Aligned_cols=65 Identities=25% Similarity=0.415 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehh-------------------hHHH----
Q 045724 76 AIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGA-------------------GAAF---- 132 (168)
Q Consensus 76 ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~-------------------aA~l---- 132 (168)
-++...+.|+. ++++-..|+-.++.++++ .+|++.|.+++.. +-++
T Consensus 209 vll~i~ivW~~---~~iLT~tgay~~~~~~t~--------~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~a 277 (510)
T KOG1292|consen 209 VLLAIAIVWLY---CFILTITGAYPYKPTTTQ--------SSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMA 277 (510)
T ss_pred HHHHHHHHHHH---HHHHHhccccCCCccccC--------CcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHH
Confidence 35566777864 777888887777655543 3677777665443 3333
Q ss_pred -HHHHHHHHHHHHHHHhhcC
Q 045724 133 -VVLTGIISELYYVSYSRAN 151 (168)
Q Consensus 133 -~l~t~~~~i~yYv~~~~a~ 151 (168)
++++++-++..|...+|-.
T Consensus 278 a~~va~iES~G~y~a~ar~~ 297 (510)
T KOG1292|consen 278 ASLVAMIESTGDYIACARLS 297 (510)
T ss_pred HHHHHHHHhcchHHHHHHHh
Confidence 4566777888888777744
No 24
>COG4682 Predicted membrane protein [Function unknown]
Probab=28.92 E-value=88 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045724 74 VWAIVLFITCWVFFLIAEICLLAGSVRNAYHT 105 (168)
Q Consensus 74 ~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~ 105 (168)
+.+..+-++||..|++++...+.|- +|+.++
T Consensus 7 ~~s~af~~va~~~lv~G~vvyLiGL-Wna~~q 37 (128)
T COG4682 7 IVSKAFTIVAWLALVVGAVVYLVGL-WNACMQ 37 (128)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhh-cccchh
Confidence 4456678899999999999999996 565433
No 25
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=24.79 E-value=2.2e+02 Score=24.57 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=49.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCC-C-----ChHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcc
Q 045724 34 DIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPS-G-----ARVWAIVLF-----ITCWVFFLIAEICLLAGSVRNA 102 (168)
Q Consensus 34 ~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s-~-----~r~~ai~~~-----v~SWi~f~iA~~lLl~Ga~~n~ 102 (168)
..++..++.+-++-.++|+.--.+-...--.+..|-| + +..+++++| .-.|+.=.+|.++++.|....+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 3577889999999999998765555433222222323 2 222222222 1268888889999999999999
Q ss_pred cccccc
Q 045724 103 YHTKYR 108 (168)
Q Consensus 103 ~~~~~~ 108 (168)
++.|++
T Consensus 122 ~~~~~~ 127 (269)
T PF06800_consen 122 YQDKKS 127 (269)
T ss_pred cccccc
Confidence 888864
No 26
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.26 E-value=60 Score=25.53 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=5.5
Q ss_pred ecCCCccc
Q 045724 24 LSRGGLLY 31 (168)
Q Consensus 24 ~d~~~C~Y 31 (168)
+||+.|..
T Consensus 47 ~~q~~C~~ 54 (179)
T PF13908_consen 47 LDQGSCDN 54 (179)
T ss_pred eccccccc
Confidence 36667886
No 27
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=24.25 E-value=1.9e+02 Score=25.19 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHhhhccccccc---ccccCCcc-------------ccccccccceehhhHHHHHHHH
Q 045724 77 IVLFITCWVF---FLIAEICLLAGSVRNAYHTKY---RRYMGGRN-------------LSCETLRKGVFGAGAAFVVLTG 137 (168)
Q Consensus 77 i~~~v~SWi~---f~iA~~lLl~Ga~~n~~~~~~---~~~~~~~~-------------~~C~~~k~GvFa~aA~l~l~t~ 137 (168)
..+|+.+|.+ +++..+..|+-...-+.|.+. +-.++..+ ..=+=+.++-|+.-++..++-.
T Consensus 9 ~kl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~v~h~~e~t~~~~~~~i~~~~W~~P~v~~~~G~~~v~liLgl 88 (279)
T PF07271_consen 9 KKLFLLAWLLFVSVLFSALIVLATLILVQHNNYESPLNVVLHEEEDTNQIQGRPITEQSWFIPVVGGSAGLLAVALILGL 88 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeeccCccCCceEEEecccccceeCCeecccccceeeeccchhhHHHHHHHHHH
Confidence 4578899998 555555544444433322222 11122111 1112235666777777777766
Q ss_pred HHHHHHH
Q 045724 138 IISELYY 144 (168)
Q Consensus 138 ~~~i~yY 144 (168)
..++-+|
T Consensus 89 ~ig~p~~ 95 (279)
T PF07271_consen 89 AIGIPIY 95 (279)
T ss_pred hhcchhh
Confidence 6677555
No 28
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.03 E-value=4.2e+02 Score=22.17 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=39.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcc-ccCC---CCCCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 045724 33 KDIATGLGAGSFLFLLISQIVIMAASRCL-CCGR---AMRPSG-ARVWAIVLFITCWVFFLIAEIC 93 (168)
Q Consensus 33 s~~A~~lGi~A~v~Ll~aqvi~~~~~~C~-cc~~---~~~~s~-~r~~ai~~~v~SWi~f~iA~~l 93 (168)
+| |+.+|+...++..+.--.+|...... +--+ +.+|+. +-..+....++-|+...++-+.
