Query 045724
Match_columns 168
No_of_seqs 104 out of 215
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 08:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bx7a_ g.3.15.1 (A:) Hirustas 50.6 2.3 0.00017 25.1 0.8 14 22-35 35-48 (51)
2 d1ejab_ g.3.15.1 (B:) Bdellast 49.1 2.3 0.00017 25.2 0.6 14 22-35 35-48 (53)
3 d2p7tc1 f.14.1.1 (C:86-119) Po 10.7 95 0.0069 16.0 2.4 16 6-21 6-21 (34)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 8.4 99 0.0072 19.3 2.4 15 6-20 6-20 (158)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 6.0 2.2E+02 0.016 15.0 3.3 21 126-146 8-28 (36)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 4.6 2.7E+02 0.019 14.1 2.4 26 123-148 5-30 (33)
7 d1ebda1 c.3.1.5 (A:7-154,A:272 4.4 1.2E+02 0.0087 20.1 0.9 18 114-131 175-192 (223)
8 d1ojta1 c.3.1.5 (A:117-275,A:4 4.4 1.2E+02 0.0087 20.7 0.9 18 114-131 183-200 (229)
9 d1vdca1 c.3.1.5 (A:1-117,A:244 4.3 1.8E+02 0.013 19.2 1.9 16 115-130 147-162 (192)
10 d1bboa1 g.37.1.1 (A:1-28) Enha 3.9 71 0.0052 16.2 -0.5 11 60-70 4-15 (28)
No 1
>d1bx7a_ g.3.15.1 (A:) Hirustasin {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=50.55 E-value=2.3 Score=25.10 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=10.5
Q ss_pred eeecCCCcccCCCc
Q 045724 22 LLLSRGGLLYDKDI 35 (168)
Q Consensus 22 ik~d~~~C~Yps~~ 35 (168)
||.|++.|.||-.-
T Consensus 35 fKkDeNGCeypC~C 48 (51)
T d1bx7a_ 35 LKKDENGCEYPCSC 48 (51)
T ss_dssp BCCCTTSCCCSCCB
T ss_pred ccCCCCCcccceee
Confidence 35588899999653
No 2
>d1ejab_ g.3.15.1 (B:) Bdellastasin {Medicinal leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=49.10 E-value=2.3 Score=25.24 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=10.4
Q ss_pred eeecCCCcccCCCc
Q 045724 22 LLLSRGGLLYDKDI 35 (168)
Q Consensus 22 ik~d~~~C~Yps~~ 35 (168)
||.|+|.|.||-.-
T Consensus 35 fKkDeNGCeypC~C 48 (53)
T d1ejab_ 35 FKKDDNGCEYACIC 48 (53)
T ss_dssp BCCCSSCSCCTTCB
T ss_pred ccCcCCCcccceec
Confidence 35588899998653
No 3
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=10.72 E-value=95 Score=16.05 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 045724 6 VLLLVFVLDLILLDSL 21 (168)
Q Consensus 6 v~~vv~~lgliAfiLg 21 (168)
+.+++.+-|+.+|.|-
T Consensus 6 vavvvmvagits~glv 21 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLV 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhH
Confidence 4566777788877764
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.37 E-value=99 Score=19.29 Aligned_cols=15 Identities=0% Similarity=0.366 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhh
Q 045724 6 VLLLVFVLDLILLDS 20 (168)
Q Consensus 6 v~~vv~~lgliAfiL 20 (168)
+.+++.++|++|.+.
T Consensus 6 LlVViaIIgILaaia 20 (158)
T d2pila_ 6 LMIVIAIVGILAAVA 20 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666677776665
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.01 E-value=2.2e+02 Score=14.95 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=17.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHH
Q 045724 126 FGAGAAFVVLTGIISELYYVS 146 (168)
Q Consensus 126 Fa~aA~l~l~t~~~~i~yYv~ 146 (168)
|-+.+.|.++-+.|-++.|+=
T Consensus 8 ~iAt~LFilvPt~FLliLyvq 28 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 567788899999999999974
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=4.57 E-value=2.7e+02 Score=14.12 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=20.0
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHh
Q 045724 123 KGVFGAGAAFVVLTGIISELYYVSYS 148 (168)
Q Consensus 123 ~GvFa~aA~l~l~t~~~~i~yYv~~~ 148 (168)
+|-.+.-++|+|.-.+||...|-.+.
T Consensus 5 ~gal~vi~il~l~ilvfw~gv~avf~ 30 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666778899999999998886543
No 7
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.41 E-value=1.2e+02 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.0
Q ss_pred ccccccccccceehhhHH
Q 045724 114 RNLSCETLRKGVFGAGAA 131 (168)
Q Consensus 114 ~~~~C~~~k~GvFa~aA~ 131 (168)
.|..+.|-.+|+|++|=+
T Consensus 175 vd~~~~T~~~gvyA~GDv 192 (223)
T d1ebda1 175 VDQQCRTSVPNIFAIGDI 192 (223)
T ss_dssp CCTTCBCSSTTEEECGGG
T ss_pred ECCCCCCCCCCEEEEecc
Confidence 356799999999999865
No 8
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=4.39 E-value=1.2e+02 Score=20.66 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=14.5
Q ss_pred ccccccccccceehhhHH
Q 045724 114 RNLSCETLRKGVFGAGAA 131 (168)
Q Consensus 114 ~~~~C~~~k~GvFa~aA~ 131 (168)
.|..+.|-.+|+|++|=+
T Consensus 183 vd~~~~TsvpgVyAaGDv 200 (229)
T d1ojta1 183 VDKQMRTNVPHIYAIGDI 200 (229)
T ss_dssp CCTTSBCSSTTEEECGGG
T ss_pred cCCCccCCCCCEEEEEec
Confidence 356789999999999843
No 9
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.25 E-value=1.8e+02 Score=19.19 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.0
Q ss_pred cccccccccceehhhH
Q 045724 115 NLSCETLRKGVFGAGA 130 (168)
Q Consensus 115 ~~~C~~~k~GvFa~aA 130 (168)
+.+..+..+|+|++|-
T Consensus 147 ~~~~~Ts~~GV~a~GD 162 (192)
T d1vdca1 147 PGTTQTSVPGVFAAGD 162 (192)
T ss_dssp TTSCBCSSTTEEECGG
T ss_pred CCceEecCCCEEEeee
Confidence 3478888999999984
No 10
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.92 E-value=71 Score=16.17 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=6.9
Q ss_pred ccccCCCC-CCC
Q 045724 60 CLCCGRAM-RPS 70 (168)
Q Consensus 60 C~cc~~~~-~~s 70 (168)
|.+|+.+- +||
T Consensus 4 C~~Cg~~C~KPS 15 (28)
T d1bboa1 4 CEECGIRAKKPS 15 (28)
T ss_dssp CTTTCCBCSSHH
T ss_pred ccccCcccCCHH
Confidence 67787663 554
Done!