T Consensus 120 ~n-A~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~ 184 (226)
T COG4858 120 KN-AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATVF 184 (226)
T ss_pred cC-CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45 89999988877776666666666543 2211 234443 4466788889999987766544
No 29
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=23.34 E-value=1.2e+02 Score=25.76 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=47.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 045724 32 DKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTK 106 (168)
Q Consensus 32 ps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~ 106 (168)
.++.+++.|+.+++-+.--|+.-+++=.|||--+ .|-.-..+ +.++-|.++|+.|-..|++-.+
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~-----~N~~YGl~------fLlvPAl~LfllG~~ln~~~W~ 76 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCSPG-----WNFLYGLV------FLLVPALVLFLLGYLLNRRTWR 76 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCCCc-----ccchhHhH------HHHHHHHHHHHHHHHHhcccch
Confidence 4567899999999999999999999999986533 33333333 2357889999999999985543
No 30
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.61 E-value=67 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.187 Sum_probs=8.5
Q ss_pred HHHHHHHHHH-HHhhhcccccc
Q 045724 86 FFLIAEICLL-AGSVRNAYHTK 106 (168)
Q Consensus 86 ~f~iA~~lLl-~Ga~~n~~~~~ 106 (168)
.+++++++++ .....|+++++
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333433333 33344544443
No 31
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.50 E-value=91 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=26.9
Q ss_pred ccceehhhHHHHHHHHHHHHHHHHHHhhcCC
Q 045724 122 RKGVFGAGAAFVVLTGIISELYYVSYSRAND 152 (168)
Q Consensus 122 k~GvFa~aA~l~l~t~~~~i~yYv~~~~a~~ 152 (168)
.-|.+.+-.++.+++.+.+++||++++|-+.
T Consensus 67 ~~G~~igi~~~gv~Si~aAllY~~~l~k~~g 97 (173)
T PF11085_consen 67 WLGNLIGIVFIGVFSIVAALLYYALLKKFKG 97 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4577888889999999999999999998773
No 32
>PLN02392 probable steroid reductase DET2
Probab=20.79 E-value=59 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceeh
Q 045724 84 WVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFG 127 (168)
Q Consensus 84 Wi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa 127 (168)
|..+.++.+++++|...|-.+........+++..-.+.+.|+|.
T Consensus 149 ~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g~~Y~iP~GGlF~ 192 (260)
T PLN02392 149 WWRFFGGLVVFLWGMRINVWSDRVLVGLKREGGGYKVPRGGWFE 192 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeECCCCCCcC
Confidence 55688999999999999965444332222222234455666663
No 33
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=20.50 E-value=21 Score=26.35 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhheee--cCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-ChHHHHHHHHHHHH
Q 045724 9 LVFVLDLILLDSLLLL--SRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSG-ARVWAIVLFITCWV 85 (168)
Q Consensus 9 vv~~lgliAfiLgik~--d~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~-~r~~ai~~~v~SWi 85 (168)
+=+++|++..+||+-. .... ...-.+.++-+.++.+++=+++..+. .+|++ .-....++.++|=+
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~----~~~~~~~piW~G~~fiisG~l~i~s~--------k~~~~~lv~~~l~lsi~s~~ 72 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSS----VLVYIGYPIWGGIFFIISGILGIASE--------KKPTKCLVIASLVLSIVSAL 72 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhH----HHHHhcccHHHHHHHHhhHHHHHHHh--------cCCcccchHHHHHHHHHHHH
Confidence 4467788888888721 1111 12233334443444444444443333 23332 22445666777777
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q 045724 86 FFLIAEICLLAGSVRNAYHTKY 107 (168)
Q Consensus 86 ~f~iA~~lLl~Ga~~n~~~~~~ 107 (168)
..+.+..+...+...+.++..+
T Consensus 73 ~a~~~i~l~~~~l~~~~~~~~~ 94 (150)
T PF04103_consen 73 LALAGIILSSISLAQQHYYYCC 94 (150)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHhccccccc
Confidence 7788888887777776654443
No 34
>PRK11403 hypothetical protein; Provisional
Probab=20.20 E-value=2.2e+02 Score=21.60 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHHHHHH
Q 045724 75 WAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTG 137 (168)
Q Consensus 75 ~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~ 137 (168)
..-.+.-+||...+++..+|..|. +|+.-. ...||+++.+=++++...
T Consensus 59 ~~~~y~~~cw~~~llsi~LL~vGl-~NA~l~--------------lsEKgfY~~af~lsLfg~ 106 (113)
T PRK11403 59 LDDFFIHICQLVALITIGLLFIGV-LNAPIN--------------AYEMVIYPIAFFVCLFGQ 106 (113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-hccccc--------------HHHhhHHHHHHHHHHHHH
Confidence 335688899999999999999997 477432 235788888777777663
Done!